AlfalfaGEDB | MS.gene86328

M. sativa cultivar XinJiangDaYe / MS.gene86328

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030247 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07645.18 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86328.t1	RHN76863.1	67.6	754	100	3	9	618	8	761	3.70E-283	983.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86328.t1	Q9LMN7	50.7	544	232	14	90	618	211	733	7.6e-136	485.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86328.t1	A0A396JKP2	67.6	754	100	3	9	618	8	761	2.6e-283	983.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86328.t1	MTR_1g010220	80.919	566	59	4	54	581	155	709	0.0	919
MS.gene86328.t1	MTR_1g010220	77.465	71	13	1	6	73	1	71	1.73e-28	121
MS.gene86328.t1	MTR_1g010260	65.936	593	126	8	77	618	164	731	0.0	751
MS.gene86328.t1	MTR_1g027570	63.051	590	173	7	68	618	161	744	0.0	750
MS.gene86328.t1	MTR_1g027570	44.118	68	37	1	9	75	15	82	1.41e-12	71.2
MS.gene86328.t1	MTR_1g027580	61.301	615	191	8	43	618	138	744	0.0	739
MS.gene86328.t1	MTR_1g027580	40.260	77	43	1	2	75	6	82	3.68e-13	73.2
MS.gene86328.t1	MTR_1g027600	62.950	583	171	7	75	618	171	747	0.0	735
MS.gene86328.t1	MTR_1g027600	38.961	77	43	1	3	75	7	83	2.39e-12	70.5
MS.gene86328.t1	MTR_1g027660	60.813	615	189	10	43	618	120	721	0.0	727

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86328.t1	AT1G21230	50.647	541	237	13	90	618	211	733	7.80e-169	499
MS.gene86328.t1	AT1G21240	49.808	522	243	10	100	618	236	741	5.18e-166	492
MS.gene86328.t1	AT1G21250	46.488	598	247	15	75	618	157	735	6.10e-166	491
MS.gene86328.t1	AT1G21270	46.037	593	256	13	75	618	155	732	1.21e-163	486
MS.gene86328.t1	AT1G21210	48.876	534	240	14	100	618	223	738	3.29e-157	469
MS.gene86328.t1	AT1G16130	48.238	454	214	7	112	561	254	690	5.28e-137	417
MS.gene86328.t1	AT1G69730	47.973	444	197	9	128	562	305	723	5.21e-130	400
MS.gene86328.t1	AT1G79670	48.858	438	201	7	130	561	238	658	2.04e-129	397
MS.gene86328.t1	AT1G16120	49.292	424	199	5	140	561	294	703	9.71e-129	395
MS.gene86328.t1	AT1G79670	48.858	438	201	7	130	561	275	695	1.03e-128	396

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Find 130 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTATATAGCTT+TGG	0.415407	1.3:+9916132	MS.gene86328:CDS
AAACAAACAAGAGATCAAGG+AGG	0.753887	1.3:+9916302	MS.gene86328:CDS
AAATTCTTTAGGCAGAATGG+AGG	0.636740	1.3:+9915472	MS.gene86328:CDS
AACAACTCCAAATTAATCTA+TGG	0.360932	1.3:+9914112	MS.gene86328:CDS
AACCAACACTGCAAAAGTGT+CGG	0.622990	1.3:+9915996	MS.gene86328:CDS
AACGGCCCAATTAACAACCA+AGG	0.636564	1.3:-9914620	None:intergenic
AAGACCAAGCATGAAGGAAG+TGG	0.554397	1.3:+9916368	MS.gene86328:CDS
AAGCATGAAGGAAGTGGCTA+TGG	0.511787	1.3:+9916374	MS.gene86328:CDS
AAGTGTTTGGAAGGATTTGA+AGG	0.450736	1.3:+9914745	MS.gene86328:CDS
AAGTTATTCAAGATGGCATG+TGG	0.559530	1.3:+9916271	MS.gene86328:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGCAAAAACAAAAAGAG+TGG	-	chr1.3:9914825-9914844	None:intergenic	30.0%
ACAAACTCATAAACCAACAA+AGG	-	chr1.3:9915799-9915818	None:intergenic	30.0%
AGAAAACAAACAAGAGATCA+AGG	+	chr1.3:9916299-9916318	MS.gene86328:CDS	30.0%
AGTGATAACATTCTCTTAGA+TGG	+	chr1.3:9915973-9915992	MS.gene86328:CDS	30.0%
ATATATTTGAATACAGGAGC+AGG	+	chr1.3:9915370-9915389	MS.gene86328:intron	30.0%
ATGATAATTGGGAATAACAC+AGG	+	chr1.3:9914406-9914425	MS.gene86328:intron	30.0%
ATTGAATTTCCTATGCCAAA+TGG	-	chr1.3:9914037-9914056	None:intergenic	30.0%
GAAAACAAATTCATAACCGT+TGG	+	chr1.3:9914292-9914311	MS.gene86328:intron	30.0%
GTAAAAGTTCCATTTCCATT+TGG	+	chr1.3:9914019-9914038	MS.gene86328:CDS	30.0%
TACTAAGATACTAATGACCA+TGG	+	chr1.3:9915080-9915099	MS.gene86328:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	9913911	9916587	9913911	ID=MS.gene86328
chr1.3	mRNA	9913911	9916587	9913911	ID=MS.gene86328.t1;Parent=MS.gene86328
chr1.3	exon	9913911	9914133	9913911	ID=MS.gene86328.t1.exon1;Parent=MS.gene86328.t1
chr1.3	CDS	9913911	9914133	9913911	ID=cds.MS.gene86328.t1;Parent=MS.gene86328.t1
chr1.3	exon	9914428	9914472	9914428	ID=MS.gene86328.t1.exon2;Parent=MS.gene86328.t1
chr1.3	CDS	9914428	9914472	9914428	ID=cds.MS.gene86328.t1;Parent=MS.gene86328.t1
chr1.3	exon	9914587	9914796	9914587	ID=MS.gene86328.t1.exon3;Parent=MS.gene86328.t1
chr1.3	CDS	9914587	9914796	9914587	ID=cds.MS.gene86328.t1;Parent=MS.gene86328.t1
chr1.3	exon	9915119	9915295	9915119	ID=MS.gene86328.t1.exon4;Parent=MS.gene86328.t1
chr1.3	CDS	9915119	9915295	9915119	ID=cds.MS.gene86328.t1;Parent=MS.gene86328.t1
chr1.3	exon	9915386	9916587	9915386	ID=MS.gene86328.t1.exon5;Parent=MS.gene86328.t1
chr1.3	CDS	9915386	9916587	9915386	ID=cds.MS.gene86328.t1;Parent=MS.gene86328.t1

Gene Sequence

>MS.gene86328

ATGAAACTAAAGGCAATGCATCCATTAATAATGGTTTCATTAGCACTTTTAGTAGAAGCAGTTGCAGCTGAACAAGTTCTACCTGGCTGCAATTACACTTGTGGAGGTGTAAAAGTTCCATTTCCATTTGGCATAGGAAATTCAATAGCACAAGATCATACACCATGTTACATGGATTCTAAATTCAATCTTACTTGTACAAACAACTCCAAATTAATCTATGGTAAGAATATACAAGTCCTAAACATAAATCCGCAAGGTCAACTGGAAATGATTTTTTTGGTCTCACCTCTCTGTATTAATAGCAGTAGTAATAATAATAATACCAAAAAAGCGAATATAGCTTCTCTCAGAGTTTCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTTGGTTGCGACAGTTATGGATATCTCAACAGTAATTACAAGGGTGCCACATATTCAACCGGGTGCTTAACAAGATGTTATGATTTTGATCCTAAAATGATAATTGGGAATAACACAGGAAAATGCACGGGATTAGGTTGTTGCCAAGTAGATATTCCTTCTGGTATGAAAAATATCACTATACAAACATTCAAATTCCCAACTTCTACAATATCTGAGGATCGTTATTGTGGCTCTTCCTTCATTGCAAAACAAGGATCCTATAATTTTTCTGTAGAACATATAAAGGAACTACCTTATGAAACTTTCCCCTTGGTTGTTAATTGGGCCGTTACAAATGAATCGTGTCAAATAGCTCAAACTACAAATAACTATGCCTGCAAGGAAAATAGTGAATGTGTTGATAAAGATTCAGATTATGACGGTTACAGATGCAAGTGTTTGGAAGGATTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGGTAACAAACAAAGCATAATATCGTACCACTCTTTTTGTTTTTGCAGTTTAATTAATTGATTGCGCTTCATATTTTCAATGTTTTATTGAATTTGGTTCCTCTTAATTGAGTCATTTTAAAAAGTGGTTGACTGTAGAAAGTTGACATAAGAGTGGTTGATTACACTAAATTTTTGGGTAGTGATTCATCGGAATGAATTGAGATTCATCAGAGTGAATCTAGACCATAATGATTATCAAGATTTAAGATGAAAATACACACTAGAGATATTGAATCACATGTATACTAAGATACTAATGACCATGGTTTTATGGTTTCTCAGACATTGACGAATGTGCAACAAAAACTCATGTATGCGAAAATAAAGAAAATTGTAGAAACACTTTTGGGAATCACACTTGTTTCTGTCCCAAGGGGCAAACCGGAGATGGAACAAAGGAAGGAGGTTGCCAACCAGTTCATCGAAATGCAACTTCAATAGTACTACCTACTGTCCTTGGTAAGCAACTAAGCGTGCCTAATTGTATTTCACGTTCATTTTTTTTTTTTATTATCAAATCTTATGAGTGTTCAATATATTTGAATACAGGAGCAGGAACAGTATTTATTATTCTATTTGTGGGGATAGTTTTCTTCTTAATATACCAAAAAAGGAAATTTACGAAATTGAAAGAGAAATTCTTTAGGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTCATCAAAGAAAAGATTCGTCTCAAATAGCACACATTTTCAAAGAAAATGAACTAAGGAAAGCCACTGACAACTTTGACGAGACCTTAATCATAGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGGAAATTAGATGATAATAGAATTGTTGCTATCAAAAAATCCAAAACAATAGACGAAAGCCAAATTGAACAATTCATTAATGAGGTGGATGTTGTCTCTCAAATAAATCACAGGAATGTGGTCAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTAGCAATGGTACTCTTTCTGAATTTATACACACACAAGGTAAGATGAACGATCCAACTTGGAAAACTCGTCTTAGGATAGCTGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCAGCTGCCTCAATACCTATTATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCAAAAGTGTCGGATTTTGGAGCTTCAAGATTGATTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGAGTAGTTCTTGTGGAGCTGCTAACAGGGCAGCAACCTTTTAGTTTTGTTAGGCCGGAAGAGAGAAGAAATCTTGCTATGCACTTTCTGTCTTGCTTGAAAAAGGATAATGTGTTTGAAGTTATTCAAGATGGCATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCCGTTCTTGCAGCGAACTGCTTGAGACTTAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCATTCTTGGATCAATGCAGACCAAAATGTAGAGGAGAGTCACTACTTGCTTCATGAATCATCAACTAGCATTTATGAACTTGGTGATAGCAGCAGTCATGGTAATAGTGGGTATGACAGCTTGAAAGATCATGTGTTGATTGCCTTTGATGATGGAAGATGA

Protein sequence

>MS.gene86328.t1

MKLKAMHPLIMVSLALLVEAVAAEQVLPGCNYTCGGVKVPFPFGIGNSIAQDHTPCYMDSKFNLTCTNNSKLIYGKCTGLGCCQVDIPSEHIKELPYETFPLVVNWAVTNESCQIAQTTNNYACKENSECVDKDSDYDGYRCKCLEGFEGNPYLPGGCTDIDECATKTHVCENKENCRNTFGNHTCFCPKGQTGDGTKEGGCQPVHRNATSIVLPTVLGAGTVFIILFVGIVFFLIYQKRKFTKLKEKFFRQNGGSILEQKLHQRKDSSQIAHIFKENELRKATDNFDETLIIGKGGFGTVFKGKLDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFIHTQGKMNDPTWKTRLRIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLIPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGQQPFSFVRPEERRNLAMHFLSCLKKDNVFEVIQDGMWNEENKQEIKEVAVLAANCLRLRGEERPSMKEVAMELEGMRLMDKHSWINADQNVEESHYLLHESSTSIYELGDSSSHGNSGYDSLKDHVLIAFDDGR