AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85612.t1 MTR_2g039930 96.305 433 10 2 3 430 40 471 0.0 862
MS.gene85612.t1 MTR_2g039930 95.908 391 10 2 45 430 1 390 0.0 772
MS.gene85612.t1 MTR_4g126010 76.291 426 81 5 3 425 40 448 0.0 639
MS.gene85612.t1 MTR_2g099670 69.374 431 124 4 3 425 40 470 0.0 612
MS.gene85612.t1 MTR_8g018310 68.445 431 127 5 3 425 40 469 0.0 587
MS.gene85612.t1 MTR_2g099670 69.287 407 117 4 27 425 12 418 0.0 575
MS.gene85612.t1 MTR_8g018310 77.644 331 72 2 3 332 40 369 0.0 546
MS.gene85612.t1 MTR_1g069720 53.547 437 165 7 3 424 40 453 8.64e-159 456
MS.gene85612.t1 MTR_7g097160 67.949 312 90 3 3 309 40 346 7.64e-158 454
MS.gene85612.t1 MTR_1g042280 73.929 280 71 1 1 278 7 286 1.08e-157 447
MS.gene85612.t1 MTR_1g042280 74.460 278 69 1 3 278 41 318 4.25e-157 452
MS.gene85612.t1 MTR_8g102930 57.722 395 150 5 3 391 40 423 6.75e-154 442
MS.gene85612.t1 MTR_1g075870 74.419 258 66 0 3 260 41 298 1.88e-152 435
MS.gene85612.t1 MTR_1g075870 74.419 258 66 0 3 260 41 298 1.05e-151 438
MS.gene85612.t1 MTR_6g087070 74.615 260 66 0 3 262 40 299 1.52e-150 434
MS.gene85612.t1 MTR_3g110180 59.475 343 128 4 3 344 40 372 1.35e-143 416
MS.gene85612.t1 MTR_1g075870 75.000 240 60 0 21 260 2 241 1.42e-143 411
MS.gene85612.t1 MTR_3g110180 59.475 343 127 5 3 344 40 371 7.27e-142 412
MS.gene85612.t1 MTR_1g004990 66.667 282 87 1 2 276 39 320 1.04e-141 411
MS.gene85612.t1 MTR_0492s0030 61.128 337 118 5 3 333 40 369 2.02e-138 401
MS.gene85612.t1 MTR_0543s0020 61.128 337 118 5 3 333 40 369 2.02e-138 401
MS.gene85612.t1 MTR_7g097160 66.346 208 60 3 107 309 25 227 1.53e-93 285
MS.gene85612.t1 MTR_7g006030 39.565 230 133 3 14 240 90 316 1.18e-52 186
MS.gene85612.t1 MTR_3g110240 40.708 226 128 3 14 236 168 390 1.24e-50 182
MS.gene85612.t1 MTR_7g085540 39.565 230 133 3 14 240 199 425 2.40e-50 181
MS.gene85612.t1 MTR_1g116210 38.696 230 135 3 14 240 167 393 7.75e-50 179
MS.gene85612.t1 MTR_1g007150 38.938 226 132 3 14 236 171 393 1.28e-49 179
MS.gene85612.t1 MTR_8g014050 38.222 225 133 3 15 236 183 404 1.77e-45 167
MS.gene85612.t1 MTR_7g116400 52.703 74 28 2 45 111 3 76 3.57e-18 79.7
MS.gene85612.t1 MTR_7g073520 33.571 140 79 4 70 206 250 378 6.28e-12 67.8
MS.gene85612.t1 MTR_4g132860 28.649 185 113 5 63 245 178 345 3.20e-11 65.1
MS.gene85612.t1 MTR_5g007590 38.095 84 38 2 34 111 53 128 6.21e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85612.t1 AT4G26100 67.059 425 119 4 3 425 40 445 0.0 586
MS.gene85612.t1 AT5G57015 64.336 429 118 6 3 430 40 434 0.0 556
MS.gene85612.t1 AT1G72710 65.741 432 127 6 3 421 40 463 0.0 555
MS.gene85612.t1 AT2G19470 57.674 430 115 4 3 425 40 409 6.60e-173 491
MS.gene85612.t1 AT5G44100 77.907 258 57 0 3 260 40 297 2.19e-158 456
MS.gene85612.t1 AT5G44100 77.907 258 57 0 3 260 40 297 2.19e-158 456
MS.gene85612.t1 AT1G03930 66.877 317 89 3 3 309 40 350 1.83e-157 453
MS.gene85612.t1 AT3G23340 75.094 265 66 0 3 267 26 290 7.80e-157 450
MS.gene85612.t1 AT3G23340 75.094 265 66 0 3 267 40 304 1.26e-156 450
MS.gene85612.t1 AT4G28540 59.726 365 130 5 3 359 44 399 7.13e-155 447
MS.gene85612.t1 AT1G04440 61.808 343 114 3 3 328 40 382 1.81e-152 441
MS.gene85612.t1 AT4G28860 65.495 313 104 2 3 315 40 348 5.59e-152 436
MS.gene85612.t1 AT4G28860 58.904 365 143 3 3 364 40 400 8.82e-152 437
MS.gene85612.t1 AT4G28880 60.274 365 129 6 3 359 40 396 1.25e-151 436
MS.gene85612.t1 AT4G28880 60.274 365 129 6 3 359 40 396 1.25e-151 436
MS.gene85612.t1 AT4G28880 60.274 365 129 6 3 359 40 396 1.25e-151 436
MS.gene85612.t1 AT4G28880 60.274 365 129 6 3 359 40 396 1.25e-151 436
MS.gene85612.t1 AT4G14340 58.245 376 136 5 3 359 46 419 1.07e-150 436
MS.gene85612.t1 AT4G14340 74.031 258 67 0 3 260 46 303 6.68e-150 430
MS.gene85612.t1 AT5G43320 60.756 344 116 2 3 327 40 383 8.30e-150 434
MS.gene85612.t1 AT5G43320 74.031 258 67 0 3 260 40 297 2.69e-147 424
MS.gene85612.t1 AT5G43320 74.031 258 67 0 3 260 40 297 2.69e-147 424
MS.gene85612.t1 AT4G08800 65.882 255 55 2 3 257 40 262 2.81e-122 357
MS.gene85612.t1 AT2G25760 41.150 226 130 2 14 236 161 386 2.92e-54 191
MS.gene85612.t1 AT2G25760 41.150 226 127 3 14 236 161 383 7.79e-53 187
MS.gene85612.t1 AT5G18190 40.870 230 130 3 14 240 182 408 9.06e-51 182
MS.gene85612.t1 AT5G18190 40.870 230 130 3 14 240 182 408 9.06e-51 182
MS.gene85612.t1 AT3G13670 38.261 230 136 3 14 240 190 416 2.32e-50 181
MS.gene85612.t1 AT3G03940 40.435 230 131 3 14 240 192 418 4.77e-50 180

Find 102 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCAAACCATTTAATATT+TGG 0.121812 2.1:-48592151 None:intergenic
CTGGGATTCCAAATATTAAA+TGG 0.220549 2.1:+48592143 MS.gene85612:CDS
AATATTTACAGAATTTAAAA+TGG 0.232763 2.1:-48595948 None:intergenic
TCCATTATTGCCGGTCATTA+AGG 0.259862 2.1:+48594547 MS.gene85612:CDS
TAGGTTTACTGTATTGATTT+TGG 0.282532 2.1:+48592579 MS.gene85612:intron
ACCTTAATGACCGGCAATAA+TGG 0.283364 2.1:-48594548 None:intergenic
CTTAATGCTGGAACTAGTTC+TGG 0.302221 2.1:+48594933 MS.gene85612:CDS
ATTCCAAATATTAAATGGTT+TGG 0.317069 2.1:+48592148 MS.gene85612:CDS
CCCATCAACACATTCCTTAC+AGG 0.339922 2.1:+48592631 MS.gene85612:CDS
CTAGAAGATGTTACTCTCCT+TGG 0.347085 2.1:-48596270 None:intergenic
AGGGAAGAAGGGCGTCATTC+TGG 0.376963 2.1:+48595884 MS.gene85612:CDS
ATGTCTTGATGTACTTCCTC+AGG 0.377055 2.1:+48594210 MS.gene85612:CDS
GATAATTTCCTCATGGGCTT+GGG 0.378614 2.1:+48592456 MS.gene85612:CDS
AGATAATTTCCTCATGGGCT+TGG 0.386906 2.1:+48592455 MS.gene85612:CDS
AGTCTGATTACATCTTTGAT+TGG 0.394143 2.1:+48594771 MS.gene85612:CDS
AGCAGTAGCCGCAATGCATT+TGG 0.394778 2.1:+48596144 MS.gene85612:CDS
GGTCATTAAGGTTTGATGAT+AGG 0.395299 2.1:+48594559 MS.gene85612:CDS
AAGCCCATGAGGAAATTATC+TGG 0.401745 2.1:-48592453 None:intergenic
CATCATACTTCCATTATTGC+CGG 0.415822 2.1:+48594538 MS.gene85612:CDS
TCAAACCTTCACGAATAAAC+AGG 0.424318 2.1:-48594617 None:intergenic
TCTTCGAGGCGAAGAATGTC+GGG 0.429913 2.1:+48595923 MS.gene85612:CDS
AAATGGGAAGAAATTATTGA+TGG 0.442997 2.1:-48596368 None:intergenic
CTTGGGAAAGCGGGAAAACC+AGG 0.448025 2.1:+48592473 MS.gene85612:CDS
ATTCTAAATCGCTTCTCCAC+CGG 0.454371 2.1:+48592421 MS.gene85612:CDS
TTATCAAGTGCCAATGTCTT+GGG 0.459266 2.1:+48596090 MS.gene85612:CDS
GTTATCAAGTGCCAATGTCT+TGG 0.467601 2.1:+48596089 MS.gene85612:intron
TTCTAAATCGCTTCTCCACC+GGG 0.469845 2.1:+48592422 MS.gene85612:CDS
TTGTCCACTTGAATGTATGA+TGG 0.472205 2.1:-48596220 None:intergenic
TTCTGGAATCCCTCCTGCTA+TGG 0.472854 2.1:+48594950 MS.gene85612:CDS
ATATGCAGTCTTCCTTGGCA+AGG 0.473214 2.1:+48594329 MS.gene85612:intron
CCTCATGGGCTTGGGAAAGC+GGG 0.474186 2.1:+48592464 MS.gene85612:CDS
AGTGGATCAAGGCGACTTCA+TGG 0.475207 2.1:+48596120 MS.gene85612:CDS
TCTCATGCTTGCTGAGCAAA+TGG 0.476304 2.1:+48592270 MS.gene85612:CDS
GTTACTCTCCTTGGATCTAA+AGG 0.477041 2.1:-48596261 None:intergenic
CGGTCCTAGTGATGCTGCTA+TGG 0.477310 2.1:+48595988 MS.gene85612:CDS
GAAGGTTTCTACTTCGATTG+AGG 0.478929 2.1:+48594400 MS.gene85612:CDS
ATATTTACAGAATTTAAAAT+GGG 0.479156 2.1:-48595947 None:intergenic
CTCTTCGAGGCGAAGAATGT+CGG 0.480239 2.1:+48595922 MS.gene85612:CDS
ACCTGTAAGGAATGTGTTGA+TGG 0.480755 2.1:-48592632 None:intergenic
AATCTTACAGGAAGGGAAGA+AGG 0.485014 2.1:+48595872 MS.gene85612:intron
CGAGAAAATCAGTGAAAAGA+AGG 0.488049 2.1:+48594382 MS.gene85612:CDS
AGTAGCCGCAATGCATTTGG+CGG 0.491190 2.1:+48596147 MS.gene85612:CDS
TATTAAATGGTTTGGAGTGG+AGG 0.500434 2.1:+48592156 MS.gene85612:CDS
AATTATCTGGTTTAATATCC+CGG 0.500662 2.1:-48592440 None:intergenic
GAATTATGAAACTGCACTCA+AGG 0.502622 2.1:+48596311 MS.gene85612:CDS
CGTGCTACTGAAGATATCAA+TGG 0.508424 2.1:+48596192 MS.gene85612:CDS
ACTAAATCATCATACCTGTA+AGG 0.509141 2.1:-48592645 None:intergenic
TATGCAGTCTTCCTTGGCAA+GGG 0.512407 2.1:+48594330 MS.gene85612:intron
AAACCAGATAATTTCCTCAT+GGG 0.512524 2.1:+48592450 MS.gene85612:CDS
CGAGACCTGTTTATTCGTGA+AGG 0.514655 2.1:+48594612 MS.gene85612:CDS
TAAACCAGATAATTTCCTCA+TGG 0.520433 2.1:+48592449 MS.gene85612:CDS
AGAGATGATTTAGAGTCTGT+TGG 0.523766 2.1:+48594185 MS.gene85612:CDS
TCCTCATGGGCTTGGGAAAG+CGG 0.524897 2.1:+48592463 MS.gene85612:CDS
ATGAATACCCACCTTGGCAT+TGG 0.525454 2.1:+48594044 MS.gene85612:CDS
ATTAAATGGTTTGGAGTGGA+GGG 0.526860 2.1:+48592157 MS.gene85612:CDS
TGGTTTCAGTAAACTCTTCG+AGG 0.527254 2.1:+48595909 MS.gene85612:CDS
AATCAAAGATGTAATCAGAC+TGG 0.530027 2.1:-48594769 None:intergenic
TTGCAGCATTCTGTACAACT+TGG 0.530609 2.1:-48591981 None:intergenic
AGAAGGGCGTCATTCTGGTA+TGG 0.534265 2.1:+48595889 MS.gene85612:CDS
CATAGCAGCATCACTAGGAC+CGG 0.537671 2.1:-48595987 None:intergenic
CTATTAGCATTAGCCATAGC+AGG 0.539572 2.1:-48594963 None:intergenic
AATGGGAAGAAATTATTGAT+GGG 0.543960 2.1:-48596367 None:intergenic
AAATATTAAATGGTTTGGAG+TGG 0.550968 2.1:+48592153 MS.gene85612:CDS
TGTCTTGATGTACTTCCTCA+GGG 0.554527 2.1:+48594211 MS.gene85612:CDS
TGGGCGAGTCGAGTGGATCA+AGG 0.557536 2.1:+48596109 MS.gene85612:CDS
ACTCGACTCGCCCAAGACAT+TGG 0.558346 2.1:-48596100 None:intergenic
AGATTACAATGTTCTAGTAA+TGG 0.562002 2.1:+48592180 MS.gene85612:CDS
GTTCTAGTAATGGATCTGCT+TGG 0.563049 2.1:+48592190 MS.gene85612:CDS
CTTACCATAGCAGCATCACT+AGG 0.567272 2.1:-48595992 None:intergenic
ATCTTACAGGAAGGGAAGAA+GGG 0.569393 2.1:+48595873 MS.gene85612:intron
TATCATCAAACCTTAATGAC+CGG 0.570464 2.1:-48594557 None:intergenic
CGTATATACCAATGCCAAGG+TGG 0.570539 2.1:-48594052 None:intergenic
AATGTCTTGGGCGAGTCGAG+TGG 0.571566 2.1:+48596102 MS.gene85612:CDS
ACTGCACTCAAGGGCATCGA+GGG 0.574371 2.1:+48596321 MS.gene85612:CDS
CGTGCTTGAAGCCCTTGCCA+AGG 0.576416 2.1:-48594341 None:intergenic
GGACAAAGAATTTCACAAAG+TGG 0.577161 2.1:+48596237 MS.gene85612:CDS
AAGTATGATGCAAACTCTGT+TGG 0.578562 2.1:-48594525 None:intergenic
TTAAACATCTCTTCAAGACT+AGG 0.585069 2.1:-48592214 None:intergenic
CCACTTACGATAGCACGTGC+TGG 0.587245 2.1:-48594833 None:intergenic
CCCGCTTTCCCAAGCCCATG+AGG 0.590879 2.1:-48592464 None:intergenic
GTATTCCAGGCCTTGTGTCG+AGG 0.592620 2.1:+48594498 MS.gene85612:intron
AAAGTGGACCTTTAGATCCA+AGG 0.597314 2.1:+48596253 MS.gene85612:CDS
AATTATGAAACTGCACTCAA+GGG 0.603669 2.1:+48596312 MS.gene85612:CDS
TGATGTACTTCCTCAGGGGA+AGG 0.612571 2.1:+48594216 MS.gene85612:CDS
AAAGCCATCATACATTCAAG+TGG 0.637895 2.1:+48596216 MS.gene85612:CDS
TGTTGGATAACCTCGACACA+AGG 0.638443 2.1:-48594508 None:intergenic
TTAGCATTAGCCATAGCAGG+AGG 0.649368 2.1:-48594960 None:intergenic
GTATATACCAATGCCAAGGT+GGG 0.649447 2.1:-48594051 None:intergenic
GCTAGCATGAATACCCACCT+TGG 0.649536 2.1:+48594038 MS.gene85612:CDS
AACTGCACTCAAGGGCATCG+AGG 0.650556 2.1:+48596320 MS.gene85612:CDS
GATCGTATATACCAATGCCA+AGG 0.650591 2.1:-48594055 None:intergenic
TAGCATTAGCCATAGCAGGA+GGG 0.651919 2.1:-48594959 None:intergenic
GCTAATGCTAATAGACACAC+AGG 0.661257 2.1:+48594972 MS.gene85612:CDS
CAGCACCGCCAAATGCATTG+CGG 0.663018 2.1:-48596152 None:intergenic
TTGGACTCATACAGCAACTG+AGG 0.668956 2.1:-48591962 None:intergenic
CCTGTAAGGAATGTGTTGAT+GGG 0.670053 2.1:-48592631 None:intergenic
GTCTTGATGTACTTCCTCAG+GGG 0.674830 2.1:+48594212 MS.gene85612:CDS
CTTACGATAGCACGTGCTGG+AGG 0.677704 2.1:-48594830 None:intergenic
ATAGCAGCATCACTAGGACC+GGG 0.681805 2.1:-48595986 None:intergenic
AAGTTGTACAGAATGCTGCA+AGG 0.682633 2.1:+48591983 MS.gene85612:CDS
GTAATAATCACCTTCCCCTG+AGG 0.710232 2.1:-48594226 None:intergenic
TATCTGGTTTAATATCCCGG+TGG 0.734033 2.1:-48592437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATCATTGTATAAAT+AGG - chr2.1:48592301-48592320 None:intergenic 10.0%
!! AATATTATTAGAAAGTAAAA+GGG + chr2.1:48595429-48595448 MS.gene85612:intron 10.0%
!! AATATTTACAGAATTTAAAA+TGG - chr2.1:48595951-48595970 None:intergenic 10.0%
!! TTAATAAAGCTAAATAATAT+TGG - chr2.1:48595146-48595165 None:intergenic 10.0%
!!! ATATTTACAGAATTTAAAAT+GGG - chr2.1:48595950-48595969 None:intergenic 10.0%
!!! TAAAATAAAAAATACCATTT+TGG + chr2.1:48593577-48593596 MS.gene85612:intron 10.0%
!!! TAGCTTTATTAAATTTATTT+GGG + chr2.1:48595154-48595173 MS.gene85612:intron 10.0%
!!! TTAGCTTTATTAAATTTATT+TGG + chr2.1:48595153-48595172 MS.gene85612:intron 10.0%
!! AACTAAATTTAATGTCAAAA+AGG - chr2.1:48595021-48595040 None:intergenic 15.0%
!! ATAAATATATGATATATGAG+AGG + chr2.1:48593710-48593729 MS.gene85612:intron 15.0%
!! ATATTATTAGAAAGTAAAAG+GGG + chr2.1:48595430-48595449 MS.gene85612:intron 15.0%
!! ATTAGGCATTTATTATATAT+TGG + chr2.1:48592548-48592567 MS.gene85612:intron 15.0%
!! GAATATTATTAGAAAGTAAA+AGG + chr2.1:48595428-48595447 MS.gene85612:intron 15.0%
!! TATATTCATGTTCATATATT+AGG + chr2.1:48592531-48592550 MS.gene85612:intron 15.0%
!! TTCATTATTTAATCACTTAA+AGG + chr2.1:48591513-48591532 MS.gene85612:intron 15.0%
!!! AAATTGATTCATTATCATAT+TGG + chr2.1:48594731-48594750 MS.gene85612:intron 15.0%
!!! ACTCAATTTTAATAATTTTG+CGG - chr2.1:48591755-48591774 None:intergenic 15.0%
!!! TAACAAAAGTTTATTTTCTT+TGG - chr2.1:48591466-48591485 None:intergenic 15.0%
!!! TAATCTCTTATAGTTTTTAT+AGG - chr2.1:48593663-48593682 None:intergenic 15.0%
!!! TATAAGAATTTTGAATAGAA+AGG - chr2.1:48591348-48591367 None:intergenic 15.0%
!!! TTATATATTGGTTTATATGT+AGG + chr2.1:48592560-48592579 MS.gene85612:intron 15.0%
!!! TTTCAGTATTCATTTTAAAT+AGG - chr2.1:48595756-48595775 None:intergenic 15.0%
!!! TTTTGACATTAAATTTAGTT+TGG + chr2.1:48595021-48595040 MS.gene85612:intron 15.0%
!!! TTTTTGTAAATATCAAATAG+AGG + chr2.1:48593615-48593634 MS.gene85612:intron 15.0%
!! AAAATGAAAATCAATCCAAT+GGG - chr2.1:48594309-48594328 None:intergenic 20.0%
!! AAACTAGGCTATATAAAATT+AGG - chr2.1:48593915-48593934 None:intergenic 20.0%
!! AACTAGGCTATATAAAATTA+GGG - chr2.1:48593914-48593933 None:intergenic 20.0%
!! AAGTTATATGCTTATGAAAA+CGG - chr2.1:48592021-48592040 None:intergenic 20.0%
!! ATAAAATTAGGGTCTAAATA+TGG - chr2.1:48593903-48593922 None:intergenic 20.0%
!! ATGAATAAATTAGAGAAACT+CGG - chr2.1:48591498-48591517 None:intergenic 20.0%
!! ATTCCAAATATTAAATGGTT+TGG + chr2.1:48592148-48592167 MS.gene85612:CDS 20.0%
!! ATTTAAGTCATGTTATGTTT+AGG + chr2.1:48595080-48595099 MS.gene85612:intron 20.0%
!! TAAAATGAAAATCAATCCAA+TGG - chr2.1:48594310-48594329 None:intergenic 20.0%
!! TATATTGAAAAAGACTAATG+AGG + chr2.1:48593312-48593331 MS.gene85612:intron 20.0%
!! TATTCAACTTATTAATCTCT+AGG - chr2.1:48593693-48593712 None:intergenic 20.0%
!! TGAATATACAATACATTAGA+AGG - chr2.1:48592519-48592538 None:intergenic 20.0%
!! TTAAAATGTTACAGCTATAT+TGG - chr2.1:48592765-48592784 None:intergenic 20.0%
!! TTAACTTACTATTAGTTCAA+TGG - chr2.1:48592343-48592362 None:intergenic 20.0%
!! TTGATTAATTGTAATATGCA+TGG - chr2.1:48591298-48591317 None:intergenic 20.0%
!!! AAGATTTTGAATGAATGTTT+TGG + chr2.1:48593429-48593448 MS.gene85612:intron 20.0%
!!! AGTTTTCTTTATAAGTCAAA+AGG - chr2.1:48593293-48593312 None:intergenic 20.0%
!!! ATTTTTTAAAAGGAAACTGA+AGG - chr2.1:48596033-48596052 None:intergenic 20.0%
!!! TAATTTTATATAGCCTAGTT+TGG + chr2.1:48593914-48593933 MS.gene85612:intron 20.0%
!!! TACATTATTTTGTTAGAAAC+TGG - chr2.1:48591633-48591652 None:intergenic 20.0%
!!! TATTTCATTTTGAAACAACA+GGG + chr2.1:48593983-48594002 MS.gene85612:intron 20.0%
!!! TTTATTTTATATATGCTTGC+AGG + chr2.1:48594684-48594703 MS.gene85612:intron 20.0%
!!! TTTTAAGGTGAAATAGTAAA+AGG - chr2.1:48591200-48591219 None:intergenic 20.0%
! AAAATTGTAGAAGAAAACTG+AGG - chr2.1:48595215-48595234 None:intergenic 25.0%
! AAATTGTAGAAGAAAACTGA+GGG - chr2.1:48595214-48595233 None:intergenic 25.0%
! ACTCCAAACCATTTAATATT+TGG - chr2.1:48592154-48592173 None:intergenic 25.0%
! AGATTACAATGTTCTAGTAA+TGG + chr2.1:48592180-48592199 MS.gene85612:CDS 25.0%
! AGGGAAAATAAAAATTTGAC+TGG + chr2.1:48594002-48594021 MS.gene85612:intron 25.0%
! ATGGTATGTTTCAAATATCT+GGG - chr2.1:48591279-48591298 None:intergenic 25.0%
! CAAAATAATGTATGCTTCAT+TGG + chr2.1:48591641-48591660 MS.gene85612:intron 25.0%
! GATGATTCATTTCACATATA+AGG - chr2.1:48591709-48591728 None:intergenic 25.0%
! GGAGAAAGATTATTAATTAC+AGG - chr2.1:48591431-48591450 None:intergenic 25.0%
! TGAATAAATTAGAGAAACTC+GGG - chr2.1:48591497-48591516 None:intergenic 25.0%
! TGATATAGTTCTTATATCAC+CGG - chr2.1:48593787-48593806 None:intergenic 25.0%
! TTAGCAATGTATATACATGA+GGG + chr2.1:48592833-48592852 MS.gene85612:intron 25.0%
!! AAATATTAAATGGTTTGGAG+TGG + chr2.1:48592153-48592172 MS.gene85612:CDS 25.0%
!! AATATGCCAATATTTTTCTG+AGG - chr2.1:48591325-48591344 None:intergenic 25.0%
!! AATTATCTGGTTTAATATCC+CGG - chr2.1:48592443-48592462 None:intergenic 25.0%
!! ACCTTACAAATAGATTTTGT+GGG + chr2.1:48593124-48593143 MS.gene85612:intron 25.0%
!! TCATTTTAAATAGGCTAACA+AGG - chr2.1:48595747-48595766 None:intergenic 25.0%
!! TTTTATAGTTGAAAACGAAG+CGG + chr2.1:48591576-48591595 MS.gene85612:intron 25.0%
!! TTTTTAATCAGGAAAATGTC+AGG + chr2.1:48591930-48591949 MS.gene85612:intron 25.0%
!!! AAGTTTATTTTCTTTGGTTC+AGG - chr2.1:48591460-48591479 None:intergenic 25.0%
!!! ATTGAATTTTGGAGGATAAA+GGG + chr2.1:48593344-48593363 MS.gene85612:intron 25.0%
!!! GATGTTGTCTTTATTTTTCA+TGG + chr2.1:48595489-48595508 MS.gene85612:intron 25.0%
!!! GTATTTCATTTTGAAACAAC+AGG + chr2.1:48593982-48594001 MS.gene85612:intron 25.0%
!!! TAGGTTTACTGTATTGATTT+TGG + chr2.1:48592579-48592598 MS.gene85612:intron 25.0%
!!! TATTGAATTTTGGAGGATAA+AGG + chr2.1:48593343-48593362 MS.gene85612:intron 25.0%
!!! TCATCAAAACTTTGTTTTTC+AGG + chr2.1:48593845-48593864 MS.gene85612:intron 25.0%
!!! TTTTTTTCCCATAATCTTAC+AGG + chr2.1:48595860-48595879 MS.gene85612:intron 25.0%
AAACCAGATAATTTCCTCAT+GGG + chr2.1:48592450-48592469 MS.gene85612:CDS 30.0%
AAGACCAATTATTCAAAAGC+AGG - chr2.1:48592078-48592097 None:intergenic 30.0%
AAGTCTCCTCAGAAAAATAT+TGG + chr2.1:48591316-48591335 MS.gene85612:intron 30.0%
AATCAAAGATGTAATCAGAC+TGG - chr2.1:48594772-48594791 None:intergenic 30.0%
AATTATGAAACTGCACTCAA+GGG + chr2.1:48596312-48596331 MS.gene85612:CDS 30.0%
ACTAAATCATCATACCTGTA+AGG - chr2.1:48592648-48592667 None:intergenic 30.0%
AGACCAATTATTCAAAAGCA+GGG - chr2.1:48592077-48592096 None:intergenic 30.0%
AGTCTGATTACATCTTTGAT+TGG + chr2.1:48594771-48594790 MS.gene85612:CDS 30.0%
AGTGCATATTACGTATTCAA+AGG - chr2.1:48594448-48594467 None:intergenic 30.0%
ATAAAGACAGGTTTAAACCA+CGG - chr2.1:48595109-48595128 None:intergenic 30.0%
ATCATATTGGCATTTGAACA+GGG + chr2.1:48594744-48594763 MS.gene85612:intron 30.0%
ATGTCTACTTTCTACACATA+TGG - chr2.1:48591543-48591562 None:intergenic 30.0%
ATTTCAAACCAGAAAAATCC+CGG + chr2.1:48595968-48595987 MS.gene85612:CDS 30.0%
CAAAGTGATGAATAAGTAGT+AGG + chr2.1:48593191-48593210 MS.gene85612:intron 30.0%
CACATAGAATGGAAAGTAAA+TGG - chr2.1:48595515-48595534 None:intergenic 30.0%
CATGGTATGTTTCAAATATC+TGG - chr2.1:48591280-48591299 None:intergenic 30.0%
CCTATAAAACAACAACAATC+AGG - chr2.1:48593764-48593783 None:intergenic 30.0%
CTAAATCTTGAATTCAAGCT+GGG + chr2.1:48593218-48593237 MS.gene85612:intron 30.0%
CTCATAAAAAAACACCTCTT+TGG + chr2.1:48594647-48594666 MS.gene85612:intron 30.0%
CTGGGATTCCAAATATTAAA+TGG + chr2.1:48592143-48592162 MS.gene85612:CDS 30.0%
CTTACTATTAGTTCAATGGT+AGG - chr2.1:48592339-48592358 None:intergenic 30.0%
CTTAGCAATGTATATACATG+AGG + chr2.1:48592832-48592851 MS.gene85612:intron 30.0%
CTTATTCATCACTTTGTATG+AGG - chr2.1:48593187-48593206 None:intergenic 30.0%
CTTTGCTCTATAGTAATGAT+CGG - chr2.1:48594161-48594180 None:intergenic 30.0%
GTAAACAGAGTCTTTCTAAT+AGG + chr2.1:48595789-48595808 MS.gene85612:intron 30.0%
GTGAAAATGAACACATAGAA+TGG - chr2.1:48595526-48595545 None:intergenic 30.0%
TAAACCAGATAATTTCCTCA+TGG + chr2.1:48592449-48592468 MS.gene85612:CDS 30.0%
TACAGAGTAGAGAATATATC+AGG - chr2.1:48591788-48591807 None:intergenic 30.0%
TACAGGTATGATGATTTAGT+TGG + chr2.1:48592648-48592667 MS.gene85612:intron 30.0%
TATCATATTGGCATTTGAAC+AGG + chr2.1:48594743-48594762 MS.gene85612:intron 30.0%
TATCATCAAACCTTAATGAC+CGG - chr2.1:48594560-48594579 None:intergenic 30.0%
TATGTTAATCTCAGAGTCTA+TGG + chr2.1:48591366-48591385 MS.gene85612:intron 30.0%
TCATTAGACGATACTTTAGA+AGG + chr2.1:48593035-48593054 MS.gene85612:intron 30.0%
TGATATATGAGAGGACATTA+TGG + chr2.1:48593719-48593738 MS.gene85612:intron 30.0%
TGTGTCAATAAGATCCAAAA+TGG - chr2.1:48593594-48593613 None:intergenic 30.0%
TTAAACATCTCTTCAAGACT+AGG - chr2.1:48592217-48592236 None:intergenic 30.0%
TTATTTGGGAAGAATGACTA+AGG + chr2.1:48595168-48595187 MS.gene85612:intron 30.0%
! AGATCTTTTCCATTAGCAAT+GGG + chr2.1:48594882-48594901 MS.gene85612:intron 30.0%
! ATTTTATATGCAGTCTTCCT+TGG + chr2.1:48594324-48594343 MS.gene85612:intron 30.0%
! CACCTTACAAATAGATTTTG+TGG + chr2.1:48593123-48593142 MS.gene85612:intron 30.0%
! CATTAGACGATACTTTAGAA+GGG + chr2.1:48593036-48593055 MS.gene85612:intron 30.0%
! CCTTACAAATAGATTTTGTG+GGG + chr2.1:48593125-48593144 MS.gene85612:intron 30.0%
! GGTTCTGTTACTTCTATTAA+TGG - chr2.1:48591612-48591631 None:intergenic 30.0%
! TGAACTTTGCTGGTAATTTT+GGG + chr2.1:48591810-48591829 MS.gene85612:intron 30.0%
! TTGAACTTTGCTGGTAATTT+TGG + chr2.1:48591809-48591828 MS.gene85612:intron 30.0%
! TTTTGCCATATTGAGCTTTT+GGG + chr2.1:48595823-48595842 MS.gene85612:intron 30.0%
! TTTTTGCCATATTGAGCTTT+TGG + chr2.1:48595822-48595841 MS.gene85612:intron 30.0%
!! ATACCCTGCTTTTGAATAAT+TGG + chr2.1:48592071-48592090 MS.gene85612:intron 30.0%
!! CTCTAACTCAAGTTTTATCT+TGG + chr2.1:48592117-48592136 MS.gene85612:intron 30.0%
!! TATTTTCTTTGGTTCAGGAA+GGG - chr2.1:48591455-48591474 None:intergenic 30.0%
!! TTATTTTCTTTGGTTCAGGA+AGG - chr2.1:48591456-48591475 None:intergenic 30.0%
!!! ATTGTTGTTGTTTTATAGGC+CGG + chr2.1:48593765-48593784 MS.gene85612:intron 30.0%
!!! CCTGATTGTTGTTGTTTTAT+AGG + chr2.1:48593761-48593780 MS.gene85612:intron 30.0%
!!! TTTGAGGTATTGAATTTTGG+AGG + chr2.1:48593336-48593355 MS.gene85612:intron 30.0%
AAAAGACTAATGAGGCTTTG+AGG + chr2.1:48593320-48593339 MS.gene85612:intron 35.0%
AAAGCCATCATACATTCAAG+TGG + chr2.1:48596216-48596235 MS.gene85612:CDS 35.0%
AACAATTGTGACAGAAAAGG+TGG - chr2.1:48595703-48595722 None:intergenic 35.0%
AACCATGTGTAGAATGCTTA+CGG + chr2.1:48593812-48593831 MS.gene85612:intron 35.0%
AAGTATGATGCAAACTCTGT+TGG - chr2.1:48594528-48594547 None:intergenic 35.0%
ACATTCCACATAACTCCTAA+AGG - chr2.1:48593263-48593282 None:intergenic 35.0%
AGAATTCTACCCATTGCTAA+TGG - chr2.1:48594894-48594913 None:intergenic 35.0%
AGGAATAGCCTAGTTTACTA+AGG - chr2.1:48592684-48592703 None:intergenic 35.0%
AGTCAAAAACAGACATTGAG+TGG - chr2.1:48592985-48593004 None:intergenic 35.0%
ATAGACAAGCAAAGCATGAT+TGG - chr2.1:48592947-48592966 None:intergenic 35.0%
CAATGTATATACATGAGGGA+CGG + chr2.1:48592837-48592856 MS.gene85612:intron 35.0%
CACTAGAAGAAAACAATGCA+AGG - chr2.1:48594275-48594294 None:intergenic 35.0%
CATCATACTTCCATTATTGC+CGG + chr2.1:48594538-48594557 MS.gene85612:CDS 35.0%
CATGCAAGATAGATAAAGAC+AGG - chr2.1:48595121-48595140 None:intergenic 35.0%
CCAGCTTGAATTCAAGATTT+AGG - chr2.1:48593220-48593239 None:intergenic 35.0%
CCCCACAAAATCTATTTGTA+AGG - chr2.1:48593128-48593147 None:intergenic 35.0%
CCTAAATCTTGAATTCAAGC+TGG + chr2.1:48593217-48593236 MS.gene85612:intron 35.0%
CGAGAAAATCAGTGAAAAGA+AGG + chr2.1:48594382-48594401 MS.gene85612:CDS 35.0%
GAAAATGCTGAGTACAATCT+TGG - chr2.1:48595579-48595598 None:intergenic 35.0%
GAATTATGAAACTGCACTCA+AGG + chr2.1:48596311-48596330 MS.gene85612:CDS 35.0%
GGACAAAGAATTTCACAAAG+TGG + chr2.1:48596237-48596256 MS.gene85612:CDS 35.0%
GGACAAATTGTGATTCTTCT+CGG + chr2.1:48593866-48593885 MS.gene85612:intron 35.0%
GTCAAAAACAGACATTGAGT+GGG - chr2.1:48592984-48593003 None:intergenic 35.0%
GTGAACAATTGTGACAGAAA+AGG - chr2.1:48595706-48595725 None:intergenic 35.0%
GTGGGTAGGTTTGATATAAT+TGG + chr2.1:48594422-48594441 MS.gene85612:intron 35.0%
TAAAAAGAGCAGCAAAGAAC+AGG - chr2.1:48591916-48591935 None:intergenic 35.0%
TAAATAGGCTAACAAGGAGA+TGG - chr2.1:48595741-48595760 None:intergenic 35.0%
TAATCTCAGAGTCTATGGTT+GGG + chr2.1:48591371-48591390 MS.gene85612:intron 35.0%
TAGAAGAAAACTGAGGGAAT+TGG - chr2.1:48595208-48595227 None:intergenic 35.0%
TCAAACCTTCACGAATAAAC+AGG - chr2.1:48594620-48594639 None:intergenic 35.0%
TCCTAATTGTTAGACCTTGA+TGG + chr2.1:48592700-48592719 MS.gene85612:intron 35.0%
TGGAATACATAACAAGGCAT+TGG - chr2.1:48594486-48594505 None:intergenic 35.0%
TGTAAGGTGAAGATTGTCAA+AGG - chr2.1:48593112-48593131 None:intergenic 35.0%
TGTAGCTAGTTACTAGATTC+TGG + chr2.1:48591844-48591863 MS.gene85612:intron 35.0%
TGTGAATGCCTTAGTAAACT+AGG + chr2.1:48592673-48592692 MS.gene85612:intron 35.0%
TTAATCTCAGAGTCTATGGT+TGG + chr2.1:48591370-48591389 MS.gene85612:intron 35.0%
TTATCAAGTGCCAATGTCTT+GGG + chr2.1:48596090-48596109 MS.gene85612:CDS 35.0%
TTCCCATAATCTTACAGGAA+GGG + chr2.1:48595865-48595884 MS.gene85612:intron 35.0%
TTCCCTTCCTGTAAGATTAT+GGG - chr2.1:48595870-48595889 None:intergenic 35.0%
TTGCTTAATGTGCATCAAAG+TGG + chr2.1:48594097-48594116 MS.gene85612:intron 35.0%
TTGTCCACTTGAATGTATGA+TGG - chr2.1:48596223-48596242 None:intergenic 35.0%
TTTCCCATAATCTTACAGGA+AGG + chr2.1:48595864-48595883 MS.gene85612:intron 35.0%
! AATGCCTTGTTATGTATTCC+AGG + chr2.1:48594485-48594504 MS.gene85612:intron 35.0%
! AATTCTCATGCCTGTGTTTT+AGG + chr2.1:48594908-48594927 MS.gene85612:intron 35.0%
! AGAGATGATTTAGAGTCTGT+TGG + chr2.1:48594185-48594204 MS.gene85612:CDS 35.0%
! ATGTTATGTTTAGGTTACCG+TGG + chr2.1:48595089-48595108 MS.gene85612:intron 35.0%
! ATTAAATGGTTTGGAGTGGA+GGG + chr2.1:48592157-48592176 MS.gene85612:CDS 35.0%
! ATTCTCATGCCTGTGTTTTA+GGG + chr2.1:48594909-48594928 MS.gene85612:intron 35.0%
! CTTTGCTGCTCTTTTTAATC+AGG + chr2.1:48591919-48591938 MS.gene85612:intron 35.0%
! GAGATCTTTTCCATTAGCAA+TGG + chr2.1:48594881-48594900 MS.gene85612:intron 35.0%
! GGTCATTAAGGTTTGATGAT+AGG + chr2.1:48594559-48594578 MS.gene85612:CDS 35.0%
! GGTCTCGAAATATTCTTTTG+AGG - chr2.1:48594599-48594618 None:intergenic 35.0%
! TATTAAATGGTTTGGAGTGG+AGG + chr2.1:48592156-48592175 MS.gene85612:CDS 35.0%
! TTACACGCACAAGCATTTTA+AGG - chr2.1:48591215-48591234 None:intergenic 35.0%
! TTTCTCGTACTTTTCTCTCT+TGG - chr2.1:48594369-48594388 None:intergenic 35.0%
!!! CTTTTGAGGTATGCATAATC+TGG - chr2.1:48594585-48594604 None:intergenic 35.0%
!!! GGCTTTGAGGTATTGAATTT+TGG + chr2.1:48593333-48593352 MS.gene85612:intron 35.0%
AAAACAACAGCAGCCAAACT+AGG - chr2.1:48593930-48593949 None:intergenic 40.0%
AAAGTGGACCTTTAGATCCA+AGG + chr2.1:48596253-48596272 MS.gene85612:CDS 40.0%
AAGCCCATGAGGAAATTATC+TGG - chr2.1:48592456-48592475 None:intergenic 40.0%
AAGGCCTGGAATACATAACA+AGG - chr2.1:48594492-48594511 None:intergenic 40.0%
AAGTTGTACAGAATGCTGCA+AGG + chr2.1:48591983-48592002 MS.gene85612:CDS 40.0%
AATCTTACAGGAAGGGAAGA+AGG + chr2.1:48595872-48595891 MS.gene85612:intron 40.0%
AATCTTGAATTCAAGCTGGG+CGG + chr2.1:48593221-48593240 MS.gene85612:intron 40.0%
ACCTGTAAGGAATGTGTTGA+TGG - chr2.1:48592635-48592654 None:intergenic 40.0%
ACCTTAATGACCGGCAATAA+TGG - chr2.1:48594551-48594570 None:intergenic 40.0%
ACTCTGTACTTGAACTTTGC+TGG + chr2.1:48591800-48591819 MS.gene85612:intron 40.0%
AGATAATTTCCTCATGGGCT+TGG + chr2.1:48592455-48592474 MS.gene85612:CDS 40.0%
ATCTTACAGGAAGGGAAGAA+GGG + chr2.1:48595873-48595892 MS.gene85612:intron 40.0%
ATGTCTTGATGTACTTCCTC+AGG + chr2.1:48594210-48594229 MS.gene85612:CDS 40.0%
ATTCTAAATCGCTTCTCCAC+CGG + chr2.1:48592421-48592440 MS.gene85612:CDS 40.0%
CAAACTCAACACGTTTGATC+TGG - chr2.1:48592398-48592417 None:intergenic 40.0%
CCGTTTGAAAAACTAGTCAC+CGG - chr2.1:48593521-48593540 None:intergenic 40.0%
CTAGAAGATGTTACTCTCCT+TGG - chr2.1:48596273-48596292 None:intergenic 40.0%
CTATTAGCATTAGCCATAGC+AGG - chr2.1:48594966-48594985 None:intergenic 40.0%
CTTAATGCTGGAACTAGTTC+TGG + chr2.1:48594933-48594952 MS.gene85612:CDS 40.0%
CTTCCCTTCCTGTAAGATTA+TGG - chr2.1:48595871-48595890 None:intergenic 40.0%
GAAAGCCCAAAAGCTCAATA+TGG - chr2.1:48595831-48595850 None:intergenic 40.0%
GAAGGTTTCTACTTCGATTG+AGG + chr2.1:48594400-48594419 MS.gene85612:CDS 40.0%
GATAATTTCCTCATGGGCTT+GGG + chr2.1:48592456-48592475 MS.gene85612:CDS 40.0%
GATCGTATATACCAATGCCA+AGG - chr2.1:48594058-48594077 None:intergenic 40.0%
GCCATCAAGGTCTAACAATT+AGG - chr2.1:48592704-48592723 None:intergenic 40.0%
GCTAATGCTAATAGACACAC+AGG + chr2.1:48594972-48594991 MS.gene85612:CDS 40.0%
GGCATAGGCAAAAAAACAGA+AGG - chr2.1:48592377-48592396 None:intergenic 40.0%
GTATATACCAATGCCAAGGT+GGG - chr2.1:48594054-48594073 None:intergenic 40.0%
GTTACTCTCCTTGGATCTAA+AGG - chr2.1:48596264-48596283 None:intergenic 40.0%
GTTATCAAGTGCCAATGTCT+TGG + chr2.1:48596089-48596108 MS.gene85612:intron 40.0%
GTTTCTACTTCGATTGAGGT+GGG + chr2.1:48594404-48594423 MS.gene85612:intron 40.0%
TCAATTCCACTATGCCATCA+AGG - chr2.1:48592717-48592736 None:intergenic 40.0%
TCCATTATTGCCGGTCATTA+AGG + chr2.1:48594547-48594566 MS.gene85612:CDS 40.0%
TGCAATGGCTAGAGATTTGA+AGG + chr2.1:48593075-48593094 MS.gene85612:intron 40.0%
TGGTCAGTATAATACGTGTG+TGG + chr2.1:48595041-48595060 MS.gene85612:intron 40.0%
TGGTTTCAGTAAACTCTTCG+AGG + chr2.1:48595909-48595928 MS.gene85612:CDS 40.0%
TGTCTTGATGTACTTCCTCA+GGG + chr2.1:48594211-48594230 MS.gene85612:CDS 40.0%
TTGCAGCATTCTGTACAACT+TGG - chr2.1:48591984-48592003 None:intergenic 40.0%
TTTAAGTGGAGCGATCCTTT+AGG + chr2.1:48593245-48593264 MS.gene85612:intron 40.0%
TTTGAAAAACTAGTCACCGG+AGG - chr2.1:48593518-48593537 None:intergenic 40.0%
! AGTGCTTTGTTGAAACCCAT+TGG + chr2.1:48594291-48594310 MS.gene85612:intron 40.0%
! CCTGTAAGGAATGTGTTGAT+GGG - chr2.1:48592634-48592653 None:intergenic 40.0%
! CGTGCTACTGAAGATATCAA+TGG + chr2.1:48596192-48596211 MS.gene85612:CDS 40.0%
! GACGATACTTTAGAAGGGTT+TGG + chr2.1:48593041-48593060 MS.gene85612:intron 40.0%
! GATACTTTAGAAGGGTTTGG+AGG + chr2.1:48593044-48593063 MS.gene85612:intron 40.0%
! TACCACGCTATTGATAACTG+TGG - chr2.1:48593479-48593498 None:intergenic 40.0%
! TATCTGGTTTAATATCCCGG+TGG - chr2.1:48592440-48592459 None:intergenic 40.0%
! TATTGAGCTTTTGGGCTTTC+TGG + chr2.1:48595831-48595850 MS.gene85612:intron 40.0%
!! CAAGTTTTATCTTGGCAGCT+GGG + chr2.1:48592125-48592144 MS.gene85612:intron 40.0%
!! GACATTATGGCGTTGATTGT+GGG + chr2.1:48593732-48593751 MS.gene85612:intron 40.0%
!! GTTCTAGTAATGGATCTGCT+TGG + chr2.1:48592190-48592209 MS.gene85612:CDS 40.0%
!! TCAAGTTTTATCTTGGCAGC+TGG + chr2.1:48592124-48592143 MS.gene85612:intron 40.0%
!! TCTATGGTTGGGTATTGGAT+TGG + chr2.1:48591382-48591401 MS.gene85612:intron 40.0%
!! TTCTCATGCCTGTGTTTTAG+GGG + chr2.1:48594910-48594929 MS.gene85612:intron 40.0%
!!! CCGGTGACTAGTTTTTCAAA+CGG + chr2.1:48593518-48593537 MS.gene85612:intron 40.0%
!!! CGGTGACTAGTTTTTCAAAC+GGG + chr2.1:48593519-48593538 MS.gene85612:intron 40.0%
ACGTAAACAACTTAGCCACC+TGG - chr2.1:48592494-48592513 None:intergenic 45.0%
ACGTGTGTGGATGCTTTCTT+TGG + chr2.1:48595054-48595073 MS.gene85612:intron 45.0%
AGAGGTAGTCAAATCGCTAG+AGG + chr2.1:48593633-48593652 MS.gene85612:intron 45.0%
AGGTGGCTAAGTTGTTTACG+TGG + chr2.1:48592493-48592512 MS.gene85612:intron 45.0%
ATATGCAGTCTTCCTTGGCA+AGG + chr2.1:48594329-48594348 MS.gene85612:intron 45.0%
ATGAATACCCACCTTGGCAT+TGG + chr2.1:48594044-48594063 MS.gene85612:CDS 45.0%
CAACACGTTTGATCTGGCAT+AGG - chr2.1:48592392-48592411 None:intergenic 45.0%
CAGAGTCTATGGTTGGGTAT+TGG + chr2.1:48591377-48591396 MS.gene85612:intron 45.0%
CCCATCAACACATTCCTTAC+AGG + chr2.1:48592631-48592650 MS.gene85612:CDS 45.0%
CGAGACCTGTTTATTCGTGA+AGG + chr2.1:48594612-48594631 MS.gene85612:CDS 45.0%
CGTATATACCAATGCCAAGG+TGG - chr2.1:48594055-48594074 None:intergenic 45.0%
CTCGAAGATTGACACCAAAG+AGG - chr2.1:48594664-48594683 None:intergenic 45.0%
CTTACCATAGCAGCATCACT+AGG - chr2.1:48595995-48596014 None:intergenic 45.0%
GCAAGGTTGACAACAATGCA+AGG - chr2.1:48594258-48594277 None:intergenic 45.0%
GCAGGGTATGTTGCAAAAAG+TGG - chr2.1:48592060-48592079 None:intergenic 45.0%
GCATTAAGCCCCTAAAACAC+AGG - chr2.1:48594921-48594940 None:intergenic 45.0%
GGTTTCTACTTCGATTGAGG+TGG + chr2.1:48594403-48594422 MS.gene85612:intron 45.0%
GTAATAATCACCTTCCCCTG+AGG - chr2.1:48594229-48594248 None:intergenic 45.0%
GTCTTGATGTACTTCCTCAG+GGG + chr2.1:48594212-48594231 MS.gene85612:CDS 45.0%
TAGCATTAGCCATAGCAGGA+GGG - chr2.1:48594962-48594981 None:intergenic 45.0%
TATGCAGTCTTCCTTGGCAA+GGG + chr2.1:48594330-48594349 MS.gene85612:intron 45.0%
TGCCACAGTTATCAATAGCG+TGG + chr2.1:48593474-48593493 MS.gene85612:intron 45.0%
TGCCGTAAGCATTCTACACA+TGG - chr2.1:48593817-48593836 None:intergenic 45.0%
TGTTGGATAACCTCGACACA+AGG - chr2.1:48594511-48594530 None:intergenic 45.0%
TTAGCATTAGCCATAGCAGG+AGG - chr2.1:48594963-48594982 None:intergenic 45.0%
TTCTAAATCGCTTCTCCACC+GGG + chr2.1:48592422-48592441 MS.gene85612:CDS 45.0%
TTGGACTCATACAGCAACTG+AGG - chr2.1:48591965-48591984 None:intergenic 45.0%
! ATGCTTGCTGAGCAAATGGT+AGG + chr2.1:48592274-48592293 MS.gene85612:intron 45.0%
! GCGATCCTTTAGGAGTTATG+TGG + chr2.1:48593255-48593274 MS.gene85612:intron 45.0%
! GTTAGACCTTGATGGCATAG+TGG + chr2.1:48592708-48592727 MS.gene85612:intron 45.0%
! TCTCATGCTTGCTGAGCAAA+TGG + chr2.1:48592270-48592289 MS.gene85612:CDS 45.0%
! TTTCTTTGGTTCAGGAAGGG+AGG - chr2.1:48591452-48591471 None:intergenic 45.0%
!! ATGGCGTTGATTGTGGGATA+AGG + chr2.1:48593738-48593757 MS.gene85612:intron 45.0%
!! GGACATTATGGCGTTGATTG+TGG + chr2.1:48593731-48593750 MS.gene85612:intron 45.0%
!!! GTGTTTTAGGGGCTTAATGC+TGG + chr2.1:48594921-48594940 MS.gene85612:intron 45.0%
!!! TTATTTTGTAATTTTTTAAA+AGG - chr2.1:48596043-48596062 None:intergenic 5.0%
AGCAGTAGCCGCAATGCATT+TGG + chr2.1:48596144-48596163 MS.gene85612:CDS 50.0%
AGTAGCCGCAATGCATTTGG+CGG + chr2.1:48596147-48596166 MS.gene85612:CDS 50.0%
AGTGGATCAAGGCGACTTCA+TGG + chr2.1:48596120-48596139 MS.gene85612:CDS 50.0%
ATAGCAGCATCACTAGGACC+GGG - chr2.1:48595989-48596008 None:intergenic 50.0%
CATAGCAGCATCACTAGGAC+CGG - chr2.1:48595990-48596009 None:intergenic 50.0%
CTACTTCGATTGAGGTGGGT+AGG + chr2.1:48594408-48594427 MS.gene85612:intron 50.0%
CTCTTCGAGGCGAAGAATGT+CGG + chr2.1:48595922-48595941 MS.gene85612:CDS 50.0%
GAAAAGGTGGAAGACGAGCT+AGG - chr2.1:48595690-48595709 None:intergenic 50.0%
GCTAGCATGAATACCCACCT+TGG + chr2.1:48594038-48594057 MS.gene85612:CDS 50.0%
TCTTCGAGGCGAAGAATGTC+GGG + chr2.1:48595923-48595942 MS.gene85612:CDS 50.0%
TGATGTACTTCCTCAGGGGA+AGG + chr2.1:48594216-48594235 MS.gene85612:CDS 50.0%
! ATGCTGCAAGGAGAGCGTAA+TGG + chr2.1:48591995-48592014 MS.gene85612:intron 50.0%
! CACTAGGACCGGGATTTTTC+TGG - chr2.1:48595979-48595998 None:intergenic 50.0%
! CTTTAGAAGGGTTTGGAGGC+TGG + chr2.1:48593048-48593067 MS.gene85612:intron 50.0%
! TCAAGCTGGGCGGATTTAAG+TGG + chr2.1:48593231-48593250 MS.gene85612:intron 50.0%
!! AGAAGGGCGTCATTCTGGTA+TGG + chr2.1:48595889-48595908 MS.gene85612:CDS 50.0%
!! TTCTGGAATCCCTCCTGCTA+TGG + chr2.1:48594950-48594969 MS.gene85612:CDS 50.0%
AATGTCTTGGGCGAGTCGAG+TGG + chr2.1:48596102-48596121 MS.gene85612:CDS 55.0%
CAGCACCGCCAAATGCATTG+CGG - chr2.1:48596155-48596174 None:intergenic 55.0%
CCACTTACGATAGCACGTGC+TGG - chr2.1:48594836-48594855 None:intergenic 55.0%
CCAGCACGTGCTATCGTAAG+TGG + chr2.1:48594833-48594852 MS.gene85612:intron 55.0%
CGGTCCTAGTGATGCTGCTA+TGG + chr2.1:48595988-48596007 MS.gene85612:CDS 55.0%
CTTACGATAGCACGTGCTGG+AGG - chr2.1:48594833-48594852 None:intergenic 55.0%
CTTGGGAAAGCGGGAAAACC+AGG + chr2.1:48592473-48592492 MS.gene85612:CDS 55.0%
GATAACCTCGACACAAGGCC+TGG - chr2.1:48594506-48594525 None:intergenic 55.0%
TAGCAGCGTATAGCTGCCTC+CGG + chr2.1:48593499-48593518 MS.gene85612:intron 55.0%
TCCTCATGGGCTTGGGAAAG+CGG + chr2.1:48592463-48592482 MS.gene85612:CDS 55.0%
TTGGAGGCTGGCAGTTGCAA+TGG + chr2.1:48593060-48593079 MS.gene85612:intron 55.0%
! ACTCGACTCGCCCAAGACAT+TGG - chr2.1:48596103-48596122 None:intergenic 55.0%
! GTATTCCAGGCCTTGTGTCG+AGG + chr2.1:48594498-48594517 MS.gene85612:intron 55.0%
!! AACTGCACTCAAGGGCATCG+AGG + chr2.1:48596320-48596339 MS.gene85612:CDS 55.0%
!! ACTGCACTCAAGGGCATCGA+GGG + chr2.1:48596321-48596340 MS.gene85612:CDS 55.0%
!! AGGGAAGAAGGGCGTCATTC+TGG + chr2.1:48595884-48595903 MS.gene85612:CDS 55.0%
CCTCATGGGCTTGGGAAAGC+GGG + chr2.1:48592464-48592483 MS.gene85612:CDS 60.0%
CGTGCTTGAAGCCCTTGCCA+AGG - chr2.1:48594344-48594363 None:intergenic 60.0%
GGGAAAGCGGGAAAACCAGG+TGG + chr2.1:48592476-48592495 MS.gene85612:intron 60.0%
TGGGCGAGTCGAGTGGATCA+AGG + chr2.1:48596109-48596128 MS.gene85612:CDS 60.0%
CCCGCTTTCCCAAGCCCATG+AGG - chr2.1:48592467-48592486 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 48591180 48596377 48591180 ID=MS.gene85612
chr2.1 mRNA 48591180 48596377 48591180 ID=MS.gene85612.t1;Parent=MS.gene85612
chr2.1 exon 48591180 48591185 48591180 ID=MS.gene85612.t1.exon1;Parent=MS.gene85612.t1
chr2.1 CDS 48591180 48591185 48591180 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48591941 48592010 48591941 ID=MS.gene85612.t1.exon2;Parent=MS.gene85612.t1
chr2.1 CDS 48591941 48592010 48591941 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48592143 48592291 48592143 ID=MS.gene85612.t1.exon3;Parent=MS.gene85612.t1
chr2.1 CDS 48592143 48592291 48592143 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48592399 48592494 48592399 ID=MS.gene85612.t1.exon4;Parent=MS.gene85612.t1
chr2.1 CDS 48592399 48592494 48592399 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48592582 48592652 48592582 ID=MS.gene85612.t1.exon5;Parent=MS.gene85612.t1
chr2.1 CDS 48592582 48592652 48592582 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594004 48594065 48594004 ID=MS.gene85612.t1.exon6;Parent=MS.gene85612.t1
chr2.1 CDS 48594004 48594065 48594004 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594174 48594237 48594174 ID=MS.gene85612.t1.exon7;Parent=MS.gene85612.t1
chr2.1 CDS 48594174 48594237 48594174 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594337 48594421 48594337 ID=MS.gene85612.t1.exon8;Parent=MS.gene85612.t1
chr2.1 CDS 48594337 48594421 48594337 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594507 48594633 48594507 ID=MS.gene85612.t1.exon9;Parent=MS.gene85612.t1
chr2.1 CDS 48594507 48594633 48594507 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594765 48594847 48594765 ID=MS.gene85612.t1.exon10;Parent=MS.gene85612.t1
chr2.1 CDS 48594765 48594847 48594765 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48594930 48594993 48594930 ID=MS.gene85612.t1.exon11;Parent=MS.gene85612.t1
chr2.1 CDS 48594930 48594993 48594930 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48595882 48596009 48595882 ID=MS.gene85612.t1.exon12;Parent=MS.gene85612.t1
chr2.1 CDS 48595882 48596009 48595882 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
chr2.1 exon 48596090 48596377 48596090 ID=MS.gene85612.t1.exon13;Parent=MS.gene85612.t1
chr2.1 CDS 48596090 48596377 48596090 ID=cds.MS.gene85612.t1;Parent=MS.gene85612.t1
Gene Sequence

>MS.gene85612

ATGGAAGTGAAATTTTTCCTTTTACTATTTCACCTTAAAATGCTTGTGCGTGTAATATGCAACTGCTTTTTGCAAGATAAAAGAAGAGTTTCAGTTCCCAGATATTTGAAACATACCATGCATATTACAATTAATCAAGTCTCCTCAGAAAAATATTGGCATATTCCTTTCTATTCAAAATTCTTATATGTTAATCTCAGAGTCTATGGTTGGGTATTGGATTGGAAGAAATGACATGATTATTTAATCCTGTAATTAATAATCTTTCTCCTCCCTTCCTGAACCAAAGAAAATAAACTTTTGTTAACATGTGACCCGAGTTTCTCTAATTTATTCATTATTTAATCACTTAAAGGTTTACCATATGTGTAGAAAGTAGACATGAAAATAACTATTTTTTATAGTTGAAAACGAAGCGGTCGTCAGTTGCCATTAATAGAAGTAACAGAACCAGTTTCTAACAAAATAATGTATGCTTCATTGGAAAATTTGATGATTAGACTGCAATGCTAGTCTTTGAAAAGATCCTTATATGTGAAATGAATCATCTGTCAAATCATATACTTATTGCTCCGCAAAATTATTAAAATTGAGTAACATCTATTCCTGATATATTCTCTACTCTGTACTTGAACTTTGCTGGTAATTTTGGGCATTGTTTTTCTGTAGCTAGTTACTAGATTCTGGATGTCTCTTAGTGCTAGAGATCTGACTTTGTTGTTACTTTTTGCTTCCTGTTCTTTGCTGCTCTTTTTAATCAGGAAAATGTCAGGACAAAGAATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATGCTGCAAGGAGAGCGTAATGGCCGTTTTCATAAGCATATAACTTTTTTTTATTTTTTATTCCACTTTTTGCAACATACCCTGCTTTTGAATAATTGGTCTTATTTGTAACTTATAAATAGCTCTAACTCAAGTTTTATCTTGGCAGCTGGGATTCCAAATATTAAATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTTGAAGAGATGTTTAACTTCTGTAGTAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCTGAGCAAATGGTAGGTCCTATTTATACAATGATTTTTTTTTACTAAATACTCAGCCTACCATTGAACTAATAGTAAGTTAAAAAACTTTTATCCTTCTGTTTTTTTGCCTATGCCAGATCAAACGTGTTGAGTTTGTTCATTCTAAATCGCTTCTCCACCGGGATATTAAACCAGATAATTTCCTCATGGGCTTGGGAAAGCGGGAAAACCAGGTGGCTAAGTTGTTTACGTGGCCTTCTAATGTATTGTATATTCATGTTCATATATTAGGCATTTATTATATATTGGTTTATATGTAGGTTTACTGTATTGATTTTGGTTTAGCGAAGAAATATAGAGATAGTTCGACCCATCAACACATTCCTTACAGGTATGATGATTTAGTTGGTTTGTGAATGCCTTAGTAAACTAGGCTATTCCTAATTGTTAGACCTTGATGGCATAGTGGAATTGATATGCTCAATTTGAAATAATTTCGTCCAATATAGCTGTAACATTTTAATTTATCATAATACTTTTATTTTATTTTAATCTTCATATCGAAAAAATCTTAGCAATGTATATACATGAGGGACGGTTTATATGTATGATTTTTTTATTATGTAATTCAAAGTTTGCGTTATAAAACATTTTTTTGTCAGTATTATCGTGAGTAGATTAACCAATCATGCTTTGCTTGTCTATTGTTGTTTTGATCGCCCACTCAATGTCTGTTTTTGACTAGTATGATGATGCTCTGAATGTCAGTCTATTCATTAGACGATACTTTAGAAGGGTTTGGAGGCTGGCAGTTGCAATGGCTAGAGATTTGAAGGAAGCTTTAAAACCTTTGACAATCTTCACCTTACAAATAGATTTTGTGGGGTTAAGTTAGACACAAAATCTAAGTTGTATAAAATCTCCTCATACAAAGTGATGAATAAGTAGTAGGAGACCTAAATCTTGAATTCAAGCTGGGCGGATTTAAGTGGAGCGATCCTTTAGGAGTTATGTGGAATGTTAAAGCTCCTTTTGACTTATAAAGAAAACTATATTGAAAAAGACTAATGAGGCTTTGAGGTATTGAATTTTGGAGGATAAAGGGATAAAAGAGATAAAGATAAGATTGAAAAATATGAGCATGTTCTGTTGACTGCAAGAAAAGATAAGATTTTGAATGAATGTTTTGGAGAGAAAGTTAGAACATCTATTTGCCACAGTTATCAATAGCGTGGTATAGCAGCGTATAGCTGCCTCCGGTGACTAGTTTTTCAAACGGGAGTTGTTGCTTTTATGCTATTGTATTTACTATCACTAAAATAAAAAATACCATTTTGGATCTTATTGACACAATTTTTGTAAATATCAAATAGAGGTAGTCAAATCGCTAGAGGTAGACCTATAAAAACTATAAGAGATTAAGAAATACCTAGAGATTAATAAGTTGAATAAATATATGATATATGAGAGGACATTATGGCGTTGATTGTGGGATAAGGCCTGATTGTTGTTGTTTTATAGGCCGGTGATATAAGAACTATATCAAAATTAACCATGTGTAGAATGCTTACGGCATTTCTATTTCATCAAAACTTTGTTTTTCAGGACAAATTGTGATTCTTCTCGGTGATATTTCATCCATATTTAGACCCTAATTTTATATAGCCTAGTTTGGCTGCTGTTGTTTTAGTATTAATTTATTGTGAATGTAACTTGTAATGTATTTCATTTTGAAACAACAGGGAAAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACCCACCTTGGCATTGGTATATACGATCTCTTGATACTTACTTAGCATTGCTTAATGTGCATCAAAGTGGTATTATCTAACATATTTTTGTTGCTTGATTCTATTTTTCCGATCATTACTATAGAGCAAAGTCGAAGAGATGATTTAGAGTCTGTTGGTTATGTCTTGATGTACTTCCTCAGGGGAAGGTGATTATTACTGTCAACCTTGCATTGTTGTCAACCTTGCATTGTTTTCTTCTAGTGCTTTGTTGAAACCCATTGGATTGATTTTCATTTTATATGCAGTCTTCCTTGGCAAGGGCTTCAAGCACGAACCAAGAGAGAAAAGTACGAGAAAATCAGTGAAAAGAAGGTTTCTACTTCGATTGAGGTGGGTAGGTTTGATATAATTGGCCTTTGAATACGTAATATGCACTATATCTTAAATTGTACCAATGCCTTGTTATGTATTCCAGGCCTTGTGTCGAGGTTATCCAACAGAGTTTGCATCATACTTCCATTATTGCCGGTCATTAAGGTTTGATGATAGGCCAGATTATGCATACCTCAAAAGAATATTTCGAGACCTGTTTATTCGTGAAGGTTTGAAACTATTCTCATAAAAAAACACCTCTTTGGTGTCAATCTTCGAGTTTATTTTATATATGCTTGCAGGATTTGCTCTTCAATCTATTGCTGCAAATTGATTCATTATCATATTGGCATTTGAACAGGGTTCCAGTCTGATTACATCTTTGATTGGACAATCTTGAAGTATCAGCAATCACAGCTAATCACTCCTCCAGCACGTGCTATCGTAAGTGGTTTTCTCTATATTTTTTTCTCGTTTGAGATCTTTTCCATTAGCAATGGGTAGAATTCTCATGCCTGTGTTTTAGGGGCTTAATGCTGGAACTAGTTCTGGAATCCCTCCTGCTATGGCTAATGCTAATAGACACACAGGTAATTTCTTTGTTGTTTCTGTTTCCTTTTTGACATTAAATTTAGTTTGGTCAGTATAATACGTGTGTGGATGCTTTCTTTGGCAAATTTAAGTCATGTTATGTTTAGGTTACCGTGGTTTAAACCTGTCTTTATCTATCTTGCATGCACCAATATTATTTAGCTTTATTAAATTTATTTGGGAAGAATGACTAAGGACTCGTTTTCTTTTCCAATTCCCTCAGTTTTCTTCTACAATTTTTGAAAACAGATCTAGTATATTTCAAAATTTTGAAAATGTCAACATTTTTCTCATTATTTCTGAAAATGCATTATTTTTAAAATGAACATACATTAGTCTTTCATGTCGTTTGATATTGTTATTCACTAAACTATTCTATCATCTTCTTGTTTGATATTTTCAATGAACATAAATTTAAAAAAATGAAAACTTAGAATATTATTAGAAAGTAAAAGGGGCTTAATTTTTTGTCTCCTATTTGTTGCTATTGCTCTGATGTTGTCTTTATTTTTCATGGCCATTTACTTTCCATTCTATGTGTTCATTTTCACTTCAACTAATAAACATAAAATAATACAGATCCAAGATTGTACTCAGCATTTTCTTTTACAATTTTCTATAACAGATCTAGCAATTTTAGAAATTTTGAAATGTCAAAACATTGTTTTCATTGTTCTTGAAAATGCTTTCTTCCTAGCTCGTCTTCCACCTTTTCTGTCACAATTGTTCACGATAAGAGTCTTCCATCTCCTTGTTAGCCTATTTAAAATGAATACTGAAAATATTTTTAGAAAGTAAACAGAGTCTTTCTAATAGGTTTTATGTATTTTTTGCCATATTGAGCTTTTGGGCTTTCTGGTTCTACTTTTTTTCCCATAATCTTACAGGAAGGGAAGAAGGGCGTCATTCTGGTATGGTTTCAGTAAACTCTTCGAGGCGAAGAATGTCGGGACCCATTTTAAATTCTGTAAATATTTCAAACCAGAAAAATCCCGGTCCTAGTGATGCTGCTATGGTAAGATCTTTTGCAAATTTCCTTCAGTTTCCTTTTAAAAAATTACAAAATAATTTGATGTGTTGTGTCAAATCATGCAGTTATCAAGTGCCAATGTCTTGGGCGAGTCGAGTGGATCAAGGCGACTTCATGGTAGCAGTAGCCGCAATGCATTTGGCGGTGCTGATTCAAATTTTCGTGCTCGTGCTACTGAAGATATCAATGGAAAAGCCATCATACATTCAAGTGGACAAAGAATTTCACAAAGTGGACCTTTAGATCCAAGGAGAGTAACATCTTCTAGAAATAGTTCTCATATCAAGAATTATGAAACTGCACTCAAGGGCATCGAGGGTTTGAAATTAAAAAATGTCGATTCCCATCAATAA
Protein sequence

>MS.gene85612.t1

MEENVRTKNPQLLYESKLYRMLQGEPGIPNIKWFGVEGDYNVLVMDLLGPSLEEMFNFCSRKLSLKTVLMLAEQMIKRVEFVHSKSLLHRDIKPDNFLMGLGKRENQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESVGYVLMYFLRGSLPWQGLQARTKREKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQSDYIFDWTILKYQQSQLITPPARAIGLNAGTSSGIPPAMANANRHTGREEGRHSGMVSVNSSRRRMSGPILNSVNISNQKNPGPSDAAMLSSANVLGESSGSRRLHGSSSRNAFGGADSNFRARATEDINGKAIIHSSGQRISQSGPLDPRRVTSSRNSSHIKNYETALKGIEGLKLKNVDSHQ