Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86453.t1 | XP_003593687.1 | 86.4 | 125 | 17 | 0 | 53 | 177 | 6 | 130 | 8.10E-54 | 220.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86453.t1 | O82782 | 56.8 | 132 | 37 | 4 | 53 | 177 | 5 | 123 | 1.0e-28 | 128.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86453.t1 | G7IFI7 | 86.4 | 125 | 17 | 0 | 53 | 177 | 6 | 130 | 5.8e-54 | 220.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86453.t1 | MTR_2g015010 | 89.916 | 119 | 12 | 0 | 60 | 178 | 13 | 131 | 1.89e-64 | 204 |
MS.gene86453.t1 | MTR_8g040300 | 100.000 | 32 | 0 | 0 | 195 | 226 | 113 | 144 | 1.22e-14 | 72.4 |
MS.gene86453.t1 | MTR_8g035890 | 90.625 | 32 | 3 | 0 | 195 | 226 | 119 | 150 | 2.39e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86453.t1 | AT2G36230 | 58.647 | 133 | 35 | 5 | 53 | 178 | 5 | 124 | 1.69e-38 | 137 |
Find 55 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCCTCTTTCAAATCTTTA+AGG | 0.074825 | 5.1:+16165769 | None:intergenic |
TTCAAACAAGATGGACTTAA+AGG | 0.177160 | 5.1:-16165684 | MS.gene86453:CDS |
TCAGGCTCAAAATTGGTAAT+TGG | 0.210433 | 5.1:+16165735 | None:intergenic |
TAATGACAAGCTATGAAATA+TGG | 0.284545 | 5.1:-16164788 | MS.gene86453:CDS |
ATCCTCTTTCAAATCTTTAA+GGG | 0.339832 | 5.1:+16165770 | None:intergenic |
AGATTTATCAGGCTCAAAAT+TGG | 0.342018 | 5.1:+16165728 | None:intergenic |
TACTCAGCTGCAGATTTATC+AGG | 0.375812 | 5.1:+16165717 | None:intergenic |
AGAGGATTGAAGCGAAGAAA+AGG | 0.389778 | 5.1:+16166016 | None:intergenic |
AACATTGCAAGACAGTTGTT+TGG | 0.395025 | 5.1:-16164279 | MS.gene86453:CDS |
TTTGAGCAAGAAGAAATTGT+TGG | 0.395461 | 5.1:+16166107 | None:intergenic |
TGAACGGAGCATTGAATAGA+AGG | 0.397372 | 5.1:+16165965 | None:intergenic |
ACTTCAGCTCGCCGGTGACA+TGG | 0.438078 | 5.1:+16164325 | None:intergenic |
TTGAGCAAGAAGAAATTGTT+GGG | 0.456495 | 5.1:+16166108 | None:intergenic |
AGATGATTGTGGCGGAGGAA+TGG | 0.460559 | 5.1:+16166040 | None:intergenic |
GAGGATTGAAGCGAAGAAAA+GGG | 0.461112 | 5.1:+16166017 | None:intergenic |
GGTTGTCATGTTATCATGCT+TGG | 0.465735 | 5.1:-16165663 | MS.gene86453:CDS |
AAGGGAGATGATTGTGGCGG+AGG | 0.469234 | 5.1:+16166035 | None:intergenic |
CGTGTTGGTGAAGAGGAGAG+AGG | 0.471556 | 5.1:+16165998 | None:intergenic |
GAAGCATTGCATGCTTATCC+TGG | 0.477302 | 5.1:-16165609 | MS.gene86453:intron |
AAAGATTTGAAAGAGGATGA+TGG | 0.480092 | 5.1:-16165765 | MS.gene86453:CDS |
GGAAAGTGAAACAAATTGTT+GGG | 0.481539 | 5.1:-16165797 | MS.gene86453:CDS |
TCATCCTCTCTTCTCTCTCA+TGG | 0.485400 | 5.1:-16166079 | MS.gene86453:CDS |
TACCTTGTGAATATCGATGC+AGG | 0.487164 | 5.1:+16165934 | None:intergenic |
GCGAGAGTTGGTGCCGCCAC+AGG | 0.493402 | 5.1:+16166166 | None:intergenic |
CCTCTCTTCTCTCTCATGGT+AGG | 0.494725 | 5.1:-16166075 | MS.gene86453:CDS |
GGGAAAGTGAAACAAATTGT+TGG | 0.500496 | 5.1:-16165798 | MS.gene86453:CDS |
ATGTCACCGGCGAGCTGAAG+TGG | 0.509213 | 5.1:-16164323 | MS.gene86453:CDS |
AACCCTTAAAGATTTGAAAG+AGG | 0.519640 | 5.1:-16165772 | MS.gene86453:CDS |
AAGATTTGAAAGAGGATGAT+GGG | 0.525706 | 5.1:-16165764 | MS.gene86453:CDS |
CTTCAGCTCGCCGGTGACAT+GGG | 0.527166 | 5.1:+16164326 | None:intergenic |
ACCTTGTGAATATCGATGCA+GGG | 0.538181 | 5.1:+16165935 | None:intergenic |
CACAGGTGATGGTTGTGATA+CGG | 0.542600 | 5.1:+16166183 | None:intergenic |
GTTGGTGCCGCCACAGGTGA+TGG | 0.545932 | 5.1:+16166172 | None:intergenic |
AGAGAAGCAGCTTTACTCAA+AGG | 0.547387 | 5.1:+16165633 | None:intergenic |
GATGCAGGGGCGGAATTGAA+CGG | 0.547936 | 5.1:+16165949 | None:intergenic |
GAGCTTCCACTTCAGCTCGC+CGG | 0.548722 | 5.1:+16164317 | None:intergenic |
AGAACTTTGTGATCTGTATG+AGG | 0.549999 | 5.1:+16164351 | None:intergenic |
AAATTTGTTGCTTGATCACG+AGG | 0.555828 | 5.1:-16164528 | MS.gene86453:intron |
GCAAGAAGAAATTGTTGGGT+CGG | 0.558709 | 5.1:+16166112 | None:intergenic |
AAAGTTCTCTCCCATGTCAC+CGG | 0.559302 | 5.1:-16164336 | MS.gene86453:CDS |
GGCAGAGAAGAAGATGGTGG+TGG | 0.585050 | 5.1:+16166204 | None:intergenic |
GAAGAAAAGGGAGATGATTG+TGG | 0.603928 | 5.1:+16166029 | None:intergenic |
CCCCTGCATCGATATTCACA+AGG | 0.632190 | 5.1:-16165936 | MS.gene86453:intron |
TGATATCTCTGTGAATAACA+TGG | 0.634938 | 5.1:+16164558 | None:intergenic |
CCTTGTGAATATCGATGCAG+GGG | 0.636281 | 5.1:+16165936 | None:intergenic |
ATCACAACCATCACCTGTGG+CGG | 0.637740 | 5.1:-16166179 | MS.gene86453:CDS |
TGATACGGCAGAGAAGAAGA+TGG | 0.647907 | 5.1:+16166198 | None:intergenic |
ACGGAGCATTGAATAGAAGG+TGG | 0.653974 | 5.1:+16165968 | None:intergenic |
GTCGGAATCAGAGATTGTTG+CGG | 0.657278 | 5.1:+16166130 | None:intergenic |
GAAAAGGGAGATGATTGTGG+CGG | 0.670342 | 5.1:+16166032 | None:intergenic |
TGTGAATATCGATGCAGGGG+CGG | 0.677623 | 5.1:+16165939 | None:intergenic |
CGTATCACAACCATCACCTG+TGG | 0.681993 | 5.1:-16166182 | MS.gene86453:CDS |
CCTACCATGAGAGAGAAGAG+AGG | 0.693518 | 5.1:+16166075 | None:intergenic |
TACGGCAGAGAAGAAGATGG+TGG | 0.731980 | 5.1:+16166201 | None:intergenic |
AATATGTCAATGCTTCCGTG+AGG | 0.758709 | 5.1:+16164591 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACAATTATTTCATCTA+TGG | + | chr5.1:16166052-16166071 | None:intergenic | 15.0% |
!! | AAAACAATTATTTCATCTAT+GGG | + | chr5.1:16166051-16166070 | None:intergenic | 15.0% |
!! | AAACTTACAAAAATCAATAT+AGG | + | chr5.1:16165514-16165533 | None:intergenic | 15.0% |
!! | CAAATTACTAAAATAAAACA+CGG | + | chr5.1:16165027-16165046 | None:intergenic | 15.0% |
!!! | AAAAGTTAATATTGATTGAA+AGG | + | chr5.1:16164522-16164541 | None:intergenic | 15.0% |
!!! | AAAGTTAATATTGATTGAAA+GGG | + | chr5.1:16164521-16164540 | None:intergenic | 15.0% |
!! | AAATTATAAGTAGCATAGAA+TGG | + | chr5.1:16165731-16165750 | None:intergenic | 20.0% |
!! | ATACACATATTTCAAACTAA+AGG | - | chr5.1:16165349-16165368 | MS.gene86453:intron | 20.0% |
!! | TGAACAGAAAAGTAAAAAAA+TGG | + | chr5.1:16164863-16164882 | None:intergenic | 20.0% |
! | AACATACATTGTGAAAAACA+TGG | + | chr5.1:16165700-16165719 | None:intergenic | 25.0% |
! | ACAAAAATCAATATAGGACA+TGG | + | chr5.1:16165508-16165527 | None:intergenic | 25.0% |
! | ATACAAAGAATTGCTACAAA+AGG | + | chr5.1:16165762-16165781 | None:intergenic | 25.0% |
! | ATCCTCTTTCAAATCTTTAA+GGG | + | chr5.1:16164661-16164680 | None:intergenic | 25.0% |
! | GATACTTTATGACACATATA+TGG | + | chr5.1:16165546-16165565 | None:intergenic | 25.0% |
! | TAATGACAAGCTATGAAATA+TGG | - | chr5.1:16165640-16165659 | MS.gene86453:CDS | 25.0% |
! | TGTAATCAAACTAAAATACC+AGG | + | chr5.1:16164840-16164859 | None:intergenic | 25.0% |
!! | AAGGTATATCTAAGAAGTAT+TGG | + | chr5.1:16165274-16165293 | None:intergenic | 25.0% |
!! | AATTTTACATGTGGGTTTTT+AGG | - | chr5.1:16164567-16164586 | MS.gene86453:CDS | 25.0% |
!! | ATTTTACATGTGGGTTTTTA+GGG | - | chr5.1:16164568-16164587 | MS.gene86453:CDS | 25.0% |
!!! | TTTCCACATTGATAATGTTT+TGG | - | chr5.1:16165155-16165174 | MS.gene86453:intron | 25.0% |
AAAGATTTGAAAGAGGATGA+TGG | - | chr5.1:16164663-16164682 | MS.gene86453:intron | 30.0% | |
AACCCTTAAAGATTTGAAAG+AGG | - | chr5.1:16164656-16164675 | MS.gene86453:intron | 30.0% | |
AAGATTTGAAAGAGGATGAT+GGG | - | chr5.1:16164664-16164683 | MS.gene86453:intron | 30.0% | |
ACAATAAGTAGCTTTCATGT+CGG | + | chr5.1:16165125-16165144 | None:intergenic | 30.0% | |
AGATTTATCAGGCTCAAAAT+TGG | + | chr5.1:16164703-16164722 | None:intergenic | 30.0% | |
ATTATTTCATCTATGGGCAA+TGG | + | chr5.1:16166045-16166064 | None:intergenic | 30.0% | |
CACAAAATATCACATGTGTT+TGG | + | chr5.1:16165386-16165405 | None:intergenic | 30.0% | |
CATCCTCTTTCAAATCTTTA+AGG | + | chr5.1:16164662-16164681 | None:intergenic | 30.0% | |
GGAAAGTGAAACAAATTGTT+GGG | - | chr5.1:16164631-16164650 | MS.gene86453:intron | 30.0% | |
GTTCCAAAACATTATCAATG+TGG | + | chr5.1:16165161-16165180 | None:intergenic | 30.0% | |
TAAGCCTTCAATTGATATTG+TGG | - | chr5.1:16165067-16165086 | MS.gene86453:intron | 30.0% | |
TAGTCGAAGAGATGTTAAAA+CGG | + | chr5.1:16165988-16166007 | None:intergenic | 30.0% | |
TCTGTATCATACTATCTATC+TGG | - | chr5.1:16165564-16165583 | MS.gene86453:intron | 30.0% | |
TGATATCTCTGTGAATAACA+TGG | + | chr5.1:16165873-16165892 | None:intergenic | 30.0% | |
TTAACTTCAACTCACTATTC+TGG | + | chr5.1:16165187-16165206 | None:intergenic | 30.0% | |
TTGAGCAAGAAGAAATTGTT+GGG | + | chr5.1:16164323-16164342 | None:intergenic | 30.0% | |
TTTGAGCAAGAAGAAATTGT+TGG | + | chr5.1:16164324-16164343 | None:intergenic | 30.0% | |
TTTGCCAATTCATGTCAAAA+AGG | - | chr5.1:16164540-16164559 | MS.gene86453:CDS | 30.0% | |
! | AAGGTACGAATTTTACATGT+GGG | - | chr5.1:16164559-16164578 | MS.gene86453:CDS | 30.0% |
! | ATTGTCATTTAACTCCACAT+AGG | - | chr5.1:16166218-16166237 | MS.gene86453:CDS | 30.0% |
! | TGAGTTGAAGTTAACATTGA+AGG | - | chr5.1:16165193-16165212 | MS.gene86453:intron | 30.0% |
! | TGATCAAGCAACAAATTTTC+AGG | + | chr5.1:16165898-16165917 | None:intergenic | 30.0% |
! | TGGTGTGTTTTGTAAAATTG+CGG | - | chr5.1:16165087-16165106 | MS.gene86453:intron | 30.0% |
! | TTAGTACATTTTAAGCCTCA+CGG | - | chr5.1:16165822-16165841 | MS.gene86453:intron | 30.0% |
! | TTCAAACAAGATGGACTTAA+AGG | - | chr5.1:16164744-16164763 | MS.gene86453:intron | 30.0% |
!! | AAAGGTACGAATTTTACATG+TGG | - | chr5.1:16164558-16164577 | MS.gene86453:CDS | 30.0% |
!!! | GCAATGAAATTTTAAGACGT+GGG | - | chr5.1:16164590-16164609 | MS.gene86453:CDS | 30.0% |
AACATTGCAAGACAGTTGTT+TGG | - | chr5.1:16166149-16166168 | MS.gene86453:CDS | 35.0% | |
ACTATCTATCTGGACTTCTT+TGG | - | chr5.1:16165574-16165593 | MS.gene86453:intron | 35.0% | |
AGAACTTTGTGATCTGTATG+AGG | + | chr5.1:16166080-16166099 | None:intergenic | 35.0% | |
CACACCACAATATCAATTGA+AGG | + | chr5.1:16165074-16165093 | None:intergenic | 35.0% | |
CTCTGATTTCAATACCTATG+TGG | + | chr5.1:16166235-16166254 | None:intergenic | 35.0% | |
GATGAGATCATCAGCATAAT+TGG | + | chr5.1:16165964-16165983 | None:intergenic | 35.0% | |
GGGAAAGTGAAACAAATTGT+TGG | - | chr5.1:16164630-16164649 | MS.gene86453:intron | 35.0% | |
TGCATGGAAGGTTATCTTTA+AGG | - | chr5.1:16165223-16165242 | MS.gene86453:intron | 35.0% | |
! | CGTACCTTTTTGACATGAAT+TGG | + | chr5.1:16164547-16164566 | None:intergenic | 35.0% |
! | GCTACTCTTTTCAAACAAGA+TGG | - | chr5.1:16164735-16164754 | MS.gene86453:intron | 35.0% |
! | TCAGGCTCAAAATTGGTAAT+TGG | + | chr5.1:16164696-16164715 | None:intergenic | 35.0% |
! | TGTGTTTTGTAAAATTGCGG+TGG | - | chr5.1:16165090-16165109 | MS.gene86453:intron | 35.0% |
! | TTTTCTGTTCATGCTTATCC+TGG | - | chr5.1:16164872-16164891 | MS.gene86453:intron | 35.0% |
!! | AAATTTGTTGCTTGATCACG+AGG | - | chr5.1:16165900-16165919 | MS.gene86453:intron | 35.0% |
!! | TGGGTCATTGTGTTTTTGTA+GGG | - | chr5.1:16164609-16164628 | MS.gene86453:intron | 35.0% |
!!! | GGCAATGAAATTTTAAGACG+TGG | - | chr5.1:16164589-16164608 | MS.gene86453:CDS | 35.0% |
AACTTACTTTGTTGCAGGTG+GGG | - | chr5.1:16164979-16164998 | MS.gene86453:intron | 40.0% | |
AATATGTCAATGCTTCCGTG+AGG | + | chr5.1:16165840-16165859 | None:intergenic | 40.0% | |
ACAACTTACTTTGTTGCAGG+TGG | - | chr5.1:16164977-16164996 | MS.gene86453:intron | 40.0% | |
ACCTTGTGAATATCGATGCA+GGG | + | chr5.1:16164496-16164515 | None:intergenic | 40.0% | |
AGAGAAGCAGCTTTACTCAA+AGG | + | chr5.1:16164798-16164817 | None:intergenic | 40.0% | |
AGAGGATTGAAGCGAAGAAA+AGG | + | chr5.1:16164415-16164434 | None:intergenic | 40.0% | |
ATCTATCTGGACTTCTTTGG+AGG | - | chr5.1:16165577-16165596 | MS.gene86453:intron | 40.0% | |
CAACTTACTTTGTTGCAGGT+GGG | - | chr5.1:16164978-16164997 | MS.gene86453:intron | 40.0% | |
CAGTCAGAAATACGTATCGA+AGG | + | chr5.1:16165293-16165312 | None:intergenic | 40.0% | |
GAAGAAAAGGGAGATGATTG+TGG | + | chr5.1:16164402-16164421 | None:intergenic | 40.0% | |
GAGGATTGAAGCGAAGAAAA+GGG | + | chr5.1:16164414-16164433 | None:intergenic | 40.0% | |
GCAAGAAGAAATTGTTGGGT+CGG | + | chr5.1:16164319-16164338 | None:intergenic | 40.0% | |
GCGCAAGATGCAATACATTT+CGG | - | chr5.1:16164902-16164921 | MS.gene86453:intron | 40.0% | |
GGTTGTCATGTTATCATGCT+TGG | - | chr5.1:16164765-16164784 | MS.gene86453:intron | 40.0% | |
TACCTTGTGAATATCGATGC+AGG | + | chr5.1:16164497-16164516 | None:intergenic | 40.0% | |
TACTCAGCTGCAGATTTATC+AGG | + | chr5.1:16164714-16164733 | None:intergenic | 40.0% | |
TGCACAACTTACTTTGTTGC+AGG | - | chr5.1:16164974-16164993 | MS.gene86453:intron | 40.0% | |
! | AAGTTGTGCAGAAAGTGTAG+TGG | + | chr5.1:16164964-16164983 | None:intergenic | 40.0% |
!! | AGATTTTCGTGTTGGTGAAG+AGG | + | chr5.1:16164440-16164459 | None:intergenic | 40.0% |
!! | GGGTCATTGTGTTTTTGTAG+GGG | - | chr5.1:16164610-16164629 | MS.gene86453:intron | 40.0% |
!! | GTGGGTCATTGTGTTTTTGT+AGG | - | chr5.1:16164608-16164627 | MS.gene86453:intron | 40.0% |
!! | TGAACGGAGCATTGAATAGA+AGG | + | chr5.1:16164466-16164485 | None:intergenic | 40.0% |
!!! | CAACTCTCGCTTTTTCATCT+CGG | - | chr5.1:16164275-16164294 | MS.gene86453:CDS | 40.0% |
AAAGTTCTCTCCCATGTCAC+CGG | - | chr5.1:16166092-16166111 | MS.gene86453:CDS | 45.0% | |
CATTGAAGGCTGTAGTTGCA+TGG | - | chr5.1:16165207-16165226 | MS.gene86453:intron | 45.0% | |
CATTTCGGAGCTAGAACACA+AGG | - | chr5.1:16164917-16164936 | MS.gene86453:intron | 45.0% | |
CCTTGTGAATATCGATGCAG+GGG | + | chr5.1:16164495-16164514 | None:intergenic | 45.0% | |
CGAGATGAAAAAGCGAGAGT+TGG | + | chr5.1:16164277-16164296 | None:intergenic | 45.0% | |
GAAAAGGGAGATGATTGTGG+CGG | + | chr5.1:16164399-16164418 | None:intergenic | 45.0% | |
GTCGGAATCAGAGATTGTTG+CGG | + | chr5.1:16164301-16164320 | None:intergenic | 45.0% | |
TCATCCTCTCTTCTCTCTCA+TGG | - | chr5.1:16164349-16164368 | MS.gene86453:CDS | 45.0% | |
TGATACGGCAGAGAAGAAGA+TGG | + | chr5.1:16164233-16164252 | None:intergenic | 45.0% | |
! | CACAGGTGATGGTTGTGATA+CGG | + | chr5.1:16164248-16164267 | None:intergenic | 45.0% |
! | GAAGGTGGAGATTTTCGTGT+TGG | + | chr5.1:16164448-16164467 | None:intergenic | 45.0% |
!! | ACGGAGCATTGAATAGAAGG+TGG | + | chr5.1:16164463-16164482 | None:intergenic | 45.0% |
!! | GAAGCATTGCATGCTTATCC+TGG | - | chr5.1:16164819-16164838 | MS.gene86453:intron | 45.0% |
AAGTAGCTTTCATGTCGGCG+TGG | + | chr5.1:16165120-16165139 | None:intergenic | 50.0% | |
ATCACAACCATCACCTGTGG+CGG | - | chr5.1:16164249-16164268 | MS.gene86453:intron | 50.0% | |
CCTACCATGAGAGAGAAGAG+AGG | + | chr5.1:16164356-16164375 | None:intergenic | 50.0% | |
CCTCTCTTCTCTCTCATGGT+AGG | - | chr5.1:16164353-16164372 | MS.gene86453:CDS | 50.0% | |
CGTATCACAACCATCACCTG+TGG | - | chr5.1:16164246-16164265 | MS.gene86453:intron | 50.0% | |
GAAGGCTGTAGTTGCATGGA+AGG | - | chr5.1:16165211-16165230 | MS.gene86453:intron | 50.0% | |
GCATCTTGCGCTCAAATACC+AGG | + | chr5.1:16164893-16164912 | None:intergenic | 50.0% | |
TACGGCAGAGAAGAAGATGG+TGG | + | chr5.1:16164230-16164249 | None:intergenic | 50.0% | |
TGTGAATATCGATGCAGGGG+CGG | + | chr5.1:16164492-16164511 | None:intergenic | 50.0% | |
! | AGATGATTGTGGCGGAGGAA+TGG | + | chr5.1:16164391-16164410 | None:intergenic | 50.0% |
! | CCCCTGCATCGATATTCACA+AGG | - | chr5.1:16164492-16164511 | MS.gene86453:intron | 50.0% |
AAGGGAGATGATTGTGGCGG+AGG | + | chr5.1:16164396-16164415 | None:intergenic | 55.0% | |
GATGCAGGGGCGGAATTGAA+CGG | + | chr5.1:16164482-16164501 | None:intergenic | 55.0% | |
! | CGTGTTGGTGAAGAGGAGAG+AGG | + | chr5.1:16164433-16164452 | None:intergenic | 55.0% |
! | GGCAGAGAAGAAGATGGTGG+TGG | + | chr5.1:16164227-16164246 | None:intergenic | 55.0% |
ACTTCAGCTCGCCGGTGACA+TGG | + | chr5.1:16166106-16166125 | None:intergenic | 60.0% | |
ATGTCACCGGCGAGCTGAAG+TGG | - | chr5.1:16166105-16166124 | MS.gene86453:CDS | 60.0% | |
CTTCAGCTCGCCGGTGACAT+GGG | + | chr5.1:16166105-16166124 | None:intergenic | 60.0% | |
GAGCTTCCACTTCAGCTCGC+CGG | + | chr5.1:16166114-16166133 | None:intergenic | 60.0% | |
!! | GTTGGTGCCGCCACAGGTGA+TGG | + | chr5.1:16164259-16164278 | None:intergenic | 65.0% |
!! | GCGAGAGTTGGTGCCGCCAC+AGG | + | chr5.1:16164265-16164284 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 16164193 | 16166257 | 16164193 | ID=MS.gene86453 |
chr5.1 | mRNA | 16164193 | 16166257 | 16164193 | ID=MS.gene86453.t1;Parent=MS.gene86453 |
chr5.1 | exon | 16165937 | 16166257 | 16165937 | ID=MS.gene86453.t1.exon1;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16165937 | 16166257 | 16165937 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
chr5.1 | exon | 16165610 | 16165820 | 16165610 | ID=MS.gene86453.t1.exon2;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16165610 | 16165820 | 16165610 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
chr5.1 | exon | 16164776 | 16164825 | 16164776 | ID=MS.gene86453.t1.exon3;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16164776 | 16164825 | 16164776 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
chr5.1 | exon | 16164529 | 16164624 | 16164529 | ID=MS.gene86453.t1.exon4;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16164529 | 16164624 | 16164529 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
chr5.1 | exon | 16164275 | 16164376 | 16164275 | ID=MS.gene86453.t1.exon5;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16164275 | 16164376 | 16164275 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
chr5.1 | exon | 16164193 | 16164210 | 16164193 | ID=MS.gene86453.t1.exon6;Parent=MS.gene86453.t1 |
chr5.1 | CDS | 16164193 | 16164210 | 16164193 | ID=cds.MS.gene86453.t1;Parent=MS.gene86453.t1 |
Gene Sequence |
Protein sequence |