Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86621.t1 | XP_013441872.2 | 58 | 576 | 67 | 7 | 1 | 405 | 1 | 572 | 9.60E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86621.t1 | Q940D0 | 48.8 | 86 | 26 | 4 | 74 | 147 | 245 | 324 | 9.7e-10 | 66.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86621.t1 | A0A396HLS9 | 62.2 | 328 | 56 | 6 | 60 | 319 | 89 | 416 | 2.6e-56 | 229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene86621.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86621.t1 | MTR_0450s0040 | 65.385 | 182 | 37 | 2 | 60 | 215 | 163 | 344 | 7.61e-68 | 219 |
| MS.gene86621.t1 | MTR_0450s0040 | 57.051 | 156 | 61 | 3 | 1 | 153 | 1 | 153 | 6.41e-48 | 167 |
| MS.gene86621.t1 | MTR_7g026400 | 67.105 | 76 | 25 | 0 | 80 | 155 | 176 | 251 | 3.51e-25 | 108 |
| MS.gene86621.t1 | MTR_7g026400 | 61.111 | 54 | 21 | 0 | 31 | 84 | 14 | 67 | 1.27e-15 | 79.3 |
| MS.gene86621.t1 | MTR_7g026400 | 41.270 | 126 | 61 | 5 | 179 | 293 | 331 | 454 | 3.98e-11 | 65.5 |
| MS.gene86621.t1 | MTR_6g089040 | 76.923 | 52 | 12 | 0 | 33 | 84 | 5 | 56 | 1.36e-20 | 85.5 |
| MS.gene86621.t1 | MTR_6g088950 | 41.176 | 136 | 63 | 4 | 18 | 139 | 7 | 139 | 5.08e-19 | 85.5 |
| MS.gene86621.t1 | MTR_6g088960 | 68.000 | 50 | 16 | 0 | 35 | 84 | 27 | 76 | 7.83e-16 | 72.4 |
| MS.gene86621.t1 | MTR_4g121020 | 50.746 | 67 | 22 | 2 | 74 | 135 | 119 | 179 | 4.27e-11 | 65.1 |
| MS.gene86621.t1 | MTR_4g121020 | 50.746 | 67 | 22 | 2 | 74 | 135 | 223 | 283 | 5.18e-11 | 65.1 |
| MS.gene86621.t1 | MTR_4g121020 | 50.746 | 67 | 22 | 2 | 74 | 135 | 223 | 283 | 5.19e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86621.t1 | AT3G16857 | 48.837 | 86 | 26 | 4 | 74 | 147 | 175 | 254 | 3.24e-12 | 68.9 |
| MS.gene86621.t1 | AT3G16857 | 48.837 | 86 | 26 | 4 | 74 | 147 | 245 | 324 | 3.57e-12 | 68.6 |
| MS.gene86621.t1 | AT3G16857 | 48.837 | 86 | 26 | 4 | 74 | 147 | 245 | 324 | 4.04e-12 | 68.6 |
| MS.gene86621.t1 | AT5G07210 | 44.595 | 74 | 36 | 1 | 69 | 137 | 233 | 306 | 9.13e-12 | 67.4 |
| MS.gene86621.t1 | AT5G07210 | 44.595 | 74 | 36 | 1 | 69 | 137 | 225 | 298 | 9.22e-12 | 67.4 |
| MS.gene86621.t1 | AT2G27070 | 59.615 | 52 | 21 | 0 | 86 | 137 | 250 | 301 | 4.29e-11 | 65.1 |
Find 75 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGTGAGTTTCATATATT+TGG | 0.074139 | 6.1:-50193781 | MS.gene86621:CDS |
| CCATATAGCTTTGGGTTTAA+TGG | 0.190557 | 6.1:-50192029 | MS.gene86621:CDS |
| TTGTTCAATCATTTCAATTA+TGG | 0.195385 | 6.1:-50192146 | MS.gene86621:CDS |
| TTAACAAGGAACTTAAAATT+TGG | 0.202387 | 6.1:-50192209 | MS.gene86621:CDS |
| ACTCATCATGAATTTGCTTT+TGG | 0.220249 | 6.1:+50193740 | None:intergenic |
| GAATTTGATATGGATCTTAT+TGG | 0.253348 | 6.1:-50191095 | MS.gene86621:CDS |
| GAATTTGATATGGATCTTAT+TGG | 0.253348 | 6.1:-50191125 | MS.gene86621:CDS |
| ATTTCATTGATGACAGAAAT+TGG | 0.261013 | 6.1:+50192440 | None:intergenic |
| GAGTTTCAACTACCTGTTAT+AGG | 0.278582 | 6.1:-50193721 | MS.gene86621:intron |
| CCAATGAGACTTGCCTGATT+AGG | 0.294478 | 6.1:+50191370 | None:intergenic |
| AATAATGCAGGAATTTGATA+TGG | 0.300210 | 6.1:-50191135 | MS.gene86621:intron |
| AAATGTATCCAGTCATTTAC+AGG | 0.301898 | 6.1:-50192992 | MS.gene86621:intron |
| CAGATCTAACATGCAAGTTT+TGG | 0.302906 | 6.1:-50195480 | MS.gene86621:CDS |
| GTAGAAGCGACATCATAAAA+TGG | 0.305371 | 6.1:+50192296 | None:intergenic |
| CAATGAGACTTGCCTGATTA+GGG | 0.309521 | 6.1:+50191371 | None:intergenic |
| TGGAGATCAGGAATTTGATA+TGG | 0.318761 | 6.1:-50191105 | MS.gene86621:CDS |
| CCATTAAACCCAAAGCTATA+TGG | 0.320064 | 6.1:+50192029 | None:intergenic |
| TTTCATATATTTGGAATGAA+TGG | 0.333235 | 6.1:-50193772 | MS.gene86621:CDS |
| ATGTTATTCCATATAGCTTT+GGG | 0.337073 | 6.1:-50192037 | MS.gene86621:CDS |
| CATCTTGATAGAAATTAAAT+AGG | 0.356862 | 6.1:+50191664 | None:intergenic |
| TCAATTATGGTGTGAAGAAC+TGG | 0.359272 | 6.1:-50192133 | MS.gene86621:CDS |
| AATGTTATTCCATATAGCTT+TGG | 0.374067 | 6.1:-50192038 | MS.gene86621:CDS |
| GTAAATGTTTCTGAGAATAG+AGG | 0.388331 | 6.1:-50192005 | MS.gene86621:CDS |
| GGACCATGATGACGAGTCTT+TGG | 0.388380 | 6.1:-50195453 | MS.gene86621:CDS |
| GAATGCTACTTCCGTCAATA+AGG | 0.388592 | 6.1:-50191949 | MS.gene86621:CDS |
| GGAACAGGAACTACGAATAA+AGG | 0.399758 | 6.1:-50192071 | MS.gene86621:CDS |
| CAAAGCATGGTGAGCATCCT+TGG | 0.404636 | 6.1:+50193843 | None:intergenic |
| AAATGATATTTACCTATAAC+AGG | 0.408467 | 6.1:+50193709 | None:intergenic |
| TTCTAATCAAAACCCTAATC+AGG | 0.429381 | 6.1:-50191383 | MS.gene86621:intron |
| CTTATCCAGTTACATAAAGA+TGG | 0.432143 | 6.1:-50191466 | MS.gene86621:intron |
| TATGGATCTTATTGGAGATC+AGG | 0.439612 | 6.1:-50191117 | MS.gene86621:CDS |
| CCGTCATATGGAGGAAGAAA+AGG | 0.455186 | 6.1:-50192266 | MS.gene86621:CDS |
| CAAGGATGCTCACCATGCTT+TGG | 0.455806 | 6.1:-50193842 | MS.gene86621:CDS |
| TGTTGTGCCAAAGAAAATCT+TGG | 0.455958 | 6.1:-50193046 | MS.gene86621:CDS |
| TCTACCAGCTATCCGTCATA+TGG | 0.457430 | 6.1:-50192278 | MS.gene86621:CDS |
| AAGTTCCTTGTTAAGAAACT+TGG | 0.471132 | 6.1:+50192218 | None:intergenic |
| AGATCAACAGAAGTGGGAAC+AGG | 0.481464 | 6.1:-50192086 | MS.gene86621:CDS |
| TACCGACATCATAGTATAGT+TGG | 0.481804 | 6.1:-50192176 | MS.gene86621:CDS |
| TGACGAGTCTTTGGCATCAC+TGG | 0.484509 | 6.1:-50195444 | MS.gene86621:CDS |
| GATAATATCGATCCTCAAGC+TGG | 0.486637 | 6.1:-50191442 | MS.gene86621:CDS |
| GTTGAAATCAGCCTTATTGA+CGG | 0.487701 | 6.1:+50191938 | None:intergenic |
| TTTAAATTCAAAATTTGCAT+CGG | 0.496051 | 6.1:-50192468 | MS.gene86621:CDS |
| AAGTACATCAGCTACTGGTC+AGG | 0.502651 | 6.1:-50191266 | MS.gene86621:CDS |
| TAGAAGCGACATCATAAAAT+GGG | 0.505067 | 6.1:+50192297 | None:intergenic |
| AAGTACATCAGCAAATGATC+AGG | 0.511132 | 6.1:-50191242 | MS.gene86621:CDS |
| TGCACAACATTACCTTCTCA+AGG | 0.519201 | 6.1:+50191634 | None:intergenic |
| TCCTCCATATGACGGATAGC+TGG | 0.529760 | 6.1:+50192274 | None:intergenic |
| TGAATGTTCCAAACCTAACA+AGG | 0.533568 | 6.1:-50193017 | MS.gene86621:CDS |
| CAGGCAAGTACATCAGCTAC+TGG | 0.536285 | 6.1:-50191271 | MS.gene86621:CDS |
| TGGAGGAAGAAAAGGAATGA+TGG | 0.540522 | 6.1:-50192258 | MS.gene86621:CDS |
| ATGCCAAAGACTCGTCATCA+TGG | 0.549394 | 6.1:+50195450 | None:intergenic |
| TAAATGTTTCTGAGAATAGA+GGG | 0.551447 | 6.1:-50192004 | MS.gene86621:CDS |
| ATACAAGAGAAAGGAATGGA+AGG | 0.552317 | 6.1:-50192509 | MS.gene86621:CDS |
| CAAGAGAAAGGAATGGAAGG+AGG | 0.555993 | 6.1:-50192506 | MS.gene86621:CDS |
| GCACAACATTACCTTCTCAA+GGG | 0.560791 | 6.1:+50191635 | None:intergenic |
| ATCACTGGCTAATATACTCA+TGG | 0.566664 | 6.1:-50195429 | MS.gene86621:CDS |
| CAAGAATAGATCAACAGAAG+TGG | 0.568819 | 6.1:-50192093 | MS.gene86621:CDS |
| AAGAATAGATCAACAGAAGT+GGG | 0.573718 | 6.1:-50192092 | MS.gene86621:CDS |
| AATCAGAACAATGATGCAAG+TGG | 0.574896 | 6.1:-50191702 | MS.gene86621:CDS |
| TGTCACCAAGTTTCTTAACA+AGG | 0.582278 | 6.1:-50192223 | MS.gene86621:CDS |
| CACAACATTACCTTCTCAAG+GGG | 0.586024 | 6.1:+50191636 | None:intergenic |
| GATTCATCTGCATAAATCAA+AGG | 0.587541 | 6.1:-50191982 | MS.gene86621:CDS |
| AAATATACAAGAGAAAGGAA+TGG | 0.592304 | 6.1:-50192513 | MS.gene86621:CDS |
| GAGGATGAGATTCCAGCTTG+AGG | 0.597917 | 6.1:+50191430 | None:intergenic |
| AGATGTGCAACCCCTTGAGA+AGG | 0.604507 | 6.1:-50191646 | MS.gene86621:intron |
| CTCGAAGAGTGACCAAAGCA+TGG | 0.605583 | 6.1:+50193830 | None:intergenic |
| GGTGTGAAGAACTGGAGCGT+TGG | 0.621741 | 6.1:-50192125 | MS.gene86621:CDS |
| TTCCAACTATACTATGATGT+CGG | 0.631257 | 6.1:+50192174 | None:intergenic |
| ACCAGCTATCCGTCATATGG+AGG | 0.633285 | 6.1:-50192275 | MS.gene86621:CDS |
| TGGCTAATATACTCATGGCA+TGG | 0.635039 | 6.1:-50195424 | MS.gene86621:CDS |
| GAATGTTCCAAACCTAACAA+GGG | 0.643998 | 6.1:-50193016 | MS.gene86621:CDS |
| TAAGGCTGATTTCAACAATG+AGG | 0.645850 | 6.1:-50191931 | MS.gene86621:intron |
| CAGGAACTACGAATAAAGGA+AGG | 0.649263 | 6.1:-50192067 | MS.gene86621:CDS |
| CTCATGGCATGGCAATACAA+AGG | 0.657436 | 6.1:-50195413 | MS.gene86621:intron |
| TGGTGACTCGTTCAACACAG+AGG | 0.723519 | 6.1:+50191411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACCAAATAAAAAAAATT+AGG | + | chr6.1:50192692-50192711 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAATAATTGCA+AGG | + | chr6.1:50192937-50192956 | None:intergenic | 10.0% |
| !! | TATATAAAATGGAAAATTTA+AGG | + | chr6.1:50193801-50193820 | None:intergenic | 10.0% |
| !!! | AATAAATAGTTTATTTTTCT+TGG | + | chr6.1:50193194-50193213 | None:intergenic | 10.0% |
| !!! | ATATGTTAGTTATTTTTTTA+GGG | - | chr6.1:50192286-50192305 | MS.gene86621:CDS | 10.0% |
| !!! | ATATTTAACAAATCATTTTA+GGG | + | chr6.1:50192249-50192268 | None:intergenic | 10.0% |
| !!! | ATTTTTATAGAAAATTATTG+TGG | + | chr6.1:50194696-50194715 | None:intergenic | 10.0% |
| !!! | TATATGTTAGTTATTTTTTT+AGG | - | chr6.1:50192285-50192304 | MS.gene86621:CDS | 10.0% |
| !!! | TATATTTAACAAATCATTTT+AGG | + | chr6.1:50192250-50192269 | None:intergenic | 10.0% |
| !! | AAAATATGTTATTATCCAAA+AGG | - | chr6.1:50195049-50195068 | MS.gene86621:intron | 15.0% |
| !! | GTAACATTGAAAAAAAATTA+TGG | + | chr6.1:50194823-50194842 | None:intergenic | 15.0% |
| !! | TTATATTTAATTAAGTAGTC+TGG | + | chr6.1:50192090-50192109 | None:intergenic | 15.0% |
| !! | TTTAAATTCAAAATTTGCAT+CGG | - | chr6.1:50194105-50194124 | MS.gene86621:intron | 15.0% |
| !!! | AATTAGACTTATTTTTTAGT+TGG | + | chr6.1:50192897-50192916 | None:intergenic | 15.0% |
| !!! | ATGACCTAATTTTTTTTATT+TGG | - | chr6.1:50192685-50192704 | MS.gene86621:intron | 15.0% |
| !!! | TATGTTAGTTATTTTTTTAG+GGG | - | chr6.1:50192287-50192306 | MS.gene86621:CDS | 15.0% |
| !!! | TTTTAACTTAAATTACTGAA+TGG | + | chr6.1:50192613-50192632 | None:intergenic | 15.0% |
| !! | AAACCAATCCTTAAAATAAA+GGG | + | chr6.1:50191694-50191713 | None:intergenic | 20.0% |
| !! | AAAGTAATTCAATTATGTGA+TGG | + | chr6.1:50191208-50191227 | None:intergenic | 20.0% |
| !! | AAATGATATTTACCTATAAC+AGG | + | chr6.1:50192867-50192886 | None:intergenic | 20.0% |
| !! | AGATATTCTAAATATTGTTG+AGG | - | chr6.1:50193718-50193737 | MS.gene86621:intron | 20.0% |
| !! | ATTAAAATACCACAATTGAA+AGG | + | chr6.1:50191419-50191438 | None:intergenic | 20.0% |
| !! | ATTAGGCTTCATAAAAAAAA+AGG | + | chr6.1:50193682-50193701 | None:intergenic | 20.0% |
| !! | CATCTTGATAGAAATTAAAT+AGG | + | chr6.1:50194912-50194931 | None:intergenic | 20.0% |
| !! | GTTATGGTCTATATATAAAA+TGG | + | chr6.1:50193812-50193831 | None:intergenic | 20.0% |
| !! | TAAACCAATCCTTAAAATAA+AGG | + | chr6.1:50191695-50191714 | None:intergenic | 20.0% |
| !! | TACCATATTTATAATAATGC+AGG | - | chr6.1:50195426-50195445 | MS.gene86621:CDS | 20.0% |
| !! | TACCTTCAAAAAATTTCATT+AGG | + | chr6.1:50193699-50193718 | None:intergenic | 20.0% |
| !! | TTAACAAGGAACTTAAAATT+TGG | - | chr6.1:50194364-50194383 | MS.gene86621:intron | 20.0% |
| !! | TTATATATTTCTTCCTTATC+AGG | + | chr6.1:50192534-50192553 | None:intergenic | 20.0% |
| !! | TTATATGTATGAGTGAAAAT+GGG | - | chr6.1:50191930-50191949 | MS.gene86621:intron | 20.0% |
| !! | TTCCTGCATTATTATAAATA+TGG | + | chr6.1:50195431-50195450 | None:intergenic | 20.0% |
| !! | TTGTTCAATCATTTCAATTA+TGG | - | chr6.1:50194427-50194446 | MS.gene86621:intron | 20.0% |
| !!! | AAATCATTCTTTGTTTTTGA+AGG | + | chr6.1:50191659-50191678 | None:intergenic | 20.0% |
| !!! | AATCATTCTTTGTTTTTGAA+GGG | + | chr6.1:50191658-50191677 | None:intergenic | 20.0% |
| !!! | ATTATGAATAGACTTTTAAC+CGG | - | chr6.1:50192391-50192410 | MS.gene86621:CDS | 20.0% |
| !!! | ATTTTATGACAACATACTAT+AGG | + | chr6.1:50192559-50192578 | None:intergenic | 20.0% |
| !!! | TACAAATACTTTGTTTGTAA+AGG | - | chr6.1:50191621-50191640 | MS.gene86621:intron | 20.0% |
| !!! | TTATATTAGTTAGCTTTCTT+GGG | + | chr6.1:50193473-50193492 | None:intergenic | 20.0% |
| !!! | TTCACTGTTTTAAATAATTG+AGG | + | chr6.1:50193884-50193903 | None:intergenic | 20.0% |
| !!! | TTTATATTAGTTAGCTTTCT+TGG | + | chr6.1:50193474-50193493 | None:intergenic | 20.0% |
| !!! | TTTCATATATTTGGAATGAA+TGG | - | chr6.1:50192801-50192820 | MS.gene86621:intron | 20.0% |
| !!! | TTTTAAATACTTCTAACAAG+AGG | - | chr6.1:50195397-50195416 | MS.gene86621:intron | 20.0% |
| ! | AAAAAAAACCTGTAAATGAC+TGG | + | chr6.1:50193592-50193611 | None:intergenic | 25.0% |
| ! | AAAAATTGAAGATACGAGTT+TGG | + | chr6.1:50192423-50192442 | None:intergenic | 25.0% |
| ! | AAACAGTAGAATACATTGTT+TGG | + | chr6.1:50191304-50191323 | None:intergenic | 25.0% |
| ! | AAATATACAAGAGAAAGGAA+TGG | - | chr6.1:50194060-50194079 | MS.gene86621:intron | 25.0% |
| ! | AACCAATCCTTAAAATAAAG+GGG | + | chr6.1:50191693-50191712 | None:intergenic | 25.0% |
| ! | AATAATGCAGGAATTTGATA+TGG | - | chr6.1:50195438-50195457 | MS.gene86621:CDS | 25.0% |
| ! | AATATTAATGCACACTCAAT+AGG | - | chr6.1:50192576-50192595 | MS.gene86621:intron | 25.0% |
| ! | AATGTTATTCCATATAGCTT+TGG | - | chr6.1:50194535-50194554 | MS.gene86621:intron | 25.0% |
| ! | ATCAGTGAGTTTCATATATT+TGG | - | chr6.1:50192792-50192811 | MS.gene86621:intron | 25.0% |
| ! | ATGTTATTCCATATAGCTTT+GGG | - | chr6.1:50194536-50194555 | MS.gene86621:intron | 25.0% |
| ! | ATTAACTAAAGTGACACTAA+TGG | + | chr6.1:50195029-50195048 | None:intergenic | 25.0% |
| ! | ATTAATTATCAGAAGCCAAA+GGG | + | chr6.1:50191455-50191474 | None:intergenic | 25.0% |
| ! | CTGAAAAATATACAAGAGAA+AGG | - | chr6.1:50194055-50194074 | MS.gene86621:intron | 25.0% |
| ! | CTTATATGTATGAGTGAAAA+TGG | - | chr6.1:50191929-50191948 | MS.gene86621:intron | 25.0% |
| ! | GAATGCAAAGAATATTATGT+TGG | - | chr6.1:50193901-50193920 | MS.gene86621:intron | 25.0% |
| ! | GAATTTGATATGGATCTTAT+TGG | - | chr6.1:50195448-50195467 | MS.gene86621:CDS | 25.0% |
| ! | GTTTATTTAGGTAAAATCTC+AGG | - | chr6.1:50192057-50192076 | MS.gene86621:CDS | 25.0% |
| ! | TACAAAAATAAACGGATAAC+AGG | + | chr6.1:50193834-50193853 | None:intergenic | 25.0% |
| ! | TGAATCAAATTAACCTGATA+AGG | - | chr6.1:50192518-50192537 | MS.gene86621:CDS | 25.0% |
| !! | ATTATCTCCAAGATTTTCTT+TGG | + | chr6.1:50193537-50193556 | None:intergenic | 25.0% |
| !! | ATTTCATTGATGACAGAAAT+TGG | + | chr6.1:50194136-50194155 | None:intergenic | 25.0% |
| !! | CATCACTATTTGAAACAAAA+AGG | + | chr6.1:50193053-50193072 | None:intergenic | 25.0% |
| !! | TAAATGTTTCTGAGAATAGA+GGG | - | chr6.1:50194569-50194588 | MS.gene86621:intron | 25.0% |
| !! | TTTTCCATTTTAAACTGAGA+AGG | - | chr6.1:50192015-50192034 | MS.gene86621:CDS | 25.0% |
| !!! | ACTTATTTTTTAGTTGGAAG+GGG | + | chr6.1:50192891-50192910 | None:intergenic | 25.0% |
| !!! | AGACTTATTTTTTAGTTGGA+AGG | + | chr6.1:50192893-50192912 | None:intergenic | 25.0% |
| !!! | AGCCTAATGAAATTTTTTGA+AGG | - | chr6.1:50193694-50193713 | MS.gene86621:intron | 25.0% |
| !!! | GACTTATTTTTTAGTTGGAA+GGG | + | chr6.1:50192892-50192911 | None:intergenic | 25.0% |
| !!! | TTAGTTATTTTTTTAGGGGA+GGG | - | chr6.1:50192291-50192310 | MS.gene86621:CDS | 25.0% |
| AAAAGAAAGAGTTGTGATGA+AGG | - | chr6.1:50193298-50193317 | MS.gene86621:intron | 30.0% | |
| AAAGAAAGAGTTGTGATGAA+GGG | - | chr6.1:50193299-50193318 | MS.gene86621:intron | 30.0% | |
| AAATGTATCCAGTCATTTAC+AGG | - | chr6.1:50193581-50193600 | MS.gene86621:intron | 30.0% | |
| AAGAATAGATCAACAGAAGT+GGG | - | chr6.1:50194481-50194500 | MS.gene86621:intron | 30.0% | |
| AAGTTCCTTGTTAAGAAACT+TGG | + | chr6.1:50194358-50194377 | None:intergenic | 30.0% | |
| AATAAACGGATAACAGGTTA+TGG | + | chr6.1:50193828-50193847 | None:intergenic | 30.0% | |
| ACCAATCCTTAAAATAAAGG+GGG | + | chr6.1:50191692-50191711 | None:intergenic | 30.0% | |
| AGACAATCAAAAGGGAAAAA+AGG | + | chr6.1:50191896-50191915 | None:intergenic | 30.0% | |
| ATTGTTAGATATCAACCCTT+TGG | - | chr6.1:50191437-50191456 | MS.gene86621:CDS | 30.0% | |
| CTGGATAAGTGAACAAATTT+AGG | + | chr6.1:50195096-50195115 | None:intergenic | 30.0% | |
| CTTATCCAGTTACATAAAGA+TGG | - | chr6.1:50195107-50195126 | MS.gene86621:intron | 30.0% | |
| GACAAAATATCATACTGATC+AGG | - | chr6.1:50195283-50195302 | MS.gene86621:intron | 30.0% | |
| GATTAATTATCAGAAGCCAA+AGG | + | chr6.1:50191456-50191475 | None:intergenic | 30.0% | |
| GATTCATCTGCATAAATCAA+AGG | - | chr6.1:50194591-50194610 | MS.gene86621:intron | 30.0% | |
| GTGATGGTTAAATAGAAAAG+AGG | + | chr6.1:50191192-50191211 | None:intergenic | 30.0% | |
| TAGAAGCGACATCATAAAAT+GGG | + | chr6.1:50194279-50194298 | None:intergenic | 30.0% | |
| TATCTCCATCTTTATGTAAC+TGG | + | chr6.1:50195115-50195134 | None:intergenic | 30.0% | |
| TTCCAACTATACTATGATGT+CGG | + | chr6.1:50194402-50194421 | None:intergenic | 30.0% | |
| TTCTAATCAAAACCCTAATC+AGG | - | chr6.1:50195190-50195209 | MS.gene86621:intron | 30.0% | |
| TTGTATGCTATTACACAGAT+TGG | - | chr6.1:50193382-50193401 | MS.gene86621:intron | 30.0% | |
| ! | AAAGTTTTGCCTTTCAATTG+TGG | - | chr6.1:50191407-50191426 | MS.gene86621:CDS | 30.0% |
| ! | AATTTGCTTTAGCCAAGATT+TGG | - | chr6.1:50191516-50191535 | MS.gene86621:intron | 30.0% |
| ! | AGATTTTCAATGCATACACA+AGG | + | chr6.1:50191337-50191356 | None:intergenic | 30.0% |
| ! | ATCTTGGCTAAAGCAAATTT+TGG | + | chr6.1:50191515-50191534 | None:intergenic | 30.0% |
| ! | GTAAATGTTTCTGAGAATAG+AGG | - | chr6.1:50194568-50194587 | MS.gene86621:intron | 30.0% |
| ! | TAATTAAGTAGTCTGGTTTG+TGG | + | chr6.1:50192083-50192102 | None:intergenic | 30.0% |
| ! | TATTCTCAAACAGGAGTTTT+AGG | - | chr6.1:50192489-50192508 | MS.gene86621:CDS | 30.0% |
| ! | TTAGCCTTCTCAGTTTAAAA+TGG | + | chr6.1:50192022-50192041 | None:intergenic | 30.0% |
| ! | TTTTCGCTTGAAAAAGTGAA+AGG | + | chr6.1:50194192-50194211 | None:intergenic | 30.0% |
| !! | AAAGTGTTGAGACAATCAAA+AGG | + | chr6.1:50191905-50191924 | None:intergenic | 30.0% |
| !! | AAGTGTTGAGACAATCAAAA+GGG | + | chr6.1:50191904-50191923 | None:intergenic | 30.0% |
| !! | AATGTTGTGCAAGTCATTTT+AGG | - | chr6.1:50194951-50194970 | MS.gene86621:intron | 30.0% |
| !! | ACTCATCATGAATTTGCTTT+TGG | + | chr6.1:50192836-50192855 | None:intergenic | 30.0% |
| !!! | AGGAATTTAGTTTTGCTTCA+TGG | - | chr6.1:50193738-50193757 | MS.gene86621:CDS | 30.0% |
| !!! | ATTTTAAGGATTGGTTTACG+TGG | - | chr6.1:50191697-50191716 | MS.gene86621:CDS | 30.0% |
| !!! | GGGTTTTGATTAGAACTTAT+TGG | + | chr6.1:50195185-50195204 | None:intergenic | 30.0% |
| !!! | GTTAGTTATTTTTTTAGGGG+AGG | - | chr6.1:50192290-50192309 | MS.gene86621:CDS | 30.0% |
| !!! | TAGTTATTTTTTTAGGGGAG+GGG | - | chr6.1:50192292-50192311 | MS.gene86621:CDS | 30.0% |
| !!! | TTTTTTGATACACCATGCTT+AGG | - | chr6.1:50192439-50192458 | MS.gene86621:CDS | 30.0% |
| AAGAAAGAGTTGTGATGAAG+GGG | - | chr6.1:50193300-50193319 | MS.gene86621:intron | 35.0% | |
| AAGTACATCAGCAAATGATC+AGG | - | chr6.1:50195331-50195350 | MS.gene86621:intron | 35.0% | |
| AATCAGAACAATGATGCAAG+TGG | - | chr6.1:50194871-50194890 | MS.gene86621:intron | 35.0% | |
| AATGACATGGAGATTATGTC+TGG | + | chr6.1:50193091-50193110 | None:intergenic | 35.0% | |
| AGACACTAGATTCCAAATCT+TGG | + | chr6.1:50191531-50191550 | None:intergenic | 35.0% | |
| ATACAAGAGAAAGGAATGGA+AGG | - | chr6.1:50194064-50194083 | MS.gene86621:intron | 35.0% | |
| ATCTCCATGTCATTAGAACA+TGG | - | chr6.1:50193097-50193116 | MS.gene86621:intron | 35.0% | |
| CAAGAATAGATCAACAGAAG+TGG | - | chr6.1:50194480-50194499 | MS.gene86621:intron | 35.0% | |
| CCATTAAACCCAAAGCTATA+TGG | + | chr6.1:50194547-50194566 | None:intergenic | 35.0% | |
| GAATGTTCCAAACCTAACAA+GGG | - | chr6.1:50193557-50193576 | MS.gene86621:intron | 35.0% | |
| GAGTTTCAACTACCTGTTAT+AGG | - | chr6.1:50192852-50192871 | MS.gene86621:intron | 35.0% | |
| GCGAAAAACTCTTTCAATGA+TGG | - | chr6.1:50194205-50194224 | MS.gene86621:intron | 35.0% | |
| GCTATTACACAGATTGGAAT+GGG | - | chr6.1:50193388-50193407 | MS.gene86621:intron | 35.0% | |
| GTAGAAGCGACATCATAAAA+TGG | + | chr6.1:50194280-50194299 | None:intergenic | 35.0% | |
| TACCGACATCATAGTATAGT+TGG | - | chr6.1:50194397-50194416 | MS.gene86621:intron | 35.0% | |
| TATGGATCTTATTGGAGATC+AGG | - | chr6.1:50195456-50195475 | MS.gene86621:CDS | 35.0% | |
| TCAATTATGGTGTGAAGAAC+TGG | - | chr6.1:50194440-50194459 | MS.gene86621:intron | 35.0% | |
| TGAAGAAGAAGAAGAAGAAG+AGG | - | chr6.1:50193234-50193253 | MS.gene86621:intron | 35.0% | |
| TGAATGTTCCAAACCTAACA+AGG | - | chr6.1:50193556-50193575 | MS.gene86621:intron | 35.0% | |
| TGCTATTACACAGATTGGAA+TGG | - | chr6.1:50193387-50193406 | MS.gene86621:intron | 35.0% | |
| TGCTCAACTTATTCTCAAAC+AGG | - | chr6.1:50192480-50192499 | MS.gene86621:CDS | 35.0% | |
| TGGAGATCAGGAATTTGATA+TGG | - | chr6.1:50195468-50195487 | MS.gene86621:CDS | 35.0% | |
| TGTCACCAAGTTTCTTAACA+AGG | - | chr6.1:50194350-50194369 | MS.gene86621:intron | 35.0% | |
| TGTTGTGCCAAAGAAAATCT+TGG | - | chr6.1:50193527-50193546 | MS.gene86621:intron | 35.0% | |
| TTATTAGTCCAAACAAGCCT+TGG | + | chr6.1:50193346-50193365 | None:intergenic | 35.0% | |
| TTGGAGTTGTTAAGAAACCA+AGG | - | chr6.1:50193326-50193345 | MS.gene86621:intron | 35.0% | |
| ! | ACATTTTCCCTTGTTAGGTT+TGG | + | chr6.1:50193567-50193586 | None:intergenic | 35.0% |
| ! | AGAATAAGTTGAGCAGAGTT+AGG | + | chr6.1:50192475-50192494 | None:intergenic | 35.0% |
| ! | ATCACTGGCTAATATACTCA+TGG | - | chr6.1:50191144-50191163 | MS.gene86621:intron | 35.0% |
| ! | CAGATCTAACATGCAAGTTT+TGG | - | chr6.1:50191093-50191112 | MS.gene86621:CDS | 35.0% |
| ! | TAAGGCTGATTTCAACAATG+AGG | - | chr6.1:50194642-50194661 | MS.gene86621:intron | 35.0% |
| ! | TGGATACATTTTCCCTTGTT+AGG | + | chr6.1:50193572-50193591 | None:intergenic | 35.0% |
| ! | TTAAGAAACCAAGGCTTGTT+TGG | - | chr6.1:50193335-50193354 | MS.gene86621:intron | 35.0% |
| ! | TTTTCGCTTGAAAAGGTGAA+AGG | + | chr6.1:50194255-50194274 | None:intergenic | 35.0% |
| !! | AATGGGTTTTTCGCTTGAAA+AGG | + | chr6.1:50194262-50194281 | None:intergenic | 35.0% |
| !! | CCATATAGCTTTGGGTTTAA+TGG | - | chr6.1:50194544-50194563 | MS.gene86621:intron | 35.0% |
| !! | GTTGAAATCAGCCTTATTGA+CGG | + | chr6.1:50194638-50194657 | None:intergenic | 35.0% |
| !!! | AGTTATTTTTTTAGGGGAGG+GGG | - | chr6.1:50192293-50192312 | MS.gene86621:CDS | 35.0% |
| !!! | TAACATGCAAGTTTTGGTTG+TGG | - | chr6.1:50191099-50191118 | MS.gene86621:CDS | 35.0% |
| !!! | TCCCCCTTTATTTTAAGGAT+TGG | - | chr6.1:50191688-50191707 | MS.gene86621:CDS | 35.0% |
| AACTTGATCTGATCTGACGT+AGG | + | chr6.1:50191987-50192006 | None:intergenic | 40.0% | |
| ATTACACAGATTGGAATGGG+AGG | - | chr6.1:50193391-50193410 | MS.gene86621:intron | 40.0% | |
| CAATGAGACTTGCCTGATTA+GGG | + | chr6.1:50195205-50195224 | None:intergenic | 40.0% | |
| CACAACATTACCTTCTCAAG+GGG | + | chr6.1:50194940-50194959 | None:intergenic | 40.0% | |
| CAGGAACTACGAATAAAGGA+AGG | - | chr6.1:50194506-50194525 | MS.gene86621:intron | 40.0% | |
| CTACATTGTAGGATCCTCAA+GGG | + | chr6.1:50191964-50191983 | None:intergenic | 40.0% | |
| CTGAAGACTTCAGAGACATT+TGG | - | chr6.1:50193152-50193171 | MS.gene86621:intron | 40.0% | |
| CTGAAGTCTTCAGCACAAAA+TGG | + | chr6.1:50193145-50193164 | None:intergenic | 40.0% | |
| GATAATATCGATCCTCAAGC+TGG | - | chr6.1:50195131-50195150 | MS.gene86621:intron | 40.0% | |
| GCACAACATTACCTTCTCAA+GGG | + | chr6.1:50194941-50194960 | None:intergenic | 40.0% | |
| GCATCAAATCTCCTCACAAA+CGG | - | chr6.1:50194992-50195011 | MS.gene86621:intron | 40.0% | |
| GGAACAGGAACTACGAATAA+AGG | - | chr6.1:50194502-50194521 | MS.gene86621:intron | 40.0% | |
| TAATCCAGAATCTAGCTGAG+AGG | - | chr6.1:50191471-50191490 | MS.gene86621:intron | 40.0% | |
| TCATTGTACAACCGTTTGTG+AGG | + | chr6.1:50195006-50195025 | None:intergenic | 40.0% | |
| TGACACAATTCAAAGACTCG+AGG | + | chr6.1:50191833-50191852 | None:intergenic | 40.0% | |
| TGCACAACATTACCTTCTCA+AGG | + | chr6.1:50194942-50194961 | None:intergenic | 40.0% | |
| TGCTCCATGTTCTAATGACA+TGG | + | chr6.1:50193104-50193123 | None:intergenic | 40.0% | |
| TGGAGGAAGAAAAGGAATGA+TGG | - | chr6.1:50194315-50194334 | MS.gene86621:intron | 40.0% | |
| TGGCTAATATACTCATGGCA+TGG | - | chr6.1:50191149-50191168 | MS.gene86621:intron | 40.0% | |
| ! | AGACATTTGGAAGTATGCAC+TGG | - | chr6.1:50193165-50193184 | MS.gene86621:intron | 40.0% |
| ! | ATTTTCAGTTCGAACTGCCA+AGG | - | chr6.1:50192713-50192732 | MS.gene86621:intron | 40.0% |
| ! | CCTTTTCTTCCTCCATATGA+CGG | + | chr6.1:50194310-50194329 | None:intergenic | 40.0% |
| ! | GAATGCTACTTCCGTCAATA+AGG | - | chr6.1:50194624-50194643 | MS.gene86621:intron | 40.0% |
| !!! | AGGATTGGTTTACGTGGTTT+TGG | - | chr6.1:50191703-50191722 | MS.gene86621:CDS | 40.0% |
| !!! | GTTATTTTTTTAGGGGAGGG+GGG | - | chr6.1:50192294-50192313 | MS.gene86621:CDS | 40.0% |
| !!! | TGCGATCCCCCTTTATTTTA+AGG | - | chr6.1:50191683-50191702 | MS.gene86621:CDS | 40.0% |
| !!! | TTATTTTTTTAGGGGAGGGG+GGG | - | chr6.1:50192295-50192314 | MS.gene86621:CDS | 40.0% |
| AAGTACATCAGCTACTGGTC+AGG | - | chr6.1:50195307-50195326 | MS.gene86621:intron | 45.0% | |
| AGATCAACAGAAGTGGGAAC+AGG | - | chr6.1:50194487-50194506 | MS.gene86621:intron | 45.0% | |
| AGTTGTGATGAAGGGGAGTT+TGG | - | chr6.1:50193307-50193326 | MS.gene86621:intron | 45.0% | |
| ATGCCAAAGACTCGTCATCA+TGG | + | chr6.1:50191126-50191145 | None:intergenic | 45.0% | |
| CAAGAGAAAGGAATGGAAGG+AGG | - | chr6.1:50194067-50194086 | MS.gene86621:intron | 45.0% | |
| CCAATGAGACTTGCCTGATT+AGG | + | chr6.1:50195206-50195225 | None:intergenic | 45.0% | |
| CCGTCATATGGAGGAAGAAA+AGG | - | chr6.1:50194307-50194326 | MS.gene86621:intron | 45.0% | |
| CCTAATCAGGCAAGTCTCAT+TGG | - | chr6.1:50195203-50195222 | MS.gene86621:intron | 45.0% | |
| CTCATGGCATGGCAATACAA+AGG | - | chr6.1:50191160-50191179 | MS.gene86621:intron | 45.0% | |
| GATACGAGTTTGGCATAGTC+CGG | + | chr6.1:50192413-50192432 | None:intergenic | 45.0% | |
| GCTACATTGTAGGATCCTCA+AGG | + | chr6.1:50191965-50191984 | None:intergenic | 45.0% | |
| TCTACCAGCTATCCGTCATA+TGG | - | chr6.1:50194295-50194314 | MS.gene86621:intron | 45.0% | |
| TCTGACGTAGGCTACATTGT+AGG | + | chr6.1:50191975-50191994 | None:intergenic | 45.0% | |
| !! | TTATATTATACAAAAATAAA+CGG | + | chr6.1:50193842-50193861 | None:intergenic | 5.0% |
| !!! | TAAAATATTCAATATTTTAA+TGG | - | chr6.1:50192628-50192647 | MS.gene86621:intron | 5.0% |
| !!! | TTTTTTTTTTAAGTTTATTT+AGG | - | chr6.1:50192045-50192064 | MS.gene86621:CDS | 5.0% |
| ACCAGCTATCCGTCATATGG+AGG | - | chr6.1:50194298-50194317 | MS.gene86621:intron | 50.0% | |
| AGATGTGCAACCCCTTGAGA+AGG | - | chr6.1:50194927-50194946 | MS.gene86621:intron | 50.0% | |
| CAAAGCATGGTGAGCATCCT+TGG | + | chr6.1:50192733-50192752 | None:intergenic | 50.0% | |
| CAAGGATGCTCACCATGCTT+TGG | - | chr6.1:50192731-50192750 | MS.gene86621:intron | 50.0% | |
| CACAGATTGGAATGGGAGGT+AGG | - | chr6.1:50193395-50193414 | MS.gene86621:intron | 50.0% | |
| CAGGCAAGTACATCAGCTAC+TGG | - | chr6.1:50195302-50195321 | MS.gene86621:intron | 50.0% | |
| CCAACCTCTCAGCTAGATTC+TGG | + | chr6.1:50191478-50191497 | None:intergenic | 50.0% | |
| CCAGAATCTAGCTGAGAGGT+TGG | - | chr6.1:50191475-50191494 | MS.gene86621:intron | 50.0% | |
| CTCGAAGAGTGACCAAAGCA+TGG | + | chr6.1:50192746-50192765 | None:intergenic | 50.0% | |
| GAGGATGAGATTCCAGCTTG+AGG | + | chr6.1:50195146-50195165 | None:intergenic | 50.0% | |
| GGCTTCACAATGCCTAAGCA+TGG | + | chr6.1:50192454-50192473 | None:intergenic | 50.0% | |
| TGACGAGTCTTTGGCATCAC+TGG | - | chr6.1:50191129-50191148 | MS.gene86621:intron | 50.0% | |
| TGGTGACTCGTTCAACACAG+AGG | + | chr6.1:50195165-50195184 | None:intergenic | 50.0% | |
| ! | GGACCATGATGACGAGTCTT+TGG | - | chr6.1:50191120-50191139 | MS.gene86621:CDS | 50.0% |
| !! | TCCTCCATATGACGGATAGC+TGG | + | chr6.1:50194302-50194321 | None:intergenic | 50.0% |
| AATGGGTCAGATCGCCCTTG+AGG | - | chr6.1:50191947-50191966 | MS.gene86621:CDS | 55.0% | |
| GGTGTGAAGAACTGGAGCGT+TGG | - | chr6.1:50194448-50194467 | MS.gene86621:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 50191082 | 50195513 | 50191082 | ID=MS.gene86621 |
| chr6.1 | mRNA | 50191082 | 50195513 | 50191082 | ID=MS.gene86621.t1;Parent=MS.gene86621 |
| chr6.1 | exon | 50195414 | 50195513 | 50195414 | ID=MS.gene86621.t1.exon1;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50195414 | 50195513 | 50195414 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50193722 | 50193874 | 50193722 | ID=MS.gene86621.t1.exon2;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50193722 | 50193874 | 50193722 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50192993 | 50193069 | 50192993 | ID=MS.gene86621.t1.exon3;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50192993 | 50193069 | 50192993 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50191932 | 50192555 | 50191932 | ID=MS.gene86621.t1.exon4;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50191932 | 50192555 | 50191932 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50191647 | 50191727 | 50191647 | ID=MS.gene86621.t1.exon5;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50191647 | 50191727 | 50191647 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50191384 | 50191479 | 50191384 | ID=MS.gene86621.t1.exon6;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50191384 | 50191479 | 50191384 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50191231 | 50191290 | 50191231 | ID=MS.gene86621.t1.exon7;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50191231 | 50191290 | 50191231 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| chr6.1 | exon | 50191082 | 50191147 | 50191082 | ID=MS.gene86621.t1.exon8;Parent=MS.gene86621.t1 |
| chr6.1 | CDS | 50191082 | 50191147 | 50191082 | ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1 |
| Gene Sequence |
| Protein sequence |
