Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85685.t1 | XP_024634655.1 | 75.8 | 207 | 35 | 1 | 8 | 214 | 1 | 192 | 1.50E-69 | 272.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85685.t1 | Q5JMK6 | 42.9 | 98 | 56 | 0 | 108 | 205 | 137 | 234 | 4.5e-11 | 69.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85685.t1 | A0A2K3MUT1 | 55.4 | 193 | 83 | 3 | 14 | 205 | 1 | 191 | 1.3e-40 | 176.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene85685.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85685.t1 | MTR_3g465280 | 66.667 | 75 | 21 | 3 | 22 | 95 | 9 | 80 | 7.05e-25 | 99.4 |
MS.gene85685.t1 | MTR_3g465280 | 41.176 | 119 | 60 | 5 | 1 | 117 | 83 | 193 | 1.51e-16 | 76.6 |
MS.gene85685.t1 | MTR_4g079500 | 43.158 | 95 | 54 | 0 | 108 | 202 | 194 | 288 | 7.98e-18 | 80.9 |
MS.gene85685.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 7.41e-17 | 78.2 |
MS.gene85685.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 9.51e-17 | 77.8 |
MS.gene85685.t1 | MTR_5g075390 | 33.071 | 127 | 77 | 1 | 82 | 200 | 125 | 251 | 1.34e-11 | 63.2 |
MS.gene85685.t1 | MTR_3g467120 | 38.298 | 94 | 58 | 0 | 107 | 200 | 176 | 269 | 3.31e-11 | 62.0 |
MS.gene85685.t1 | MTR_2g099050 | 36.458 | 96 | 61 | 0 | 107 | 202 | 220 | 315 | 6.22e-11 | 61.6 |
MS.gene85685.t1 | MTR_4g072090 | 35.922 | 103 | 66 | 0 | 108 | 210 | 360 | 462 | 7.13e-11 | 61.2 |
MS.gene85685.t1 | MTR_6g034945 | 36.792 | 106 | 67 | 0 | 107 | 212 | 150 | 255 | 7.56e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85685.t1 | AT2G42380 | 39.823 | 113 | 68 | 0 | 90 | 202 | 168 | 280 | 6.55e-19 | 83.6 |
MS.gene85685.t1 | AT3G58120 | 39.823 | 113 | 67 | 1 | 90 | 202 | 185 | 296 | 3.87e-18 | 81.6 |
MS.gene85685.t1 | AT2G42380 | 41.237 | 97 | 57 | 0 | 90 | 186 | 168 | 264 | 1.98e-16 | 76.3 |
MS.gene85685.t1 | AT3G58120 | 41.237 | 97 | 56 | 1 | 90 | 186 | 185 | 280 | 1.20e-15 | 74.3 |
MS.gene85685.t1 | AT2G42380 | 34.513 | 113 | 63 | 1 | 90 | 202 | 168 | 269 | 5.48e-13 | 67.0 |
MS.gene85685.t1 | AT5G07160 | 40.860 | 93 | 55 | 0 | 108 | 200 | 48 | 140 | 1.05e-11 | 61.2 |
MS.gene85685.t1 | AT2G40620 | 38.298 | 94 | 58 | 0 | 107 | 200 | 147 | 240 | 3.66e-11 | 62.0 |
MS.gene85685.t1 | AT1G43700 | 39.362 | 94 | 57 | 0 | 107 | 200 | 193 | 286 | 5.08e-11 | 61.6 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 6.99e-11 | 61.2 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G31370 | 35.849 | 106 | 68 | 0 | 107 | 212 | 200 | 305 | 8.85e-11 | 60.8 |
MS.gene85685.t1 | AT2G21230 | 36.449 | 107 | 63 | 1 | 108 | 214 | 370 | 471 | 9.99e-11 | 60.8 |
MS.gene85685.t1 | AT2G21230 | 36.449 | 107 | 63 | 1 | 108 | 214 | 370 | 471 | 9.99e-11 | 60.8 |
Find 45 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACTATTTCAAGTCTTAAT+TGG | 0.214369 | 6.1:+17789945 | None:intergenic |
GCTCGATTATATTGCTGATT+TGG | 0.235809 | 6.1:-17790599 | MS.gene85685:CDS |
GCATGACCAAGATTTGATTT+TGG | 0.261059 | 6.1:+17791245 | None:intergenic |
TTTGTACCAGTCATTCTCTT+TGG | 0.270280 | 6.1:+17791458 | None:intergenic |
CTAACCATGTTTGATTTCTT+AGG | 0.277873 | 6.1:+17791407 | None:intergenic |
GTATACCGTTTGAGCCTCTT+TGG | 0.278573 | 6.1:+17791146 | None:intergenic |
TTGTACCAGTCATTCTCTTT+GGG | 0.334410 | 6.1:+17791459 | None:intergenic |
ATAAGAGAGCTGAGGTGAAT+AGG | 0.348904 | 6.1:-17789791 | MS.gene85685:CDS |
TTCGATCATGGCAACCCTCT+TGG | 0.403712 | 6.1:-17791355 | MS.gene85685:CDS |
ATGGTTAGACCTTCCTCATA+TGG | 0.444092 | 6.1:-17791392 | MS.gene85685:CDS |
AGTGTACCAAAATCAAATCT+TGG | 0.459311 | 6.1:-17791251 | MS.gene85685:CDS |
CGTCATCAACATTTCGATCA+TGG | 0.470936 | 6.1:-17791367 | MS.gene85685:CDS |
TATTGCTGATTTGGAGCGGA+TGG | 0.492832 | 6.1:-17790590 | MS.gene85685:CDS |
CTATTTCAAGTCTTAATTGG+TGG | 0.497697 | 6.1:+17789948 | None:intergenic |
TCTTAATTGGTGGTGTTCCA+TGG | 0.506174 | 6.1:+17789958 | None:intergenic |
TGGATCCAAAGAGGCTCAAA+CGG | 0.511736 | 6.1:-17791151 | MS.gene85685:intron |
GAGCTGAGGTGAATAGGCTG+AGG | 0.526514 | 6.1:-17789785 | MS.gene85685:CDS |
GGCATCCCAAAGAGAATGAC+TGG | 0.538746 | 6.1:-17791464 | MS.gene85685:CDS |
GTGCAGAAATTCGATTTGCT+AGG | 0.542578 | 6.1:+17790641 | None:intergenic |
AACATGTTGCACACAGAAGA+GGG | 0.550817 | 6.1:-17791437 | MS.gene85685:CDS |
TTGCACACAGAAGAGGGACC+TGG | 0.552875 | 6.1:-17791431 | MS.gene85685:CDS |
TGTTGATGACGATCCATATG+AGG | 0.557119 | 6.1:+17791379 | None:intergenic |
ATGTTTGATTTCTTAGGCCC+AGG | 0.557475 | 6.1:+17791413 | None:intergenic |
AGACTTCAACTTGTGGGCGA+AGG | 0.559195 | 6.1:+17790005 | None:intergenic |
GATTGAGAATAAGAGAGCTG+AGG | 0.559603 | 6.1:-17789799 | MS.gene85685:CDS |
TACTCGCCTCTTGTTTGCCG+AGG | 0.562465 | 6.1:+17791321 | None:intergenic |
GCATCTGCATGTGTTGGTGT+TGG | 0.564639 | 6.1:-17791194 | MS.gene85685:CDS |
AAACAAGAGGCGAGTAGCAG+TGG | 0.565191 | 6.1:-17791314 | MS.gene85685:CDS |
ATGCACTACCGCCACTGATG+TGG | 0.592583 | 6.1:+17791213 | None:intergenic |
TGCACACAGAAGAGGGACCT+GGG | 0.596481 | 6.1:-17791430 | MS.gene85685:CDS |
TTGCTGAAGCACAAAACAAG+AGG | 0.602002 | 6.1:-17789743 | MS.gene85685:intron |
AAACATGTTGCACACAGAAG+AGG | 0.606246 | 6.1:-17791438 | MS.gene85685:CDS |
GGTAGTGCATCTGCATGTGT+TGG | 0.606657 | 6.1:-17791200 | MS.gene85685:CDS |
TCAGCAGTGGTTGTTGACCA+TGG | 0.606900 | 6.1:-17789975 | MS.gene85685:CDS |
AGCTGAGGTGAATAGGCTGA+GGG | 0.614102 | 6.1:-17789784 | MS.gene85685:CDS |
ATTATATTGCTGATTTGGAG+CGG | 0.619255 | 6.1:-17790594 | MS.gene85685:CDS |
AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 6.1:-17789914 | MS.gene85685:intron |
CATTGACCTCGGCAAACAAG+AGG | 0.624902 | 6.1:-17791327 | MS.gene85685:CDS |
AGGTCAATGCTCTTCCAAGA+GGG | 0.642311 | 6.1:+17791341 | None:intergenic |
GCTGAGAAGAACCACATCAG+TGG | 0.645935 | 6.1:-17791224 | MS.gene85685:CDS |
GATGACGATCCATATGAGGA+AGG | 0.651960 | 6.1:+17791383 | None:intergenic |
GAGGTCAATGCTCTTCCAAG+AGG | 0.659112 | 6.1:+17791340 | None:intergenic |
GAGAAGAACCACATCAGTGG+CGG | 0.665888 | 6.1:-17791221 | MS.gene85685:CDS |
TCTTGGAAGAGCATTGACCT+CGG | 0.699535 | 6.1:-17791338 | MS.gene85685:CDS |
TGGGCCTAAGAAATCAAACA+TGG | 0.705886 | 6.1:-17791411 | MS.gene85685:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAATAAATCTATATGT+TGG | - | chr6.1:17789929-17789948 | MS.gene85685:CDS | 10.0% |
!! | CTGAAAAAAAAATTAATAAT+GGG | - | chr6.1:17789812-17789831 | MS.gene85685:intron | 10.0% |
!! | AAAATTGAAACAAAATATCT+CGG | - | chr6.1:17790059-17790078 | MS.gene85685:intron | 15.0% |
!! | GCTGAAAAAAAAATTAATAA+TGG | - | chr6.1:17789811-17789830 | MS.gene85685:intron | 15.0% |
!!! | AAAAAAAAATTAATAATGGG+AGG | - | chr6.1:17789815-17789834 | MS.gene85685:intron | 15.0% |
!!! | GATTTTTTTCAATTTCAATT+TGG | + | chr6.1:17790403-17790422 | None:intergenic | 15.0% |
!! | ACATACTAATGTGAAATAAA+TGG | + | chr6.1:17790963-17790982 | None:intergenic | 20.0% |
!! | ACTCATACATGATAAAAATA+TGG | - | chr6.1:17791197-17791216 | MS.gene85685:CDS | 20.0% |
!! | GTCGATTATTTGTATTAATT+TGG | - | chr6.1:17790502-17790521 | MS.gene85685:intron | 20.0% |
!!! | ATATTATATCGATTATGTGT+AGG | + | chr6.1:17790095-17790114 | None:intergenic | 20.0% |
!!! | CAAATTCGTTTTTTGTTTTA+AGG | + | chr6.1:17791419-17791438 | None:intergenic | 20.0% |
!!! | TTATTAGTTTTTTTGTCTTG+TGG | + | chr6.1:17789521-17789540 | None:intergenic | 20.0% |
! | ATAGATCGATTATGATTGAA+TGG | + | chr6.1:17790563-17790582 | None:intergenic | 25.0% |
! | ATTAGTATGTTTATTTCCAG+TGG | - | chr6.1:17790973-17790992 | MS.gene85685:intron | 25.0% |
! | CAGTTGGCAAATTAAAAATA+TGG | - | chr6.1:17789710-17789729 | MS.gene85685:intron | 25.0% |
! | CATAACACTAAAAGTTTGAT+GGG | - | chr6.1:17789752-17789771 | MS.gene85685:CDS | 25.0% |
! | TAGTATACTGATATATGTTG+CGG | - | chr6.1:17791443-17791462 | MS.gene85685:CDS | 25.0% |
! | TCATAACACTAAAAGTTTGA+TGG | - | chr6.1:17789751-17789770 | MS.gene85685:CDS | 25.0% |
! | TCATGTATCAACTTGTAATT+TGG | - | chr6.1:17790583-17790602 | MS.gene85685:CDS | 25.0% |
! | TCTTGATCTGATTATTTGAA+TGG | - | chr6.1:17790641-17790660 | MS.gene85685:CDS | 25.0% |
!! | CAAATTGAAATTCTTTGAAG+TGG | + | chr6.1:17790483-17790502 | None:intergenic | 25.0% |
!! | CAACTATTTCAAGTCTTAAT+TGG | + | chr6.1:17790854-17790873 | None:intergenic | 25.0% |
!!! | ATATGTTGGTTTAAGTTTCA+TGG | - | chr6.1:17789943-17789962 | MS.gene85685:CDS | 25.0% |
!!! | GAGATTTTTTTTGTATATGC+AGG | - | chr6.1:17790755-17790774 | MS.gene85685:intron | 25.0% |
AAAGAAAGGATACTTCAAGA+AGG | - | chr6.1:17790882-17790901 | MS.gene85685:intron | 30.0% | |
AGTGTACCAAAATCAAATCT+TGG | - | chr6.1:17789545-17789564 | MS.gene85685:intron | 30.0% | |
AGTTTGATGGGAATAGTATT+TGG | - | chr6.1:17789764-17789783 | MS.gene85685:CDS | 30.0% | |
CAAATCAACTATATTAGCCA+GGG | + | chr6.1:17790004-17790023 | None:intergenic | 30.0% | |
TAGTTGTACGAGAAAAAGAA+AGG | - | chr6.1:17790868-17790887 | MS.gene85685:intron | 30.0% | |
TATAATTATATGTGTGCTCG+CGG | - | chr6.1:17791356-17791375 | MS.gene85685:CDS | 30.0% | |
TCAAATCAACTATATTAGCC+AGG | + | chr6.1:17790005-17790024 | None:intergenic | 30.0% | |
TGTTTGATCCAAAACAACAA+GGG | - | chr6.1:17790679-17790698 | MS.gene85685:intron | 30.0% | |
TTGTTTGATCCAAAACAACA+AGG | - | chr6.1:17790678-17790697 | MS.gene85685:intron | 30.0% | |
! | AAAGTGAGAGTATAGATAGA+AGG | - | chr6.1:17791274-17791293 | MS.gene85685:CDS | 30.0% |
! | ACTCTTCACAAGTTTTTGTT+TGG | + | chr6.1:17790728-17790747 | None:intergenic | 30.0% |
! | CTAACCATGTTTGATTTCTT+AGG | + | chr6.1:17789392-17789411 | None:intergenic | 30.0% |
! | CTATTTCAAGTCTTAATTGG+TGG | + | chr6.1:17790851-17790870 | None:intergenic | 30.0% |
! | TTTTGTAGACTTCAACTTGT+GGG | + | chr6.1:17790800-17790819 | None:intergenic | 30.0% |
! | TTTTGTCTTCTGTTGATCTT+AGG | - | chr6.1:17790130-17790149 | MS.gene85685:intron | 30.0% |
! | TTTTTGTAGACTTCAACTTG+TGG | + | chr6.1:17790801-17790820 | None:intergenic | 30.0% |
!! | AGTTTTTGTTTGGGTAGATA+TGG | + | chr6.1:17790718-17790737 | None:intergenic | 30.0% |
!! | ATTATATTGCTGATTTGGAG+CGG | - | chr6.1:17790202-17790221 | MS.gene85685:intron | 30.0% |
!! | CTCTTCACAAGTTTTTGTTT+GGG | + | chr6.1:17790727-17790746 | None:intergenic | 30.0% |
!!! | AATGGGAGGTTGTTTTATTT+AGG | - | chr6.1:17789829-17789848 | MS.gene85685:intron | 30.0% |
!!! | TGTTTTATTTAGGCTTGTCA+TGG | - | chr6.1:17789839-17789858 | MS.gene85685:intron | 30.0% |
AAGTCTACAAAAATCAGCAG+TGG | - | chr6.1:17790808-17790827 | MS.gene85685:intron | 35.0% | |
CATCTATTAATGTGATACCC+TGG | - | chr6.1:17789984-17790003 | MS.gene85685:CDS | 35.0% | |
CATTCTCATCAAAAGACCAT+AGG | + | chr6.1:17790357-17790376 | None:intergenic | 35.0% | |
GAAAATACACGCAAACACAA+AGG | + | chr6.1:17791227-17791246 | None:intergenic | 35.0% | |
TGAGCAACACAAAAATCAGT+TGG | - | chr6.1:17789694-17789713 | MS.gene85685:intron | 35.0% | |
TGATCAAGCAACACAAAAAC+TGG | - | chr6.1:17789625-17789644 | MS.gene85685:intron | 35.0% | |
TTGTACCAGTCATTCTCTTT+GGG | + | chr6.1:17789340-17789359 | None:intergenic | 35.0% | |
TTTGTACCAGTCATTCTCTT+TGG | + | chr6.1:17789341-17789360 | None:intergenic | 35.0% | |
TTTGTTTGGGTAGATATGGT+GGG | + | chr6.1:17790714-17790733 | None:intergenic | 35.0% | |
! | GCTCGATTATATTGCTGATT+TGG | - | chr6.1:17790197-17790216 | MS.gene85685:intron | 35.0% |
!! | GCATGACCAAGATTTGATTT+TGG | + | chr6.1:17789554-17789573 | None:intergenic | 35.0% |
!! | TTTTGTTTGGGTAGATATGG+TGG | + | chr6.1:17790715-17790734 | None:intergenic | 35.0% |
!!! | ATATGGATCCCTTGTTGTTT+TGG | + | chr6.1:17790690-17790709 | None:intergenic | 35.0% |
AAACATGTTGCACACAGAAG+AGG | - | chr6.1:17789358-17789377 | MS.gene85685:intron | 40.0% | |
AACATGTTGCACACAGAAGA+GGG | - | chr6.1:17789359-17789378 | MS.gene85685:intron | 40.0% | |
ACTGATATATGTTGCGGTTG+TGG | - | chr6.1:17791449-17791468 | MS.gene85685:CDS | 40.0% | |
ATAAGAGAGCTGAGGTGAAT+AGG | - | chr6.1:17791005-17791024 | MS.gene85685:intron | 40.0% | |
ATGGTTAGACCTTCCTCATA+TGG | - | chr6.1:17789404-17789423 | MS.gene85685:intron | 40.0% | |
CACAAAAACTGGATCCAAAG+AGG | - | chr6.1:17789636-17789655 | MS.gene85685:intron | 40.0% | |
CGTCATCAACATTTCGATCA+TGG | - | chr6.1:17789429-17789448 | MS.gene85685:intron | 40.0% | |
CTCTTATTCTCAATCTCCAC+TGG | + | chr6.1:17790992-17791011 | None:intergenic | 40.0% | |
GATTGAGAATAAGAGAGCTG+AGG | - | chr6.1:17790997-17791016 | MS.gene85685:intron | 40.0% | |
GCGGATGGAAAAATATTTGC+AGG | - | chr6.1:17790221-17790240 | MS.gene85685:intron | 40.0% | |
TGGGCCTAAGAAATCAAACA+TGG | - | chr6.1:17789385-17789404 | MS.gene85685:intron | 40.0% | |
TTGCTGAAGCACAAAACAAG+AGG | - | chr6.1:17791053-17791072 | MS.gene85685:intron | 40.0% | |
! | ATGTTTGATTTCTTAGGCCC+AGG | + | chr6.1:17789386-17789405 | None:intergenic | 40.0% |
! | GTGCAGAAATTCGATTTGCT+AGG | + | chr6.1:17790158-17790177 | None:intergenic | 40.0% |
!! | TCTTAATTGGTGGTGTTCCA+TGG | + | chr6.1:17790841-17790860 | None:intergenic | 40.0% |
!! | TGTTGATGACGATCCATATG+AGG | + | chr6.1:17789420-17789439 | None:intergenic | 40.0% |
!! | TTCTTTGAAGTGGTAACCAG+CGG | + | chr6.1:17790473-17790492 | None:intergenic | 40.0% |
AGACCATAGGCTTTCACGAT+CGG | + | chr6.1:17790344-17790363 | None:intergenic | 45.0% | |
AGGTCAATGCTCTTCCAAGA+GGG | + | chr6.1:17789458-17789477 | None:intergenic | 45.0% | |
GATGACGATCCATATGAGGA+AGG | + | chr6.1:17789416-17789435 | None:intergenic | 45.0% | |
GTATACCGTTTGAGCCTCTT+TGG | + | chr6.1:17789653-17789672 | None:intergenic | 45.0% | |
TGGATCCAAAGAGGCTCAAA+CGG | - | chr6.1:17789645-17789664 | MS.gene85685:intron | 45.0% | |
! | GGGTAGATATGGTGGGAATA+TGG | + | chr6.1:17790707-17790726 | None:intergenic | 45.0% |
!! | TATTGCTGATTTGGAGCGGA+TGG | - | chr6.1:17790206-17790225 | MS.gene85685:intron | 45.0% |
!! | TCTTGGAAGAGCATTGACCT+CGG | - | chr6.1:17789458-17789477 | MS.gene85685:intron | 45.0% |
!!! | TTTTTCAAAATTTATAATTA+GGG | - | chr6.1:17791148-17791167 | MS.gene85685:intron | 5.0% |
!!! | TTTTTTCAAAATTTATAATT+AGG | - | chr6.1:17791147-17791166 | MS.gene85685:intron | 5.0% |
AAACAAGAGGCGAGTAGCAG+TGG | - | chr6.1:17789482-17789501 | MS.gene85685:intron | 50.0% | |
ACCATAGGCTTTCACGATCG+GGG | + | chr6.1:17790342-17790361 | None:intergenic | 50.0% | |
AGACTTCAACTTGTGGGCGA+AGG | + | chr6.1:17790794-17790813 | None:intergenic | 50.0% | |
AGCTGAGGTGAATAGGCTGA+GGG | - | chr6.1:17791012-17791031 | MS.gene85685:intron | 50.0% | |
ATGTTGCGGTTGTGGCATGT+GGG | - | chr6.1:17791457-17791476 | MS.gene85685:CDS | 50.0% | |
CATTGACCTCGGCAAACAAG+AGG | - | chr6.1:17789469-17789488 | MS.gene85685:intron | 50.0% | |
GACCATAGGCTTTCACGATC+GGG | + | chr6.1:17790343-17790362 | None:intergenic | 50.0% | |
GAGAAGAACCACATCAGTGG+CGG | - | chr6.1:17789575-17789594 | MS.gene85685:intron | 50.0% | |
GAGGTCAATGCTCTTCCAAG+AGG | + | chr6.1:17789459-17789478 | None:intergenic | 50.0% | |
GCTGAGAAGAACCACATCAG+TGG | - | chr6.1:17789572-17789591 | MS.gene85685:intron | 50.0% | |
GGCATCCCAAAGAGAATGAC+TGG | - | chr6.1:17789332-17789351 | MS.gene85685:intron | 50.0% | |
GGTAGTGCATCTGCATGTGT+TGG | - | chr6.1:17789596-17789615 | MS.gene85685:intron | 50.0% | |
TATGTTGCGGTTGTGGCATG+TGG | - | chr6.1:17791456-17791475 | MS.gene85685:CDS | 50.0% | |
TCAGCAGTGGTTGTTGACCA+TGG | - | chr6.1:17790821-17790840 | MS.gene85685:intron | 50.0% | |
TTCGATCATGGCAACCCTCT+TGG | - | chr6.1:17789441-17789460 | MS.gene85685:intron | 50.0% | |
! | GCATCTGCATGTGTTGGTGT+TGG | - | chr6.1:17789602-17789621 | MS.gene85685:intron | 50.0% |
ATGCACTACCGCCACTGATG+TGG | + | chr6.1:17789586-17789605 | None:intergenic | 55.0% | |
GAGCTGAGGTGAATAGGCTG+AGG | - | chr6.1:17791011-17791030 | MS.gene85685:intron | 55.0% | |
TCCCCGATCGTGAAAGCCTA+TGG | - | chr6.1:17790338-17790357 | MS.gene85685:intron | 55.0% | |
TGCACACAGAAGAGGGACCT+GGG | - | chr6.1:17789366-17789385 | MS.gene85685:intron | 55.0% | |
TGCTCTACATGTAGAGCCGC+TGG | - | chr6.1:17790454-17790473 | MS.gene85685:intron | 55.0% | |
TTGCACACAGAAGAGGGACC+TGG | - | chr6.1:17789365-17789384 | MS.gene85685:intron | 55.0% | |
! | TACTCGCCTCTTGTTTGCCG+AGG | + | chr6.1:17789478-17789497 | None:intergenic | 55.0% |
CGGTTGTGGCATGTGGGTAG+GGG | - | chr6.1:17791463-17791482 | MS.gene85685:CDS | 60.0% | |
GCGGTTGTGGCATGTGGGTA+GGG | - | chr6.1:17791462-17791481 | MS.gene85685:CDS | 60.0% | |
TGCGGTTGTGGCATGTGGGT+AGG | - | chr6.1:17791461-17791480 | MS.gene85685:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 17789326 | 17791492 | 17789326 | ID=MS.gene85685 |
chr6.1 | mRNA | 17789326 | 17791492 | 17789326 | ID=MS.gene85685.t1;Parent=MS.gene85685 |
chr6.1 | exon | 17791152 | 17791492 | 17791152 | ID=MS.gene85685.t1.exon1;Parent=MS.gene85685.t1 |
chr6.1 | CDS | 17791152 | 17791492 | 17791152 | ID=cds.MS.gene85685.t1;Parent=MS.gene85685.t1 |
chr6.1 | exon | 17790576 | 17790666 | 17790576 | ID=MS.gene85685.t1.exon2;Parent=MS.gene85685.t1 |
chr6.1 | CDS | 17790576 | 17790666 | 17790576 | ID=cds.MS.gene85685.t1;Parent=MS.gene85685.t1 |
chr6.1 | exon | 17789915 | 17790041 | 17789915 | ID=MS.gene85685.t1.exon3;Parent=MS.gene85685.t1 |
chr6.1 | CDS | 17789915 | 17790041 | 17789915 | ID=cds.MS.gene85685.t1;Parent=MS.gene85685.t1 |
chr6.1 | exon | 17789744 | 17789825 | 17789744 | ID=MS.gene85685.t1.exon4;Parent=MS.gene85685.t1 |
chr6.1 | CDS | 17789744 | 17789825 | 17789744 | ID=cds.MS.gene85685.t1;Parent=MS.gene85685.t1 |
chr6.1 | exon | 17789326 | 17789335 | 17789326 | ID=MS.gene85685.t1.exon5;Parent=MS.gene85685.t1 |
chr6.1 | CDS | 17789326 | 17789335 | 17789326 | ID=cds.MS.gene85685.t1;Parent=MS.gene85685.t1 |
Gene Sequence |
Protein sequence |