AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86270.t1 MTR_1g009613 98.020 101 2 0 21 121 240 340 2.76e-70 214
MS.gene86270.t1 MTR_4g094908 70.588 102 24 1 20 121 243 338 3.03e-48 157
MS.gene86270.t1 MTR_4g127040 85.000 80 12 0 21 100 223 302 4.35e-47 154
MS.gene86270.t1 MTR_5g016610 66.337 101 28 1 21 121 177 271 1.10e-45 149
MS.gene86270.t1 MTR_1g070455 79.012 81 17 0 21 101 271 351 2.47e-45 150
MS.gene86270.t1 MTR_3g108960 70.787 89 25 1 21 109 292 379 7.74e-41 139
MS.gene86270.t1 MTR_0117s0040 65.823 79 27 0 22 100 53 131 5.01e-35 121
MS.gene86270.t1 MTR_2g016770 53.488 86 39 1 18 102 1 86 7.03e-30 107
MS.gene86270.t1 MTR_2g016770 55.422 83 36 1 21 102 12 94 3.24e-29 105
MS.gene86270.t1 MTR_2g032030 54.118 85 34 1 21 100 240 324 5.77e-28 105
MS.gene86270.t1 MTR_2g032030 54.118 85 34 1 21 100 240 324 8.03e-28 106
MS.gene86270.t1 MTR_7g079040 60.000 80 27 2 21 100 137 211 4.05e-27 102
MS.gene86270.t1 MTR_8g087000 51.724 87 35 1 21 100 48 134 1.23e-26 99.4
MS.gene86270.t1 MTR_8g087000 51.724 87 35 1 21 100 47 133 1.45e-26 99.4
MS.gene86270.t1 MTR_2g083870 50.515 97 42 2 21 111 52 148 3.20e-26 98.6
MS.gene86270.t1 MTR_7g109600 57.333 75 30 1 28 100 36 110 9.47e-26 97.4
MS.gene86270.t1 MTR_8g028565 56.250 80 30 1 21 100 138 212 1.47e-24 95.9
MS.gene86270.t1 MTR_2g024350 55.263 76 31 1 40 115 5 77 6.74e-24 92.0
MS.gene86270.t1 MTR_2g024380 62.295 61 23 0 40 100 248 308 6.99e-23 92.4
MS.gene86270.t1 MTR_5g042920 56.098 82 32 2 27 105 301 381 1.26e-22 91.3
MS.gene86270.t1 MTR_5g042920 50.725 69 31 3 35 102 142 208 5.15e-14 67.4
MS.gene86270.t1 MTR_5g094430 40.000 115 55 3 4 105 178 291 1.53e-22 90.9
MS.gene86270.t1 MTR_5g094430 45.833 72 34 3 32 100 52 121 3.89e-11 58.9
MS.gene86270.t1 MTR_5g094430 40.000 115 55 3 4 105 200 313 1.73e-22 90.9
MS.gene86270.t1 MTR_5g094430 45.833 72 34 3 32 100 74 143 3.09e-11 59.3
MS.gene86270.t1 MTR_5g094430 40.000 115 55 3 4 105 312 425 2.52e-22 90.9
MS.gene86270.t1 MTR_5g094430 50.877 57 26 2 44 100 201 255 3.49e-11 59.3
MS.gene86270.t1 MTR_3g056100 39.344 122 62 4 4 115 209 328 2.60e-22 90.5
MS.gene86270.t1 MTR_3g056100 39.344 122 62 4 4 115 222 341 2.67e-22 90.5
MS.gene86270.t1 MTR_5g074400 54.762 84 34 2 25 105 399 481 3.32e-22 90.5
MS.gene86270.t1 MTR_5g074400 54.386 57 24 2 44 100 244 298 6.86e-13 63.9
MS.gene86270.t1 MTR_1g099600 48.780 82 41 1 20 100 161 242 4.13e-22 89.0
MS.gene86270.t1 MTR_3g056100 39.344 122 62 4 4 115 366 485 4.47e-22 90.5
MS.gene86270.t1 MTR_3g056100 39.344 122 62 4 4 115 353 472 4.53e-22 90.1
MS.gene86270.t1 MTR_4g082580 53.659 82 34 2 27 105 259 339 5.02e-22 89.4
MS.gene86270.t1 MTR_4g082580 50.877 57 27 1 44 100 146 201 2.09e-11 59.7
MS.gene86270.t1 MTR_4g094588 45.238 84 45 1 30 113 165 247 1.61e-21 87.4
MS.gene86270.t1 MTR_3g031220 53.659 82 37 1 23 104 345 425 2.03e-21 88.2
MS.gene86270.t1 MTR_3g031220 50.000 68 32 2 44 111 199 264 1.09e-13 66.2
MS.gene86270.t1 MTR_7g109800 48.649 74 37 1 27 100 129 201 3.23e-21 86.3
MS.gene86270.t1 MTR_7g011820 51.807 83 36 2 26 105 390 471 4.47e-21 87.4
MS.gene86270.t1 MTR_7g011820 53.731 67 28 3 35 100 219 283 1.14e-14 69.3
MS.gene86270.t1 MTR_3g009470 51.220 82 39 1 24 105 476 556 1.84e-20 85.9
MS.gene86270.t1 MTR_3g009470 54.386 57 24 2 44 100 281 335 2.79e-13 65.1
MS.gene86270.t1 MTR_7g100510 51.471 68 32 1 35 102 353 419 2.11e-20 85.1
MS.gene86270.t1 MTR_7g100510 46.512 86 43 3 35 119 180 263 2.40e-17 76.6
MS.gene86270.t1 MTR_8g098945 59.649 57 23 0 44 100 130 186 2.15e-20 83.6
MS.gene86270.t1 MTR_4g013260 51.899 79 34 2 27 102 317 394 2.36e-20 85.5
MS.gene86270.t1 MTR_4g013260 39.815 108 53 3 4 100 134 240 1.25e-14 68.9
MS.gene86270.t1 MTR_7g062220 42.056 107 47 4 3 100 80 180 3.61e-20 83.6
MS.gene86270.t1 MTR_7g079010 44.828 87 44 2 24 107 119 204 6.45e-20 81.3
MS.gene86270.t1 MTR_2g088000 46.341 82 44 0 27 108 333 414 6.55e-20 84.0
MS.gene86270.t1 MTR_5g091390 45.679 81 43 1 30 110 144 223 7.40e-20 82.8
MS.gene86270.t1 MTR_2g023930 41.414 99 56 1 6 102 266 364 8.61e-20 84.0
MS.gene86270.t1 MTR_4g007060 50.649 77 37 1 36 112 121 196 9.67e-20 82.0
MS.gene86270.t1 MTR_7g080020 47.368 95 47 2 24 116 474 567 9.74e-20 83.6
MS.gene86270.t1 MTR_7g080020 49.275 69 30 3 33 101 273 336 4.03e-13 64.7
MS.gene86270.t1 MTR_4g007060 50.649 77 37 1 36 112 155 230 1.23e-19 82.4
MS.gene86270.t1 MTR_7g080000 48.193 83 39 2 26 105 412 493 1.42e-19 83.2
MS.gene86270.t1 MTR_7g080000 53.448 58 25 2 44 101 235 290 6.43e-13 64.3
MS.gene86270.t1 MTR_7g071120 50.000 84 38 2 25 105 303 385 2.95e-19 82.0
MS.gene86270.t1 MTR_7g071120 54.386 57 24 2 44 100 167 221 5.84e-12 61.2
MS.gene86270.t1 MTR_1g013760 52.632 57 27 0 44 100 141 197 3.71e-19 80.5
MS.gene86270.t1 MTR_2g105060 50.000 66 33 0 35 100 161 226 4.38e-19 80.9
MS.gene86270.t1 MTR_2g105060 50.000 66 33 0 35 100 86 151 4.64e-19 79.7
MS.gene86270.t1 MTR_3g053330 41.176 85 50 0 27 111 235 319 4.82e-19 81.6
MS.gene86270.t1 MTR_2g033820 43.023 86 48 1 26 111 186 270 5.08e-19 81.3
MS.gene86270.t1 MTR_1g086790 44.578 83 43 2 20 100 133 214 7.04e-19 80.1
MS.gene86270.t1 MTR_4g132430 45.570 79 43 0 27 105 245 323 9.13e-19 80.9
MS.gene86270.t1 MTR_4g094412 38.235 102 44 1 18 100 190 291 1.04e-18 80.5
MS.gene86270.t1 MTR_4g094412 38.235 102 44 1 18 100 199 300 1.07e-18 80.5
MS.gene86270.t1 MTR_7g009730 41.584 101 58 1 3 103 180 279 2.05e-18 79.7
MS.gene86270.t1 MTR_4g049790 52.239 67 32 0 44 110 313 379 2.35e-18 79.7
MS.gene86270.t1 MTR_4g132430 46.053 76 41 0 27 102 111 186 2.78e-18 79.0
MS.gene86270.t1 MTR_8g067635 45.263 95 46 2 21 115 330 418 3.03e-18 79.3
MS.gene86270.t1 MTR_7g110720 45.570 79 43 0 27 105 200 278 3.30e-18 79.0
MS.gene86270.t1 MTR_3g095080 44.186 86 44 2 29 111 127 211 3.40e-18 77.0
MS.gene86270.t1 MTR_8g069935 46.479 71 38 0 44 114 332 402 3.81e-18 79.0
MS.gene86270.t1 MTR_7g110720 45.570 79 43 0 27 105 173 251 4.22e-18 78.6
MS.gene86270.t1 MTR_3g106060 47.222 72 38 0 29 100 124 195 4.38e-18 77.8
MS.gene86270.t1 MTR_3g095080 44.186 86 44 2 29 111 151 235 6.09e-18 76.6
MS.gene86270.t1 MTR_5g043880 47.297 74 38 1 27 100 108 180 6.44e-18 77.0
MS.gene86270.t1 MTR_8g007270 45.783 83 41 2 22 101 130 211 9.37e-18 75.9
MS.gene86270.t1 MTR_8g092140 42.529 87 45 2 29 111 142 227 1.11e-17 75.9
MS.gene86270.t1 MTR_4g122530 39.773 88 52 1 27 114 192 278 1.36e-17 77.4
MS.gene86270.t1 MTR_1g015140 49.296 71 35 1 30 100 89 158 1.82e-17 73.6
MS.gene86270.t1 MTR_4g107970 52.542 59 28 0 44 102 179 237 2.16e-17 77.0
MS.gene86270.t1 MTR_4g107970 52.542 59 28 0 44 102 256 314 2.75e-17 76.6
MS.gene86270.t1 MTR_4g130900 56.140 57 24 1 44 100 360 415 4.47e-17 75.9
MS.gene86270.t1 MTR_1g077780 39.604 101 60 1 6 106 25 124 6.74e-17 72.0
MS.gene86270.t1 MTR_3g090860 50.000 74 28 2 44 115 134 200 6.96e-17 75.1
MS.gene86270.t1 MTR_5g067680 45.783 83 41 3 20 98 177 259 8.55e-17 74.7
MS.gene86270.t1 MTR_3g104750 46.154 78 38 2 26 100 84 160 9.35e-17 72.0
MS.gene86270.t1 MTR_3g095040 45.000 80 43 1 21 100 96 174 9.44e-17 72.8
MS.gene86270.t1 MTR_2g045360 48.529 68 35 0 44 111 212 279 9.60e-17 75.1
MS.gene86270.t1 MTR_8g092010 52.381 63 29 1 40 102 105 166 1.84e-16 71.6
MS.gene86270.t1 MTR_1g013790 46.774 62 33 0 41 102 99 160 1.92e-16 72.8
MS.gene86270.t1 MTR_8g067650 43.750 96 50 2 21 115 316 408 2.32e-16 73.9
MS.gene86270.t1 MTR_5g097490 54.386 57 25 1 44 100 253 308 4.29e-16 73.2
MS.gene86270.t1 MTR_5g018380 60.345 58 20 2 43 100 123 177 5.06e-16 70.5
MS.gene86270.t1 MTR_7g028415 47.692 65 33 1 39 103 89 152 6.41e-16 70.1
MS.gene86270.t1 MTR_7g028710 47.692 65 33 1 39 103 89 152 6.41e-16 70.1
MS.gene86270.t1 MTR_7g117200 51.562 64 29 1 44 105 119 182 8.24e-16 72.0
MS.gene86270.t1 MTR_1g078260 58.065 62 24 2 40 100 244 304 1.30e-15 72.0
MS.gene86270.t1 MTR_4g049760 49.254 67 34 0 44 110 291 357 1.76e-15 71.6
MS.gene86270.t1 MTR_6g086555 49.254 67 32 2 44 109 207 272 2.07e-15 71.2
MS.gene86270.t1 MTR_8g099350 49.123 57 27 1 44 98 133 189 2.96e-14 67.8
MS.gene86270.t1 MTR_6g053200 42.188 64 37 0 37 100 324 387 5.83e-14 67.0
MS.gene86270.t1 MTR_3g031220 50.000 68 32 2 44 111 199 264 8.80e-14 66.6
MS.gene86270.t1 MTR_8g096730 38.235 68 41 1 40 107 67 133 1.84e-13 63.2
MS.gene86270.t1 MTR_3g009470 54.386 57 24 2 44 100 281 335 3.77e-13 64.7
MS.gene86270.t1 MTR_8g027860 40.476 84 47 2 21 101 113 196 3.97e-13 64.7
MS.gene86270.t1 MTR_2g075750 44.776 67 35 1 44 108 29 95 2.23e-12 60.8
MS.gene86270.t1 MTR_2g075610 49.123 57 27 1 44 98 30 86 3.39e-12 60.5
MS.gene86270.t1 MTR_2g075700 32.727 110 63 4 22 121 123 231 7.29e-12 60.8
MS.gene86270.t1 MTR_4g047580 40.964 83 47 1 26 108 266 346 1.42e-11 60.5
MS.gene86270.t1 MTR_2g075680 37.333 75 45 1 26 98 131 205 2.14e-11 59.7
MS.gene86270.t1 MTR_8g087000 60.526 38 15 0 63 100 35 72 2.70e-11 58.2
MS.gene86270.t1 MTR_5g067700 41.558 77 40 2 24 98 90 163 3.34e-11 58.5
MS.gene86270.t1 MTR_5g073620 44.068 59 31 1 42 98 671 729 5.08e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86270.t1 AT4G31550 82.524 103 15 2 20 120 223 324 3.68e-56 177
MS.gene86270.t1 AT4G31550 83.333 102 14 2 21 120 223 323 6.78e-56 176
MS.gene86270.t1 AT2G24570 78.431 102 20 2 20 120 220 320 1.61e-52 168
MS.gene86270.t1 AT4G24240 79.268 82 17 0 21 102 259 340 8.03e-45 149
MS.gene86270.t1 AT2G30590 80.000 80 16 0 21 100 291 370 8.17e-45 149
MS.gene86270.t1 AT3G04670 80.247 81 16 0 21 101 240 320 1.17e-44 148
MS.gene86270.t1 AT5G28650 79.012 81 17 0 21 101 240 320 2.67e-44 147
MS.gene86270.t1 AT2G23320 74.390 82 21 0 21 102 218 299 3.31e-44 146
MS.gene86270.t1 AT1G29280 56.322 87 32 2 20 100 45 131 8.70e-29 105
MS.gene86270.t1 AT2G34830 54.118 85 34 2 21 100 188 272 1.86e-27 104
MS.gene86270.t1 AT2G34830 54.118 85 34 2 21 100 197 281 1.93e-27 104
MS.gene86270.t1 AT1G30650 52.941 85 35 2 21 100 190 274 1.01e-26 102
MS.gene86270.t1 AT3G58710 54.023 87 34 2 20 100 42 128 1.82e-25 97.1
MS.gene86270.t1 AT3G58710 54.651 86 33 2 21 100 42 127 3.26e-25 96.3
MS.gene86270.t1 AT4G01250 70.175 57 17 0 44 100 129 185 2.18e-24 94.7
MS.gene86270.t1 AT5G52830 55.000 80 32 1 21 100 147 222 2.63e-24 95.1
MS.gene86270.t1 AT2G38470 56.098 82 32 2 27 105 343 423 7.34e-23 92.4
MS.gene86270.t1 AT2G38470 54.386 57 24 2 44 100 185 239 5.66e-13 64.3
MS.gene86270.t1 AT2G03340 54.878 82 33 2 27 105 396 476 2.05e-22 91.3
MS.gene86270.t1 AT2G03340 50.746 67 30 3 37 102 243 307 6.70e-15 69.7
MS.gene86270.t1 AT4G31550 90.698 43 4 0 21 63 223 265 3.95e-22 88.2
MS.gene86270.t1 AT5G45050 48.750 80 37 1 21 100 1134 1209 1.15e-21 89.4
MS.gene86270.t1 AT5G45050 48.750 80 37 1 21 100 1023 1098 1.16e-21 89.4
MS.gene86270.t1 AT5G45050 48.750 80 37 1 21 100 1162 1237 1.16e-21 89.4
MS.gene86270.t1 AT1G29860 48.148 81 41 1 27 107 120 199 1.59e-21 86.7
MS.gene86270.t1 AT4G18170 50.588 85 39 2 20 102 147 230 2.85e-21 86.7
MS.gene86270.t1 AT2G04880 60.317 63 24 1 40 102 304 365 2.96e-21 87.8
MS.gene86270.t1 AT2G04880 60.317 63 24 1 40 102 280 341 3.02e-21 87.8
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 157 263 3.32e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 36 104 4.26e-11 58.9
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 157 263 3.32e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 36 104 4.26e-11 58.9
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 157 263 3.32e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 36 104 4.26e-11 58.9
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 157 263 3.32e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 36 104 4.26e-11 58.9
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 261 367 6.05e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 140 208 3.36e-11 59.3
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 333 439 6.47e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 212 280 3.05e-11 59.3
MS.gene86270.t1 AT4G26640 42.593 108 49 3 7 102 293 399 6.56e-21 87.0
MS.gene86270.t1 AT4G26640 43.662 71 38 2 44 114 172 240 2.85e-11 59.7
MS.gene86270.t1 AT1G13960 53.165 79 33 2 27 102 237 314 6.61e-21 86.3
MS.gene86270.t1 AT1G13960 53.226 62 26 3 40 100 72 131 1.43e-13 65.9
MS.gene86270.t1 AT4G23550 48.750 80 37 1 23 102 124 199 7.07e-21 85.5
MS.gene86270.t1 AT5G56270 47.368 95 49 1 11 105 455 548 7.41e-21 87.0
MS.gene86270.t1 AT5G56270 52.632 57 25 2 44 100 274 328 6.82e-12 61.2
MS.gene86270.t1 AT1G13960 53.165 79 33 2 27 102 390 467 9.02e-21 86.7
MS.gene86270.t1 AT1G13960 54.386 57 24 2 44 100 230 284 1.06e-13 66.6
MS.gene86270.t1 AT3G04670 80.851 47 9 0 21 67 240 286 9.15e-21 85.1
MS.gene86270.t1 AT5G07100 56.164 73 31 1 30 102 128 199 1.13e-20 83.2
MS.gene86270.t1 AT5G07100 40.449 89 38 3 35 112 19 103 5.69e-12 60.5
MS.gene86270.t1 AT5G07100 56.164 73 31 1 30 102 128 199 1.13e-20 83.2
MS.gene86270.t1 AT5G07100 40.449 89 38 3 35 112 19 103 5.69e-12 60.5
MS.gene86270.t1 AT5G07100 56.164 73 31 1 30 102 128 199 1.13e-20 83.2
MS.gene86270.t1 AT5G07100 40.449 89 38 3 35 112 19 103 5.69e-12 60.5
MS.gene86270.t1 AT5G07100 56.164 73 31 1 30 102 128 199 1.13e-20 83.2
MS.gene86270.t1 AT5G07100 40.449 89 38 3 35 112 19 103 5.69e-12 60.5
MS.gene86270.t1 AT4G31800 42.045 88 51 0 28 115 96 183 1.92e-20 83.2
MS.gene86270.t1 AT4G31800 42.045 88 51 0 28 115 161 248 2.88e-20 84.0
MS.gene86270.t1 AT5G49520 50.000 74 36 1 27 100 205 277 3.39e-20 84.7
MS.gene86270.t1 AT5G07100 56.164 73 31 1 30 102 221 292 4.22e-20 83.6
MS.gene86270.t1 AT5G07100 39.506 81 45 2 35 115 112 188 4.91e-12 61.2
MS.gene86270.t1 AT5G26170 50.000 72 35 1 30 101 100 170 5.42e-20 80.5
MS.gene86270.t1 AT3G01080 53.165 79 33 2 27 102 325 402 7.12e-20 84.0
MS.gene86270.t1 AT3G01080 57.895 57 22 2 44 100 206 260 1.11e-15 72.0
MS.gene86270.t1 AT3G01080 53.165 79 33 2 27 102 287 364 7.22e-20 84.0
MS.gene86270.t1 AT3G01080 56.452 62 24 3 40 100 163 222 1.25e-15 72.0
MS.gene86270.t1 AT2G37260 47.561 82 42 1 21 102 247 327 1.34e-19 82.4
MS.gene86270.t1 AT2G37260 55.172 58 24 2 44 101 86 141 1.32e-13 65.9
MS.gene86270.t1 AT4G26440 50.000 82 40 1 24 105 353 433 1.37e-19 83.2
MS.gene86270.t1 AT4G26440 53.448 58 25 2 44 101 179 234 1.13e-12 63.5
MS.gene86270.t1 AT2G37260 47.561 82 42 1 21 102 245 325 1.39e-19 82.4
MS.gene86270.t1 AT2G37260 55.172 58 24 2 44 101 84 139 1.32e-13 65.9
MS.gene86270.t1 AT4G39410 43.011 93 49 2 21 110 198 289 1.40e-19 82.0
MS.gene86270.t1 AT2G37260 47.561 82 42 1 21 102 327 407 1.95e-19 82.4
MS.gene86270.t1 AT2G37260 55.172 58 24 2 44 101 166 221 9.94e-14 66.6
MS.gene86270.t1 AT2G40740 48.684 76 36 2 26 98 155 230 2.05e-19 81.3
MS.gene86270.t1 AT2G40740 48.684 76 36 2 26 98 164 239 2.09e-19 81.6
MS.gene86270.t1 AT5G46350 50.685 73 35 1 30 102 170 241 2.52e-19 81.6
MS.gene86270.t1 AT4G04450 45.882 85 46 0 27 111 182 266 2.88e-19 82.0
MS.gene86270.t1 AT1G69310 45.122 82 41 2 22 100 123 203 3.23e-19 80.9
MS.gene86270.t1 AT1G69310 45.122 82 41 2 22 100 123 203 3.23e-19 80.9
MS.gene86270.t1 AT1G69310 45.122 82 41 2 22 100 123 203 3.23e-19 80.9
MS.gene86270.t1 AT4G24240 81.395 43 8 0 21 63 259 301 3.29e-19 80.9
MS.gene86270.t1 AT4G04450 45.882 85 46 0 27 111 276 360 3.31e-19 82.0
MS.gene86270.t1 AT2G47260 46.341 82 41 2 21 100 150 230 3.44e-19 81.3
MS.gene86270.t1 AT3G62340 46.341 82 43 1 19 100 94 174 9.12e-19 79.3
MS.gene86270.t1 AT1G55600 45.455 77 41 1 24 100 288 363 1.97e-18 79.7
MS.gene86270.t1 AT1G62300 46.053 76 41 0 27 102 296 371 3.59e-18 79.3
MS.gene86270.t1 AT5G15130 43.956 91 50 1 21 111 206 295 3.87e-18 79.0
MS.gene86270.t1 AT4G22070 46.053 76 41 0 27 102 281 356 4.60e-18 79.0
MS.gene86270.t1 AT4G22070 46.053 76 41 0 27 102 281 356 4.60e-18 79.0
MS.gene86270.t1 AT4G22070 46.053 76 41 0 27 102 281 356 4.60e-18 79.0
MS.gene86270.t1 AT4G22070 46.053 76 41 0 27 102 281 356 4.60e-18 79.0
MS.gene86270.t1 AT5G15130 43.956 91 50 1 21 111 164 253 4.65e-18 79.0
MS.gene86270.t1 AT1G68150 45.679 81 41 1 44 121 236 316 7.18e-18 77.8
MS.gene86270.t1 AT5G41570 39.394 99 56 2 26 121 78 175 7.31e-18 75.1
MS.gene86270.t1 AT1G64000 40.449 89 49 2 22 107 90 177 7.52e-18 75.5
MS.gene86270.t1 AT5G45260 45.679 81 36 2 22 100 1193 1267 8.02e-18 78.2
MS.gene86270.t1 AT2G44745 47.619 84 38 3 22 100 119 201 8.45e-18 75.9
MS.gene86270.t1 AT1G80840 41.333 75 44 0 35 109 138 212 1.00e-17 77.0
MS.gene86270.t1 AT1G18860 46.914 81 42 1 22 102 219 298 1.37e-17 77.4
MS.gene86270.t1 AT2G23320 72.093 43 12 0 21 63 218 260 1.58e-17 75.9
MS.gene86270.t1 AT2G46130 40.206 97 54 2 27 120 11 106 1.71e-17 72.4
MS.gene86270.t1 AT2G25000 44.595 74 41 0 28 101 88 161 1.82e-17 75.1
MS.gene86270.t1 AT2G25000 44.595 74 41 0 28 101 88 161 1.82e-17 75.1
MS.gene86270.t1 AT2G21900 54.386 57 25 1 44 100 110 165 2.27e-17 74.3
MS.gene86270.t1 AT2G25000 44.595 74 41 0 28 101 110 183 3.13e-17 75.1
MS.gene86270.t1 AT4G01720 46.053 76 41 0 27 102 223 298 3.19e-17 76.6
MS.gene86270.t1 AT2G25000 44.595 74 41 0 28 101 131 204 3.96e-17 75.1
MS.gene86270.t1 AT4G30935 50.847 59 28 1 44 102 332 389 9.87e-17 75.1
MS.gene86270.t1 AT5G13080 44.928 69 37 1 39 107 63 130 5.36e-16 69.7
MS.gene86270.t1 AT3G01080 57.895 57 22 2 44 100 206 260 8.47e-16 72.0
MS.gene86270.t1 AT5G43290 52.055 73 31 2 28 100 102 170 1.08e-15 71.2
MS.gene86270.t1 AT2G30250 42.353 85 45 2 25 106 307 390 1.66e-15 71.6
MS.gene86270.t1 AT3G01970 46.875 64 33 1 39 102 61 123 2.92e-15 67.8
MS.gene86270.t1 AT1G69310 42.683 82 39 3 22 100 123 199 7.80e-15 68.9
MS.gene86270.t1 AT5G64810 47.541 61 31 1 40 100 107 166 1.41e-14 67.0
MS.gene86270.t1 AT1G69810 39.326 89 45 2 25 112 135 215 2.08e-14 68.2
MS.gene86270.t1 AT1G69810 44.286 70 38 1 44 112 204 273 3.44e-14 67.8
MS.gene86270.t1 AT2G46130 39.286 84 43 2 27 107 11 89 3.01e-13 61.6
MS.gene86270.t1 AT4G11070 50.877 57 26 1 44 98 142 198 3.14e-13 64.7
MS.gene86270.t1 AT4G11070 50.877 57 26 1 44 98 110 166 3.24e-13 64.3
MS.gene86270.t1 AT1G66560 49.153 59 28 1 42 98 102 160 4.03e-13 63.9
MS.gene86270.t1 AT4G23810 39.326 89 48 3 16 98 127 215 1.68e-12 62.8
MS.gene86270.t1 AT2G46400 45.614 57 29 1 44 98 105 161 2.58e-12 62.0
MS.gene86270.t1 AT5G24110 45.614 57 29 1 44 98 114 170 5.79e-12 61.2
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.25e-11 60.1
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.25e-11 60.1
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.28e-11 60.1
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.32e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.32e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.33e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.33e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.42e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 402 456 2.49e-11 59.7
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 2.49e-11 59.7
MS.gene86270.t1 AT5G22570 49.123 57 27 1 44 98 111 167 2.86e-11 59.3
MS.gene86270.t1 AT4G12020 49.123 57 27 2 44 100 469 523 3.37e-11 59.3
MS.gene86270.t1 AT1G66550 44.068 59 31 1 42 98 107 165 4.85e-11 58.2
MS.gene86270.t1 AT1G66550 44.068 59 31 1 42 98 102 160 4.97e-11 58.2
MS.gene86270.t1 AT5G01900 45.000 60 31 1 41 98 108 167 6.36e-11 58.2
MS.gene86270.t1 AT2G40750 40.244 82 40 3 19 98 135 209 7.60e-11 58.2
MS.gene86270.t1 AT3G56400 41.667 60 33 1 41 98 118 177 9.73e-11 57.8

Find 29 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACGTGTTTCCTTGC+TGG 0.172147 1.3:+10678523 None:intergenic
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1.3:-10678419 MS.gene86270:CDS
AAGAAACTTGTTACTTCTGT+TGG 0.378349 1.3:+10678829 None:intergenic
GCTCCACGTGTTTCCTTGCT+GGG 0.389925 1.3:+10678524 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 1.3:+10678668 None:intergenic
GCGATGCAGGAGAACGCATC+CGG 0.423327 1.3:-10678433 MS.gene86270:CDS
TACTATTCAAGCTGCGATGC+AGG 0.438847 1.3:-10678446 MS.gene86270:CDS
AGAAACTTGTTACTTCTGTT+GGG 0.439258 1.3:+10678830 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.449763 1.3:+10678730 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1.3:+10678487 None:intergenic
GGAGAACGCATCCGGGATTG+TGG 0.492453 1.3:-10678425 MS.gene86270:CDS
GAGTACTCGTGGCGGAAATA+CGG 0.498267 1.3:-10678713 MS.gene86270:CDS
ATGCTGATTGTAACGTATGA+AGG 0.520363 1.3:-10678481 MS.gene86270:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1.3:-10678424 MS.gene86270:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1.3:+10678683 None:intergenic
ATACGGTCAGAAACCGATCA+AGG 0.544971 1.3:-10678696 MS.gene86270:CDS
CGATGCAGGAGAACGCATCC+GGG 0.559528 1.3:-10678432 MS.gene86270:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1.3:+10678414 None:intergenic
TTCCGCCACGAGTACTCGTC+CGG 0.561775 1.3:+10678719 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1.3:-10678771 MS.gene86270:CDS
GCTGTCTTTGAACTTATCGC+CGG 0.599022 1.3:+10678752 None:intergenic
TACGGTCAGAAACCGATCAA+GGG 0.612371 1.3:-10678695 MS.gene86270:CDS
CGCCACGAGTACTCGTCCGG+TGG 0.638685 1.3:+10678722 None:intergenic
CTGTAAGAGAGTGCCCAGCA+AGG 0.647498 1.3:-10678537 MS.gene86270:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1.3:-10678679 MS.gene86270:intron
AAAGACAGCCGATATACCAC+CGG 0.663684 1.3:-10678738 MS.gene86270:CDS
TACCACCGGACGAGTACTCG+TGG 0.691070 1.3:-10678724 MS.gene86270:CDS
GTGCCCAGCAAGGAAACACG+TGG 0.693956 1.3:-10678527 MS.gene86270:CDS
CACCGGACGAGTACTCGTGG+CGG 0.727156 1.3:-10678721 MS.gene86270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAGTCAACATAATTAA+CGG + chr1.3:10678625-10678644 None:intergenic 15.0%
!!! TTTTTTTACCAGAAAAAATA+GGG - chr1.3:10678452-10678471 MS.gene86270:CDS 15.0%
!!! TTTTTTTTACCAGAAAAAAT+AGG - chr1.3:10678451-10678470 MS.gene86270:CDS 15.0%
!!! TTATTCTTTCTTTTAATCAG+AGG - chr1.3:10678670-10678689 MS.gene86270:intron 20.0%
AAAGTCAACATAATTAACGG+TGG + chr1.3:10678622-10678641 None:intergenic 30.0%
!! AAGAAACTTGTTACTTCTGT+TGG + chr1.3:10678421-10678440 None:intergenic 30.0%
!! AGAAACTTGTTACTTCTGTT+GGG + chr1.3:10678420-10678439 None:intergenic 30.0%
ACATAATTAACGGTGGAGAT+CGG + chr1.3:10678615-10678634 None:intergenic 35.0%
ATTGTGTATAACTCTTACCG+TGG + chr1.3:10678588-10678607 None:intergenic 35.0%
TATAACTCTTACCGTGGATA+TGG + chr1.3:10678582-10678601 None:intergenic 35.0%
! ATGCTGATTGTAACGTATGA+AGG - chr1.3:10678766-10678785 MS.gene86270:CDS 35.0%
AAATACCAAACCCACAATCC+CGG + chr1.3:10678836-10678855 None:intergenic 40.0%
CCAGAAAAAATAGGGTGAAG+AGG - chr1.3:10678460-10678479 MS.gene86270:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG + chr1.3:10678763-10678782 None:intergenic 40.0%
!!! CCTCTTCACCCTATTTTTTC+TGG + chr1.3:10678463-10678482 None:intergenic 40.0%
AAAGACAGCCGATATACCAC+CGG - chr1.3:10678509-10678528 MS.gene86270:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG - chr1.3:10678551-10678570 MS.gene86270:CDS 45.0%
GCTGTCTTTGAACTTATCGC+CGG + chr1.3:10678498-10678517 None:intergenic 45.0%
GGATATGGTGATCCCTTGAT+CGG + chr1.3:10678567-10678586 None:intergenic 45.0%
TACGGTCAGAAACCGATCAA+GGG - chr1.3:10678552-10678571 MS.gene86270:CDS 45.0%
TACTATTCAAGCTGCGATGC+AGG - chr1.3:10678801-10678820 MS.gene86270:CDS 45.0%
TCAAGGGATCACCATATCCA+CGG - chr1.3:10678568-10678587 MS.gene86270:intron 45.0%
GTACTCGTCCGGTGGTATAT+CGG + chr1.3:10678520-10678539 None:intergenic 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG - chr1.3:10678476-10678495 MS.gene86270:CDS 50.0%
! GAGTACTCGTGGCGGAAATA+CGG - chr1.3:10678534-10678553 MS.gene86270:CDS 50.0%
GAGAACGCATCCGGGATTGT+GGG - chr1.3:10678823-10678842 MS.gene86270:CDS 55.0%
GCTCCACGTGTTTCCTTGCT+GGG + chr1.3:10678726-10678745 None:intergenic 55.0%
!! CTGTAAGAGAGTGCCCAGCA+AGG - chr1.3:10678710-10678729 MS.gene86270:CDS 55.0%
CGATGCAGGAGAACGCATCC+GGG - chr1.3:10678815-10678834 MS.gene86270:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG - chr1.3:10678828-10678847 MS.gene86270:CDS 60.0%
CGCTCCACGTGTTTCCTTGC+TGG + chr1.3:10678727-10678746 None:intergenic 60.0%
GCGATGCAGGAGAACGCATC+CGG - chr1.3:10678814-10678833 MS.gene86270:CDS 60.0%
GGAGAACGCATCCGGGATTG+TGG - chr1.3:10678822-10678841 MS.gene86270:CDS 60.0%
GTGCCCAGCAAGGAAACACG+TGG - chr1.3:10678720-10678739 MS.gene86270:CDS 60.0%
TACCACCGGACGAGTACTCG+TGG - chr1.3:10678523-10678542 MS.gene86270:CDS 60.0%
TTCCGCCACGAGTACTCGTC+CGG + chr1.3:10678531-10678550 None:intergenic 60.0%
CACCGGACGAGTACTCGTGG+CGG - chr1.3:10678526-10678545 MS.gene86270:CDS 65.0%
CGCCACGAGTACTCGTCCGG+TGG + chr1.3:10678528-10678547 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 10678402 10678867 10678402 ID=MS.gene86270
chr1.3 mRNA 10678402 10678867 10678402 ID=MS.gene86270.t1;Parent=MS.gene86270
chr1.3 exon 10678680 10678867 10678680 ID=MS.gene86270.t1.exon1;Parent=MS.gene86270.t1
chr1.3 CDS 10678680 10678867 10678680 ID=cds.MS.gene86270.t1;Parent=MS.gene86270.t1
chr1.3 exon 10678402 10678579 10678402 ID=MS.gene86270.t1.exon2;Parent=MS.gene86270.t1
chr1.3 CDS 10678402 10678579 10678402 ID=cds.MS.gene86270.t1;Parent=MS.gene86270.t1
Gene Sequence

>MS.gene86270

ATGATTATACTAATACCCAACAGAAGTAACAAGTTTCTTGAATTTGATTTTTTTTTTACCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACAGCCGATATACCACCGGACGAGTACTCGTGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGGTAAGAGTTATACACAATCAATCCGATCTCCACCGTTAATTATGTTGACTTTTATTAAAGACTTGTTTTCTAATGTTGATTTATTCTTTCTTTTAATCAGAGGCTATTACAAGTGTAGCACTGTAAGAGAGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>MS.gene86270.t1

MIILIPNRSNKFLEFDFFFTRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRECPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST