AlfalfaGEDB | MS.gene86528

M. sativa cultivar XinJiangDaYe / MS.gene86528

KEGG: K08852
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140098 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01011.24 PF06479.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86528.t1	XP_003612390.1	97.7	905	20	1	1	905	1	904	0.00E+00	1742.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86528.t1	Q93VJ2	44.5	895	393	25	56	900	35	875	6.6e-181	636.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86528.t1	G7K1A9	97.7	905	20	1	1	905	1	904	0.0e+00	1742.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86528.t1	MTR_5g024510	97.901	905	18	1	1	905	1	904	0.0	1824
MS.gene86528.t1	MTR_5g024510	98.584	777	11	0	129	905	6	782	0.0	1582
MS.gene86528.t1	MTR_5g024510	97.754	757	16	1	1	757	1	756	0.0	1520
MS.gene86528.t1	MTR_8g073190	57.714	901	275	18	31	901	20	844	0.0	958
MS.gene86528.t1	MTR_8g072590	41.060	755	301	24	49	790	25	648	4.16e-157	476
MS.gene86528.t1	MTR_6g065690	62.393	117	6	2	351	467	1	79	2.54e-33	126
MS.gene86528.t1	MTR_6g065690	75.000	48	7	1	639	681	82	129	6.90e-13	67.8
MS.gene86528.t1	MTR_7g113490	27.715	267	148	8	507	768	104	330	1.08e-18	91.7
MS.gene86528.t1	MTR_1g105290	26.217	267	152	8	508	769	92	318	5.16e-18	89.0
MS.gene86528.t1	MTR_1g105290	26.316	266	151	8	508	768	92	317	6.12e-18	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86528.t1	AT2G17520	68.539	445	127	3	469	902	395	837	0.0	640
MS.gene86528.t1	AT5G24360	44.972	885	390	26	61	900	43	875	0.0	634
MS.gene86528.t1	AT5G24360	44.683	884	392	25	62	900	50	881	0.0	632
MS.gene86528.t1	AT5G24360	44.824	879	388	25	67	900	35	861	0.0	631
MS.gene86528.t1	AT3G11870	42.437	476	222	16	456	901	100	553	2.44e-97	316
MS.gene86528.t1	AT3G06030	28.571	266	146	8	507	768	104	329	1.03e-21	101
MS.gene86528.t1	AT1G54960	25.405	370	194	15	489	842	74	377	7.25e-19	92.0
MS.gene86528.t1	AT1G54960	25.405	370	194	15	489	842	74	377	7.25e-19	92.0
MS.gene86528.t1	AT1G09000	27.027	296	160	10	489	768	75	330	1.36e-18	91.3
MS.gene86528.t1	AT1G09000	27.027	296	160	10	489	768	75	330	2.12e-18	90.9

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Find 199 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTACGGCACTGG+TGG	0.625351	5.1:-15167670	MS.gene86528:CDS
AAAATCACCTATGATAGTAA+TGG	0.555445	5.1:-15165896	MS.gene86528:CDS
AAAGATGGAGCTGTTATACT+TGG	0.504620	5.1:-15166550	MS.gene86528:CDS
AACAGCAACATAATCAGCAA+CGG	0.639691	5.1:+15166588	None:intergenic
AACTTTAGTAAAAGTGGAGA+TGG	0.524497	5.1:+15165164	None:intergenic
AAGAGAGAGTTGTTGGGATT+GGG	0.331180	5.1:+15167770	None:intergenic
AAGAGTGATAGATTTCTCCA+TGG	0.657204	5.1:-15165971	MS.gene86528:CDS
AAGGAGCACTGTATTTGAAG+TGG	0.567852	5.1:-15166521	MS.gene86528:CDS
AAGGGAAGTTGATCTGAGCA+GGG	0.657506	5.1:-15165828	MS.gene86528:CDS
AAGTAGTCATTGAATCCTTC+CGG	0.429425	5.1:+15161568	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAAATCAAACCGTCG+GGG	-	chr5.1:15162316-15162335	MS.gene86528:intron	30.0%
AAATATGACAGAGAATGGTT+GGG	-	chr5.1:15166479-15166498	MS.gene86528:CDS	30.0%
AACTTTAGTAAAAGTGGAGA+TGG	+	chr5.1:15164159-15164178	None:intergenic	30.0%
AAGATGGGAATATTATTCCA+AGG	-	chr5.1:15165310-15165329	MS.gene86528:CDS	30.0%
AAGTTATATTCCCAGGAAAT+TGG	-	chr5.1:15166905-15166924	MS.gene86528:intron	30.0%
AATAATCAGTCCTAACTATC+TGG	+	chr5.1:15162997-15163016	None:intergenic	30.0%
ACATATGAATCCATCGTTTA+TGG	+	chr5.1:15166227-15166246	None:intergenic	30.0%
AGAATGACATACCTTAGATT+GGG	+	chr5.1:15166107-15166126	None:intergenic	30.0%
AGACATCAAAATTATCTTGG+AGG	+	chr5.1:15162638-15162657	None:intergenic	30.0%
AGTTATGTAGATTAACACGT+AGG	+	chr5.1:15165800-15165819	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	15161465	15167877	15161465	ID=MS.gene86528
chr5.1	mRNA	15161465	15167877	15161465	ID=MS.gene86528.t1;Parent=MS.gene86528
chr5.1	exon	15167494	15167877	15167494	ID=MS.gene86528.t1.exon1;Parent=MS.gene86528.t1
chr5.1	CDS	15167494	15167877	15167494	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1
chr5.1	exon	15165158	15166623	15165158	ID=MS.gene86528.t1.exon2;Parent=MS.gene86528.t1
chr5.1	CDS	15165158	15166623	15165158	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1
chr5.1	exon	15164175	15164347	15164175	ID=MS.gene86528.t1.exon3;Parent=MS.gene86528.t1
chr5.1	CDS	15164175	15164347	15164175	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1
chr5.1	exon	15163228	15163474	15163228	ID=MS.gene86528.t1.exon4;Parent=MS.gene86528.t1
chr5.1	CDS	15163228	15163474	15163228	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1
chr5.1	exon	15161923	15162226	15161923	ID=MS.gene86528.t1.exon5;Parent=MS.gene86528.t1
chr5.1	CDS	15161923	15162226	15161923	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1
chr5.1	exon	15161465	15161608	15161465	ID=MS.gene86528.t1.exon6;Parent=MS.gene86528.t1
chr5.1	CDS	15161465	15161608	15161465	ID=cds.MS.gene86528.t1;Parent=MS.gene86528.t1

Gene Sequence

>MS.gene86528

ATGAATCATTCCGTTTCAATCTTCTTCTTCATCTTCTTCATCACAATCTTCACCTGCATCGTTGCAGATGTATCCATCCCCACCTCCCAATCCCAACAACTCTCTCTTCTCCACAACGGTTTCTCTCCCTCTCCTCCCGCTCTTCCACCGCCATCGTCGCCGTTAGTTTCGAATTCATTGGACAGAAAACCTGTTACGGCACTGGTGGCTGGTTTAGACGGAACTATTTATCTTGTTGAAAGTGCTTCTGGGAGGGTAATTTGGTCTTTTTCATCTGGTTCACCGATCTATCATTCTTCTGCCAATACTCCTCCGTCTTCTGGTCTTATTGAATGTGGTGATGACTGGGAATTGATCTTTCATGATCCCCACTTTGGTAAAACGGTATTATCATTTTAACAGTGTATGTTTTTATTTTTTTACTTTTACTTTGGGAATTTTTTACCTTAATGTGTGTTTGGTTCTGCGGCCACAAAAATTGATTTTGATTGAATTGTTTAGGTAAATTGATTTTAGTTAAAATTGAGTTGGATGTGAAGTGGTTTATGTCTGGATACATTCATATAAAAACGAGTTGAACAATAAATTTGAGTGTCAATAGCTACTAATTGTAGTTTCAGGTTAGAATCATTTTTAGTCTTAGTCAACATCACCCAAACATGTCTAAATCTGTTTTGATAACTAGTTTAATTAAGTGCTTATAGCATATATGCTTATCATATAGCTAGCCACTATGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGCTGTTGTATGCTTAACATATAAGTTTTTATGTATAAGCTATTTCTGGAACAAATGACAAAATAAAATCAAACCGTCGGGGGGGGAGGTTGGGGCTGGGGAACTGAACTAGTTTGAGCTAAGGGTTAAAGGAGTTGGACATCCTGAGTTCAAACCGAGACAAAAGGAGTAAATACTAATCTAAAAAAAACTAGATAAGTTCAAATAAGCCAATCCAACTTATTAACCTTAAGTTACATTTTAAAGTTGTATAATCAATTTTGACACTATGAATCCAAACACACGCTAAGCGAACACATCAAATTCATAATCACGGTGTTACGTACGCTATTCCTCTTTGTAACTCACCAATTGCAATGGCTGAGTTGAGTGAAGAGTCCTCCAAGATAATTTTGATGTCTGTCATGTTGACTTTTCTTCAATGTATGGTCAATAAGTTGTGTTTAAACTTGAAACCTGCAGAGACTCAAGGAATCCGTTGCTGATTATGTTGCTGTTACGCCTATTGTGTCGAAAGATGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTATTTGAAGTGGATGCTAAAACAGGAAAGCTCCTTAGAAGCTATGGTGCTGCTGATTTTCGTAATGTTTCTACTACTGCAATGTGGAGTGGTGACAAGGACAGTGAGGGTGTTACTAACGACTTCCGTGCAAATAATAAGGAGCTTGCTGATCCAGCAAAGCTTAATTTACCAGAGTTTTTGCTCCAGATAGTTAGGACTGATTATTTTTTACAATCTGTGGGTCCTGGTTCAGGAATAGTGTTATGGACTATGTCAGTAGCTGAATTTGAGGCTGTATTATTTTGCCAACATAATGAAAATCCTACCTTGACAGCTTCACTTGATGCAGAAGGTGAGTATGCTTATGATGTTGACAGTGGCTTGGATTTTGCTATGCCGTATGCGTGTCCTGACAGAAAACTCAGAGAAGTCTATCGCCAACGAAAGAATTTTCTGTTTGAACCTGATAAAATTCAAAGATTATCTGATGTTGATGCTTATCAAGAGAAAGGTATGCTCCCAATGCCCGATTTAAAGCTGATGCTTCCATCACAACCTAAGAGTGATAGATTTCTCCATGGTCATGGTGGTAATATGATGCTACCTGTGCCTGTGCCAAATTATATGCAGCCGAAAATCACCTATGATAGTAATGGTAATGCAGTTATGCTTCCGCAGCCTCCCATGGAGATCACTGCACCAAGGGAAGTTGATCTGAGCAGGGTGATTGAATTGTCAATGTCATTATTGGTTGTATTATCTGTGGTCTTTCTTTTGATATTGTACCAAAATCGGTTAAAAAATAATGTTACATCGAAGGTCCAAATCAGTGACTCAGATTTGAAAAGTTCGCCTTCTAAAAAAAAGAGAGTACGTAAGTCAGGAAAAAACAACATCATTGTTGAGGAGAATATACGAATTCGTAAGGAAGCAGAAAATGAGGCACGGTTGCACTATAATAATGTTAATGGACGCAGGATCGGTAAACTGTGTGTATTAAATAAAGAAATCGCAAAGGGAAGTAATGGCACCATTGTCCTTGAAGGGATATATGAAGGTCGGACAGTTGCTGTCAAGCGTCTTGTTCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAACCTCATTGCTTCTGACTTTCATCCAAATATTGTTCGATGGTATGGTGTGGAATATGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATCTGATTACTTTTTATTCAGATTTGTCAGAAAACTCGGTTTTAAGTAAGGATCAAGCTTTTGATATTTTTAAGAAGGCCCAAATAGAGGCACAGAAGGATGATATGCAATGTCTTTGGAAATCGAATGGTTATCCATCTCCACTTTTACTAAAGTTGATGAGGTCAGTAAAGCAACTTGATTTGATGATATATATGATTACAATTGTGACCTTCCTAGATATTTTTTTTTTTTTTTTTAAAAATTGTAATATTTCTTTCTCAGCCAAGACAGAATAAATGTTATGTGAAAGCTACTAAAATATTTGAGACTAGTGAGATACATCATGTAGGTATGAGTGTTACAGTCCCATCAGTGAACAGGGTAGCAACTAGCAACTAACAAGTTTAACTAACATGTCCTTAATGTTTTGACATTAGAAATTAAAGCAAAGGTTTTATATGATTATTCAGTTATGGGTTAAGAAATGTACACTGTACTTTGTCAAGGTTGATGTTTAGGAGCTTTGCTGCAATTAAGGAGAGACAATTTTTATGAATAACAAGGATGGGTGATAAACAGGGATACTAGATCTAACTTCTAAGTTAGCAGTTTCAATAAAGAGATTATGAGATGATTGACTAGAATAATTTAGGCATTACCTAAGAGTTGGAGAATCCACGAGGATGAGAAAGATACACGGACAACATAATTGAGGTAAAAGAGATACGTTAGCAAAAGATCGAAGAATGGTAAACATTGAATCCGATTGAATTGTTAGGAGCATGAGTGTCTTCATTTAGGAGGAATACACAAAGGGTCCTGTTTTGTTTCCATTTACAACACCTATATTTAAGCTAAGTATCGGAGGTTGATAGTTGTCTTCATTTAGTGATAGAGCATGAGTGTCCACTAACTCCGTGTTTAAATTACACCTATTTTATTTTATTTTTGTTGACATCATGTTAACTTTTGCTTTTATATTGCATCACAGGGATGTGGTTTCTGGGCTTGTCCATTTGCATGAACTAGGAATAATACACCGGGATTTGAAACCCCAAAATGTTTTGTTAATCAAGGAAAGGTCATTATGTGCCAAACTTTCTGATATGGGGATTAGTAAACGACTTCTTGAAGACATGTCTTCTTTAGGCCATAGTTCTACTGGTGAGTACAAAAGTTTGTGTTTTTTAGCATTCACGATTACTAATTAGCAATGTTATTAAACTCAGGACTAGTCGTTGACTTAGGGTGTGTTTGTTTCAAGTTTACCAAATTTATTCCTAGGAATAATATTCCTTGGAACATAAAGATGGGAATATTATTCCAAGGTATTTAGAAAAAAGATGTTTGCTTAACATTATAATATTCCTGGGAACCATAAAAATAGGAATTATAATAGGAAATTACTCATGAAATTATTCCCATCTCCATGGGAACTTTATTCCCACCCTTTACTTTGGGAAAATTTTTCTATTCCCAGGAATGTTTTATCCCCGGGAATAAAATTTAGTAAACTTGTAACAAACATAGGCATGTGTATTCCTATGGTTTTATTCCCGGGAATCTACGAAGATAACTTGAAACAAACGCACCCTTAGTTACTTGGTTTGTCGGTCATTGGTCGAACTAATGAGTCTCTAGTGGAACTACATGAATCAGTATATACTAAATATATAAATATAAATCATTTTTCTAAGAAATGTACTATTTATTTTCTGTGTATATGGTTAAAAGCTCTCCAACCATACATTCCATATGCTAATTCAAACATGTAGTTATTTTCTTAGTCTAATCCTACGTGTTAATCTACATAACTTGATCATTATTCCTGCTCATACAATAATGTTTAATGACTTATTTGCAGGCTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTCTTCAGGGACGCCAAACACGGGCTGTAGATTTGTTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACAGCAGGAAGACATCCATTTGGAGAGCGACTTGAGCGTGATGTCAACATTGTTAAAAATAAAAAAGATCTTTTCTTAGTAGAGTTTCTTCCTGAAGCAGAGGATCTAATTTCTTGTTTGTTAAACCCTGACCCCAATCTAAGGTATGTCATTCTCGTTCAATGTGTTTTCTAGGAGATTAGAATTATATTCTCTCACACCTTCATTAATAGTTTGCATTTTGATATGACTTCATTGATATATAGCATAAAGCCATAAACGATGGATTCATATGTAGAATGTCATTGTTTAGTTTGCTAGTTGCCTTCTGTGAATAACATCTCAATTGAGATTATTCCTCTAGTGTTTCAAAGTTCAAATCAACTGCATCTTTATATTAATATGTAGTGATGGATATTCTGCATTTTTATTCTTTCAGAAACCTGGCCATCTCCGGATATGTGTCTGAGACTTGTTTTATGTTGAGCCCAACATTTTTAAATGATGTGATTTAATAAATAAATAAATAAATATGACAGAGAATGGTTGGGACCTGTTAGATATATAGGAACTCATCCTGAATGCACTGCAGAAAGCAGTTACTGGCAGATATTACAGTGACCTTCAATCAGAGTTACTGAAAACCTTGATTAAATGCTACAAGCCTACAAGTGGCTGTGTTAAGTCCAGTAAGCATTTAAAAATTTTCAAGATAAGTATTCATGCGAGGATATTCATTTTGGTGCTTTTGGGCCATGGATGAATCCTAAAAGGGTGGAAGGACATTGCAAGATAGTACTACTCCGGTTTTAATATATGCAAAAGTCAAAATGTATTCGGTCTTTATTTGTGCTAAATACATTTTGACTTTTGCTTATATTTAAAACCGGAGGGAGTAGTTCATTTGTCTATCACATGCATGGAACTGATGGAAGGATAGGGTGGGAGCAAAATAAGTTATATTCCCAGGAAATTGGCAAATGGATTATGTTGCATGTAATTGTCAAATTAACAAATCTGAGATTTTACTGCTTAAACTATTAACAAATGGGCTGTATTATAGCTCTTACTAATTGGAGGAACCGGAAGTATATAGATTTGTGTTTGTCTTGTCTGGTTAGAAGGTAACACTTTCACTAAAGAAATTTTTTCATTTAATTGTCAGGCCAAAGGCGATTGAAGTATTGCATCACCCTCTATTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGCGACGTTAGTGACAGAGTGGAACTTGAAGATAGAGAGACTAATTCTGTTCTTTTGAATGTATTAGAGAGCACTGCTCCACTGGCTTTAGGTGCAAAATGGGACGAAAAGATGGAACCAGCTTTCATTGCCAACATTGGTCGTTACAGGCGATATAAATTTGACAGCGTCCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTTTAGGGAATTGCCTCCAGAAATTCAGGTTTCTTCTTGGACTAGCAATTTTGCATTTTTTGTTTTCCTTTTTTATCTGGTCGAAGGTTAGGCTTGTCTAAATAAGTTGAAATCCAGGTTTCTTCTTGGACCGACACTTGAGTAGTGATTTTATCTTGCAACATCCAAACATTTTCTATTTTTCTAAACAACAATCATAAGAATTTCCTGAAGATGATCCTTATTCAATTTGCTGGTGATAGCTTTTCATATGAGAGCTCAAAATGCATCTTTTTTAACACGTCTCCAAGAACATATCATAGACATGCGTGACTTATAATTTCTTTCTTGCTGGTTTATCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCTAGGCTCTTGATTGAAGTGTACAAAGTTATCTGCAACTACTGCAAGGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA

Protein sequence

>MS.gene86528.t1

MNHSVSIFFFIFFITIFTCIVADVSIPTSQSQQLSLLHNGFSPSPPALPPPSSPLVSNSLDRKPVTALVAGLDGTIYLVESASGRVIWSFSSGSPIYHSSANTPPSSGLIECGDDWELIFHDPHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSYGAADFRNVSTTAMWSGDKDSEGVTNDFRANNKELADPAKLNLPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFEAVLFCQHNENPTLTASLDAEGEYAYDVDSGLDFAMPYACPDRKLREVYRQRKNFLFEPDKIQRLSDVDAYQEKGMLPMPDLKLMLPSQPKSDRFLHGHGGNMMLPVPVPNYMQPKITYDSNGNAVMLPQPPMEITAPREVDLSRVIELSMSLLVVLSVVFLLILYQNRLKNNVTSKVQISDSDLKSSPSKKKRVRKSGKNNIIVEENIRIRKEAENEARLHYNNVNGRRIGKLCVLNKEIAKGSNGTIVLEGIYEGRTVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDHDFVYLALERCACNLDDLITFYSDLSENSVLSKDQAFDIFKKAQIEAQKDDMQCLWKSNGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLLIKERSLCAKLSDMGISKRLLEDMSSLGHSSTGCGSSGWQAPEQLLQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFLPEAEDLISCLLNPDPNLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETNSVLLNVLESTAPLALGAKWDEKMEPAFIANIGRYRRYKFDSVRDLLRVMRNKLNHFRELPPEIQELIGPVPEGFNDYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID