AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85671

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85671.t1 MTR_2g027860 88.535 157 10 1 1 149 1 157 5.10e-83 254
MS.gene85671.t1 MTR_7g088070 71.698 106 25 2 49 149 50 155 1.89e-43 150
MS.gene85671.t1 MTR_7g088070 69.091 110 25 2 49 149 50 159 7.35e-43 149
MS.gene85671.t1 MTR_1g111560 79.412 102 19 1 149 248 488 589 5.08e-38 143
MS.gene85671.t1 MTR_7g098250 45.455 209 80 9 33 233 252 434 7.21e-37 137
MS.gene85671.t1 MTR_1g053835 52.941 119 52 2 35 149 244 362 1.40e-33 127
MS.gene85671.t1 MTR_1g080330 59.259 108 38 1 48 149 174 281 3.25e-33 124
MS.gene85671.t1 MTR_1g080330 59.259 108 38 1 48 149 174 281 1.07e-32 124
MS.gene85671.t1 MTR_7g115530 58.333 108 39 2 48 149 217 324 1.44e-32 123
MS.gene85671.t1 MTR_7g115530 58.333 108 39 2 48 149 217 324 5.14e-32 124
MS.gene85671.t1 MTR_4g081710 46.341 123 49 2 44 149 12 134 7.51e-30 116
MS.gene85671.t1 MTR_7g093030 51.376 109 48 2 46 149 209 317 7.80e-30 117
MS.gene85671.t1 MTR_5g027440 50.862 116 39 2 52 149 28 143 3.33e-29 113
MS.gene85671.t1 MTR_6g444980 53.846 117 35 2 47 149 33 144 5.53e-29 114
MS.gene85671.t1 MTR_2g027800 50.442 113 52 2 44 152 34 146 6.72e-29 112
MS.gene85671.t1 MTR_6g444980 53.846 117 35 2 47 149 33 144 7.00e-29 114
MS.gene85671.t1 MTR_2g027800 45.669 127 51 2 44 152 34 160 3.43e-27 108
MS.gene85671.t1 MTR_2g086450 40.909 154 61 4 31 158 27 176 5.30e-27 109
MS.gene85671.t1 MTR_5g041350 41.129 124 55 2 44 149 10 133 3.56e-26 106
MS.gene85671.t1 MTR_1g090670 46.281 121 50 2 47 152 42 162 6.15e-26 104
MS.gene85671.t1 MTR_6g032990 44.776 134 48 3 47 158 40 169 1.44e-25 105
MS.gene85671.t1 MTR_7g068600 46.364 110 50 2 49 149 13 122 2.79e-24 99.0
MS.gene85671.t1 MTR_7g115530 69.492 59 18 0 48 106 217 275 6.07e-22 94.0
MS.gene85671.t1 MTR_1g053800 39.706 136 72 3 26 154 155 287 1.78e-21 92.8
MS.gene85671.t1 MTR_7g115530 69.492 59 18 0 48 106 217 275 2.67e-21 92.8
MS.gene85671.t1 MTR_7g093030 52.703 74 32 1 46 116 209 282 2.45e-20 89.4
MS.gene85671.t1 MTR_1g053830 43.750 80 45 0 35 114 4 83 1.36e-19 82.4
MS.gene85671.t1 MTR_2g023580 41.481 135 70 3 52 183 58 186 1.97e-19 85.9
MS.gene85671.t1 MTR_7g115530 69.811 53 16 0 48 100 217 269 3.13e-18 83.2
MS.gene85671.t1 MTR_7g115530 69.231 52 16 0 48 99 217 268 1.99e-17 81.3
MS.gene85671.t1 MTR_7g069660 62.963 54 20 0 52 105 74 127 2.44e-15 75.9
MS.gene85671.t1 MTR_8g066310 48.387 93 44 3 52 143 176 265 3.63e-15 75.5
MS.gene85671.t1 MTR_3g450310 59.259 54 22 0 52 105 22 75 6.35e-15 72.8
MS.gene85671.t1 MTR_6g071625 62.963 54 20 0 52 105 205 258 9.80e-15 74.3
MS.gene85671.t1 MTR_7g093010 34.194 155 89 4 13 154 171 325 2.08e-14 73.2
MS.gene85671.t1 MTR_8g086410 62.963 54 20 0 52 105 114 167 2.55e-14 73.2
MS.gene85671.t1 MTR_8g086410 62.963 54 20 0 52 105 112 165 2.70e-14 73.2
MS.gene85671.t1 MTR_2g016220 64.815 54 19 0 52 105 92 145 3.87e-14 72.4
MS.gene85671.t1 MTR_2g016220 64.815 54 19 0 52 105 92 145 4.43e-14 72.4
MS.gene85671.t1 MTR_2g084230 64.815 54 19 0 52 105 100 153 4.80e-14 71.6
MS.gene85671.t1 MTR_2g084230 64.815 54 19 0 52 105 100 153 5.10e-14 72.4
MS.gene85671.t1 MTR_5g029470 62.963 54 20 0 52 105 222 275 5.13e-14 72.4
MS.gene85671.t1 MTR_3g064840 62.963 54 20 0 52 105 277 330 6.65e-14 72.4
MS.gene85671.t1 MTR_1g021520 61.111 54 21 0 52 105 129 182 8.52e-14 70.9
MS.gene85671.t1 MTR_0223s0040 62.963 54 20 0 52 105 21 74 8.58e-14 70.9
MS.gene85671.t1 MTR_1g093080 41.284 109 56 3 2 102 156 264 1.19e-13 71.2
MS.gene85671.t1 MTR_1g112370 61.111 54 21 0 52 105 25 78 1.49e-13 70.5
MS.gene85671.t1 MTR_8g086410 60.784 51 20 0 52 102 114 164 1.39e-12 68.2
MS.gene85671.t1 MTR_2g016220 66.667 48 16 0 52 99 92 139 2.48e-12 67.4
MS.gene85671.t1 MTR_5g017980 61.111 54 21 0 49 102 193 246 3.88e-12 66.2
MS.gene85671.t1 MTR_1g093080 39.623 106 56 2 2 99 156 261 7.31e-12 65.1
MS.gene85671.t1 MTR_5g054300 44.000 75 38 1 49 119 198 272 2.90e-11 63.9
MS.gene85671.t1 MTR_4g113140 39.394 99 55 3 6 102 193 288 5.33e-11 63.5
MS.gene85671.t1 MTR_4g086835 57.407 54 23 0 49 102 274 327 6.13e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85671.t1 AT2G01060 53.947 228 75 9 43 262 9 214 2.32e-58 189
MS.gene85671.t1 AT4G28610 50.000 148 67 2 41 181 217 364 3.60e-35 132
MS.gene85671.t1 AT3G04450 39.500 200 91 5 30 220 181 359 1.81e-33 127
MS.gene85671.t1 AT3G04450 39.500 200 91 5 30 220 181 359 1.81e-33 127
MS.gene85671.t1 AT3G04450 39.500 200 91 5 30 220 221 399 3.90e-33 127
MS.gene85671.t1 AT5G29000 55.385 130 47 3 29 149 170 297 4.15e-33 125
MS.gene85671.t1 AT5G29000 55.385 130 47 3 29 149 170 297 4.15e-33 125
MS.gene85671.t1 AT5G29000 55.385 130 47 3 29 149 213 340 8.85e-33 125
MS.gene85671.t1 AT4G13640 53.782 119 37 2 52 152 40 158 9.87e-33 122
MS.gene85671.t1 AT1G79430 57.759 116 36 3 52 158 37 148 1.58e-32 124
MS.gene85671.t1 AT4G13640 54.310 116 35 2 52 149 40 155 1.66e-32 122
MS.gene85671.t1 AT3G13040 36.066 244 123 7 24 254 225 448 1.93e-32 125
MS.gene85671.t1 AT3G13040 36.066 244 123 7 24 254 225 448 1.93e-32 125
MS.gene85671.t1 AT3G13040 36.066 244 123 7 24 254 225 448 1.93e-32 125
MS.gene85671.t1 AT3G24120 41.808 177 78 4 52 203 44 220 2.83e-32 121
MS.gene85671.t1 AT3G24120 53.448 116 36 2 52 149 44 159 5.41e-32 120
MS.gene85671.t1 AT2G20400 54.545 121 48 3 52 165 234 354 6.63e-31 120
MS.gene85671.t1 AT2G01060 45.455 187 72 8 84 262 1 165 1.73e-30 115
MS.gene85671.t1 AT2G20400 53.279 122 49 3 52 165 234 355 1.92e-30 119
MS.gene85671.t1 AT5G06800 49.600 125 53 3 36 154 182 302 8.38e-30 116
MS.gene85671.t1 AT5G06800 48.062 129 54 3 36 154 182 307 3.39e-29 115
MS.gene85671.t1 AT1G69580 44.444 135 48 3 47 158 32 162 8.96e-28 110
MS.gene85671.t1 AT1G69580 45.588 136 46 4 47 158 32 163 2.08e-27 109
MS.gene85671.t1 AT5G18240 38.764 178 79 4 2 158 3 171 1.48e-26 108
MS.gene85671.t1 AT5G18240 38.764 178 79 4 2 158 3 171 1.48e-26 108
MS.gene85671.t1 AT5G18240 39.645 169 76 3 2 149 3 166 1.60e-26 108
MS.gene85671.t1 AT5G18240 39.645 169 76 3 2 149 3 166 1.60e-26 108
MS.gene85671.t1 AT5G18240 39.645 169 76 3 2 149 3 166 1.89e-26 107
MS.gene85671.t1 AT3G04030 40.994 161 62 6 23 158 19 171 2.64e-26 107
MS.gene85671.t1 AT3G04030 42.105 152 59 5 23 149 19 166 2.82e-26 107
MS.gene85671.t1 AT3G12730 47.619 126 48 5 52 163 26 147 2.10e-25 102
MS.gene85671.t1 AT5G45580 45.968 124 39 5 52 149 10 131 3.71e-24 99.4
MS.gene85671.t1 AT5G45580 45.968 124 39 5 52 149 26 147 4.51e-24 99.4
MS.gene85671.t1 AT3G04030 40.373 161 62 7 23 158 19 170 9.66e-24 100
MS.gene85671.t1 AT3G04450 53.571 84 37 1 30 113 221 302 1.59e-22 95.9
MS.gene85671.t1 AT5G29000 61.538 78 28 1 29 106 213 288 1.91e-21 92.8
MS.gene85671.t1 AT5G06800 60.317 63 25 0 45 107 188 250 6.38e-20 88.2
MS.gene85671.t1 AT5G04290 46.226 106 47 3 149 248 516 617 9.14e-18 84.3
MS.gene85671.t1 AT5G04290 46.226 106 47 3 149 248 516 617 9.16e-18 84.3
MS.gene85671.t1 AT2G40260 48.315 89 46 0 17 105 50 138 2.56e-16 79.3
MS.gene85671.t1 AT2G42660 66.667 54 18 0 52 105 53 106 3.31e-16 77.4
MS.gene85671.t1 AT4G04605 66.667 54 18 0 52 105 17 70 4.11e-16 76.3
MS.gene85671.t1 AT2G06020 51.613 62 30 0 44 105 81 142 1.45e-15 76.3
MS.gene85671.t1 AT1G32240 44.898 98 51 2 52 148 216 311 3.84e-15 75.5
MS.gene85671.t1 AT1G32240 44.898 98 51 2 52 148 216 311 4.26e-15 75.5
MS.gene85671.t1 AT2G38300 48.193 83 31 1 52 122 57 139 2.30e-14 73.2
MS.gene85671.t1 AT1G14600 64.815 54 19 0 52 105 26 79 2.92e-14 71.6
MS.gene85671.t1 AT5G42630 61.111 54 21 0 52 105 108 161 4.42e-14 70.5
MS.gene85671.t1 AT5G16560 62.963 54 20 0 52 105 222 275 4.73e-14 72.4
MS.gene85671.t1 AT4G17695 62.963 54 20 0 52 105 167 220 4.98e-14 72.0
MS.gene85671.t1 AT4G04580 37.500 104 63 1 52 155 17 118 7.78e-14 68.6
MS.gene85671.t1 AT2G02060 64.286 56 20 0 52 107 32 87 7.81e-14 70.5
MS.gene85671.t1 AT2G02060 64.286 56 20 0 52 107 32 87 7.81e-14 70.5
MS.gene85671.t1 AT5G42630 61.111 54 21 0 52 105 108 161 9.57e-14 70.5
MS.gene85671.t1 AT1G79430 48.276 87 32 3 81 158 1 83 3.06e-13 69.3
MS.gene85671.t1 AT4G37180 59.259 54 22 0 49 102 210 263 7.42e-13 68.6
MS.gene85671.t1 AT4G37180 59.259 54 22 0 49 102 217 270 7.89e-13 68.6
MS.gene85671.t1 AT3G25790 61.224 49 19 0 54 102 201 249 1.77e-12 67.8
MS.gene85671.t1 AT1G49560 61.111 54 21 0 49 102 192 245 6.68e-12 65.9
MS.gene85671.t1 AT1G13300 44.828 87 37 2 16 102 159 234 1.61e-11 64.7
MS.gene85671.t1 AT1G25550 57.143 56 24 0 47 102 207 262 6.17e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGCAATCCATTAGTTAA+TGG 0.290398 6.1:-18164173 MS.gene85671:CDS
ATGGCTCTTAACATGGTAAA+TGG 0.306660 6.1:+18163747 None:intergenic
CTCCGCGCCGCGATAGCGCC+GGG 0.342358 6.1:+18162127 None:intergenic
CCATGTTAAGAGCCATTTGC+AGG 0.349218 6.1:-18163740 MS.gene85671:intron
ATATGTTGACCATTAACTAA+TGG 0.354268 6.1:+18164164 None:intergenic
CGCCGCGATAGCGCCGGGAG+CGG 0.357422 6.1:+18162132 None:intergenic
GCTCCGCGCCGCGATAGCGC+CGG 0.369703 6.1:+18162126 None:intergenic
GATATGCTTTCCATTCTAGA+TGG 0.374580 6.1:-18163377 MS.gene85671:CDS
CATAACTCTGAGGACACCTT+TGG 0.375653 6.1:+18163786 None:intergenic
CAAAGGTGTCCTCAGAGTTA+TGG 0.377183 6.1:-18163785 MS.gene85671:CDS
AATGGTCAACATATAGATTC+TGG 0.392543 6.1:-18164155 MS.gene85671:CDS
TGAGTTGAGATTAAAGTTGT+TGG 0.397978 6.1:+18164091 None:intergenic
GTTGCTGATTCTAGTTTAGT+TGG 0.399312 6.1:-18164194 MS.gene85671:CDS
TTGTCAAACGCGGCCGCTCC+CGG 0.401595 6.1:-18162145 MS.gene85671:CDS
AAAGGTGTCCTCAGAGTTAT+GGG 0.402741 6.1:-18163784 MS.gene85671:CDS
TTTGTTGAGAGTGGTGATCT+TGG 0.403843 6.1:+18162553 None:intergenic
CGGAAATAGCGGCCGCGAAA+AGG 0.451746 6.1:-18162048 MS.gene85671:CDS
GATGAAAATGAGGAAGAAAA+TGG 0.461482 6.1:-18162789 MS.gene85671:CDS
AGTGGTGATCTTGGTGATGA+TGG 0.462542 6.1:+18162562 None:intergenic
GTTGATGCTGTGGCTCAACT+TGG 0.466308 6.1:-18164026 MS.gene85671:CDS
GAAGCGACTACATGAACAAT+TGG 0.469698 6.1:-18163081 MS.gene85671:CDS
ATTGTTAGACATGTCTATCA+AGG 0.476478 6.1:-18162828 MS.gene85671:CDS
ATAACTCTGAGGACACCTTT+GGG 0.476739 6.1:+18163787 None:intergenic
TTGTACTGTAGGTTAAGTTA+AGG 0.476875 6.1:-18160487 MS.gene85671:intron
GGTAGAAGCGCAATGGATCC+TGG 0.480877 6.1:-18164134 MS.gene85671:CDS
GGCGCTATCGCGGCGCGGAG+CGG 0.481361 6.1:-18162124 MS.gene85671:CDS
GGCCGCTCCCGGCGCTATCG+CGG 0.483112 6.1:-18162134 MS.gene85671:CDS
CTCAGAGTTATGGGTGTACA+AGG 0.485843 6.1:-18163775 MS.gene85671:CDS
TGAAGCACTAAAGCTTCAAA+TGG 0.488754 6.1:-18163111 MS.gene85671:CDS
TCACGATGAACCATCTAGAA+TGG 0.492563 6.1:+18163367 None:intergenic
AAAAGACTGACAAGAAAGAA+TGG 0.493256 6.1:-18163399 MS.gene85671:intron
CTTCACGCTATAACCTGGTA+AGG 0.500187 6.1:+18160404 None:intergenic
AAGTGCACATTACCTGCAAA+TGG 0.502884 6.1:+18163728 None:intergenic
AGCGCAATGGATCCTGGTAG+TGG 0.503101 6.1:-18164128 MS.gene85671:CDS
CCCTTAGGTGCCACACCCAA+AGG 0.505122 6.1:-18163802 MS.gene85671:intron
GCCACCGAGTCACGCGTTTG+TGG 0.506096 6.1:-18162075 MS.gene85671:CDS
GATGCTGTGGCTCAACTTGG+TGG 0.512420 6.1:-18164023 MS.gene85671:CDS
CTTTCCACAAACGCGTGACT+CGG 0.519555 6.1:+18162071 None:intergenic
CTAGAATCAGCAACATGTGT+TGG 0.520697 6.1:+18164203 None:intergenic
CCTGCAAATGGCTCTTAACA+TGG 0.525821 6.1:+18163740 None:intergenic
GCCATGGCAAGCAAAAGAAA+AGG 0.530423 6.1:-18162527 MS.gene85671:CDS
AATTTCTTCACGCTATAACC+TGG 0.535969 6.1:+18160399 None:intergenic
ACTCAAAGCAACTCTTGCGT+TGG 0.536955 6.1:-18164073 MS.gene85671:CDS
GACTCGGTGGCGTTGTGACG+CGG 0.543403 6.1:+18162087 None:intergenic
TCTGAGGACACCTTTGGGTG+TGG 0.554653 6.1:+18163792 None:intergenic
CTCCCGGCGCTATCGCGGCG+CGG 0.554875 6.1:-18162129 MS.gene85671:CDS
TATACTCAGGATAGTGAACC+AGG 0.561334 6.1:-18162607 MS.gene85671:intron
AGACTGTTTCCTCCACTACC+AGG 0.568775 6.1:+18164116 None:intergenic
AAAGGAATGTTGAGACGGCT+AGG 0.570161 6.1:-18160446 MS.gene85671:CDS
CTTTCTATGTGATGAAAATG+AGG 0.570487 6.1:-18162799 MS.gene85671:CDS
GGTTGGTCGTCAAAGACTAA+AGG 0.576564 6.1:+18162583 None:intergenic
CTGTTGCTGATATGCATCAA+AGG 0.579948 6.1:-18160464 MS.gene85671:CDS
TGGTAAGGCAATAAAAGCAT+CGG 0.590082 6.1:+18160419 None:intergenic
TTGTTAGACATGTCTATCAA+GGG 0.592908 6.1:-18162827 MS.gene85671:CDS
GTGATCTTGGTGATGATGGT+TGG 0.593758 6.1:+18162566 None:intergenic
TTACATGACTGCTCATCCGA+TGG 0.596568 6.1:-18163611 MS.gene85671:intron
GCGACTACATGAACAATTGG+AGG 0.598747 6.1:-18163078 MS.gene85671:intron
AAATAGCGGCCGCGAAAAGG+TGG 0.601252 6.1:-18162045 MS.gene85671:intron
TGAACGCTTTGTTGATGCTG+TGG 0.601507 6.1:-18164036 MS.gene85671:CDS
AGATTCTGGTAGAAGCGCAA+TGG 0.611720 6.1:-18164141 MS.gene85671:CDS
TCCACAAACGCGTGACTCGG+TGG 0.625853 6.1:+18162074 None:intergenic
GCATCAAAGGAATGTTGAGA+CGG 0.630644 6.1:-18160451 MS.gene85671:CDS
AGCACTAAAGCTTCAAATGG+AGG 0.632582 6.1:-18163108 MS.gene85671:CDS
TTGGACTCTGTTGTCAAACG+CGG 0.644944 6.1:-18162155 MS.gene85671:CDS
TCGTCAAAGACTAAAGGACC+TGG 0.651924 6.1:+18162589 None:intergenic
GAAAATGAGGAAGAAAATGG+TGG 0.654354 6.1:-18162786 MS.gene85671:CDS
GCAATGGATCCTGGTAGTGG+AGG 0.656586 6.1:-18164125 MS.gene85671:CDS
TTTGTGGAAAGCGGAAATAG+CGG 0.661266 6.1:-18162059 MS.gene85671:CDS
GGGGAAAACACTCACGATCG+GGG 0.661843 6.1:+18164000 None:intergenic
AGTTACGCTGAAAACACTAA+CGG 0.669735 6.1:+18162719 None:intergenic
AGTCACGCGTTTGTGGAAAG+CGG 0.682190 6.1:-18162068 MS.gene85671:CDS
CTTGTACACCCATAACTCTG+AGG 0.715783 6.1:+18163776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATATTATTAATAA+AGG + chr6.1:18163478-18163497 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr6.1:18161078-18161059 None:intergenic 0.0%
!! ATTATGGAAAATATTATATT+TGG + chr6.1:18163447-18163466 None:intergenic 10.0%
!!! ATTTATTATTCCTTTAAAAA+AGG + chr6.1:18163186-18163205 None:intergenic 10.0%
!! AAGTTAAAATAAATACTCAA+AGG + chr6.1:18163815-18163834 None:intergenic 15.0%
!! AGTTAAAATAAATACTCAAA+GGG + chr6.1:18163814-18163833 None:intergenic 15.0%
!!! AGTCTATTGTTTTTAAATTA+TGG - chr6.1:18163218-18163237 MS.gene85671:intron 15.0%
!!! TAAAAAGTTATGTTTCTTTT+AGG - chr6.1:18161347-18161366 MS.gene85671:intron 15.0%
!!! TAATATTTTCCATAATTTCT+TGG - chr6.1:18163451-18163470 MS.gene85671:intron 15.0%
!!! TTAATTTGTTTCATTGTTTA+AGG - chr6.1:18163317-18163336 MS.gene85671:intron 15.0%
!! AAAGTTACCAGTAAATTTAA+AGG + chr6.1:18161179-18161198 None:intergenic 20.0%
!! CATTACAAAAATGAGAATAA+TGG + chr6.1:18160937-18160956 None:intergenic 20.0%
!! GAATGTAAAGTAAATACAAA+AGG + chr6.1:18163023-18163042 None:intergenic 20.0%
!! TAAAATTCTGAATACAAAGT+GGG - chr6.1:18162872-18162891 MS.gene85671:intron 20.0%
!! TAAATTTAAAGGAGAAAACA+AGG + chr6.1:18161168-18161187 None:intergenic 20.0%
!!! AACTTTTTAATTGTCTATAG+AGG - chr6.1:18161193-18161212 MS.gene85671:intron 20.0%
!!! AATATTTTATGTCATTTTGC+AGG - chr6.1:18161756-18161775 MS.gene85671:intron 20.0%
!!! ACTTTTTAATTGTCTATAGA+GGG - chr6.1:18161194-18161213 MS.gene85671:intron 20.0%
!!! ATATTTTATGTCATTTTGCA+GGG - chr6.1:18161757-18161776 MS.gene85671:intron 20.0%
! AAAATAAATACTCAAAGGGA+TGG + chr6.1:18163810-18163829 None:intergenic 25.0%
! AAAATTCTGAATACAAAGTG+GGG - chr6.1:18162873-18162892 MS.gene85671:intron 25.0%
! AATAAAGGACCAAGAAATTA+TGG + chr6.1:18163463-18163482 None:intergenic 25.0%
! ACAGTACAATACACAATAAT+AGG + chr6.1:18164120-18164139 None:intergenic 25.0%
! ACATACAGAAAAAATCCATT+CGG + chr6.1:18161705-18161724 None:intergenic 25.0%
! AGAATGCTTAATACTTTAAG+CGG + chr6.1:18161140-18161159 None:intergenic 25.0%
! ATATGTTGACCATTAACTAA+TGG + chr6.1:18160457-18160476 None:intergenic 25.0%
! ATTATTGTGTATTGTACTGT+AGG - chr6.1:18164120-18164139 MS.gene85671:CDS 25.0%
! CATACACAATTATTGAATTG+AGG + chr6.1:18162190-18162209 None:intergenic 25.0%
! CTAAAATTCTGAATACAAAG+TGG - chr6.1:18162871-18162890 MS.gene85671:intron 25.0%
! GTAAAGTTAAATGAACAAAG+AGG + chr6.1:18162997-18163016 None:intergenic 25.0%
! GTACATATTAAAGTAGATTG+AGG - chr6.1:18163869-18163888 MS.gene85671:intron 25.0%
! TGGGTTATCATAATTATACA+AGG - chr6.1:18161296-18161315 MS.gene85671:intron 25.0%
! TTGATGGAAAATGTATTCTT+TGG - chr6.1:18163925-18163944 MS.gene85671:intron 25.0%
!! ATTTTCAGCTAACAGAAAAA+TGG + chr6.1:18160642-18160661 None:intergenic 25.0%
!! CAGATATCTAATACTTTTGT+CGG - chr6.1:18160700-18160719 MS.gene85671:intron 25.0%
!! GTTTTCTCCTTTAAATTTAC+TGG - chr6.1:18161169-18161188 MS.gene85671:intron 25.0%
!! TTGTTTCGAAAAGTTTTTCA+TGG - chr6.1:18161432-18161451 MS.gene85671:intron 25.0%
!! TTTTCAGCTAACAGAAAAAT+GGG + chr6.1:18160641-18160660 None:intergenic 25.0%
!!! ACATTTTTTGTTTCCATTCT+TGG - chr6.1:18163646-18163665 MS.gene85671:intron 25.0%
!!! AGCAATAGTACCTTTTTTAA+AGG - chr6.1:18163173-18163192 MS.gene85671:intron 25.0%
!!! CTAATCTTATTTTCCAAGAA+TGG + chr6.1:18163662-18163681 None:intergenic 25.0%
!!! CTTTTTAATTGTCTATAGAG+GGG - chr6.1:18161195-18161214 MS.gene85671:intron 25.0%
AAAAGACTGACAAGAAAGAA+TGG - chr6.1:18161219-18161238 MS.gene85671:intron 30.0%
AAAAGAGCAGTCAGTATAAA+TGG + chr6.1:18164083-18164102 None:intergenic 30.0%
AAAGAGCAGTCAGTATAAAT+GGG + chr6.1:18164082-18164101 None:intergenic 30.0%
AAATTCTGAATACAAAGTGG+GGG - chr6.1:18162874-18162893 MS.gene85671:intron 30.0%
AAGAATGCAAAACGACAAAT+TGG + chr6.1:18162935-18162954 None:intergenic 30.0%
AATAATGTTACATGTCTGCA+GGG - chr6.1:18161471-18161490 MS.gene85671:intron 30.0%
AATCACAACTGAATGAAAAC+AGG + chr6.1:18162444-18162463 None:intergenic 30.0%
AATGGTCAACATATAGATTC+TGG - chr6.1:18160463-18160482 MS.gene85671:CDS 30.0%
ATTGTTAGACATGTCTATCA+AGG - chr6.1:18161790-18161809 MS.gene85671:intron 30.0%
CAAAACGACAAATTGGAAAT+TGG + chr6.1:18162928-18162947 None:intergenic 30.0%
CTTTCTATGTGATGAAAATG+AGG - chr6.1:18161819-18161838 MS.gene85671:intron 30.0%
GAAAATGTAATGCGTAGAAT+TGG - chr6.1:18160656-18160675 MS.gene85671:intron 30.0%
GATGAAAATGAGGAAGAAAA+TGG - chr6.1:18161829-18161848 MS.gene85671:intron 30.0%
TAATAATGTTACATGTCTGC+AGG - chr6.1:18161470-18161489 MS.gene85671:intron 30.0%
TACATAAGATCATAAGACCT+GGG - chr6.1:18163963-18163982 MS.gene85671:intron 30.0%
TAGTTAACACTAATGCTAAC+AGG + chr6.1:18161325-18161344 None:intergenic 30.0%
TTACATAAGATCATAAGACC+TGG - chr6.1:18163962-18163981 MS.gene85671:intron 30.0%
TTACTCATTGATCTATACTC+AGG - chr6.1:18161998-18162017 MS.gene85671:intron 30.0%
TTGTACTGTAGGTTAAGTTA+AGG - chr6.1:18164131-18164150 MS.gene85671:CDS 30.0%
TTGTTAGACATGTCTATCAA+GGG - chr6.1:18161791-18161810 MS.gene85671:intron 30.0%
TTTCAGCTAACAGAAAAATG+GGG + chr6.1:18160640-18160659 None:intergenic 30.0%
! CATGTAAGTATTTTGCTTGT+CGG + chr6.1:18160994-18161013 None:intergenic 30.0%
! GTTTTCATTCAGTTGTGATT+TGG - chr6.1:18162444-18162463 MS.gene85671:intron 30.0%
! TAATGGATGTCACATTAAGA+GGG + chr6.1:18160920-18160939 None:intergenic 30.0%
! TGAGTTGAGATTAAAGTTGT+TGG + chr6.1:18160530-18160549 None:intergenic 30.0%
!! AGTGATAGCTTATTTGCTAT+TGG - chr6.1:18162227-18162246 MS.gene85671:intron 30.0%
!! ATAATGGATGTCACATTAAG+AGG + chr6.1:18160921-18160940 None:intergenic 30.0%
!! TAGATCTCATTTTTAACCGT+TGG + chr6.1:18162854-18162873 None:intergenic 30.0%
!!! CTATAGATTTTTTCCACCAA+CGG + chr6.1:18161390-18161409 None:intergenic 30.0%
!!! TATAGATTTTTTCCACCAAC+GGG + chr6.1:18161389-18161408 None:intergenic 30.0%
AAATCAGATTGACGTACCAT+CGG + chr6.1:18161026-18161045 None:intergenic 35.0%
AATTAGGATAGGTCCATTGA+TGG - chr6.1:18162262-18162281 MS.gene85671:intron 35.0%
AATTTCATGGAGCAATGGTA+AGG + chr6.1:18164014-18164033 None:intergenic 35.0%
ACAGTTGAACTTCAGTAGAA+AGG + chr6.1:18162407-18162426 None:intergenic 35.0%
ACGACAAATTGGAAATTGGT+TGG + chr6.1:18162924-18162943 None:intergenic 35.0%
AGATTGAGGAAACTGCAATT+AGG - chr6.1:18163883-18163902 MS.gene85671:intron 35.0%
AGTTACGCTGAAAACACTAA+CGG + chr6.1:18161902-18161921 None:intergenic 35.0%
ATAATGTTACATGTCTGCAG+GGG - chr6.1:18161472-18161491 MS.gene85671:intron 35.0%
ATACTCAAAGGGATGGAAAA+AGG + chr6.1:18163803-18163822 None:intergenic 35.0%
ATGATAACCCAAGAGCAAAA+AGG + chr6.1:18161287-18161306 None:intergenic 35.0%
ATGGCTCTTAACATGGTAAA+TGG + chr6.1:18160874-18160893 None:intergenic 35.0%
ATTAGGATAGGTCCATTGAT+GGG - chr6.1:18162263-18162282 MS.gene85671:intron 35.0%
CAAAGTTAAAAGACGTGTCT+AGG + chr6.1:18162141-18162160 None:intergenic 35.0%
CAAATCCATAGTTGTCAAAG+CGG + chr6.1:18163593-18163612 None:intergenic 35.0%
GAAAATGAGGAAGAAAATGG+TGG - chr6.1:18161832-18161851 MS.gene85671:intron 35.0%
GAGGGAGTCTAAATATTGTA+AGG - chr6.1:18163985-18164004 MS.gene85671:intron 35.0%
GATATGCTTTCCATTCTAGA+TGG - chr6.1:18161241-18161260 MS.gene85671:intron 35.0%
GGAAGCAATCCATTAGTTAA+TGG - chr6.1:18160445-18160464 MS.gene85671:CDS 35.0%
GGAGAAAATATGCAACAAAC+TGG + chr6.1:18162377-18162396 None:intergenic 35.0%
GTTCTCAGTGTTTGTAACAA+AGG + chr6.1:18161956-18161975 None:intergenic 35.0%
TAGATCAGATCAGTTCAACA+AGG + chr6.1:18161573-18161592 None:intergenic 35.0%
TCAGTGTTTGTAACAAAGGA+GGG + chr6.1:18161952-18161971 None:intergenic 35.0%
TGATAACCCAAGAGCAAAAA+GGG + chr6.1:18161286-18161305 None:intergenic 35.0%
TTTCGATGCTTATTTCCGAA+TGG - chr6.1:18161687-18161706 MS.gene85671:intron 35.0%
! TGAAGCACTAAAGCTTCAAA+TGG - chr6.1:18161507-18161526 MS.gene85671:intron 35.0%
! TGGTAAGGCAATAAAAGCAT+CGG + chr6.1:18164202-18164221 None:intergenic 35.0%
!! AAATTGGTTGGTAGTACTAG+TGG + chr6.1:18162912-18162931 None:intergenic 35.0%
!! AATTGGTTGGTAGTACTAGT+GGG + chr6.1:18162911-18162930 None:intergenic 35.0%
!! GTTGCTGATTCTAGTTTAGT+TGG - chr6.1:18160424-18160443 MS.gene85671:CDS 35.0%
!!! CTAGACACGTCTTTTAACTT+TGG - chr6.1:18162139-18162158 MS.gene85671:CDS 35.0%
AAAACTAACCCTACAAGCAG+CGG + chr6.1:18162292-18162311 None:intergenic 40.0%
AAAAGACGTGTCTAGGAGTA+GGG + chr6.1:18162134-18162153 None:intergenic 40.0%
AAGTGCACATTACCTGCAAA+TGG + chr6.1:18160893-18160912 None:intergenic 40.0%
ACAAGTCTGCCTCAATTTCA+TGG + chr6.1:18164027-18164046 None:intergenic 40.0%
ACACTGAATCATGGAGAAAG+CGG + chr6.1:18162630-18162649 None:intergenic 40.0%
ACCATTGCTCCATGAAATTG+AGG - chr6.1:18164015-18164034 MS.gene85671:CDS 40.0%
ACGTGCAAAACACTGAATCA+TGG + chr6.1:18162639-18162658 None:intergenic 40.0%
ACTATCCTTTCCTTTCCCTT+AGG - chr6.1:18160801-18160820 MS.gene85671:intron 40.0%
AGCACTAAAGCTTCAAATGG+AGG - chr6.1:18161510-18161529 MS.gene85671:intron 40.0%
ATAAGATCATAAGACCTGGG+AGG - chr6.1:18163966-18163985 MS.gene85671:intron 40.0%
ATTGTGTATGCAGTTAACCG+TGG - chr6.1:18162200-18162219 MS.gene85671:intron 40.0%
CAACCACCAAAACACCAAAA+CGG + chr6.1:18162721-18162740 None:intergenic 40.0%
CACTCTCAACAAAAAAGCCA+TGG - chr6.1:18162075-18162094 MS.gene85671:CDS 40.0%
CAGACCTTGAGAATTAGGAT+AGG - chr6.1:18162251-18162270 MS.gene85671:intron 40.0%
CCTTTCAGTCTGATATGTCA+CGG - chr6.1:18163838-18163857 MS.gene85671:intron 40.0%
CGCTTTGACAACTATGGATT+TGG - chr6.1:18163591-18163610 MS.gene85671:intron 40.0%
CTAGAATCAGCAACATGTGT+TGG + chr6.1:18160418-18160437 None:intergenic 40.0%
CTATCCTAATTCTCAAGGTC+TGG + chr6.1:18162253-18162272 None:intergenic 40.0%
CTCAGTGTTTGTAACAAAGG+AGG + chr6.1:18161953-18161972 None:intergenic 40.0%
CTGTTGCTGATATGCATCAA+AGG - chr6.1:18164154-18164173 MS.gene85671:CDS 40.0%
CTTCAGTAGAAAGGCAAAAG+CGG + chr6.1:18162398-18162417 None:intergenic 40.0%
GAAGCGACTACATGAACAAT+TGG - chr6.1:18161537-18161556 MS.gene85671:intron 40.0%
GAGGAAACTGCAATTAGGTT+TGG - chr6.1:18163888-18163907 MS.gene85671:intron 40.0%
GAGGAAGAGGAAAGAGAATA+TGG - chr6.1:18162815-18162834 MS.gene85671:CDS 40.0%
GCATCAAAGGAATGTTGAGA+CGG - chr6.1:18164167-18164186 MS.gene85671:CDS 40.0%
GGACTTGTAACTAGACTTGA+TGG - chr6.1:18163909-18163928 MS.gene85671:intron 40.0%
TAAAAGACGTGTCTAGGAGT+AGG + chr6.1:18162135-18162154 None:intergenic 40.0%
TAAGATCATAAGACCTGGGA+GGG - chr6.1:18163967-18163986 MS.gene85671:intron 40.0%
TAATGTTACATGTCTGCAGG+GGG - chr6.1:18161473-18161492 MS.gene85671:intron 40.0%
TATACTCAGGATAGTGAACC+AGG - chr6.1:18162011-18162030 MS.gene85671:intron 40.0%
TCACGATGAACCATCTAGAA+TGG + chr6.1:18161254-18161273 None:intergenic 40.0%
TGGACCTATCCTAATTCTCA+AGG + chr6.1:18162258-18162277 None:intergenic 40.0%
TGGCATGAAGATTGATCCAA+CGG - chr6.1:18162835-18162854 MS.gene85671:CDS 40.0%
TTGAGGCAGACTTGTATTAC+TGG - chr6.1:18164032-18164051 MS.gene85671:CDS 40.0%
TTGCAGGTAATGTGCACTTT+AGG - chr6.1:18160894-18160913 MS.gene85671:intron 40.0%
TTGTGTATGCAGTTAACCGT+GGG - chr6.1:18162201-18162220 MS.gene85671:intron 40.0%
TTTGTGGAAAGCGGAAATAG+CGG - chr6.1:18162559-18162578 MS.gene85671:CDS 40.0%
TTTGTTGAGAGTGGTGATCT+TGG + chr6.1:18162068-18162087 None:intergenic 40.0%
! ATAACTCTGAGGACACCTTT+GGG + chr6.1:18160834-18160853 None:intergenic 40.0%
! ATAGCTTCCCTTTTTGCTCT+TGG - chr6.1:18161276-18161295 MS.gene85671:intron 40.0%
! CAGTGTTTTGCACGTTTTTC+CGG - chr6.1:18162644-18162663 MS.gene85671:intron 40.0%
! GATGCTTTTATTGCCTTACC+AGG - chr6.1:18164201-18164220 MS.gene85671:CDS 40.0%
! GTTAGTGTTTTCAGCGTAAC+TGG - chr6.1:18161901-18161920 MS.gene85671:intron 40.0%
! TAGCTTCCCTTTTTGCTCTT+GGG - chr6.1:18161277-18161296 MS.gene85671:intron 40.0%
! TCCTTTTCTTTTGCTTGCCA+TGG + chr6.1:18162095-18162114 None:intergenic 40.0%
! TGCTTGTCGGTATTTCTGTA+TGG + chr6.1:18160981-18161000 None:intergenic 40.0%
! TGTTTTCAGCGTAACTGGAA+AGG - chr6.1:18161906-18161925 MS.gene85671:intron 40.0%
!! AAAGGTGTCCTCAGAGTTAT+GGG - chr6.1:18160834-18160853 MS.gene85671:intron 40.0%
!! GTCATTTTGCAGGGTAAACA+AGG - chr6.1:18161766-18161785 MS.gene85671:intron 40.0%
!!! CATGGCTTTTTTGTTGAGAG+TGG + chr6.1:18162077-18162096 None:intergenic 40.0%
AAAGGAATGTTGAGACGGCT+AGG - chr6.1:18164172-18164191 MS.gene85671:CDS 45.0%
ACTCAAAGCAACTCTTGCGT+TGG - chr6.1:18160545-18160564 MS.gene85671:intron 45.0%
ATAAGCTATCACTGTCCCCA+CGG + chr6.1:18162220-18162239 None:intergenic 45.0%
ATGGGGAAAACACTCACGAT+CGG + chr6.1:18160623-18160642 None:intergenic 45.0%
ATTCAATGCCTCAAACCCGT+TGG - chr6.1:18161371-18161390 MS.gene85671:intron 45.0%
CAATATTTAGACTCCCTCCC+AGG + chr6.1:18163983-18164002 None:intergenic 45.0%
CACTGAATCATGGAGAAAGC+GGG + chr6.1:18162629-18162648 None:intergenic 45.0%
CCATGTTAAGAGCCATTTGC+AGG - chr6.1:18160878-18160897 MS.gene85671:intron 45.0%
CCGTGACATATCAGACTGAA+AGG + chr6.1:18163841-18163860 None:intergenic 45.0%
CCTGCAAATGGCTCTTAACA+TGG + chr6.1:18160881-18160900 None:intergenic 45.0%
CGGAAACAACCACCAAAACA+CGG + chr6.1:18162698-18162717 None:intergenic 45.0%
CGTTTCCGCTTTGACAACTA+TGG - chr6.1:18163585-18163604 MS.gene85671:intron 45.0%
CTCAGAGTTATGGGTGTACA+AGG - chr6.1:18160843-18160862 MS.gene85671:intron 45.0%
CTTGTACACCCATAACTCTG+AGG + chr6.1:18160845-18160864 None:intergenic 45.0%
GCCATGGCAAGCAAAAGAAA+AGG - chr6.1:18162091-18162110 MS.gene85671:CDS 45.0%
GCCTCAATTTCATGGAGCAA+TGG + chr6.1:18164019-18164038 None:intergenic 45.0%
GCGACTACATGAACAATTGG+AGG - chr6.1:18161540-18161559 MS.gene85671:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG + chr6.1:18163585-18163604 None:intergenic 45.0%
TCGTCAAAGACTAAAGGACC+TGG + chr6.1:18162032-18162051 None:intergenic 45.0%
TGTGTATGCAGTTAACCGTG+GGG - chr6.1:18162202-18162221 MS.gene85671:intron 45.0%
TTACATGACTGCTCATCCGA+TGG - chr6.1:18161007-18161026 MS.gene85671:intron 45.0%
TTATACCTGCATCCTGCAGT+TGG - chr6.1:18163722-18163741 MS.gene85671:intron 45.0%
TTGGACTCTGTTGTCAAACG+CGG - chr6.1:18162463-18162482 MS.gene85671:intron 45.0%
TTGGCCAGACCTTGAGAATT+AGG - chr6.1:18162246-18162265 MS.gene85671:intron 45.0%
! AGATTCTGGTAGAAGCGCAA+TGG - chr6.1:18160477-18160496 MS.gene85671:CDS 45.0%
! CATAACTCTGAGGACACCTT+TGG + chr6.1:18160835-18160854 None:intergenic 45.0%
! GACACAAAACGACCGTGTTT+TGG - chr6.1:18162683-18162702 MS.gene85671:intron 45.0%
! GGTTGGTCGTCAAAGACTAA+AGG + chr6.1:18162038-18162057 None:intergenic 45.0%
! TGAACGCTTTGTTGATGCTG+TGG - chr6.1:18160582-18160601 MS.gene85671:intron 45.0%
!! ACAAAACGACCGTGTTTTGG+TGG - chr6.1:18162686-18162705 MS.gene85671:intron 45.0%
!! AGTGGTGATCTTGGTGATGA+TGG + chr6.1:18162059-18162078 None:intergenic 45.0%
!! CAAAGGTGTCCTCAGAGTTA+TGG - chr6.1:18160833-18160852 MS.gene85671:intron 45.0%
!! GTGATCTTGGTGATGATGGT+TGG + chr6.1:18162055-18162074 None:intergenic 45.0%
!! TGGTAGTACTAGTGGGTTAC+AGG + chr6.1:18162904-18162923 None:intergenic 45.0%
!! TTTTTCCACCAACGGGTTTG+AGG + chr6.1:18161382-18161401 None:intergenic 45.0%
!!! TTTCCGCCGTTTTGGTGTTT+TGG - chr6.1:18162712-18162731 MS.gene85671:intron 45.0%
!!! AAAATATTTTAAAAATATCA+AGG + chr6.1:18161744-18161763 None:intergenic 5.0%
!!! AAATTAAATTTTTTTAGATA+AGG + chr6.1:18160772-18160791 None:intergenic 5.0%
!!! ATAATATAATTTTTAGTTTT+AGG - chr6.1:18163484-18163503 MS.gene85671:intron 5.0%
!!! TAATATAATTTTTAGTTTTA+GGG - chr6.1:18163485-18163504 MS.gene85671:intron 5.0%
AAGCAGCGGTATCCCATCAA+TGG + chr6.1:18162278-18162297 None:intergenic 50.0%
AGACTGTTTCCTCCACTACC+AGG + chr6.1:18160505-18160524 None:intergenic 50.0%
AGAGGGAAAAGGTGAGGAAG+AGG - chr6.1:18162802-18162821 MS.gene85671:CDS 50.0%
AGAGTTGTGTTGCGAGTTGC+AGG - chr6.1:18162777-18162796 MS.gene85671:CDS 50.0%
AGTCACGCGTTTGTGGAAAG+CGG - chr6.1:18162550-18162569 MS.gene85671:CDS 50.0%
AGTTGCAGGAGAGAGGGAAA+AGG - chr6.1:18162791-18162810 MS.gene85671:CDS 50.0%
ATGGGATACCGCTGCTTGTA+GGG - chr6.1:18162281-18162300 MS.gene85671:intron 50.0%
CATCATGACCTACCAACTGC+AGG + chr6.1:18163737-18163756 None:intergenic 50.0%
CCACCAAAACACCAAAACGG+CGG + chr6.1:18162718-18162737 None:intergenic 50.0%
CTTTCCACAAACGCGTGACT+CGG + chr6.1:18162550-18162569 None:intergenic 50.0%
GTTGATGCTGTGGCTCAACT+TGG - chr6.1:18160592-18160611 MS.gene85671:intron 50.0%
TGGCACCTAAGGGAAAGGAA+AGG + chr6.1:18160809-18160828 None:intergenic 50.0%
TGGGGAAAACACTCACGATC+GGG + chr6.1:18160622-18160641 None:intergenic 50.0%
!!! GTGACGCGGATCCTTGTTTT+TGG + chr6.1:18162520-18162539 None:intergenic 50.0%
AAATAGCGGCCGCGAAAAGG+TGG - chr6.1:18162573-18162592 MS.gene85671:CDS 55.0%
ACCTACCAACTGCAGGATGC+AGG + chr6.1:18163730-18163749 None:intergenic 55.0%
ACCTGCATCCTGCAGTTGGT+AGG - chr6.1:18163726-18163745 MS.gene85671:intron 55.0%
ACCTTTGGGTGTGGCACCTA+AGG + chr6.1:18160820-18160839 None:intergenic 55.0%
AGCGCAATGGATCCTGGTAG+TGG - chr6.1:18160490-18160509 MS.gene85671:intron 55.0%
CAATGCCTCAAACCCGTTGG+TGG - chr6.1:18161374-18161393 MS.gene85671:intron 55.0%
CAGGAGAGAGGGAAAAGGTG+AGG - chr6.1:18162796-18162815 MS.gene85671:CDS 55.0%
CCTTTGGGTGTGGCACCTAA+GGG + chr6.1:18160819-18160838 None:intergenic 55.0%
GATGCTGTGGCTCAACTTGG+TGG - chr6.1:18160595-18160614 MS.gene85671:intron 55.0%
GATGGGATACCGCTGCTTGT+AGG - chr6.1:18162280-18162299 MS.gene85671:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG + chr6.1:18163554-18163573 None:intergenic 55.0%
GGGGAAAACACTCACGATCG+GGG + chr6.1:18160621-18160640 None:intergenic 55.0%
GTTGCGAGTTGCAGGAGAGA+GGG - chr6.1:18162785-18162804 MS.gene85671:CDS 55.0%
TCTGAGGACACCTTTGGGTG+TGG + chr6.1:18160829-18160848 None:intergenic 55.0%
TGTTGCGAGTTGCAGGAGAG+AGG - chr6.1:18162784-18162803 MS.gene85671:CDS 55.0%
! ACGTTTTTCCGGCGAGTTGC+AGG - chr6.1:18162655-18162674 MS.gene85671:intron 55.0%
! AGCGCGCCGCGTCAATTTTT+GGG - chr6.1:18163545-18163564 MS.gene85671:intron 55.0%
! GGTAGAAGCGCAATGGATCC+TGG - chr6.1:18160484-18160503 MS.gene85671:intron 55.0%
! TAGCGCGCCGCGTCAATTTT+TGG - chr6.1:18163544-18163563 MS.gene85671:intron 55.0%
!! GCAATGGATCCTGGTAGTGG+AGG - chr6.1:18160493-18160512 MS.gene85671:intron 55.0%
!! GGTGGTTGTTTCCGCCGTTT+TGG - chr6.1:18162704-18162723 MS.gene85671:intron 55.0%
!!! CCGCCGTTTTGGTGTTTTGG+TGG - chr6.1:18162715-18162734 MS.gene85671:CDS 55.0%
AATTGACGCGGCGCGCTATG+CGG + chr6.1:18163542-18163561 None:intergenic 60.0%
AGCTGCAGGAGAGAGGGAGA+AGG - chr6.1:18162748-18162767 MS.gene85671:CDS 60.0%
CAGGAGAGAGGGAGAAGGTG+AGG - chr6.1:18162753-18162772 MS.gene85671:CDS 60.0%
CGGAAATAGCGGCCGCGAAA+AGG - chr6.1:18162570-18162589 MS.gene85671:CDS 60.0%
GCGGGGGCTATTACATGACG+CGG + chr6.1:18163512-18163531 None:intergenic 60.0%
GGGTGTGGCACCTAAGGGAA+AGG + chr6.1:18160814-18160833 None:intergenic 60.0%
GTGGTTGTGTTGCGAGCTGC+AGG - chr6.1:18162734-18162753 MS.gene85671:CDS 60.0%
GTTGCGAGCTGCAGGAGAGA+GGG - chr6.1:18162742-18162761 MS.gene85671:CDS 60.0%
TGTTGCGAGCTGCAGGAGAG+AGG - chr6.1:18162741-18162760 MS.gene85671:CDS 60.0%
TTCCGGCGAGTTGCAGGACA+GGG - chr6.1:18162661-18162680 MS.gene85671:intron 60.0%
TTTCCGGCGAGTTGCAGGAC+AGG - chr6.1:18162660-18162679 MS.gene85671:intron 60.0%
! CCCTTAGGTGCCACACCCAA+AGG - chr6.1:18160816-18160835 MS.gene85671:intron 60.0%
! CGGGCGATTTGACCCGCTTT+TGG + chr6.1:18162610-18162629 None:intergenic 60.0%
! GCGCGCCGCGTCAATTTTTG+GGG - chr6.1:18163546-18163565 MS.gene85671:intron 60.0%
! TCCACAAACGCGTGACTCGG+TGG + chr6.1:18162547-18162566 None:intergenic 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - chr6.1:18163549-18163568 MS.gene85671:intron 60.0%
ATTGACGCGGCGCGCTATGC+GGG + chr6.1:18163541-18163560 None:intergenic 65.0%
GCCACCGAGTCACGCGTTTG+TGG - chr6.1:18162543-18162562 MS.gene85671:CDS 65.0%
GCGCGGAGCGGCCAAAAACA+AGG - chr6.1:18162506-18162525 MS.gene85671:intron 65.0%
GTCCCTGTCCTGCAACTCGC+CGG + chr6.1:18162666-18162685 None:intergenic 65.0%
TTGTCAAACGCGGCCGCTCC+CGG - chr6.1:18162473-18162492 MS.gene85671:intron 65.0%
!! GACTCGGTGGCGTTGTGACG+CGG + chr6.1:18162534-18162553 None:intergenic 65.0%
CGCGAAAAGGTGGTGCGGGG+CGG - chr6.1:18162583-18162602 MS.gene85671:CDS 70.0%
CGGCCGCGAAAAGGTGGTGC+GGG - chr6.1:18162579-18162598 MS.gene85671:CDS 70.0%
GCGGCCGCGAAAAGGTGGTG+CGG - chr6.1:18162578-18162597 MS.gene85671:CDS 70.0%
GGCCGCGAAAAGGTGGTGCG+GGG - chr6.1:18162580-18162599 MS.gene85671:CDS 70.0%
GGTGCGGGGCGGACCAAAAG+CGG - chr6.1:18162594-18162613 MS.gene85671:CDS 70.0%
GTGCGGGGCGGACCAAAAGC+GGG - chr6.1:18162595-18162614 MS.gene85671:CDS 70.0%
! CGCCCCGCACCACCTTTTCG+CGG + chr6.1:18162585-18162604 None:intergenic 70.0%
AGCGGAAACGCGGCGCGACG+CGG + chr6.1:18163575-18163594 None:intergenic 75.0%
! CGCGCTATGCGGGCGCGACG+CGG + chr6.1:18163531-18163550 None:intergenic 80.0%
! CGCTATGCGGGCGCGACGCG+GGG + chr6.1:18163529-18163548 None:intergenic 80.0%
! CTCCCGGCGCTATCGCGGCG+CGG - chr6.1:18162489-18162508 MS.gene85671:intron 80.0%
! CTCCGCGCCGCGATAGCGCC+GGG + chr6.1:18162494-18162513 None:intergenic 80.0%
! GCGCTATGCGGGCGCGACGC+GGG + chr6.1:18163530-18163549 None:intergenic 80.0%
! GCTATGCGGGCGCGACGCGG+GGG + chr6.1:18163528-18163547 None:intergenic 80.0%
! GCTCCGCGCCGCGATAGCGC+CGG + chr6.1:18162495-18162514 None:intergenic 80.0%
! GGCCGCTCCCGGCGCTATCG+CGG - chr6.1:18162484-18162503 MS.gene85671:intron 80.0%
! GGCGCTATCGCGGCGCGGAG+CGG - chr6.1:18162494-18162513 MS.gene85671:intron 80.0%
!! CGCCGCGATAGCGCCGGGAG+CGG + chr6.1:18162489-18162508 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 18160406 18164234 18160406 ID=MS.gene85671
chr6.1 mRNA 18160406 18164234 18160406 ID=MS.gene85671.t1;Parent=MS.gene85671
chr6.1 exon 18164015 18164234 18164015 ID=MS.gene85671.t1.exon1;Parent=MS.gene85671.t1
chr6.1 CDS 18164015 18164234 18164015 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18163741 18163817 18163741 ID=MS.gene85671.t1.exon2;Parent=MS.gene85671.t1
chr6.1 CDS 18163741 18163817 18163741 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18163612 18163654 18163612 ID=MS.gene85671.t1.exon3;Parent=MS.gene85671.t1
chr6.1 CDS 18163612 18163654 18163612 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18163371 18163407 18163371 ID=MS.gene85671.t1.exon4;Parent=MS.gene85671.t1
chr6.1 CDS 18163371 18163407 18163371 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18163079 18163148 18163079 ID=MS.gene85671.t1.exon5;Parent=MS.gene85671.t1
chr6.1 CDS 18163079 18163148 18163079 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18162713 18162862 18162713 ID=MS.gene85671.t1.exon6;Parent=MS.gene85671.t1
chr6.1 CDS 18162713 18162862 18162713 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18162523 18162620 18162523 ID=MS.gene85671.t1.exon7;Parent=MS.gene85671.t1
chr6.1 CDS 18162523 18162620 18162523 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18162046 18162184 18162046 ID=MS.gene85671.t1.exon8;Parent=MS.gene85671.t1
chr6.1 CDS 18162046 18162184 18162046 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
chr6.1 exon 18160406 18160498 18160406 ID=MS.gene85671.t1.exon9;Parent=MS.gene85671.t1
chr6.1 CDS 18160406 18160498 18160406 ID=cds.MS.gene85671.t1;Parent=MS.gene85671.t1
Gene Sequence

>MS.gene85671

ATGTATCATCCAACACATGTTGCTGATTCTAGTTTAGTTGGAAGCAATCCATTAGTTAATGGTCAACATATAGATTCTGGTAGAAGCGCAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTTTAATCTCAACTCAAAGCAACTCTTGCGTTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGCCCCGATCGTGAGTGTTTTCCCCATTTTTCTGTTAGCTGAAAATGTAATGCGTAGAATTGGTTATATCACACATATGTGCATCAGATATCTAATACTTTTGTCGGCTAGATATTCTAATGCTAGATGATGAGTTTATCAAGCTTTAACATTCCTTATCTAAAAAAATTTAATTTAAATCTCTAACTATCCTTTCCTTTCCCTTAGGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGGTAATGTGCACTTTAGGCCCTCTTAATGTGACATCCATTATTCTCATTTTTGTAATGTGTTCTTTCTACTTTTTTGTTCCATACAGAAATACCGACAAGCAAAATACTTACATGACTGCTCATCCGATGGTACGTCAATCTGATTTTCATCGTTCGCCATATATATATATATATATATATATATATATATATATATATATATATATGTATATATCTTACTGATTTTTTGTTCTTAGTCCGCTTAAAGTATTAAGCATTCTTTACACCTTGTTTTCTCCTTTAAATTTACTGGTAACTTTTTAATTGTCTATAGAGGGGAAAAAGACTGACAAGAAAGAATGGATATGCTTTCCATTCTAGATGGTTCATCGTGAATATAGCTTCCCTTTTTGCTCTTGGGTTATCATAATTATACAAGGAAGCCTGTTAGCATTAGTGTTAACTATATAAAAAGTTATGTTTCTTTTAGGCATTCAATGCCTCAAACCCGTTGGTGGAAAAAATCTATAGCTTTTGCATTAAAGAATCATGATTGTTTCGAAAAGTTTTTCATGGTATAAGTAATTAATGTAATAATGTTACATGTCTGCAGGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGTATATTTCCTTGTTGAACTGATCTGATCTATCAACTATATTATATTAGCAGATTGTATATTTTTTAATGCTTTCTACTGCATCTGATCATGTGAGATGAAATGATGATATCAGTTTCTCGTAATTTTCGATGCTTATTTCCGAATGGATTTTTTCTGTATGTTTGAATCTCTTCTCAACCTTGATATTTTTAAAATATTTTATGTCATTTTGCAGGGTAAACAAGGCATTGTTAGACATGTCTATCAAGGGATTGTCTTTCTATGTGATGAAAATGAGGAAGAAAATGGTGGCTACGTCATAGCTAAAGCTATTATGTGTGAGAAAGTCAAGCTTGCCGTTAGTGTTTTCAGCGTAACTGGAAAGGTCTAACATCTTTATCTAGTACCCTCCTTTGTTACAAACACTGAGAACTTGTGCTTATTTTTTATATTTTTTACTCATTGATCTATACTCAGGATAGTGAACCAGGTCCTTTAGTCTTTGACGACCAACCATCATCACCAAGATCACCACTCTCAACAAAAAAGCCATGGCAAGCAAAAGAAAAGGATTTGTATGTAATGATGCCCTACTCCTAGACACGTCTTTTAACTTTGGATACAGTACACATGTTACTAATTTTCCTCAATTCAATAATTGTGTATGCAGTTAACCGTGGGGACAGTGATAGCTTATTTGCTATTGGCCAGACCTTGAGAATTAGGATAGGTCCATTGATGGGATACCGCTGCTTGTAGGGTTAGTTTTAGTCTAATTCAATTTTTTTTTGAAATAATTTTAGTCTAATTCAATTAATAATAACTTTTATACCAGTTTGTTGCATATTTTCTCCGCTTTTGCCTTTCTACTGAAGTTCAACTGTTAGCTTTGATTATGCCTGTTTTCATTCAGTTGTGATTTGGACTCTGTTGTCAAACGCGGCCGCTCCCGGCGCTATCGCGGCGCGGAGCGGCCAAAAACAAGGATCCGCGTCACAACGCCACCGAGTCACGCGTTTGTGGAAAGCGGAAATAGCGGCCGCGAAAAGGTGGTGCGGGGCGGACCAAAAGCGGGTCAAATCGCCCGCTTTCTCCATGATTCAGTGTTTTGCACGTTTTTCCGGCGAGTTGCAGGACAGGGACACAAAACGACCGTGTTTTGGTGGTTGTTTCCGCCGTTTTGGTGTTTTGGTGGTTGTGTTGCGAGCTGCAGGAGAGAGGGAGAAGGTGAGGAAGAGTTGTGTTGCGAGTTGCAGGAGAGAGGGAAAAGGTGAGGAAGAGGAAAGAGAATATGGCATGAAGATTGATCCAACGGTTAAAAATGAGATCTAAAATTCTGAATACAAAGTGGGGGACAGCCTGTAACCCACTAGTACTACCAACCAATTTCCAATTTGTCGTTTTGCATTCTTTCTTATATCACTAAGATTTTTATTTTTTTTTAATTGATTCCTCTTTGTTCATTTAACTTTACATTCCTTTTGTATTTACTTTACATTCTTTTTTATTTTCAATAATTATTAACAATTAATTGCTAATGTGATTTAAAAAGTCACACTCATATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTTGTTTTACTAAATTAATAGCAATAGTACCTTTTTTAAAGGAATAATAAATAATACATAGTATAGTCTATTGTTTTTAAATTATGGCATGATATATTATTTTTGTCTTTATCAAAAAAAATATAGTATGATATATAGTTTTTAAATTAATAAGTGTATACAATTAATTTGTTTCATTGTTTAAGGTATTTTAATATACAATATGATATTTTAACATTAAAAGTATTTAAGTATAATAGTATTTAATACTAAAGCAATTAATAATCTTTAATTTTTCATTTATACTAATACCAAATATAATATTTTCCATAATTTCTTGGTCCTTTATTAATAATATAATTTTTAGTTTTAGGGTCCGCGTCATGTAATAGCCCCCGCGTCGCGCCCGCATAGCGCGCCGCGTCAATTTTTGGGGTGGCCGCGTCGCGCCGCGTTTCCGCTTTGACAACTATGGATTTGGACAAATAGATGCAAAAGAACTACAGTGTATTCACATTTTTTGTTTCCATTCTTGGAAAATAAGATTAGACACTATTACAACTTTTTTATTTTAGCAACGATAAAAAAATTATACCTGCATCCTGCAGTTGGTAGGTCATGATGTTTTGTGTCAAAATCTACATTTACTCGAGTTTTGTAACTTGTACCTTTTTCCATCCCTTTGAGTATTTATTTTAACTTTGACCTTTCAGTCTGATATGTCACGGAAACTATTGTACATATTAAAGTAGATTGAGGAAACTGCAATTAGGTTTGGACTTGTAACTAGACTTGATGGAAAATGTATTCTTTGGTTTTCACTTTAAAATTACATAAGATCATAAGACCTGGGAGGGAGTCTAAATATTGTAAGGTAGCCTTACCATTGCTCCATGAAATTGAGGCAGACTTGTATTACTGGTTTTGTCTCAGAGTGATGTGAATTCCCATTTATACTGACTGCTCTTTTTACTTCATTCTTGTCCTATTATTGTGTATTGTACTGTAGGTTAAGTTAAGGCTGTTGCTGATATGCATCAAAGGAATGTTGAGACGGCTAGGCATTCCGATGCTTTTATTGCCTTACCAGGTTATAGCGTGA
Protein sequence

>MS.gene85671.t1

MYHPTHVADSSLVGSNPLVNGQHIDSGRSAMDPGSGGNSLANNFNLNSKQLLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRQAKYLHDCSSDERMDMLSILDGSSGMQITEALKLQMEVQKRLHEQLEGKQGIVRHVYQGIVFLCDENEEENGGYVIAKAIMCEKVKLAVSVFSVTGKDSEPGPLVFDDQPSSPRSPLSTKKPWQAKEKDFCDLDSVVKRGRSRRYRGAERPKTRIRVTTPPSHAFVESGNSGREKVVKLRLLLICIKGMLRRLGIPMLLLPYQVIA