AlfalfaGEDB | MS.gene86621

M. sativa cultivar XinJiangDaYe / MS.gene86621

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1901363
PFAM: PF00072.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86621.t1	XP_013441872.2	58	576	67	7	1	405	1	572	9.60E-118	433.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86621.t1	Q940D0	48.8	86	26	4	74	147	245	324	9.7e-10	66.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86621.t1	A0A396HLS9	62.2	328	56	6	60	319	89	416	2.6e-56	229.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene86621.t1	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86621.t1	MTR_0450s0040	65.385	182	37	2	60	215	163	344	7.61e-68	219
MS.gene86621.t1	MTR_0450s0040	57.051	156	61	3	1	153	1	153	6.41e-48	167
MS.gene86621.t1	MTR_7g026400	67.105	76	25	0	80	155	176	251	3.51e-25	108
MS.gene86621.t1	MTR_7g026400	61.111	54	21	0	31	84	14	67	1.27e-15	79.3
MS.gene86621.t1	MTR_7g026400	41.270	126	61	5	179	293	331	454	3.98e-11	65.5
MS.gene86621.t1	MTR_6g089040	76.923	52	12	0	33	84	5	56	1.36e-20	85.5
MS.gene86621.t1	MTR_6g088950	41.176	136	63	4	18	139	7	139	5.08e-19	85.5
MS.gene86621.t1	MTR_6g088960	68.000	50	16	0	35	84	27	76	7.83e-16	72.4
MS.gene86621.t1	MTR_4g121020	50.746	67	22	2	74	135	119	179	4.27e-11	65.1
MS.gene86621.t1	MTR_4g121020	50.746	67	22	2	74	135	223	283	5.18e-11	65.1

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86621.t1	AT3G16857	48.837	86	26	4	74	147	175	254	3.24e-12	68.9
MS.gene86621.t1	AT3G16857	48.837	86	26	4	74	147	245	324	3.57e-12	68.6
MS.gene86621.t1	AT3G16857	48.837	86	26	4	74	147	245	324	4.04e-12	68.6
MS.gene86621.t1	AT5G07210	44.595	74	36	1	69	137	233	306	9.13e-12	67.4
MS.gene86621.t1	AT5G07210	44.595	74	36	1	69	137	225	298	9.22e-12	67.4
MS.gene86621.t1	AT2G27070	59.615	52	21	0	86	137	250	301	4.29e-11	65.1

Showing 1 to 6 of 6 entries

Previous1Next

Find 75 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATACAAGAGAAAGGAA+TGG	0.592304	6.1:-50192513	MS.gene86621:CDS
AAATGATATTTACCTATAAC+AGG	0.408467	6.1:+50193709	None:intergenic
AAATGTATCCAGTCATTTAC+AGG	0.301898	6.1:-50192992	MS.gene86621:intron
AAGAATAGATCAACAGAAGT+GGG	0.573718	6.1:-50192092	MS.gene86621:CDS
AAGTACATCAGCAAATGATC+AGG	0.511132	6.1:-50191242	MS.gene86621:CDS
AAGTACATCAGCTACTGGTC+AGG	0.502651	6.1:-50191266	MS.gene86621:CDS
AAGTTCCTTGTTAAGAAACT+TGG	0.471132	6.1:+50192218	None:intergenic
AATAATGCAGGAATTTGATA+TGG	0.300210	6.1:-50191135	MS.gene86621:intron
AATCAGAACAATGATGCAAG+TGG	0.574896	6.1:-50191702	MS.gene86621:CDS
AATGTTATTCCATATAGCTT+TGG	0.374067	6.1:-50192038	MS.gene86621:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAGAGTTGTGATGA+AGG	-	chr6.1:50193298-50193317	MS.gene86621:intron	30.0%
AAAGAAAGAGTTGTGATGAA+GGG	-	chr6.1:50193299-50193318	MS.gene86621:intron	30.0%
AAATGTATCCAGTCATTTAC+AGG	-	chr6.1:50193581-50193600	MS.gene86621:intron	30.0%
AAGAATAGATCAACAGAAGT+GGG	-	chr6.1:50194481-50194500	MS.gene86621:intron	30.0%
AAGTTCCTTGTTAAGAAACT+TGG	+	chr6.1:50194358-50194377	None:intergenic	30.0%
AATAAACGGATAACAGGTTA+TGG	+	chr6.1:50193828-50193847	None:intergenic	30.0%
ACCAATCCTTAAAATAAAGG+GGG	+	chr6.1:50191692-50191711	None:intergenic	30.0%
AGACAATCAAAAGGGAAAAA+AGG	+	chr6.1:50191896-50191915	None:intergenic	30.0%
ATTGTTAGATATCAACCCTT+TGG	-	chr6.1:50191437-50191456	MS.gene86621:CDS	30.0%
CTGGATAAGTGAACAAATTT+AGG	+	chr6.1:50195096-50195115	None:intergenic	30.0%

Showing 1 to 10 of 211 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	50191082	50195513	50191082	ID=MS.gene86621
chr6.1	mRNA	50191082	50195513	50191082	ID=MS.gene86621.t1;Parent=MS.gene86621
chr6.1	exon	50195414	50195513	50195414	ID=MS.gene86621.t1.exon1;Parent=MS.gene86621.t1
chr6.1	CDS	50195414	50195513	50195414	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50193722	50193874	50193722	ID=MS.gene86621.t1.exon2;Parent=MS.gene86621.t1
chr6.1	CDS	50193722	50193874	50193722	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50192993	50193069	50192993	ID=MS.gene86621.t1.exon3;Parent=MS.gene86621.t1
chr6.1	CDS	50192993	50193069	50192993	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50191932	50192555	50191932	ID=MS.gene86621.t1.exon4;Parent=MS.gene86621.t1
chr6.1	CDS	50191932	50192555	50191932	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50191647	50191727	50191647	ID=MS.gene86621.t1.exon5;Parent=MS.gene86621.t1
chr6.1	CDS	50191647	50191727	50191647	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50191384	50191479	50191384	ID=MS.gene86621.t1.exon6;Parent=MS.gene86621.t1
chr6.1	CDS	50191384	50191479	50191384	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50191231	50191290	50191231	ID=MS.gene86621.t1.exon7;Parent=MS.gene86621.t1
chr6.1	CDS	50191231	50191290	50191231	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1
chr6.1	exon	50191082	50191147	50191082	ID=MS.gene86621.t1.exon8;Parent=MS.gene86621.t1
chr6.1	CDS	50191082	50191147	50191082	ID=cds.MS.gene86621.t1;Parent=MS.gene86621.t1

Gene Sequence

>MS.gene86621

ATGAGTTACGACAGATCTAACATGCAAGTTTTGGTTGTGGACCATGATGACGAGTCTTTGGCATCACTGGCTAATATACTCATGGCATGGCAATACAAAGGTACGTACCTCTTTTCTATTTAACCATCACATAATTGAATTACTTTATTTCGATTGCGATTTCATAGATTTTCAATCTTTTCAAATATGTAAAAAGTTTGTTGAAATTCAAAAAAAATTCCAAACAATGTATTCTACTGTTTATCGATCGATCCTTGTGTATGCATTGAAAATCTCTAAAGTTATTCAATTTGCATGTTGTTGAATAACTTTTGTTGTATTAAATAAAGTTTTGCCTTTCAATTGTGGTATTTTAATTGTTAGATATCAACCCTTTGGCTTCTGATAATTAATCCAGAATCTAGCTGAGAGGTTGGCAAGTAAAACTTGACCAAAATTTGCTTTAGCCAAGATTTGGAATCTAGTGTCTCGTTTTTAAATTATATTATATGATCTAAATATATTGTACAAATATTTTAATTTTTTTTTTGTATTTATTGTACAAATACTTTGTTTGTAAAGGAATGACTTTATCCCTTCAAAAACAAAGAATGATTTTATGTGCGATCCCCCTTTATTTTAAGGATTGGTTTACGTGGTTTTGGTATATGTTCTTTTAAAGATTAAATATCAAGTAAAAAAAAAGTACTTGTTTGATCGACATTCATAAAATTAGTAGTGTTTTTCATTTTCACTTATTTAGCTACTTCCTCGAGTCTTTGAATTGTGTCAATTTGTGTATTTTGTATTTTTTCTCTCTTTTTAGTGATATCCTTTTTTCCCTTTTGATTGTCTCAACACTTTTTATCTTATATGTATGAGTGAAAATGGGTCAGATCGCCCTTGAGGATCCTACAATGTAGCCTACGTCAGATCAGATCAAGTTAGTTTTTTTTTTCCATTTTAAACTGAGAAGGCTAAGTTTTTTTTTTTTAAGTTTATTTAGGTAAAATCTCAGGCCACAAACCAGACTACTTAATTAAATATAAATAATATTTTTATTACTATCATTATTATAGTATTAAATATTTACTTTAAATTAAATTATAAATTTCTTGACTTGTTCAAGAATTTAAGTTTATTATAAACTAAAATTGAAAATATGACATCATATATATTCAAATTCCCTAAAATGATTTGTTAAATATAAAAAACAAAGTTTAATATATGTTAGTTATTTTTTTAGGGGAGGGGGGGATTGATCTGTTATGTTGTTATATTTAAGCATAAATTATGAATAGACTTTTAATGTTAATATATTTAAGCATAAATTATGAATAGACTTTTAACCGGACTATGCCAAACTCGTATCTTCAATTTTTTTGATACACCATGCTTAGGCATTGTGAAGCCTAACTCTGCTCAACTTATTCTCAAACAGGAGTTTTAGGATTAATTGAATCAAATTAACCTGATAAGGAAGAAATATATAACTCCTATAGTATGTTGTCATAAAATATTAATGCACACTCAATAGGAAAACTTGAATCCATTCAGTAATTTAAGTTAAAATATTCAATATTTTAATGGTGACTAACATTCATTTGTACATTACAAAATTTCAATGACCTAATTTTTTTTATTTGGTTTTGATTTTCAGTTCGAACTGCCAAGGATGCTCACCATGCTTTGGTCACTCTTCGAGACTCTCAAGTCTTGTTTGATCTCATAATCAGTGAGTTTCATATATTTGGAATGAATGGATTTCAATTCCAAAAGCAAATTCATGATGAGTTTCAACTACCTGTTATAGGTAAATATCATTTTCCCCTTCCAACTAAAAAATAAGTCTAATTTTTAGACATGAAATCAACCTTGCAATTATTTTATTTTTATATTTTTTATGTTTTGAATACTCTATATTAATATTATATATGCACTTGTTTCACTAGTATAAGTTATGATCTGTTTAAATATTTGACTTTTTCACCTTTTTGTTTCAAATAGTGATGTCTAAAGATAATAGACCAGACATAATCTCCATGTCATTAGAACATGGAGCAGCACAATATATTGTTAAACCATTTTGTGCTGAAGACTTCAGAGACATTTGGAAGTATGCACTGGAAGCCAAGAAAAATAAACTATTTATTGATAGTTTATTTATAGCAAGTGAAGAAGAAGAAGAAGAAGAGGAGACATCAACTGATCAACTACAAACTAAAAAGAATTGTAGTAAAAGAAAGAGTTGTGATGAAGGGGAGTTTGGAGTTGTTAAGAAACCAAGGCTTGTTTGGACTAATAATCTTCACAGTCGATTTTTGTATGCTATTACACAGATTGGAATGGGAGGTAGGTTATTTTTTTGAAATTCTTTATATAATAGTTCAGAAAAAGAATATGACAAGACCCAAGAAAGCTAACTAATATAAATTTTGTTGTGCTTCTTTGTTTTTCTCTTTCAGATGTTGTGCCAAAGAAAATCTTGGAGATAATGAATGTTCCAAACCTAACAAGGGAAAATGTATCCAGTCATTTACAGGTTTTTTTTTTCTTCTCAATCTATATAGTTCATATATTTCTTTGAATCTTAATCATATTCGCTATATACAAATGCTCCTTTTTTTTTATGAAGCCTAATGAAATTTTTTGAAGGTAGATATTCTAAATATTGTTGAGGAATTTAGTTTTGCTTCATGGTAAATTTATTATTCTAAATTTTTTATTTATCTTAAATCCTTAAATTTTCCATTTTATATATAGACCATAACCTGTTATCCGTTTATTTTTGTATAATATAAGTCATCTTCTTAGTGATTGCCTCAATTATTTAAAACAGTGAATGCAAAGAATATTATGTTGGTTCAGTAATCAATTTCATTTTTGCTTTGTTTAATTTTTTCGCTTCTATTCTAAATATTTTTAGAATATATTTCAAGTTTCTAATGCATTAGTATATGATCATATAAAAACTTGTAGAAGCATCGCATGTTTCTGAAAAATATACAAGAGAAAGGAATGGAAGGAGGAGTTTCTCAGAGAGCTTTAAATTCAAAATTTGCATCGGATCTTCCAATTTCTGTCATCAATGAAATCATAGAAAGAAGAAAAAACAGTCGATATTCAAACCTTTCACTTTTTCAAGCGAAAAACTCTTTCAATGATGGTGCTTCTACTAGCAATTCATCAAACCTTTCACCTTTTCAAGCGAAAAACCCATTTTATGATGTCGCTTCTACCAGCTATCCGTCATATGGAGGAAGAAAAGGAATGATGGCTTCTTCTTCTTTGTCACCAAGTTTCTTAACAAGGAACTTAAAATTTGGTGATACTAGTTACCGACATCATAGTATAGTTGGAAATGATTTGTTCAATCATTTCAATTATGGTGTGAAGAACTGGAGCGTTGGATGTACAATCAAGAATAGATCAACAGAAGTGGGAACAGGAACTACGAATAAAGGAAGGTTTGACAATGTTATTCCATATAGCTTTGGGTTTAATGGAGTAAATGTTTCTGAGAATAGAGGGATTCATCTGCATAAATCAAAGGCTGCTGTTGAGAATGCTACTTCCGTCAATAAGGCTGATTTCAACAATGAGGTATGCAAACATGAATCTTTTAAAACAATCCACAATAATTTTCTATAAAAATATTTCAATCGACTAATCATTTGAAACAATTTTTTGATATTTTTTTTAAAAATCTCATTTGTATAATTTCGACATATATAGACACACACACACACGTAATGTGCACCATAATTTTTTTTCAATGTTACTGACATATTTTTTTTCTTGAATCAGATGAATCAGAACAATGATGCAAGTGGATTTCTGAATTCTGACCTATTTAATTTCTATCAAGATGTGCAACCCCTTGAGAAGGTAATGTTGTGCAAGTCATTTTAGGCGTAACTTTTGTATGATAGCATCAAATCTCCTCACAAACGGTTGTACAATGACCATTAGTGTCACTTTAGTTAATAAAATATGTTATTATCCAAAAGGAATTTTATCTAAAGTATTTGACCTAAATTTGTTCACTTATCCAGTTACATAAAGATGGAGATAATATCGATCCTCAAGCTGGAATCTCATCCTCTGTGTTGAACGAGTCACCAATAAGTTCTAATCAAAACCCTAATCAGGCAAGTCTCATTGGTCATCATACTGTTTTATTTAAATCACATTTTTATTTTGTTTTATTATTCATATGTTTGACAAAATATCATACTGATCAGGCAAGTACATCAGCTACTGGTCAGGCAAGTACATCAGCAAATGATCAGGCAAGTAAACTTGTTAAATAAATGTTTGTTTATTGCAATTAATATTTTAAATACTTCTAACAAGAGGCAATTTTACCATATTTATAATAATGCAGGAATTTGATATGGATCTTATTGGAGATCAGGAATTTGATATGGATCTTATTGGAGAATTGTTTTGA

Protein sequence

>MS.gene86621.t1

MSYDRSNMQVLVVDHDDESLASLANILMAWQYKVRTAKDAHHALVTLRDSQVLFDLIISEFHIFGMNGFQFQKQIHDEFQLPVIDVVPKKILEIMNVPNLTRENVSSHLQKHRMFLKNIQEKGMEGGVSQRALNSKFASDLPISVINEIIERRKNSRYSNLSLFQAKNSFNDGASTSNSSNLSPFQAKNPFYDVASTSYPSYGGRKGMMASSSLSPSFLTRNLKFGDTSYRHHSIVGNDLFNHFNYGVKNWSVGCTIKNRSTEVGTGTTNKGRFDNVIPYSFGFNGVNVSENRGIHLHKSKAAVENATSVNKADFNNEMNQNNDASGFLNSDLFNFYQDVQPLEKLHKDGDNIDPQAGISSSVLNESPISSNQNPNQASTSATGQASTSANDQASKLEFDMDLIGDQEFDMDLIGELF