Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86674.t1 | KEH21945.1 | 89.7 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 5.00E-63 | 250.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86674.t1 | Q69T58 | 63.0 | 154 | 52 | 2 | 6 | 159 | 8 | 156 | 6.2e-46 | 185.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86674.t1 | A0A072U7Y3 | 89.7 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 3.6e-63 | 250.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene86674.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86674.t1 | MTR_7g027265 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 7.15e-89 | 256 |
MS.gene86674.t1 | MTR_6g477820 | 63.743 | 171 | 50 | 1 | 1 | 159 | 1 | 171 | 5.11e-65 | 212 |
MS.gene86674.t1 | MTR_7g427700 | 63.576 | 151 | 43 | 2 | 1 | 151 | 1 | 139 | 8.30e-56 | 182 |
MS.gene86674.t1 | MTR_7g427710 | 63.576 | 151 | 43 | 2 | 1 | 151 | 1 | 139 | 8.57e-54 | 181 |
MS.gene86674.t1 | MTR_5g046040 | 57.447 | 141 | 59 | 1 | 19 | 158 | 35 | 175 | 3.15e-49 | 163 |
MS.gene86674.t1 | MTR_7g076080 | 53.957 | 139 | 64 | 0 | 17 | 155 | 91 | 229 | 5.93e-46 | 160 |
MS.gene86674.t1 | MTR_8g432540 | 53.957 | 139 | 64 | 0 | 17 | 155 | 115 | 253 | 1.28e-45 | 160 |
MS.gene86674.t1 | MTR_5g029320 | 50.000 | 140 | 69 | 1 | 19 | 157 | 91 | 230 | 3.70e-43 | 153 |
MS.gene86674.t1 | MTR_1g101280 | 51.799 | 139 | 67 | 0 | 17 | 155 | 56 | 194 | 2.63e-42 | 150 |
MS.gene86674.t1 | MTR_2g088470 | 50.746 | 134 | 66 | 0 | 19 | 152 | 69 | 202 | 6.15e-42 | 149 |
MS.gene86674.t1 | MTR_4g047800 | 46.405 | 153 | 80 | 1 | 2 | 152 | 43 | 195 | 9.58e-42 | 149 |
MS.gene86674.t1 | MTR_0198s0030 | 46.763 | 139 | 74 | 0 | 21 | 159 | 59 | 197 | 8.42e-41 | 146 |
MS.gene86674.t1 | MTR_2g101720 | 40.645 | 155 | 89 | 2 | 21 | 172 | 143 | 297 | 8.74e-31 | 117 |
MS.gene86674.t1 | MTR_2g030570 | 39.877 | 163 | 94 | 2 | 21 | 182 | 28 | 187 | 3.69e-28 | 110 |
MS.gene86674.t1 | MTR_7g427670 | 53.097 | 113 | 38 | 2 | 49 | 157 | 6 | 107 | 8.79e-28 | 101 |
MS.gene86674.t1 | MTR_2g030600 | 38.650 | 163 | 94 | 3 | 21 | 182 | 28 | 185 | 1.18e-25 | 103 |
MS.gene86674.t1 | MTR_6g027290 | 34.641 | 153 | 94 | 3 | 6 | 156 | 17 | 165 | 1.04e-22 | 89.7 |
MS.gene86674.t1 | MTR_2g030660 | 39.831 | 118 | 63 | 2 | 19 | 135 | 17 | 127 | 7.92e-21 | 89.4 |
MS.gene86674.t1 | MTR_5g005600 | 36.207 | 116 | 73 | 1 | 24 | 139 | 52 | 166 | 8.36e-17 | 77.8 |
MS.gene86674.t1 | MTR_2g030720 | 32.500 | 120 | 69 | 2 | 21 | 140 | 22 | 129 | 6.04e-13 | 63.5 |
MS.gene86674.t1 | MTR_8g013980 | 35.577 | 104 | 59 | 2 | 11 | 106 | 6 | 109 | 1.63e-11 | 62.4 |
MS.gene86674.t1 | MTR_2g101190 | 37.778 | 90 | 41 | 2 | 20 | 94 | 14 | 103 | 6.20e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86674.t1 | AT1G17920 | 63.309 | 139 | 51 | 0 | 20 | 158 | 24 | 162 | 1.96e-54 | 183 |
MS.gene86674.t1 | AT1G17920 | 63.309 | 139 | 51 | 0 | 20 | 158 | 24 | 162 | 1.96e-54 | 183 |
MS.gene86674.t1 | AT1G73360 | 63.504 | 137 | 50 | 0 | 19 | 155 | 34 | 170 | 5.90e-54 | 182 |
MS.gene86674.t1 | AT3G61150 | 54.135 | 133 | 61 | 0 | 19 | 151 | 112 | 244 | 2.23e-45 | 159 |
MS.gene86674.t1 | AT4G00730 | 53.383 | 133 | 62 | 0 | 17 | 149 | 134 | 266 | 1.57e-44 | 155 |
MS.gene86674.t1 | AT4G00730 | 53.383 | 133 | 62 | 0 | 17 | 149 | 134 | 266 | 7.60e-44 | 155 |
MS.gene86674.t1 | AT1G05230 | 48.344 | 151 | 75 | 1 | 6 | 153 | 50 | 200 | 2.56e-42 | 149 |
MS.gene86674.t1 | AT4G21750 | 52.239 | 134 | 64 | 0 | 19 | 152 | 64 | 197 | 6.13e-42 | 149 |
MS.gene86674.t1 | AT4G21750 | 52.239 | 134 | 64 | 0 | 19 | 152 | 64 | 197 | 6.13e-42 | 149 |
MS.gene86674.t1 | AT4G21750 | 52.239 | 134 | 64 | 0 | 19 | 152 | 64 | 197 | 6.13e-42 | 149 |
MS.gene86674.t1 | AT4G21750 | 52.239 | 134 | 64 | 0 | 19 | 152 | 64 | 197 | 6.13e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.34e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT1G05230 | 51.852 | 135 | 65 | 0 | 19 | 153 | 66 | 200 | 9.90e-42 | 149 |
MS.gene86674.t1 | AT4G04890 | 51.111 | 135 | 66 | 0 | 19 | 153 | 64 | 198 | 3.57e-41 | 147 |
MS.gene86674.t1 | AT4G04890 | 51.111 | 135 | 66 | 0 | 19 | 153 | 64 | 198 | 3.57e-41 | 147 |
MS.gene86674.t1 | AT5G52170 | 48.175 | 137 | 71 | 0 | 21 | 157 | 61 | 197 | 4.19e-38 | 138 |
MS.gene86674.t1 | AT5G52170 | 48.175 | 137 | 71 | 0 | 21 | 157 | 61 | 197 | 4.19e-38 | 138 |
MS.gene86674.t1 | AT5G52170 | 48.175 | 137 | 71 | 0 | 21 | 157 | 61 | 197 | 4.40e-38 | 138 |
MS.gene86674.t1 | AT5G46880 | 46.043 | 139 | 73 | 1 | 19 | 157 | 113 | 249 | 1.12e-35 | 132 |
MS.gene86674.t1 | AT5G46880 | 46.043 | 139 | 73 | 1 | 19 | 157 | 113 | 249 | 1.12e-35 | 132 |
MS.gene86674.t1 | AT5G46880 | 46.043 | 139 | 73 | 1 | 19 | 157 | 113 | 249 | 1.12e-35 | 132 |
MS.gene86674.t1 | AT3G03260 | 54.032 | 124 | 56 | 1 | 22 | 144 | 28 | 151 | 1.82e-34 | 127 |
MS.gene86674.t1 | AT3G03260 | 54.032 | 124 | 56 | 1 | 22 | 144 | 28 | 151 | 5.16e-34 | 127 |
MS.gene86674.t1 | AT5G17320 | 42.541 | 181 | 95 | 4 | 6 | 177 | 14 | 194 | 1.76e-32 | 122 |
MS.gene86674.t1 | AT2G32370 | 41.096 | 146 | 86 | 0 | 3 | 148 | 54 | 199 | 1.30e-30 | 117 |
MS.gene86674.t1 | AT1G79840 | 44.615 | 130 | 61 | 2 | 19 | 146 | 103 | 223 | 1.94e-28 | 110 |
MS.gene86674.t1 | AT4G17710 | 44.094 | 127 | 59 | 1 | 19 | 145 | 90 | 204 | 2.11e-28 | 111 |
MS.gene86674.t1 | AT1G79840 | 43.066 | 137 | 67 | 2 | 12 | 146 | 96 | 223 | 2.71e-28 | 110 |
MS.gene86674.t1 | AT1G79840 | 44.615 | 130 | 61 | 2 | 19 | 146 | 103 | 223 | 2.79e-28 | 110 |
MS.gene86674.t1 | AT1G79840 | 44.615 | 130 | 61 | 2 | 19 | 146 | 45 | 165 | 3.80e-28 | 110 |
MS.gene86674.t1 | AT1G79840 | 44.615 | 130 | 61 | 2 | 19 | 146 | 45 | 165 | 3.80e-28 | 110 |
MS.gene86674.t1 | AT1G79840 | 44.615 | 130 | 61 | 2 | 19 | 146 | 132 | 252 | 4.57e-28 | 110 |
MS.gene86674.t1 | AT1G34650 | 44.186 | 129 | 72 | 0 | 24 | 152 | 23 | 151 | 2.02e-26 | 105 |
MS.gene86674.t1 | AT4G25530 | 33.065 | 124 | 83 | 0 | 14 | 137 | 37 | 160 | 9.92e-17 | 77.4 |
MS.gene86674.t1 | AT4G32880 | 36.893 | 103 | 50 | 2 | 7 | 94 | 2 | 104 | 1.03e-12 | 65.9 |
MS.gene86674.t1 | AT1G30490 | 34.211 | 114 | 67 | 2 | 1 | 106 | 2 | 115 | 1.33e-11 | 62.8 |
MS.gene86674.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 5.37e-11 | 60.8 |
MS.gene86674.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 5.42e-11 | 60.8 |
MS.gene86674.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 5.48e-11 | 60.8 |
Find 33 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTTTGGTTTCAGAATAAA+AGG | 0.220895 | 7.4:+74179132 | MS.gene86674:CDS |
CATACCTTCAACCCGTTACT+TGG | 0.318720 | 7.4:+74186666 | MS.gene86674:CDS |
CTCCTAGACAGATTGATGTT+TGG | 0.363835 | 7.4:+74179117 | MS.gene86674:CDS |
TATTGATCTGCCACTGAATC+TGG | 0.364883 | 7.4:-74186642 | None:intergenic |
AAATCACAATCAACATTGAT+TGG | 0.400197 | 7.4:-74186170 | None:intergenic |
CTGGTTTCGTCCCAAGTAAC+GGG | 0.406535 | 7.4:-74186677 | None:intergenic |
AACATAGGTTGCAGTTAAGC+AGG | 0.427466 | 7.4:+74179081 | MS.gene86674:CDS |
CTTCTAATACAGATTATATG+AGG | 0.451700 | 7.4:+74178895 | MS.gene86674:CDS |
CGTCCCAAGTAACGGGTTGA+AGG | 0.466739 | 7.4:-74186670 | None:intergenic |
TCTGGTTTCGTCCCAAGTAA+CGG | 0.484246 | 7.4:-74186678 | None:intergenic |
GAATAAAAGGGCTCAGATGA+AGG | 0.502319 | 7.4:+74179145 | MS.gene86674:CDS |
ATCTGAGAATATAGCTATGA+GGG | 0.523034 | 7.4:+74186106 | MS.gene86674:CDS |
ACACTCCTCGTCAGATTCAA+AGG | 0.528470 | 7.4:+74178937 | MS.gene86674:CDS |
AAGCAGACACGAGAAGAAAG+AGG | 0.531686 | 7.4:+74186044 | MS.gene86674:intron |
GATCTGAGAATATAGCTATG+AGG | 0.531988 | 7.4:+74186105 | MS.gene86674:CDS |
CACATCCTTGTGAACAACAT+AGG | 0.537997 | 7.4:+74179066 | MS.gene86674:CDS |
ATACCTTCAACCCGTTACTT+GGG | 0.567944 | 7.4:+74186667 | MS.gene86674:CDS |
AACCAAACATCAATCTGTCT+AGG | 0.586256 | 7.4:-74179119 | None:intergenic |
TCACAATCAACATTGATTGG+AGG | 0.587576 | 7.4:-74186167 | None:intergenic |
AAAATTCTATTCTGATGAGA+CGG | 0.588765 | 7.4:+74186712 | MS.gene86674:CDS |
TGTTTGGTTTCAGAATAAAA+GGG | 0.598282 | 7.4:+74179133 | MS.gene86674:CDS |
ATCAATCTGTCTAGGAGACA+AGG | 0.602937 | 7.4:-74179111 | None:intergenic |
AGCATTGTAGCCAGATTCAG+TGG | 0.621323 | 7.4:+74186632 | MS.gene86674:CDS |
TGCAACCTATGTTGTTCACA+AGG | 0.621373 | 7.4:-74179071 | None:intergenic |
CTTATGGAGCATCACAGTGA+AGG | 0.621938 | 7.4:+74178864 | None:intergenic |
ACATAGGTTGCAGTTAAGCA+GGG | 0.638853 | 7.4:+74179082 | MS.gene86674:CDS |
TCAAGCCTTTGAATCTGACG+AGG | 0.643299 | 7.4:-74178942 | None:intergenic |
AATGTTATCTGCAGCACTTG+TGG | 0.647495 | 7.4:+74186140 | MS.gene86674:CDS |
ACTTCATCTAGATGCCGCCA+CGG | 0.659844 | 7.4:-74186745 | None:intergenic |
GAATCTGACGAGGAGTGTGA+CGG | 0.662551 | 7.4:-74178932 | None:intergenic |
GTTATCTGCAGCACTTGTGG+TGG | 0.684640 | 7.4:+74186143 | MS.gene86674:CDS |
ACGGCAAGAGCACACCGTGG+CGG | 0.705845 | 7.4:+74186731 | MS.gene86674:CDS |
GAGACGGCAAGAGCACACCG+TGG | 0.814166 | 7.4:+74186728 | MS.gene86674:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 74178867 | 74186760 | 74178867 | ID=MS.gene86674 |
chr7.4 | mRNA | 74178867 | 74186760 | 74178867 | ID=MS.gene86674.t1;Parent=MS.gene86674 |
chr7.4 | exon | 74178867 | 74178967 | 74178867 | ID=MS.gene86674.t1.exon1;Parent=MS.gene86674.t1 |
chr7.4 | CDS | 74178867 | 74178967 | 74178867 | ID=cds.MS.gene86674.t1;Parent=MS.gene86674.t1 |
chr7.4 | exon | 74179049 | 74179166 | 74179049 | ID=MS.gene86674.t1.exon2;Parent=MS.gene86674.t1 |
chr7.4 | CDS | 74179049 | 74179166 | 74179049 | ID=cds.MS.gene86674.t1;Parent=MS.gene86674.t1 |
chr7.4 | exon | 74186050 | 74186238 | 74186050 | ID=MS.gene86674.t1.exon3;Parent=MS.gene86674.t1 |
chr7.4 | CDS | 74186050 | 74186238 | 74186050 | ID=cds.MS.gene86674.t1;Parent=MS.gene86674.t1 |
chr7.4 | exon | 74186617 | 74186760 | 74186617 | ID=MS.gene86674.t1.exon4;Parent=MS.gene86674.t1 |
chr7.4 | CDS | 74186617 | 74186760 | 74186617 | ID=cds.MS.gene86674.t1;Parent=MS.gene86674.t1 |
Gene Sequence |
Protein sequence |