AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85937

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85937.t1 MTR_2g104590 74.411 297 10 4 1 297 2 232 2.37e-148 416
MS.gene85937.t1 MTR_8g069740 74.444 270 67 2 1 270 1 268 3.22e-140 396
MS.gene85937.t1 MTR_2g104650 68.919 296 72 4 1 296 1 276 4.57e-126 361
MS.gene85937.t1 MTR_2g104550 41.608 286 146 6 13 286 33 309 5.52e-58 189
MS.gene85937.t1 MTR_4g009540 38.436 307 153 8 14 286 24 328 3.75e-55 182
MS.gene85937.t1 MTR_2g104620 52.000 225 51 5 1 225 1 168 4.63e-53 171
MS.gene85937.t1 MTR_8g009020 44.255 235 115 5 65 284 85 318 1.24e-51 172
MS.gene85937.t1 MTR_2g104490 39.161 286 149 8 13 286 33 305 6.74e-51 170
MS.gene85937.t1 MTR_4g009110 41.702 235 122 5 65 286 115 347 1.22e-48 166
MS.gene85937.t1 MTR_5g014520 46.842 190 95 3 99 287 144 328 2.23e-47 162
MS.gene85937.t1 MTR_4g009540 36.678 289 147 8 14 268 24 310 1.51e-46 159
MS.gene85937.t1 MTR_2g104500 39.209 278 140 8 13 284 13 267 6.84e-45 154
MS.gene85937.t1 MTR_8g009010 36.093 302 123 9 13 287 12 270 8.55e-45 154
MS.gene85937.t1 MTR_5g014600 43.878 196 98 4 103 286 137 332 2.38e-43 151
MS.gene85937.t1 MTR_2g104560 43.939 198 89 6 96 284 36 220 2.63e-43 148
MS.gene85937.t1 MTR_5g014560 39.437 213 114 5 86 287 94 302 3.69e-43 150
MS.gene85937.t1 MTR_2g104490 38.745 271 135 10 13 268 33 287 4.85e-43 149
MS.gene85937.t1 MTR_4g097940 34.333 300 160 11 12 286 36 323 3.11e-42 148
MS.gene85937.t1 MTR_2g010450 43.182 176 97 2 110 284 173 346 3.10e-41 146
MS.gene85937.t1 MTR_2g104530 44.397 232 110 8 64 284 46 269 6.39e-41 143
MS.gene85937.t1 MTR_0246s0020 39.303 201 119 3 90 287 173 373 9.37e-41 145
MS.gene85937.t1 MTR_0250s0040 39.037 187 108 3 103 287 77 259 2.70e-39 139
MS.gene85937.t1 MTR_5g014640 39.796 196 109 3 97 290 137 325 3.20e-39 140
MS.gene85937.t1 MTR_0011s0210 41.279 172 97 2 114 284 183 351 5.51e-39 140
MS.gene85937.t1 MTR_4g067010 32.770 296 171 10 10 286 28 314 2.93e-38 137
MS.gene85937.t1 MTR_4g066460 41.622 185 101 4 103 286 144 322 7.87e-38 137
MS.gene85937.t1 MTR_4g097920 33.000 300 164 11 12 286 21 308 8.89e-38 136
MS.gene85937.t1 MTR_4g092700 39.604 202 114 4 92 288 132 330 1.15e-37 136
MS.gene85937.t1 MTR_4g097920 33.000 300 164 11 12 286 36 323 1.39e-37 136
MS.gene85937.t1 MTR_0011s0260 40.116 172 99 2 114 284 183 351 1.71e-37 136
MS.gene85937.t1 MTR_7g080780 38.306 248 135 5 39 284 93 324 1.94e-37 135
MS.gene85937.t1 MTR_7g080780 38.306 248 135 5 39 284 80 311 2.02e-37 135
MS.gene85937.t1 MTR_6g047570 33.557 298 174 11 3 287 44 330 4.32e-36 132
MS.gene85937.t1 MTR_4g066380 33.225 307 163 8 10 287 27 320 4.19e-35 129
MS.gene85937.t1 MTR_4g097950 40.206 194 104 5 100 285 57 246 1.46e-33 123
MS.gene85937.t1 MTR_0246s0020 38.043 184 111 3 90 270 173 356 6.76e-33 124
MS.gene85937.t1 MTR_0246s0050 31.687 243 143 6 51 287 90 315 2.39e-29 114
MS.gene85937.t1 MTR_4g098035 31.687 243 143 6 51 287 111 336 3.02e-29 114
MS.gene85937.t1 MTR_4g009510 40.341 176 89 6 117 290 45 206 2.43e-28 108
MS.gene85937.t1 MTR_4g009420 38.506 174 84 4 118 290 47 198 2.58e-27 105
MS.gene85937.t1 MTR_7g451650 35.057 174 95 4 118 290 42 198 4.26e-26 102
MS.gene85937.t1 MTR_7g050350 36.486 148 80 3 144 290 2 136 3.08e-22 90.5
MS.gene85937.t1 MTR_7g451650 36.486 148 80 3 144 290 2 136 3.08e-22 90.5
MS.gene85937.t1 MTR_4g009420 37.179 156 75 4 118 272 47 180 7.07e-20 85.9
MS.gene85937.t1 MTR_5g014550 37.302 126 75 2 143 267 53 175 4.08e-19 84.0
MS.gene85937.t1 MTR_7g451650 35.256 156 83 5 118 272 42 180 6.69e-19 83.2
MS.gene85937.t1 MTR_6g047550 43.011 93 52 1 90 181 148 240 3.08e-15 74.7
MS.gene85937.t1 MTR_5g030430 25.000 164 110 3 104 254 483 646 1.87e-12 67.8
MS.gene85937.t1 MTR_8g064700 24.664 223 143 7 65 265 179 398 2.30e-12 67.4
MS.gene85937.t1 MTR_3g030700 27.545 167 115 4 104 267 189 352 6.27e-11 62.8
MS.gene85937.t1 MTR_1g072320 23.429 175 118 4 82 248 443 609 9.34e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85937.t1 AT4G37850 42.784 194 108 2 93 284 129 321 2.81e-42 148
MS.gene85937.t1 AT4G37850 42.784 194 108 2 93 284 129 321 2.81e-42 148
MS.gene85937.t1 AT2G22750 47.778 180 92 2 106 283 118 297 5.36e-40 142
MS.gene85937.t1 AT2G22750 47.778 180 92 2 106 283 146 325 8.95e-40 142
MS.gene85937.t1 AT2G22750 47.778 180 92 2 106 283 142 321 9.49e-40 142
MS.gene85937.t1 AT2G22750 47.778 180 91 3 106 283 118 296 1.75e-38 137
MS.gene85937.t1 AT2G22750 46.667 180 93 2 106 283 146 324 2.88e-38 138
MS.gene85937.t1 AT2G22770 37.297 185 103 3 114 285 132 316 4.08e-31 119
MS.gene85937.t1 AT2G22760 31.222 221 148 4 69 286 74 293 4.53e-31 118
MS.gene85937.t1 AT2G22760 30.693 202 137 3 69 268 74 274 1.57e-26 105
MS.gene85937.t1 AT4G29930 24.887 221 143 6 72 271 11 229 8.52e-16 75.9
MS.gene85937.t1 AT4G29930 25.229 218 140 6 72 268 11 226 1.08e-15 75.9
MS.gene85937.t1 AT4G29930 25.229 218 140 6 72 268 11 226 1.08e-15 75.9
MS.gene85937.t1 AT4G29930 26.699 206 132 6 72 271 11 203 1.28e-15 74.7
MS.gene85937.t1 AT4G17880 26.512 215 110 7 69 254 363 558 6.28e-15 75.5
MS.gene85937.t1 AT4G29930 26.214 206 130 5 72 271 11 200 7.43e-15 72.8
MS.gene85937.t1 AT5G57150 24.020 204 147 4 72 268 12 214 8.47e-15 72.4
MS.gene85937.t1 AT4G29930 26.601 203 127 5 72 268 11 197 8.89e-15 72.8
MS.gene85937.t1 AT4G09820 32.680 153 76 4 102 253 351 477 1.15e-14 74.3
MS.gene85937.t1 AT5G57150 23.671 207 150 4 72 271 12 217 2.05e-14 72.0
MS.gene85937.t1 AT5G46760 28.659 164 83 5 111 254 412 561 3.86e-14 73.2
MS.gene85937.t1 AT5G57150 23.415 205 149 4 72 269 13 216 2.16e-13 68.6
MS.gene85937.t1 AT1G32640 27.044 159 103 3 104 254 442 595 2.92e-13 70.5
MS.gene85937.t1 AT5G57150 23.415 205 149 4 72 269 13 216 3.58e-13 68.2
MS.gene85937.t1 AT5G57150 23.963 217 156 5 72 280 12 227 4.77e-13 68.2
MS.gene85937.t1 AT1G63650 28.289 152 92 3 111 246 402 552 1.58e-11 65.1
MS.gene85937.t1 AT1G63650 28.289 152 92 3 111 246 402 552 1.58e-11 65.1
MS.gene85937.t1 AT1G63650 28.289 152 92 3 111 246 402 552 1.58e-11 65.1
MS.gene85937.t1 AT5G41315 27.564 156 93 3 111 246 443 598 4.47e-11 63.9
MS.gene85937.t1 AT5G41315 27.564 156 93 3 111 246 438 593 4.58e-11 63.9
MS.gene85937.t1 AT5G41315 27.564 156 93 3 111 246 446 601 4.99e-11 63.5
MS.gene85937.t1 AT2G46510 28.689 122 66 3 104 225 385 485 7.11e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTGAAGTGAGGGTTCT+AGG 0.256835 2.1:+1323293 MS.gene85937:CDS
ACTAGGCCAGTTGTGAAAAT+AGG 0.274393 2.1:-1322619 None:intergenic
TGGCACTGTCATTGTAATTA+AGG 0.295958 2.1:-1323220 None:intergenic
CAAGACATTGGTAGTTGTTA+TGG 0.303801 2.1:-1323402 None:intergenic
ACTACCAATGTCTTGCCATT+TGG 0.326554 2.1:+1323410 MS.gene85937:CDS
AAGAGTAGTGGCTACGTTGC+AGG 0.356620 2.1:+1323674 MS.gene85937:CDS
ATTACTTGCCTGAGCAATAA+TGG 0.372110 2.1:-1323450 None:intergenic
AGTATATAAGTTGTTGGTAT+TGG 0.379293 2.1:-1322712 None:intergenic
ACATAATAACAGAGAGGAAC+AGG 0.423437 2.1:+1322869 MS.gene85937:CDS
CTCTTCATCAAATATGTTGT+TGG 0.428970 2.1:-1322548 None:intergenic
CTAGGCCAGTTGTGAAAATA+GGG 0.436339 2.1:-1322618 None:intergenic
TAAGACAGTATATAAGTTGT+TGG 0.443854 2.1:-1322718 None:intergenic
ATGAACACTAAAGAATGTTA+TGG 0.445823 2.1:+1323251 MS.gene85937:CDS
AGCTTGAAGTGAGGGTTCTA+GGG 0.452434 2.1:+1323294 MS.gene85937:CDS
TCTGATTCATGATATCTTTG+AGG 0.462411 2.1:-1322573 None:intergenic
ATTTATACCTGGATTGAAGA+AGG 0.472752 2.1:+1322930 MS.gene85937:CDS
TAACATCACCATTATTGCTC+AGG 0.473971 2.1:+1323442 MS.gene85937:CDS
TCTTCTTTGAATTCGACCCT+TGG 0.481461 2.1:-1322819 None:intergenic
AAGGAGATGAGATCTTGTTA+TGG 0.492453 2.1:-1323201 None:intergenic
AGAACCCTCACTTCAAGCTC+TGG 0.495246 2.1:-1323290 None:intergenic
GAAGAAGACATCAAGAAGAA+AGG 0.507699 2.1:+1323161 MS.gene85937:CDS
GACATCAAGAAGAAAGGTGC+AGG 0.512048 2.1:+1323167 MS.gene85937:CDS
TTTGCCTTTGTCATCATCAA+AGG 0.512672 2.1:+1322789 MS.gene85937:CDS
TGTTGAATGAGAGACATTGA+TGG 0.516688 2.1:-1322656 None:intergenic
GATTCGCTGTGGGAAGCAAA+AGG 0.520238 2.1:+1323334 MS.gene85937:CDS
AGACTAACCTTCTTCAATCC+AGG 0.524279 2.1:-1322937 None:intergenic
ATTTCCAGAGCTTGAAGTGA+GGG 0.525230 2.1:+1323286 MS.gene85937:CDS
ATGACAAAGGCAAAGAATCA+TGG 0.529186 2.1:-1322780 None:intergenic
ATGTTAAGAGTGTTTCCAAA+TGG 0.530024 2.1:-1323425 None:intergenic
GAACTTTCAGCATTTATACC+TGG 0.532111 2.1:+1322919 MS.gene85937:CDS
TTTAGTGTTCATTTCACCCA+TGG 0.540015 2.1:-1323240 None:intergenic
ACGGACAAGGTTCATGTACT+AGG 0.549231 2.1:+1323089 MS.gene85937:CDS
TGGACGAGTTGTTGTTGACT+AGG 0.551791 2.1:-1322636 None:intergenic
TGTTGGTATTGGTAATGAGC+TGG 0.555632 2.1:-1322701 None:intergenic
GAATCATGGTGTTGTTCAGT+TGG 0.556807 2.1:-1322766 None:intergenic
AATTACAATGACAGTGCCAT+GGG 0.574092 2.1:+1323224 MS.gene85937:CDS
AGTTGGTGGTAACAATGTAG+TGG 0.574871 2.1:-1322749 None:intergenic
GTTTCCAAATGGCAAGACAT+TGG 0.577033 2.1:-1323414 None:intergenic
TGAAGTGAGGGTTCTAGGGA+AGG 0.581565 2.1:+1323298 MS.gene85937:CDS
TAATTACAATGACAGTGCCA+TGG 0.581993 2.1:+1323223 MS.gene85937:CDS
CATTTCCAGAGCTTGAAGTG+AGG 0.591406 2.1:+1323285 MS.gene85937:CDS
AGTTGTGAAAATAGGGACAC+TGG 0.603100 2.1:-1322611 None:intergenic
TCATCAAAGGCTAACAACCA+AGG 0.608148 2.1:+1322802 MS.gene85937:CDS
TCATGGTGTTGTTCAGTTGG+TGG 0.611030 2.1:-1322763 None:intergenic
TTAGCCTTTGATGATGACAA+AGG 0.628673 2.1:-1322793 None:intergenic
TGTTAATCAAGATTCGCTGT+GGG 0.635001 2.1:+1323324 MS.gene85937:CDS
CATCAAAGGCTAACAACCAA+GGG 0.638491 2.1:+1322803 MS.gene85937:CDS
GTGTTAATCAAGATTCGCTG+TGG 0.639073 2.1:+1323323 MS.gene85937:CDS
TAAATACAAGTTGACCGTGA+AGG 0.646419 2.1:+1323635 MS.gene85937:CDS
TGGGAAGCAAAAGGAAATTG+TGG 0.650519 2.1:+1323343 MS.gene85937:CDS
GGGACACTGGACTGATCTTG+TGG 0.651566 2.1:-1322598 None:intergenic
AATGACTGTGTAGACGGACA+AGG 0.665256 2.1:+1323076 MS.gene85937:intron
GCTCTGGAAATGTTTCATTG+TGG 0.678911 2.1:-1323274 None:intergenic
AGGAGAAGCTGTCAAGTACG+TGG 0.701643 2.1:+1323109 MS.gene85937:CDS
TAGATCACATAATAACAGAG+AGG 0.731708 2.1:+1322863 MS.gene85937:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAAGAAAGGAAT+TGG - chr2.1:1322995-1323014 None:intergenic 15.0%
!! GAAACTTACATTGTAATATA+TGG - chr2.1:1323572-1323591 None:intergenic 20.0%
!! TCCAGAAAAAAAATTAAGAA+AGG - chr2.1:1323001-1323020 None:intergenic 20.0%
!!! ACTTTTATAGTAGTTATCAT+TGG + chr2.1:1323028-1323047 MS.gene85937:intron 20.0%
!!! TCCTTTCTTAATTTTTTTTC+TGG + chr2.1:1322997-1323016 MS.gene85937:intron 20.0%
!!! TGAATTGTTTTTCTTTTTTG+TGG - chr2.1:1323478-1323497 None:intergenic 20.0%
! AGTATATAAGTTGTTGGTAT+TGG - chr2.1:1322715-1322734 None:intergenic 25.0%
! ATGAACACTAAAGAATGTTA+TGG + chr2.1:1323251-1323270 MS.gene85937:CDS 25.0%
! TAAGACAGTATATAAGTTGT+TGG - chr2.1:1322721-1322740 None:intergenic 25.0%
!! TTGTAATTGATTCTACAGAT+GGG + chr2.1:1323609-1323628 MS.gene85937:intron 25.0%
!! TTTGTAATTGATTCTACAGA+TGG + chr2.1:1323608-1323627 MS.gene85937:intron 25.0%
AGTGAAAAAACTAAGAGTAG+TGG + chr2.1:1323662-1323681 MS.gene85937:CDS 30.0%
ATTTATACCTGGATTGAAGA+AGG + chr2.1:1322930-1322949 MS.gene85937:CDS 30.0%
CTCTTCATCAAATATGTTGT+TGG - chr2.1:1322551-1322570 None:intergenic 30.0%
GATAAGAATCAAACTTGAGT+TGG - chr2.1:1323526-1323545 None:intergenic 30.0%
TAGATCACATAATAACAGAG+AGG + chr2.1:1322863-1322882 MS.gene85937:CDS 30.0%
TCTGATTCATGATATCTTTG+AGG - chr2.1:1322576-1322595 None:intergenic 30.0%
TTATCTAATGACTGTGTAGA+CGG + chr2.1:1323070-1323089 MS.gene85937:intron 30.0%
!! ATGTTAAGAGTGTTTCCAAA+TGG - chr2.1:1323428-1323447 None:intergenic 30.0%
!!! TTTTTTCACTAGATCCTTCA+CGG - chr2.1:1323652-1323671 None:intergenic 30.0%
AAGGAGATGAGATCTTGTTA+TGG - chr2.1:1323204-1323223 None:intergenic 35.0%
AATTACAATGACAGTGCCAT+GGG + chr2.1:1323224-1323243 MS.gene85937:CDS 35.0%
ACATAATAACAGAGAGGAAC+AGG + chr2.1:1322869-1322888 MS.gene85937:CDS 35.0%
ATGACAAAGGCAAAGAATCA+TGG - chr2.1:1322783-1322802 None:intergenic 35.0%
ATTACTTGCCTGAGCAATAA+TGG - chr2.1:1323453-1323472 None:intergenic 35.0%
GAACTTTCAGCATTTATACC+TGG + chr2.1:1322919-1322938 MS.gene85937:CDS 35.0%
GAAGAAGACATCAAGAAGAA+AGG + chr2.1:1323161-1323180 MS.gene85937:CDS 35.0%
TAACATCACCATTATTGCTC+AGG + chr2.1:1323442-1323461 MS.gene85937:CDS 35.0%
TAATTACAATGACAGTGCCA+TGG + chr2.1:1323223-1323242 MS.gene85937:CDS 35.0%
TGGCACTGTCATTGTAATTA+AGG - chr2.1:1323223-1323242 None:intergenic 35.0%
TGTTAATCAAGATTCGCTGT+GGG + chr2.1:1323324-1323343 MS.gene85937:CDS 35.0%
TGTTGAATGAGAGACATTGA+TGG - chr2.1:1322659-1322678 None:intergenic 35.0%
TTTAGTGTTCATTTCACCCA+TGG - chr2.1:1323243-1323262 None:intergenic 35.0%
TTTGCCTTTGTCATCATCAA+AGG + chr2.1:1322789-1322808 MS.gene85937:CDS 35.0%
! CAAGACATTGGTAGTTGTTA+TGG - chr2.1:1323405-1323424 None:intergenic 35.0%
! TAAATACAAGTTGACCGTGA+AGG + chr2.1:1323635-1323654 MS.gene85937:CDS 35.0%
!! TTAGCCTTTGATGATGACAA+AGG - chr2.1:1322796-1322815 None:intergenic 35.0%
ACTACCAATGTCTTGCCATT+TGG + chr2.1:1323410-1323429 MS.gene85937:CDS 40.0%
ACTAGGCCAGTTGTGAAAAT+AGG - chr2.1:1322622-1322641 None:intergenic 40.0%
AGACTAACCTTCTTCAATCC+AGG - chr2.1:1322940-1322959 None:intergenic 40.0%
AGTTGTGAAAATAGGGACAC+TGG - chr2.1:1322614-1322633 None:intergenic 40.0%
ATTTCCAGAGCTTGAAGTGA+GGG + chr2.1:1323286-1323305 MS.gene85937:CDS 40.0%
CATCAAAGGCTAACAACCAA+GGG + chr2.1:1322803-1322822 MS.gene85937:CDS 40.0%
CTAGGCCAGTTGTGAAAATA+GGG - chr2.1:1322621-1322640 None:intergenic 40.0%
GGTTCACATATCTAGTGATG+AGG - chr2.1:1322974-1322993 None:intergenic 40.0%
GTGTTAATCAAGATTCGCTG+TGG + chr2.1:1323323-1323342 MS.gene85937:CDS 40.0%
GTTTCCAAATGGCAAGACAT+TGG - chr2.1:1323417-1323436 None:intergenic 40.0%
TCATCAAAGGCTAACAACCA+AGG + chr2.1:1322802-1322821 MS.gene85937:CDS 40.0%
TCTTCTTTGAATTCGACCCT+TGG - chr2.1:1322822-1322841 None:intergenic 40.0%
TGGGAAGCAAAAGGAAATTG+TGG + chr2.1:1323343-1323362 MS.gene85937:CDS 40.0%
! AGTGTCCCTATTTTCACAAC+TGG + chr2.1:1322613-1322632 MS.gene85937:CDS 40.0%
!! AGTTGGTGGTAACAATGTAG+TGG - chr2.1:1322752-1322771 None:intergenic 40.0%
!! GAATCATGGTGTTGTTCAGT+TGG - chr2.1:1322769-1322788 None:intergenic 40.0%
!! GCTCTGGAAATGTTTCATTG+TGG - chr2.1:1323277-1323296 None:intergenic 40.0%
!! TGTTGGTATTGGTAATGAGC+TGG - chr2.1:1322704-1322723 None:intergenic 40.0%
AATGACTGTGTAGACGGACA+AGG + chr2.1:1323076-1323095 MS.gene85937:intron 45.0%
ACGGACAAGGTTCATGTACT+AGG + chr2.1:1323089-1323108 MS.gene85937:CDS 45.0%
AGCTTGAAGTGAGGGTTCTA+GGG + chr2.1:1323294-1323313 MS.gene85937:CDS 45.0%
CATTTCCAGAGCTTGAAGTG+AGG + chr2.1:1323285-1323304 MS.gene85937:CDS 45.0%
! GACATCAAGAAGAAAGGTGC+AGG + chr2.1:1323167-1323186 MS.gene85937:CDS 45.0%
! TGGACGAGTTGTTGTTGACT+AGG - chr2.1:1322639-1322658 None:intergenic 45.0%
!! TCATGGTGTTGTTCAGTTGG+TGG - chr2.1:1322766-1322785 None:intergenic 45.0%
!! TATATTATAGTAATTAAATT+TGG - chr2.1:1323548-1323567 None:intergenic 5.0%
AAGAGTAGTGGCTACGTTGC+AGG + chr2.1:1323674-1323693 MS.gene85937:CDS 50.0%
AGAACCCTCACTTCAAGCTC+TGG - chr2.1:1323293-1323312 None:intergenic 50.0%
AGGAGAAGCTGTCAAGTACG+TGG + chr2.1:1323109-1323128 MS.gene85937:CDS 50.0%
GAGCTTGAAGTGAGGGTTCT+AGG + chr2.1:1323293-1323312 MS.gene85937:CDS 50.0%
GATTCGCTGTGGGAAGCAAA+AGG + chr2.1:1323334-1323353 MS.gene85937:CDS 50.0%
!! TGAAGTGAGGGTTCTAGGGA+AGG + chr2.1:1323298-1323317 MS.gene85937:CDS 50.0%
GGGACACTGGACTGATCTTG+TGG - chr2.1:1322601-1322620 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1322526 1323719 1322526 ID=MS.gene85937
chr2.1 mRNA 1322526 1323719 1322526 ID=MS.gene85937.t1;Parent=MS.gene85937
chr2.1 exon 1322526 1322951 1322526 ID=MS.gene85937.t1.exon1;Parent=MS.gene85937.t1
chr2.1 CDS 1322526 1322951 1322526 ID=cds.MS.gene85937.t1;Parent=MS.gene85937.t1
chr2.1 exon 1323089 1323463 1323089 ID=MS.gene85937.t1.exon2;Parent=MS.gene85937.t1
chr2.1 CDS 1323089 1323463 1323089 ID=cds.MS.gene85937.t1;Parent=MS.gene85937.t1
chr2.1 exon 1323627 1323719 1323627 ID=MS.gene85937.t1.exon3;Parent=MS.gene85937.t1
chr2.1 CDS 1323627 1323719 1323627 ID=cds.MS.gene85937.t1;Parent=MS.gene85937.t1
Gene Sequence

>MS.gene85937

ATGGAAGAATGTTTAAGTCACACCAACAACATATTTGATGAAGAGTTCCTCAAAGATATCATGAATCAGACACCACAAGATCAGTCCAGTGTCCCTATTTTCACAACTGGCCTAGTCAACAACAACTCGTCCATCAATGTCTCTCATTCAACACAACATGCTGCAGAAAAGTTAACCAGCTCATTACCAATACCAACAACTTATATACTGTCTTATGACAAATCCACTACATTGTTACCACCAACTGAACAACACCATGATTCTTTGCCTTTGTCATCATCAAAGGCTAACAACCAAGGGTCGAATTCAAAGAAGACTCGAAGCGCTTCTGAGACGCTAGATCACATAATAACAGAGAGGAACAGGAGACGCGAACTTACAAGAAAGTTCATAGAACTTTCAGCATTTATACCTGGATTGAAGAAGGTTAGTCTGTAATCTCATACCTCATCACTAGATATGTGAACCAATTCCTTTCTTAATTTTTTTTCTGGACAATTCAACTTTTATAGTAGTTATCATTGGATAGAAGCTATAAAATGACTTATCTAATGACTGTGTAGACGGACAAGGTTCATGTACTAGGAGAAGCTGTCAAGTACGTGGCACAACTTCAAGAACGTGTGAAAGAGCTAGAAGAAGACATCAAGAAGAAAGGTGCAGGATCATTGATCGCCATAACAAGATCTCATCTCCTTAATTACAATGACAGTGCCATGGGTGAAATGAACACTAAAGAATGTTATGGCCACAATGAAACATTTCCAGAGCTTGAAGTGAGGGTTCTAGGGAAGGAAGTGTTAATCAAGATTCGCTGTGGGAAGCAAAAGGAAATTGTGGTCAATATAATGTTGCAGCTTCAAATTCTTCATCTCTCCATAACAACTACCAATGTCTTGCCATTTGGAAACACTCTTAACATCACCATTATTGCTCAGGCAAGTAATTACCACAAAAAAGAAAAACAATTCATTGAAGAAAATTAACAAGCATGATTCCAACTCAAGTTTGATTCTTATCCAAATTTAATTACTATAATATAACCATATATTACAATGTAAGTTTCTATTTGTGTCTAAATTTTTGTAATTGATTCTACAGATGGGTGATAAATACAAGTTGACCGTGAAGGATCTAGTGAAAAAACTAAGAGTAGTGGCTACGTTGCAGGCATGTGATGATGTGCAACAATGA
Protein sequence

>MS.gene85937.t1

MEECLSHTNNIFDEEFLKDIMNQTPQDQSSVPIFTTGLVNNNSSINVSHSTQHAAEKLTSSLPIPTTYILSYDKSTTLLPPTEQHHDSLPLSSSKANNQGSNSKKTRSASETLDHIITERNRRRELTRKFIELSAFIPGLKKTDKVHVLGEAVKYVAQLQERVKELEEDIKKKGAGSLIAITRSHLLNYNDSAMGEMNTKECYGHNETFPELEVRVLGKEVLIKIRCGKQKEIVVNIMLQLQILHLSITTTNVLPFGNTLNITIIAQMGDKYKLTVKDLVKKLRVVATLQACDDVQQ