Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86589.t1 | GAU32889.1 | 43.8 | 552 | 136 | 7 | 51 | 428 | 20 | 571 | 1.70E-118 | 436.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86589.t1 | Q9LKR4 | 30.0 | 207 | 133 | 5 | 92 | 291 | 61 | 262 | 1.8e-15 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86589.t1 | A0A2Z6NML7 | 43.8 | 552 | 136 | 7 | 51 | 428 | 20 | 571 | 1.2e-118 | 436.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene86589.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86589.t1 | MTR_1g070355 | 48.485 | 264 | 126 | 3 | 26 | 279 | 4 | 267 | 4.76e-76 | 249 |
| MS.gene86589.t1 | MTR_5g076070 | 32.677 | 254 | 148 | 4 | 26 | 278 | 14 | 245 | 1.31e-38 | 142 |
| MS.gene86589.t1 | MTR_6g022080 | 34.783 | 184 | 120 | 0 | 67 | 250 | 66 | 249 | 1.05e-37 | 138 |
| MS.gene86589.t1 | MTR_0060s0090 | 48.921 | 139 | 51 | 2 | 35 | 173 | 25 | 143 | 1.16e-33 | 124 |
| MS.gene86589.t1 | MTR_2g101460 | 47.887 | 142 | 70 | 1 | 50 | 191 | 23 | 160 | 4.07e-33 | 125 |
| MS.gene86589.t1 | MTR_2g101460 | 47.887 | 142 | 70 | 1 | 50 | 191 | 13 | 150 | 5.39e-33 | 124 |
| MS.gene86589.t1 | MTR_6g463250 | 48.507 | 134 | 48 | 2 | 45 | 172 | 41 | 159 | 1.05e-32 | 122 |
| MS.gene86589.t1 | MTR_3g448650 | 46.429 | 112 | 56 | 1 | 50 | 161 | 50 | 157 | 1.15e-26 | 106 |
| MS.gene86589.t1 | MTR_7g446520 | 28.679 | 265 | 159 | 6 | 18 | 275 | 20 | 261 | 7.69e-26 | 108 |
| MS.gene86589.t1 | MTR_1g052260 | 44.231 | 104 | 58 | 0 | 65 | 168 | 55 | 158 | 5.35e-25 | 101 |
| MS.gene86589.t1 | MTR_6g053140 | 34.483 | 174 | 95 | 5 | 26 | 190 | 34 | 197 | 2.27e-22 | 95.5 |
| MS.gene86589.t1 | MTR_4g050510 | 37.795 | 127 | 65 | 1 | 97 | 223 | 89 | 201 | 2.33e-22 | 95.1 |
| MS.gene86589.t1 | MTR_7g028855 | 28.700 | 223 | 151 | 5 | 13 | 229 | 43 | 263 | 5.24e-19 | 89.7 |
| MS.gene86589.t1 | MTR_8g066350 | 33.071 | 127 | 67 | 1 | 65 | 191 | 58 | 166 | 9.80e-17 | 78.2 |
| MS.gene86589.t1 | MTR_0402s0040 | 30.952 | 168 | 108 | 5 | 90 | 255 | 32 | 193 | 1.30e-15 | 79.3 |
| MS.gene86589.t1 | MTR_0604s0020 | 43.243 | 74 | 42 | 0 | 97 | 170 | 3 | 76 | 1.38e-14 | 68.9 |
| MS.gene86589.t1 | MTR_7g446480 | 34.783 | 115 | 73 | 1 | 163 | 275 | 140 | 254 | 5.14e-13 | 70.1 |
| MS.gene86589.t1 | MTR_3g450850 | 29.814 | 161 | 82 | 5 | 92 | 223 | 53 | 211 | 3.71e-12 | 68.2 |
| MS.gene86589.t1 | MTR_7g446510 | 34.783 | 115 | 73 | 1 | 163 | 275 | 155 | 269 | 9.52e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86589.t1 | AT5G28530 | 33.125 | 160 | 103 | 3 | 92 | 248 | 61 | 219 | 4.93e-16 | 81.3 |
| MS.gene86589.t1 | AT5G28530 | 33.125 | 160 | 103 | 3 | 92 | 248 | 61 | 219 | 5.55e-16 | 80.9 |
| MS.gene86589.t1 | AT5G28530 | 33.125 | 160 | 103 | 3 | 92 | 248 | 61 | 219 | 5.84e-16 | 81.3 |
| MS.gene86589.t1 | AT5G28530 | 33.125 | 160 | 103 | 3 | 92 | 248 | 61 | 219 | 6.64e-16 | 80.9 |
| MS.gene86589.t1 | AT5G28530 | 33.125 | 160 | 103 | 3 | 92 | 248 | 61 | 219 | 6.64e-16 | 80.9 |
| MS.gene86589.t1 | AT4G38180 | 28.980 | 245 | 160 | 8 | 90 | 327 | 77 | 314 | 7.01e-16 | 80.9 |
Find 100 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACACCTGGTATCATTTC+TGG | 0.155992 | 6.1:+51231880 | None:intergenic |
| ACACAAATGGTTCACAATAT+TGG | 0.219824 | 6.1:-51230395 | MS.gene86589:CDS |
| CACAAATGGTTCACAATATT+GGG | 0.257023 | 6.1:-51230394 | MS.gene86589:CDS |
| ATTTCAAATGTTCGTGTCTT+AGG | 0.296750 | 6.1:-51230548 | MS.gene86589:CDS |
| GGGAATGCTATAGTCATAAA+TGG | 0.304640 | 6.1:-51232151 | MS.gene86589:CDS |
| CCTGTGTAAAACTAGATTCT+TGG | 0.335728 | 6.1:+51230455 | None:intergenic |
| ATTGCACCATACGTTTGATA+TGG | 0.351243 | 6.1:+51231674 | None:intergenic |
| CCAAGTTCTGAGGGACCGTT+TGG | 0.359223 | 6.1:-51231990 | MS.gene86589:CDS |
| CAATATTAACATCGAGGAAA+TGG | 0.372866 | 6.1:-51232269 | MS.gene86589:CDS |
| CCAAACGGTCCCTCAGAACT+TGG | 0.376804 | 6.1:+51231990 | None:intergenic |
| TTCAGACGAAGGAGATAATA+TGG | 0.381516 | 6.1:-51232239 | MS.gene86589:CDS |
| CTTCCACCAGGCGTAACAAT+TGG | 0.385395 | 6.1:+51230129 | None:intergenic |
| GTTTCAAAGTACTGTGGAAA+TGG | 0.394957 | 6.1:-51230609 | MS.gene86589:CDS |
| CCACACCTGGTATCATTTCT+GGG | 0.408982 | 6.1:+51231881 | None:intergenic |
| AGCGATTCATCCGAGTCTAA+TGG | 0.410491 | 6.1:-51232172 | MS.gene86589:CDS |
| GGGATTCTCAAATTACTTCA+AGG | 0.416997 | 6.1:-51230374 | MS.gene86589:CDS |
| AGTCGTCGACGAAAGTTTAC+TGG | 0.423532 | 6.1:-51230190 | MS.gene86589:CDS |
| TCATGGTATGCAAGGGTAAA+CGG | 0.428944 | 6.1:-51232031 | MS.gene86589:CDS |
| AAGGATTTGTATAATCAATC+AGG | 0.433589 | 6.1:-51231608 | MS.gene86589:CDS |
| GAGATAATATGGATGACAAT+GGG | 0.436783 | 6.1:-51232228 | MS.gene86589:CDS |
| CTGTGTAAAACTAGATTCTT+GGG | 0.438174 | 6.1:+51230456 | None:intergenic |
| CCTACTTGTGTGAGGACTAA+AGG | 0.444636 | 6.1:-51230165 | MS.gene86589:CDS |
| CTACTTGTGTGAGGACTAAA+GGG | 0.449197 | 6.1:-51230164 | MS.gene86589:CDS |
| GCGATTCATCCGAGTCTAAT+GGG | 0.449731 | 6.1:-51232171 | MS.gene86589:CDS |
| TGTCTTAGGATGGAGTCGTT+TGG | 0.452899 | 6.1:-51230534 | MS.gene86589:CDS |
| CACGAACATTTGAAATCTAC+AGG | 0.467229 | 6.1:+51230555 | None:intergenic |
| TGTAGTCAGTGTGGTGTGAT+AGG | 0.474905 | 6.1:-51230090 | MS.gene86589:CDS |
| TATTCAGTTGTCGAAGGATG+TGG | 0.485194 | 6.1:-51230340 | MS.gene86589:CDS |
| CCTTTAGTCCTCACACAAGT+AGG | 0.488782 | 6.1:+51230165 | None:intergenic |
| TTCTCGCTTCCGCCTCTCCA+AGG | 0.489867 | 6.1:+51231904 | None:intergenic |
| GGTGCAATGGCTAATTCATC+AGG | 0.491612 | 6.1:-51231659 | MS.gene86589:CDS |
| TCAATCTCAATCAAATCAGT+TGG | 0.493229 | 6.1:+51231722 | None:intergenic |
| TTGCATATAATTTCTACTCA+TGG | 0.494106 | 6.1:-51232048 | MS.gene86589:CDS |
| AGAGAACAGGGGATTGACCT+TGG | 0.494325 | 6.1:-51231921 | MS.gene86589:CDS |
| TGCGTATAACCACGAGCTGT+TGG | 0.496702 | 6.1:-51231789 | MS.gene86589:CDS |
| CAAATTACTTCAAGGTATGC+GGG | 0.499297 | 6.1:-51230366 | MS.gene86589:CDS |
| GCTTCTGTTGTAGGTTATGG+AGG | 0.499576 | 6.1:-51232323 | MS.gene86589:intron |
| CTAAATTCATCAGATATGAA+TGG | 0.499723 | 6.1:-51232435 | None:intergenic |
| TTGTTACGCCTGGTGGAAGT+AGG | 0.501932 | 6.1:-51230125 | MS.gene86589:CDS |
| GTTATACGCAAATTCAAATA+CGG | 0.516568 | 6.1:+51231802 | None:intergenic |
| CTGTTGGATGGTTTGCTATG+TGG | 0.521362 | 6.1:-51231773 | MS.gene86589:CDS |
| CAAATGTTCGTGTCTTAGGA+TGG | 0.523067 | 6.1:-51230544 | MS.gene86589:CDS |
| GTCGAAGGATGTGGCTGAGA+GGG | 0.529678 | 6.1:-51230331 | MS.gene86589:CDS |
| ATTTCTACTCATGGTATGCA+AGG | 0.531446 | 6.1:-51232039 | MS.gene86589:CDS |
| TCAAATTACTTCAAGGTATG+CGG | 0.532144 | 6.1:-51230367 | MS.gene86589:CDS |
| TAGACATTGTTTCGAAGCGT+TGG | 0.536274 | 6.1:-51231832 | MS.gene86589:CDS |
| CAAGTTCTGAGGGACCGTTT+GGG | 0.542763 | 6.1:-51231989 | MS.gene86589:CDS |
| GGTGTTAGCTTTCTATGTGC+CGG | 0.543539 | 6.1:+51231743 | None:intergenic |
| AAGAATAAAACAACAACTGT+TGG | 0.546824 | 6.1:-51230243 | MS.gene86589:CDS |
| ACTAATCCAATTGTTACGCC+TGG | 0.558263 | 6.1:-51230135 | MS.gene86589:CDS |
| ATTGAAAAGTATAAGAATGT+TGG | 0.559478 | 6.1:-51231704 | MS.gene86589:CDS |
| GCTGCAGAACATTACCCAAA+CGG | 0.563552 | 6.1:+51231975 | None:intergenic |
| TATAACCACGAGCTGTTGGA+TGG | 0.564037 | 6.1:-51231785 | MS.gene86589:CDS |
| TGAAATTCAAGAGATGTCCA+TGG | 0.566346 | 6.1:-51230646 | MS.gene86589:CDS |
| GTTCGAGCAAGATACACAAA+TGG | 0.566756 | 6.1:-51230408 | MS.gene86589:CDS |
| GGAGATAATATGGATGACAA+TGG | 0.571879 | 6.1:-51232229 | MS.gene86589:CDS |
| TCTGTTGTAGGTTATGGAGG+AGG | 0.573234 | 6.1:-51232320 | MS.gene86589:intron |
| TTCGGAAGACCCAAGTTCTG+AGG | 0.573488 | 6.1:-51232000 | MS.gene86589:CDS |
| AATCCAATTGTTACGCCTGG+TGG | 0.574334 | 6.1:-51230132 | MS.gene86589:CDS |
| TTTCTGTAGATGTAGTTGAA+AGG | 0.575027 | 6.1:-51232093 | MS.gene86589:CDS |
| ATATCAAACGTATGGTGCAA+TGG | 0.580935 | 6.1:-51231672 | MS.gene86589:CDS |
| CTTTAGTCCTCACACAAGTA+GGG | 0.582163 | 6.1:+51230166 | None:intergenic |
| CCACACTGACTACATGATTG+AGG | 0.582317 | 6.1:+51230099 | None:intergenic |
| GAGAACCCAGAAATGATACC+AGG | 0.586155 | 6.1:-51231886 | MS.gene86589:CDS |
| GTAAGACCATATCAAACGTA+TGG | 0.586746 | 6.1:-51231680 | MS.gene86589:CDS |
| TTGGTATTGATGCTAGCAGT+GGG | 0.587532 | 6.1:-51230224 | MS.gene86589:CDS |
| AACTTTGTAGATAGAACCCA+TGG | 0.589394 | 6.1:+51230629 | None:intergenic |
| GGGGATTGACCTTGGAGAGG+CGG | 0.591821 | 6.1:-51231913 | MS.gene86589:CDS |
| ATCAGATATGAATGGATGCA+TGG | 0.592737 | 6.1:-51232427 | None:intergenic |
| GCTATAGTCATAAATGGCAT+CGG | 0.596967 | 6.1:-51232145 | MS.gene86589:CDS |
| GTAAAACTAGATTCTTGGGA+AGG | 0.598080 | 6.1:+51230460 | None:intergenic |
| GGGAATTATTCAGTTGTCGA+AGG | 0.603195 | 6.1:-51230346 | MS.gene86589:CDS |
| GAAATTCAAGAGATGTCCAT+GGG | 0.603913 | 6.1:-51230645 | MS.gene86589:CDS |
| GAATGGATGCATGGATGATG+AGG | 0.606403 | 6.1:-51232418 | MS.gene86589:CDS |
| ACAACAATAATATGATCGCA+AGG | 0.609509 | 6.1:+51230507 | None:intergenic |
| TCGGAAGACCCAAGTTCTGA+GGG | 0.617413 | 6.1:-51231999 | MS.gene86589:CDS |
| TTAGTTTCATCTGACTCTTG+CGG | 0.617850 | 6.1:-51231572 | MS.gene86589:CDS |
| CAAACGGTCCCTCAGAACTT+GGG | 0.622569 | 6.1:+51231991 | None:intergenic |
| GCAATGGCTAATTCATCAGG+TGG | 0.625760 | 6.1:-51231656 | MS.gene86589:CDS |
| TACTGGACCCTACTTGTGTG+AGG | 0.626363 | 6.1:-51230173 | MS.gene86589:CDS |
| TTTCTACTCATGGTATGCAA+GGG | 0.627306 | 6.1:-51232038 | MS.gene86589:CDS |
| ATGGACGAAGCTTCAGACGA+AGG | 0.631163 | 6.1:-51232250 | MS.gene86589:CDS |
| TACAAAGTTTCAAAGTACTG+TGG | 0.634037 | 6.1:-51230615 | MS.gene86589:CDS |
| ACTGTGGAAATGGAAGTGTC+TGG | 0.638067 | 6.1:-51230599 | MS.gene86589:CDS |
| TATAGCATTCCCATTAGACT+CGG | 0.641750 | 6.1:+51232162 | None:intergenic |
| GCTTCGAAACAATGTCTATG+TGG | 0.645082 | 6.1:+51231837 | None:intergenic |
| AATGGGGCTAATGAGTGTGA+TGG | 0.645283 | 6.1:-51232211 | MS.gene86589:CDS |
| CCCAGAAATGATACCAGGTG+TGG | 0.648094 | 6.1:-51231881 | MS.gene86589:CDS |
| TGTCGAAGGATGTGGCTGAG+AGG | 0.652941 | 6.1:-51230332 | MS.gene86589:CDS |
| ATAATCAATCAGGAAGACAA+AGG | 0.657924 | 6.1:-51231598 | MS.gene86589:CDS |
| GCAAACCATCCAACAGCTCG+TGG | 0.662133 | 6.1:+51231780 | None:intergenic |
| ACAGGGGATTGACCTTGGAG+AGG | 0.670051 | 6.1:-51231916 | MS.gene86589:CDS |
| TGTGTGAGGACTAAAGGGTG+TGG | 0.670824 | 6.1:-51230159 | MS.gene86589:CDS |
| TGAGGACGCCTACTTCCACC+AGG | 0.673688 | 6.1:+51230117 | None:intergenic |
| AGATAATATGGATGACAATG+GGG | 0.688595 | 6.1:-51232227 | MS.gene86589:CDS |
| CCTCAATCATGTAGTCAGTG+TGG | 0.690892 | 6.1:-51230099 | MS.gene86589:CDS |
| GTTGGTATTGATGCTAGCAG+TGG | 0.710979 | 6.1:-51230225 | MS.gene86589:CDS |
| CACTAAGAAAATCTACAATG+CGG | 0.712293 | 6.1:+51230283 | None:intergenic |
| TAATGACAATATTAACATCG+AGG | 0.732342 | 6.1:-51232275 | MS.gene86589:CDS |
| TGGTATTGATGCTAGCAGTG+GGG | 0.757439 | 6.1:-51230223 | MS.gene86589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAGTAAAAAGTGATTATT+AGG | - | chr6.1:51230104-51230123 | MS.gene86589:CDS | 20.0% |
| !!! | ATTGAAAAGTATAAGAATGT+TGG | - | chr6.1:51230793-51230812 | MS.gene86589:intron | 20.0% |
| !!! | ATTGTATTTGTTTTTCCTAT+AGG | + | chr6.1:51231109-51231128 | None:intergenic | 20.0% |
| !!! | CGTATGAATTATGAAATTTT+TGG | - | chr6.1:51231060-51231079 | MS.gene86589:intron | 20.0% |
| !!! | TTTTGGAAATATACTCTTTA+TGG | + | chr6.1:51231313-51231332 | None:intergenic | 20.0% |
| ! | AAGAATAAAACAACAACTGT+TGG | - | chr6.1:51232254-51232273 | MS.gene86589:CDS | 25.0% |
| ! | AAGGATTTGTATAATCAATC+AGG | - | chr6.1:51230889-51230908 | MS.gene86589:intron | 25.0% |
| ! | ATACTGTAGATAAAGATAAG+AGG | - | chr6.1:51231004-51231023 | MS.gene86589:intron | 25.0% |
| ! | ATATCTTAAAAGATGCATGT+TGG | - | chr6.1:51231407-51231426 | MS.gene86589:intron | 25.0% |
| ! | CAAGGTTTCAAATTTATGAT+TGG | - | chr6.1:51230142-51230161 | MS.gene86589:CDS | 25.0% |
| ! | GAATAAGTTTGAAGAACTAT+GGG | - | chr6.1:51231443-51231462 | MS.gene86589:intron | 25.0% |
| ! | GTATGCAAAAAAAAGAATGT+GGG | - | chr6.1:51231518-51231537 | MS.gene86589:intron | 25.0% |
| ! | GTTATACGCAAATTCAAATA+CGG | + | chr6.1:51230698-51230717 | None:intergenic | 25.0% |
| ! | TAAAATTATGCTTCTGTTGT+AGG | - | chr6.1:51230165-51230184 | MS.gene86589:CDS | 25.0% |
| ! | TAATGACAATATTAACATCG+AGG | - | chr6.1:51230222-51230241 | MS.gene86589:CDS | 25.0% |
| ! | TATCTTAAAAGATGCATGTT+GGG | - | chr6.1:51231408-51231427 | MS.gene86589:intron | 25.0% |
| ! | TGAATAAGTTTGAAGAACTA+TGG | - | chr6.1:51231442-51231461 | MS.gene86589:intron | 25.0% |
| ! | TGTATGCAAAAAAAAGAATG+TGG | - | chr6.1:51231517-51231536 | MS.gene86589:intron | 25.0% |
| ! | TTGCATATAATTTCTACTCA+TGG | - | chr6.1:51230449-51230468 | MS.gene86589:CDS | 25.0% |
| !!! | AAGATTTTTTCAGAGCATTA+CGG | + | chr6.1:51231815-51231834 | None:intergenic | 25.0% |
| !!! | TATTGTTGTTTTGATGTATC+TGG | - | chr6.1:51232004-51232023 | MS.gene86589:CDS | 25.0% |
| !!! | TGAAATTTTTGGTGATGTAT+TGG | - | chr6.1:51231071-51231090 | MS.gene86589:intron | 25.0% |
| AAAAAATCTCCCTTGTAAAC+TGG | + | chr6.1:51231785-51231804 | None:intergenic | 30.0% | |
| ACAACAATAATATGATCGCA+AGG | + | chr6.1:51231993-51232012 | None:intergenic | 30.0% | |
| ACACAAATGGTTCACAATAT+TGG | - | chr6.1:51232102-51232121 | MS.gene86589:CDS | 30.0% | |
| AGATAATATGGATGACAATG+GGG | - | chr6.1:51230270-51230289 | MS.gene86589:CDS | 30.0% | |
| ATAATCAATCAGGAAGACAA+AGG | - | chr6.1:51230899-51230918 | MS.gene86589:intron | 30.0% | |
| ATTTCAAATGTTCGTGTCTT+AGG | - | chr6.1:51231949-51231968 | MS.gene86589:CDS | 30.0% | |
| CAATATTAACATCGAGGAAA+TGG | - | chr6.1:51230228-51230247 | MS.gene86589:CDS | 30.0% | |
| CACAAATGGTTCACAATATT+GGG | - | chr6.1:51232103-51232122 | MS.gene86589:CDS | 30.0% | |
| CACTAAGAAAATCTACAATG+CGG | + | chr6.1:51232217-51232236 | None:intergenic | 30.0% | |
| CTCGAAATCGAAAATATGTA+AGG | + | chr6.1:51231680-51231699 | None:intergenic | 30.0% | |
| CTGTGTAAAACTAGATTCTT+GGG | + | chr6.1:51232044-51232063 | None:intergenic | 30.0% | |
| GAAGAGATGGTTGAAAAATT+TGG | - | chr6.1:51231465-51231484 | MS.gene86589:intron | 30.0% | |
| GAGATAATATGGATGACAAT+GGG | - | chr6.1:51230269-51230288 | MS.gene86589:CDS | 30.0% | |
| TCAAATTACTTCAAGGTATG+CGG | - | chr6.1:51232130-51232149 | MS.gene86589:CDS | 30.0% | |
| TCAATCTCAATCAAATCAGT+TGG | + | chr6.1:51230778-51230797 | None:intergenic | 30.0% | |
| TTGGTTATGATGATTAACAC+CGG | + | chr6.1:51231151-51231170 | None:intergenic | 30.0% | |
| TTTCTGTAGATGTAGTTGAA+AGG | - | chr6.1:51230404-51230423 | MS.gene86589:CDS | 30.0% | |
| ! | AGGTATTTACATTTGAAGCA+AGG | - | chr6.1:51230124-51230143 | MS.gene86589:CDS | 30.0% |
| ! | ATTTTGTCCAGCAATTTCAT+AGG | - | chr6.1:51231652-51231671 | MS.gene86589:CDS | 30.0% |
| ! | CATAATCTATGATGTGCTTT+TGG | + | chr6.1:51231330-51231349 | None:intergenic | 30.0% |
| !! | CAAGTTAGGTTTTGTGAAAA+AGG | - | chr6.1:51230870-51230889 | MS.gene86589:intron | 30.0% |
| !! | CATCGGTGATATTTTAAAGA+TGG | - | chr6.1:51230369-51230388 | MS.gene86589:CDS | 30.0% |
| !! | TACAAAGTTTCAAAGTACTG+TGG | - | chr6.1:51231882-51231901 | MS.gene86589:CDS | 30.0% |
| !!! | ATCAAAGGAGAATTTTTTGC+AGG | - | chr6.1:51231552-51231571 | MS.gene86589:CDS | 30.0% |
| AACATCACCGTCAGTTATTA+CGG | + | chr6.1:51231277-51231296 | None:intergenic | 35.0% | |
| AACTTTGTAGATAGAACCCA+TGG | + | chr6.1:51231871-51231890 | None:intergenic | 35.0% | |
| ACACCGGAGAAAATAACAAA+CGG | + | chr6.1:51231135-51231154 | None:intergenic | 35.0% | |
| AGAGACATATGTTTGGTTGT+TGG | - | chr6.1:51231212-51231231 | MS.gene86589:intron | 35.0% | |
| AGGTTTAGTTATGAGAGAGA+CGG | - | chr6.1:51231188-51231207 | MS.gene86589:intron | 35.0% | |
| ATATCAAACGTATGGTGCAA+TGG | - | chr6.1:51230825-51230844 | MS.gene86589:intron | 35.0% | |
| ATTGCACCATACGTTTGATA+TGG | + | chr6.1:51230826-51230845 | None:intergenic | 35.0% | |
| ATTTCTACTCATGGTATGCA+AGG | - | chr6.1:51230458-51230477 | MS.gene86589:CDS | 35.0% | |
| CAAACTGTTGTCTTTACAAC+AGG | - | chr6.1:51231168-51231187 | MS.gene86589:intron | 35.0% | |
| CAAATTACTTCAAGGTATGC+GGG | - | chr6.1:51232131-51232150 | MS.gene86589:CDS | 35.0% | |
| CACATCATAGATTATGTGCT+TGG | - | chr6.1:51231334-51231353 | MS.gene86589:intron | 35.0% | |
| CCTGTGTAAAACTAGATTCT+TGG | + | chr6.1:51232045-51232064 | None:intergenic | 35.0% | |
| CCTTTATCCGTAATAACTGA+CGG | - | chr6.1:51231267-51231286 | MS.gene86589:intron | 35.0% | |
| CTGTTGTAAAGACAACAGTT+TGG | + | chr6.1:51231170-51231189 | None:intergenic | 35.0% | |
| GAAATTCAAGAGATGTCCAT+GGG | - | chr6.1:51231852-51231871 | MS.gene86589:CDS | 35.0% | |
| GCTATAGTCATAAATGGCAT+CGG | - | chr6.1:51230352-51230371 | MS.gene86589:CDS | 35.0% | |
| GGAGATAATATGGATGACAA+TGG | - | chr6.1:51230268-51230287 | MS.gene86589:CDS | 35.0% | |
| GGGAATGCTATAGTCATAAA+TGG | - | chr6.1:51230346-51230365 | MS.gene86589:CDS | 35.0% | |
| GGGATTCTCAAATTACTTCA+AGG | - | chr6.1:51232123-51232142 | MS.gene86589:CDS | 35.0% | |
| GTAAAACTAGATTCTTGGGA+AGG | + | chr6.1:51232040-51232059 | None:intergenic | 35.0% | |
| GTAAGACCATATCAAACGTA+TGG | - | chr6.1:51230817-51230836 | MS.gene86589:intron | 35.0% | |
| TATAGCATTCCCATTAGACT+CGG | + | chr6.1:51230338-51230357 | None:intergenic | 35.0% | |
| TATGCTTCTGTTGTAGGTTA+TGG | - | chr6.1:51230171-51230190 | MS.gene86589:CDS | 35.0% | |
| TCTGACTATCATTCCAACTA+TGG | - | chr6.1:51231708-51231727 | MS.gene86589:CDS | 35.0% | |
| TGAAATTCAAGAGATGTCCA+TGG | - | chr6.1:51231851-51231870 | MS.gene86589:CDS | 35.0% | |
| TTAGTTTCATCTGACTCTTG+CGG | - | chr6.1:51230925-51230944 | MS.gene86589:intron | 35.0% | |
| TTCAGACGAAGGAGATAATA+TGG | - | chr6.1:51230258-51230277 | MS.gene86589:CDS | 35.0% | |
| TTTCCTATAGGTTGCATCAA+AGG | + | chr6.1:51231097-51231116 | None:intergenic | 35.0% | |
| TTTCTACTCATGGTATGCAA+GGG | - | chr6.1:51230459-51230478 | MS.gene86589:CDS | 35.0% | |
| ! | CACGAACATTTGAAATCTAC+AGG | + | chr6.1:51231945-51231964 | None:intergenic | 35.0% |
| ! | TCGCAAACTAGTTTGCAATA+CGG | + | chr6.1:51231739-51231758 | None:intergenic | 35.0% |
| !! | AGCAAACTTTTGTTTGTTCG+CGG | - | chr6.1:51230542-51230561 | MS.gene86589:CDS | 35.0% |
| !! | GTTTCAAAGTACTGTGGAAA+TGG | - | chr6.1:51231888-51231907 | MS.gene86589:CDS | 35.0% |
| !! | TTCTTAGTGCTGAACTTTTG+AGG | - | chr6.1:51232228-51232247 | MS.gene86589:CDS | 35.0% |
| !! | TTTGCTATGTGGTCTTTTAC+CGG | - | chr6.1:51230735-51230754 | MS.gene86589:intron | 35.0% |
| !! | TTTTCAGAGCATTACGGAAA+AGG | + | chr6.1:51231809-51231828 | None:intergenic | 35.0% |
| !!! | AGAATCTAGTTTTACACAGG+TGG | - | chr6.1:51232045-51232064 | MS.gene86589:CDS | 35.0% |
| !!! | CCAAGAATCTAGTTTTACAC+AGG | - | chr6.1:51232042-51232061 | MS.gene86589:CDS | 35.0% |
| AAGATGCATGTTGGGTGATA+TGG | - | chr6.1:51231416-51231435 | MS.gene86589:intron | 40.0% | |
| ACTAATCCAATTGTTACGCC+TGG | - | chr6.1:51232362-51232381 | MS.gene86589:intron | 40.0% | |
| AGACGGAAGAGACATATGTT+TGG | - | chr6.1:51231205-51231224 | MS.gene86589:intron | 40.0% | |
| CAAATGTTCGTGTCTTAGGA+TGG | - | chr6.1:51231953-51231972 | MS.gene86589:CDS | 40.0% | |
| CACCGGAGAAAATAACAAAC+GGG | + | chr6.1:51231134-51231153 | None:intergenic | 40.0% | |
| CCGTCAGTTATTACGGATAA+AGG | + | chr6.1:51231270-51231289 | None:intergenic | 40.0% | |
| CTACTTGTGTGAGGACTAAA+GGG | - | chr6.1:51232333-51232352 | MS.gene86589:intron | 40.0% | |
| CTTTAGTCCTCACACAAGTA+GGG | + | chr6.1:51232334-51232353 | None:intergenic | 40.0% | |
| GAGGGTTTACATAGTCACAT+AGG | - | chr6.1:51231597-51231616 | MS.gene86589:CDS | 40.0% | |
| GCTTCGAAACAATGTCTATG+TGG | + | chr6.1:51230663-51230682 | None:intergenic | 40.0% | |
| GGAATGCATCATCGAATGTT+GGG | - | chr6.1:51231367-51231386 | MS.gene86589:intron | 40.0% | |
| GGGAATTATTCAGTTGTCGA+AGG | - | chr6.1:51232151-51232170 | MS.gene86589:CDS | 40.0% | |
| GTTCGAGCAAGATACACAAA+TGG | - | chr6.1:51232089-51232108 | MS.gene86589:CDS | 40.0% | |
| TAGACATTGTTTCGAAGCGT+TGG | - | chr6.1:51230665-51230684 | MS.gene86589:intron | 40.0% | |
| TATGTGCTTGGCATCTTCTA+CGG | - | chr6.1:51231346-51231365 | MS.gene86589:intron | 40.0% | |
| TATTCAGTTGTCGAAGGATG+TGG | - | chr6.1:51232157-51232176 | MS.gene86589:CDS | 40.0% | |
| TCATGGTATGCAAGGGTAAA+CGG | - | chr6.1:51230466-51230485 | MS.gene86589:CDS | 40.0% | |
| TGAAGAACTATGGGAAGAGA+TGG | - | chr6.1:51231452-51231471 | MS.gene86589:intron | 40.0% | |
| TGATCCAATTGTTGTCTTGC+AGG | + | chr6.1:51231491-51231510 | None:intergenic | 40.0% | |
| ! | AGCATCGAACCAGTTTACAA+GGG | - | chr6.1:51231773-51231792 | MS.gene86589:CDS | 40.0% |
| ! | CGCAAACTAGTTTGCAATAC+GGG | + | chr6.1:51231738-51231757 | None:intergenic | 40.0% |
| ! | TAAGGCACCTATGAAATTGC+TGG | + | chr6.1:51231662-51231681 | None:intergenic | 40.0% |
| ! | TCAGGTGGTTTTCACAAGTT+AGG | - | chr6.1:51230856-51230875 | MS.gene86589:intron | 40.0% |
| !! | GCAAACTTTTGTTTGTTCGC+GGG | - | chr6.1:51230543-51230562 | MS.gene86589:CDS | 40.0% |
| !! | GGGTAAACGGATTTTCTGTT+CGG | - | chr6.1:51230479-51230498 | MS.gene86589:CDS | 40.0% |
| !! | TTGGTATTGATGCTAGCAGT+GGG | - | chr6.1:51232273-51232292 | MS.gene86589:CDS | 40.0% |
| !!! | AGAGGCTTGAACGTCTTTTT+TGG | - | chr6.1:51231022-51231041 | MS.gene86589:intron | 40.0% |
| !!! | GAACGTCTTTTTTGGTGTGA+TGG | - | chr6.1:51231030-51231049 | MS.gene86589:intron | 40.0% |
| !!! | GAAGGTTTTAGAGAGAACAG+GGG | - | chr6.1:51230565-51230584 | MS.gene86589:CDS | 40.0% |
| !!! | GGAAGGTTTTAGAGAGAACA+GGG | - | chr6.1:51230564-51230583 | MS.gene86589:CDS | 40.0% |
| !!! | TGCCCGTTTGTTATTTTCTC+CGG | - | chr6.1:51231129-51231148 | MS.gene86589:intron | 40.0% |
| AATCCAATTGTTACGCCTGG+TGG | - | chr6.1:51232365-51232384 | MS.gene86589:intron | 45.0% | |
| AATGGGGCTAATGAGTGTGA+TGG | - | chr6.1:51230286-51230305 | MS.gene86589:CDS | 45.0% | |
| AGCGATTCATCCGAGTCTAA+TGG | - | chr6.1:51230325-51230344 | MS.gene86589:CDS | 45.0% | |
| AGTCGTCGACGAAAGTTTAC+TGG | - | chr6.1:51232307-51232326 | MS.gene86589:CDS | 45.0% | |
| ATGCATGTTGGGTGATATGG+AGG | - | chr6.1:51231419-51231438 | MS.gene86589:intron | 45.0% | |
| CAATTCGCGACTGCTATGAA+TGG | - | chr6.1:51231237-51231256 | MS.gene86589:intron | 45.0% | |
| CATTCATAGCAGTCGCGAAT+TGG | + | chr6.1:51231239-51231258 | None:intergenic | 45.0% | |
| CCACACCTGGTATCATTTCT+GGG | + | chr6.1:51230619-51230638 | None:intergenic | 45.0% | |
| CCTACTTGTGTGAGGACTAA+AGG | - | chr6.1:51232332-51232351 | MS.gene86589:intron | 45.0% | |
| CCTCAATCATGTAGTCAGTG+TGG | - | chr6.1:51232398-51232417 | MS.gene86589:intron | 45.0% | |
| CCTTTAGTCCTCACACAAGT+AGG | + | chr6.1:51232335-51232354 | None:intergenic | 45.0% | |
| CGGAATGCATCATCGAATGT+TGG | - | chr6.1:51231366-51231385 | MS.gene86589:intron | 45.0% | |
| GAATGGATGCATGGATGATG+AGG | - | chr6.1:51230079-51230098 | MS.gene86589:CDS | 45.0% | |
| GAGAACCCAGAAATGATACC+AGG | - | chr6.1:51230611-51230630 | MS.gene86589:CDS | 45.0% | |
| GCAATGGCTAATTCATCAGG+TGG | - | chr6.1:51230841-51230860 | MS.gene86589:intron | 45.0% | |
| GCGATTCATCCGAGTCTAAT+GGG | - | chr6.1:51230326-51230345 | MS.gene86589:CDS | 45.0% | |
| GCTGCAGAACATTACCCAAA+CGG | + | chr6.1:51230525-51230544 | None:intergenic | 45.0% | |
| GCTTCTGTTGTAGGTTATGG+AGG | - | chr6.1:51230174-51230193 | MS.gene86589:CDS | 45.0% | |
| GGTGCAATGGCTAATTCATC+AGG | - | chr6.1:51230838-51230857 | MS.gene86589:intron | 45.0% | |
| TATAACCACGAGCTGTTGGA+TGG | - | chr6.1:51230712-51230731 | MS.gene86589:intron | 45.0% | |
| TCCACACCTGGTATCATTTC+TGG | + | chr6.1:51230620-51230639 | None:intergenic | 45.0% | |
| TCTGTTGTAGGTTATGGAGG+AGG | - | chr6.1:51230177-51230196 | MS.gene86589:CDS | 45.0% | |
| TGGCCTTTGATGCAACCTAT+AGG | - | chr6.1:51231091-51231110 | MS.gene86589:intron | 45.0% | |
| TGTAGTCAGTGTGGTGTGAT+AGG | - | chr6.1:51232407-51232426 | MS.gene86589:intron | 45.0% | |
| TGTCTTAGGATGGAGTCGTT+TGG | - | chr6.1:51231963-51231982 | MS.gene86589:CDS | 45.0% | |
| TTGGCCTGCAAGACAACAAT+TGG | - | chr6.1:51231484-51231503 | MS.gene86589:intron | 45.0% | |
| ! | CAATACGGGTTGACCATAGT+TGG | + | chr6.1:51231724-51231743 | None:intergenic | 45.0% |
| ! | CAGCATCGAACCAGTTTACA+AGG | - | chr6.1:51231772-51231791 | MS.gene86589:CDS | 45.0% |
| ! | CCACACTGACTACATGATTG+AGG | + | chr6.1:51232401-51232420 | None:intergenic | 45.0% |
| ! | TTTTGCAGAACATCCACACC+TGG | + | chr6.1:51230632-51230651 | None:intergenic | 45.0% |
| !! | ACTGTGGAAATGGAAGTGTC+TGG | - | chr6.1:51231898-51231917 | MS.gene86589:CDS | 45.0% |
| !! | ACTTTTGTTTGTTCGCGGGA+AGG | - | chr6.1:51230547-51230566 | MS.gene86589:CDS | 45.0% |
| !! | CTGTTGGATGGTTTGCTATG+TGG | - | chr6.1:51230724-51230743 | MS.gene86589:intron | 45.0% |
| !! | GGTGTTAGCTTTCTATGTGC+CGG | + | chr6.1:51230757-51230776 | None:intergenic | 45.0% |
| !! | GTTGGTATTGATGCTAGCAG+TGG | - | chr6.1:51232272-51232291 | MS.gene86589:CDS | 45.0% |
| !! | TGGTATTGATGCTAGCAGTG+GGG | - | chr6.1:51232274-51232293 | MS.gene86589:CDS | 45.0% |
| !!! | GGGAAGGTTTTAGAGAGAAC+AGG | - | chr6.1:51230563-51230582 | MS.gene86589:CDS | 45.0% |
| AGAGAACAGGGGATTGACCT+TGG | - | chr6.1:51230576-51230595 | MS.gene86589:CDS | 50.0% | |
| ATGGACGAAGCTTCAGACGA+AGG | - | chr6.1:51230247-51230266 | MS.gene86589:CDS | 50.0% | |
| CAAACGGTCCCTCAGAACTT+GGG | + | chr6.1:51230509-51230528 | None:intergenic | 50.0% | |
| CAGGTATACGAACCACGTCT+CGG | - | chr6.1:51231571-51231590 | MS.gene86589:CDS | 50.0% | |
| CCCAGAAATGATACCAGGTG+TGG | - | chr6.1:51230616-51230635 | MS.gene86589:CDS | 50.0% | |
| CGCGACTGCTATGAATGGTA+AGG | - | chr6.1:51231242-51231261 | MS.gene86589:intron | 50.0% | |
| CTTCCACCAGGCGTAACAAT+TGG | + | chr6.1:51232371-51232390 | None:intergenic | 50.0% | |
| TACTGGACCCTACTTGTGTG+AGG | - | chr6.1:51232324-51232343 | MS.gene86589:intron | 50.0% | |
| TGCGTATAACCACGAGCTGT+TGG | - | chr6.1:51230708-51230727 | MS.gene86589:intron | 50.0% | |
| TGGGCGACTGCTCATATCAA+AGG | - | chr6.1:51231537-51231556 | MS.gene86589:CDS | 50.0% | |
| TGTGTGAGGACTAAAGGGTG+TGG | - | chr6.1:51232338-51232357 | MS.gene86589:intron | 50.0% | |
| TTCGGAAGACCCAAGTTCTG+AGG | - | chr6.1:51230497-51230516 | MS.gene86589:CDS | 50.0% | |
| TTGTTACGCCTGGTGGAAGT+AGG | - | chr6.1:51232372-51232391 | MS.gene86589:intron | 50.0% | |
| ! | TCGGAAGACCCAAGTTCTGA+GGG | - | chr6.1:51230498-51230517 | MS.gene86589:CDS | 50.0% |
| !! | CAAGTTCTGAGGGACCGTTT+GGG | - | chr6.1:51230508-51230527 | MS.gene86589:CDS | 50.0% |
| ACAGGGGATTGACCTTGGAG+AGG | - | chr6.1:51230581-51230600 | MS.gene86589:CDS | 55.0% | |
| CCAAACGGTCCCTCAGAACT+TGG | + | chr6.1:51230510-51230529 | None:intergenic | 55.0% | |
| GCAAACCATCCAACAGCTCG+TGG | + | chr6.1:51230720-51230739 | None:intergenic | 55.0% | |
| GTCGAAGGATGTGGCTGAGA+GGG | - | chr6.1:51232166-51232185 | MS.gene86589:CDS | 55.0% | |
| TAAACCCTCACACCGAGACG+TGG | + | chr6.1:51231586-51231605 | None:intergenic | 55.0% | |
| TGTCGAAGGATGTGGCTGAG+AGG | - | chr6.1:51232165-51232184 | MS.gene86589:CDS | 55.0% | |
| !! | CCAAGTTCTGAGGGACCGTT+TGG | - | chr6.1:51230507-51230526 | MS.gene86589:CDS | 55.0% |
| GGGGATTGACCTTGGAGAGG+CGG | - | chr6.1:51230584-51230603 | MS.gene86589:CDS | 60.0% | |
| TGAGGACGCCTACTTCCACC+AGG | + | chr6.1:51232383-51232402 | None:intergenic | 60.0% | |
| TTCTCGCTTCCGCCTCTCCA+AGG | + | chr6.1:51230596-51230615 | None:intergenic | 60.0% | |
| ! | ACGAACCACGTCTCGGTGTG+AGG | - | chr6.1:51231578-51231597 | MS.gene86589:CDS | 60.0% |
| ! | CGAACCACGTCTCGGTGTGA+GGG | - | chr6.1:51231579-51231598 | MS.gene86589:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 51230077 | 51232442 | 51230077 | ID=MS.gene86589 |
| chr6.1 | mRNA | 51230077 | 51232442 | 51230077 | ID=MS.gene86589.t1;Parent=MS.gene86589 |
| chr6.1 | exon | 51232416 | 51232442 | 51232416 | ID=MS.gene86589.t1.exon1;Parent=MS.gene86589.t1 |
| chr6.1 | CDS | 51232416 | 51232442 | 51232416 | ID=cds.MS.gene86589.t1;Parent=MS.gene86589.t1 |
| chr6.1 | exon | 51231527 | 51232332 | 51231527 | ID=MS.gene86589.t1.exon2;Parent=MS.gene86589.t1 |
| chr6.1 | CDS | 51231527 | 51232332 | 51231527 | ID=cds.MS.gene86589.t1;Parent=MS.gene86589.t1 |
| chr6.1 | exon | 51230077 | 51230674 | 51230077 | ID=MS.gene86589.t1.exon3;Parent=MS.gene86589.t1 |
| chr6.1 | CDS | 51230077 | 51230674 | 51230077 | ID=cds.MS.gene86589.t1;Parent=MS.gene86589.t1 |
| Gene Sequence |
| Protein sequence |
