AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86697

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86697.t1 MTR_7g026650 94.364 550 29 2 25 573 633 1181 0.0 1067
MS.gene86697.t1 MTR_3g071860 87.048 525 63 4 25 545 743 1266 0.0 930
MS.gene86697.t1 MTR_1g081750 77.481 524 114 4 24 546 596 1116 0.0 822
MS.gene86697.t1 MTR_5g083300 74.905 526 124 5 25 545 818 1340 0.0 807
MS.gene86697.t1 MTR_5g083300 74.905 526 124 5 25 545 781 1303 0.0 805
MS.gene86697.t1 MTR_7g026620 64.471 425 75 8 25 449 296 644 7.80e-168 491
MS.gene86697.t1 MTR_7g026550 48.579 387 48 7 46 426 126 367 8.86e-91 284
MS.gene86697.t1 MTR_7g450820 35.171 526 283 17 27 526 720 1213 4.46e-73 254
MS.gene86697.t1 MTR_7g450790 32.336 535 321 13 27 545 930 1439 2.56e-71 249
MS.gene86697.t1 MTR_7g029525 30.654 535 330 11 27 545 815 1324 3.64e-70 246
MS.gene86697.t1 MTR_7g450860 31.827 531 303 13 27 534 765 1259 1.42e-69 244
MS.gene86697.t1 MTR_7g050445 32.528 538 320 12 27 545 785 1298 2.89e-69 243
MS.gene86697.t1 MTR_7g450780 30.556 540 314 12 27 534 822 1332 6.24e-66 233
MS.gene86697.t1 MTR_2g437480 32.231 484 279 12 24 501 561 1001 1.28e-63 226
MS.gene86697.t1 MTR_8g037345 32.359 479 282 11 26 501 413 852 1.24e-62 222
MS.gene86697.t1 MTR_4g088650 30.467 535 309 12 27 545 731 1218 4.20e-62 222
MS.gene86697.t1 MTR_3g071660 61.207 116 28 1 125 240 1 99 2.51e-34 126
MS.gene86697.t1 MTR_5g020000 26.032 557 323 18 28 570 236 717 1.00e-26 115
MS.gene86697.t1 MTR_8g094070 27.404 416 242 17 112 493 492 881 3.69e-25 111
MS.gene86697.t1 MTR_8g094070 27.404 416 242 17 112 493 492 881 4.15e-25 110
MS.gene86697.t1 MTR_4g078495 27.009 448 239 17 136 515 263 690 2.93e-20 95.5
MS.gene86697.t1 MTR_4g078460 27.232 448 238 17 136 515 549 976 3.18e-20 95.9
MS.gene86697.t1 MTR_5g005840 24.118 510 294 14 28 528 416 841 3.67e-20 95.5
MS.gene86697.t1 MTR_1g080420 34.969 163 94 4 353 506 1122 1281 9.60e-19 91.3
MS.gene86697.t1 MTR_1g080420 34.969 163 94 4 353 506 991 1150 1.06e-18 90.9
MS.gene86697.t1 MTR_5g004720 29.231 195 125 4 363 553 555 740 1.49e-18 90.1
MS.gene86697.t1 MTR_3g071670 49.505 101 14 3 209 309 2 65 1.90e-18 80.1
MS.gene86697.t1 MTR_4g096930 24.951 513 287 22 26 517 784 1219 4.61e-18 89.0
MS.gene86697.t1 MTR_1g105050 24.839 467 264 13 28 484 429 818 7.82e-17 84.7
MS.gene86697.t1 MTR_2g084695 33.333 162 71 3 387 545 163 290 8.40e-17 81.6
MS.gene86697.t1 MTR_3g106210 23.656 465 284 15 28 484 341 742 2.51e-15 80.1
MS.gene86697.t1 MTR_3g106210 23.656 465 284 15 28 484 341 742 2.51e-15 80.1
MS.gene86697.t1 MTR_3g106210 23.983 467 280 14 28 484 341 742 3.10e-15 80.1
MS.gene86697.t1 MTR_3g106210 23.983 467 280 14 28 484 341 742 3.38e-15 79.7
MS.gene86697.t1 MTR_1g013190 30.814 172 105 4 314 484 582 740 4.15e-14 76.3
MS.gene86697.t1 MTR_4g118720 22.171 433 298 10 136 563 1132 1530 9.40e-13 72.0
MS.gene86697.t1 MTR_3g053910 29.670 182 117 4 314 493 885 1057 2.02e-12 70.9
MS.gene86697.t1 MTR_3g053910 29.670 182 117 4 314 493 856 1028 2.03e-12 70.9
MS.gene86697.t1 MTR_5g090090 30.168 179 114 4 314 490 902 1071 2.69e-12 70.5
MS.gene86697.t1 MTR_5g090090 30.168 179 114 4 314 490 902 1071 2.93e-12 70.5
MS.gene86697.t1 MTR_1g069755 30.714 140 91 3 362 501 750 883 6.80e-12 68.9
MS.gene86697.t1 MTR_7g090960 30.682 176 114 5 328 502 1173 1341 8.46e-12 68.9
MS.gene86697.t1 MTR_7g090960 30.682 176 114 5 328 502 1092 1260 8.95e-12 68.9
MS.gene86697.t1 MTR_2g084630 35.833 120 71 3 365 484 874 987 1.04e-11 68.6
MS.gene86697.t1 MTR_3g071695 63.265 49 18 0 502 550 11 59 1.10e-11 61.2
MS.gene86697.t1 MTR_7g089190 39.362 94 56 1 392 484 690 783 2.83e-11 67.0
MS.gene86697.t1 MTR_1g044120 30.612 147 94 4 340 484 978 1118 3.10e-11 67.0
MS.gene86697.t1 MTR_4g035100 29.932 147 94 4 361 504 1826 1966 8.03e-11 65.9
MS.gene86697.t1 MTR_4g035100 29.932 147 94 4 361 504 1826 1966 8.23e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86697.t1 AT3G42670 70.690 522 147 6 25 544 736 1253 0.0 746
MS.gene86697.t1 AT3G42670 70.307 522 149 5 25 544 738 1255 0.0 746
MS.gene86697.t1 AT3G42670 70.690 522 147 6 25 544 736 1253 0.0 746
MS.gene86697.t1 AT3G42670 70.690 522 147 6 25 544 736 1253 0.0 746
MS.gene86697.t1 AT5G20420 69.216 523 156 4 25 545 741 1260 0.0 738
MS.gene86697.t1 AT1G05490 31.939 526 308 13 26 530 888 1384 2.05e-73 255
MS.gene86697.t1 AT3G24340 32.812 512 301 9 27 534 642 1114 3.38e-70 245
MS.gene86697.t1 AT2G16390 32.996 494 269 15 24 501 400 847 2.49e-61 218
MS.gene86697.t1 AT2G16390 32.996 494 269 15 24 501 403 850 3.36e-61 218
MS.gene86697.t1 AT2G21450 31.693 508 291 15 12 501 213 682 5.34e-61 215
MS.gene86697.t1 AT2G21450 31.693 508 291 15 12 501 304 773 1.78e-60 215
MS.gene86697.t1 AT2G21450 31.693 508 291 15 12 501 311 780 2.18e-60 214
MS.gene86697.t1 AT5G63950 25.703 498 290 18 25 493 426 872 5.70e-25 110
MS.gene86697.t1 AT5G63950 25.859 495 276 20 25 493 426 855 1.44e-23 106
MS.gene86697.t1 AT3G19210 30.168 179 110 4 354 525 536 706 3.23e-18 89.4
MS.gene86697.t1 AT3G19210 30.168 179 110 4 354 525 534 704 3.46e-18 89.0
MS.gene86697.t1 AT3G19210 30.168 179 110 4 354 525 536 706 4.91e-18 88.6
MS.gene86697.t1 AT1G08600 34.756 164 93 5 353 506 1123 1282 6.10e-18 88.6
MS.gene86697.t1 AT1G08600 26.744 172 95 4 25 190 780 926 2.76e-12 70.5
MS.gene86697.t1 AT1G08600 34.756 164 93 5 353 506 1123 1282 6.10e-18 88.6
MS.gene86697.t1 AT1G08600 26.744 172 95 4 25 190 780 926 2.76e-12 70.5
MS.gene86697.t1 AT1G08600 34.756 164 93 5 353 506 1123 1282 6.10e-18 88.6
MS.gene86697.t1 AT1G08600 26.744 172 95 4 25 190 780 926 2.76e-12 70.5
MS.gene86697.t1 AT1G08600 34.756 164 93 5 353 506 1102 1261 6.40e-18 88.6
MS.gene86697.t1 AT5G66750 31.892 185 119 4 361 544 538 716 6.58e-17 85.1
MS.gene86697.t1 AT3G06010 23.954 526 276 17 28 528 456 882 1.28e-16 84.3
MS.gene86697.t1 AT4G31900 23.529 493 270 18 7 484 215 615 3.35e-16 82.8
MS.gene86697.t1 AT1G03750 29.834 181 113 5 343 515 523 697 2.78e-15 79.7
MS.gene86697.t1 AT2G25170 25.967 362 202 13 136 484 445 753 4.25e-15 79.7
MS.gene86697.t1 AT2G25170 25.479 365 200 13 136 484 419 727 4.33e-15 79.3
MS.gene86697.t1 AT2G25170 25.479 365 200 13 136 484 419 727 4.33e-15 79.3
MS.gene86697.t1 AT2G25170 25.967 362 202 13 136 484 436 744 4.35e-15 79.3
MS.gene86697.t1 AT5G05130 35.772 123 73 3 363 484 725 842 1.05e-12 71.6
MS.gene86697.t1 AT3G57300 33.793 145 90 3 363 507 1222 1360 1.06e-12 72.0
MS.gene86697.t1 AT3G57300 33.793 145 90 3 363 507 1222 1360 1.06e-12 72.0
MS.gene86697.t1 AT3G57300 33.793 145 90 3 363 507 1255 1393 1.27e-12 71.6
MS.gene86697.t1 AT2G13370 34.615 130 78 2 365 493 957 1080 2.13e-12 70.9
MS.gene86697.t1 AT2G13370 34.615 130 78 2 365 493 957 1080 2.13e-12 70.9
MS.gene86697.t1 AT2G13370 34.615 130 78 2 365 493 957 1080 2.13e-12 70.9
MS.gene86697.t1 AT5G19310 29.843 191 121 4 344 533 427 605 2.35e-12 70.5
MS.gene86697.t1 AT5G19310 29.843 191 121 4 344 533 691 869 2.39e-12 70.5
MS.gene86697.t1 AT5G43530 32.237 152 93 5 336 484 1098 1242 3.99e-12 70.1
MS.gene86697.t1 AT2G44980 24.346 382 239 12 137 507 181 523 7.63e-12 68.9
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 867 934 9.05e-12 68.9
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G18760 47.059 68 36 0 434 501 808 875 9.90e-12 68.6
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1102 1249 2.28e-11 67.8
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1101 1248 2.30e-11 67.8
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1101 1248 2.30e-11 67.8
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1101 1248 2.30e-11 67.8
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1101 1248 2.31e-11 67.8
MS.gene86697.t1 AT2G28290 33.766 154 94 4 379 530 1102 1249 2.41e-11 67.8

Find 96 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTGACTCAAAATTT+TGG 0.147986 7.4:-74645914 None:intergenic
GCTCAGAACAAATCTTATTT+TGG 0.176054 7.4:-74646915 None:intergenic
AGCACTTCGTGAACAAATTT+TGG 0.230747 7.4:-74646431 None:intergenic
GAATTGAGGATATTGCTTTC+TGG 0.244832 7.4:+74646353 MS.gene86697:CDS
AGGGCTTTCTCTCAAAGTTT+TGG 0.255357 7.4:-74646249 None:intergenic
CCTGGAGTTCCAAGACCTTC+TGG 0.279541 7.4:+74646089 MS.gene86697:CDS
TGGTGATGTAAAACATGTTT+TGG 0.329183 7.4:+74646109 MS.gene86697:CDS
ACAGAAACTGCAGAAGAAAA+TGG 0.339883 7.4:+74646730 MS.gene86697:CDS
AAATACTTTCAATGGCAAAA+TGG 0.340921 7.4:+74647025 MS.gene86697:CDS
CTCTACCTCGAGAGGGTAAC+TGG 0.351257 7.4:-74646765 None:intergenic
CCAGGAAGAACTGTAGGTTT+TGG 0.352497 7.4:-74646071 None:intergenic
ATCAAATTTGATTTAAGAAA+AGG 0.357435 7.4:+74646890 MS.gene86697:CDS
TTGTGGAAGATCCTTCTAAA+TGG 0.362063 7.4:+74647386 MS.gene86697:CDS
AAAGAGGTTCTGCTACTTAC+TGG 0.365932 7.4:+74647049 MS.gene86697:CDS
CCTTCTAGAAGGATCAGATT+TGG 0.373446 7.4:+74647543 MS.gene86697:CDS
TTGGAGCCGTTGAATCTCCC+TGG 0.384705 7.4:-74646052 None:intergenic
AATTCCTATGATACACTTCC+TGG 0.389955 7.4:+74646653 MS.gene86697:CDS
AAGGTTGAGGAAATGCTTAA+TGG 0.392142 7.4:+74646319 MS.gene86697:CDS
TCATCGAGTATCAAGATTCC+AGG 0.395157 7.4:-74646269 None:intergenic
TTCATCGACGTTTATGAAAG+TGG 0.402935 7.4:+74646629 MS.gene86697:CDS
CATGTGTAGAGTGTGGATTT+TGG 0.409725 7.4:-74645966 None:intergenic
TATTTGAGAAATACTTTCAA+TGG 0.412834 7.4:+74647017 MS.gene86697:CDS
GCAGTATTTGCTTGAGGCGC+GGG 0.414671 7.4:+74646505 MS.gene86697:CDS
CCAAAACCTACAGTTCTTCC+TGG 0.418795 7.4:+74646071 MS.gene86697:CDS
TTGAATCTCCCTGGGTTTGA+CGG 0.427836 7.4:-74646043 None:intergenic
TAAACCAGGAAGTGTATCAT+AGG 0.436168 7.4:-74646657 None:intergenic
TTATGCAGTCACAATCTGTT+AGG 0.436457 7.4:+74647566 MS.gene86697:CDS
GATCTAGATTTGTTTGAAAG+AGG 0.437409 7.4:+74647073 MS.gene86697:CDS
CCAAATCTGATCCTTCTAGA+AGG 0.453881 7.4:-74647543 None:intergenic
GGACAGCAAGGCCTTCTAGA+AGG 0.458099 7.4:+74647532 MS.gene86697:CDS
TATGATTATGAAGAATGAAA+AGG 0.468297 7.4:+74647477 MS.gene86697:CDS
TGGAGCCGTTGAATCTCCCT+GGG 0.472476 7.4:-74646051 None:intergenic
AGCAATATCCTCAATTCTGT+TGG 0.476532 7.4:-74646347 None:intergenic
CTCCCTGGGTTTGACGGCCA+TGG 0.476982 7.4:-74646037 None:intergenic
AGATTGAAGATGAAATACTT+AGG 0.478427 7.4:+74647419 MS.gene86697:CDS
CACCCAAGTGTTCTTGTCAT+GGG 0.480183 7.4:+74646164 MS.gene86697:CDS
TCAATCAATGCTTGTGCTGA+AGG 0.485374 7.4:+74647151 MS.gene86697:CDS
CGCAGTATTTGCTTGAGGCG+CGG 0.486419 7.4:+74646504 MS.gene86697:CDS
TCAATGGCAAAATGGAAAAG+AGG 0.487364 7.4:+74647033 MS.gene86697:CDS
GATTGAAGATGAAATACTTA+GGG 0.488087 7.4:+74647420 MS.gene86697:CDS
TTTACATCACCAGAAGGTCT+TGG 0.492630 7.4:-74646098 None:intergenic
ATAAGTATCGAAGAACTACT+TGG 0.498443 7.4:+74647326 MS.gene86697:CDS
ACACCCAAGTGTTCTTGTCA+TGG 0.498705 7.4:+74646163 MS.gene86697:CDS
TGGATCTTCCAACAGAATTG+AGG 0.499821 7.4:+74646339 MS.gene86697:CDS
ATTTGTTCACGAAGTGCTAC+GGG 0.503512 7.4:+74646436 MS.gene86697:CDS
AATTTGTTCACGAAGTGCTA+CGG 0.516489 7.4:+74646435 MS.gene86697:CDS
ACCATGGATGTATCGATCCA+AGG 0.517448 7.4:-74646799 None:intergenic
GTTATTGACGAGCGGGTCGA+TGG 0.518171 7.4:+74647297 MS.gene86697:CDS
ATCAAAAGCTCTACCTCGAG+AGG 0.518482 7.4:-74646773 None:intergenic
TTGCCGAAGTTGAATTGAAG+AGG 0.526507 7.4:+74646858 MS.gene86697:CDS
ATCCTAGAAGCACAAAATCA+AGG 0.529986 7.4:+74646300 MS.gene86697:CDS
TGGATAAGATACACGGGCAC+AGG 0.534993 7.4:-74646017 None:intergenic
TATCCATGGCCGTCAAACCC+AGG 0.536513 7.4:+74646034 MS.gene86697:CDS
AGATGAAATACTTAGGGAGA+TGG 0.537029 7.4:+74647426 MS.gene86697:CDS
CCAGAAGGTCTTGGAACTCC+AGG 0.539229 7.4:-74646089 None:intergenic
TATAATCTCAAGCTGTTCAT+CGG 0.543979 7.4:-74646708 None:intergenic
ATTTGCTTGAGGCGCGGGCG+AGG 0.548304 7.4:+74646510 MS.gene86697:CDS
CCATGGATGTATCGATCCAA+GGG 0.557758 7.4:-74646798 None:intergenic
GTGCCCGTGTATCTTATCCA+TGG 0.557832 7.4:+74646020 MS.gene86697:CDS
TGTATCAGTTATTGACGAGC+GGG 0.565992 7.4:+74647290 MS.gene86697:CDS
GGAACTCCAGGAAGAACTGT+AGG 0.566708 7.4:-74646077 None:intergenic
AAGAACTACTTGGAAAGAGT+GGG 0.567137 7.4:+74647336 MS.gene86697:CDS
TAGCCTCTTCAATTCAACTT+CGG 0.570637 7.4:-74646861 None:intergenic
AGTTAGATTCTAAATACTTG+AGG 0.571456 7.4:+74646459 MS.gene86697:CDS
GAAGCACAAAATCAAGGTTG+AGG 0.573069 7.4:+74646306 MS.gene86697:CDS
GGAATCTTGATACTCGATGA+AGG 0.575339 7.4:+74646272 MS.gene86697:CDS
TAACCCATGACAAGAACACT+TGG 0.578125 7.4:-74646167 None:intergenic
GAAGAACTACTTGGAAAGAG+TGG 0.579673 7.4:+74647335 MS.gene86697:CDS
ATCCATGGCCGTCAAACCCA+GGG 0.580571 7.4:+74646035 MS.gene86697:CDS
CCCTTGGATCGATACATCCA+TGG 0.580673 7.4:+74646798 MS.gene86697:CDS
AATATGCCGCGTCATACAGA+AGG 0.582922 7.4:+74647511 MS.gene86697:CDS
ACTTAGGGAGATGGTTGAAG+AGG 0.582988 7.4:+74647435 MS.gene86697:CDS
GAAAGCGCAGTATTTGCTTG+AGG 0.583389 7.4:+74646499 MS.gene86697:CDS
ATTGACGAGCGGGTCGATGG+AGG 0.586820 7.4:+74647300 MS.gene86697:CDS
GTTGAATTGAAGAGGCTAGA+CGG 0.597847 7.4:+74646866 MS.gene86697:CDS
AGTGTATATATTTGTAAACC+AGG 0.603594 7.4:-74646671 None:intergenic
CATCGAGTATCAAGATTCCA+GGG 0.607401 7.4:-74646268 None:intergenic
ATTTGCACACAGAAAGTACA+TGG 0.612438 7.4:+74646226 MS.gene86697:CDS
CAAAATCCACACTCTACACA+TGG 0.614228 7.4:+74645967 MS.gene86697:CDS
TCAAACCCAGGGAGATTCAA+CGG 0.614797 7.4:+74646046 MS.gene86697:CDS
AAAACTTTGAGAGAAAGCCC+TGG 0.619123 7.4:+74646251 MS.gene86697:CDS
GTGTATCAGTTATTGACGAG+CGG 0.624664 7.4:+74647289 MS.gene86697:CDS
GATTCTAAATACTTGAGGAG+AGG 0.628538 7.4:+74646464 MS.gene86697:CDS
TCAAAAGCTCTACCTCGAGA+GGG 0.652702 7.4:-74646772 None:intergenic
TTGGCAAGATCGTAGTACGA+TGG 0.659653 7.4:-74645880 None:intergenic
CGTCATACAGAAGGACAGCA+AGG 0.659839 7.4:+74647520 MS.gene86697:CDS
CGGCCATGGATAAGATACAC+GGG 0.663478 7.4:-74646023 None:intergenic
TACCACCAGTTACCCTCTCG+AGG 0.667880 7.4:+74646760 MS.gene86697:CDS
ACGGCCATGGATAAGATACA+CGG 0.672732 7.4:-74646024 None:intergenic
TGCTGTCCTTCTGTATGACG+CGG 0.674632 7.4:-74647517 None:intergenic
AGTATCTTCGAACCGCTGCG+AGG 0.675132 7.4:-74647121 None:intergenic
TTTGCACCATGTGTAGAGTG+TGG 0.676984 7.4:-74645973 None:intergenic
AACCCATGACAAGAACACTT+GGG 0.686552 7.4:-74646166 None:intergenic
AATCAACTCAGATAACGATG+AGG 0.714220 7.4:+74646562 MS.gene86697:CDS
AAGTTTGTAGATCCTCGCAG+CGG 0.739677 7.4:+74647109 MS.gene86697:CDS
TACCTCGAGAGGGTAACTGG+TGG 0.749946 7.4:-74646762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATTTGATTTAAGAAA+AGG + chr7.4:74646890-74646909 MS.gene86697:CDS 15.0%
!! TATGATTATGAAGAATGAAA+AGG + chr7.4:74647477-74647496 MS.gene86697:CDS 20.0%
!! TATTTGAGAAATACTTTCAA+TGG + chr7.4:74647017-74647036 MS.gene86697:CDS 20.0%
!!! TGAAAATTGACTCAAAATTT+TGG - chr7.4:74645917-74645936 None:intergenic 20.0%
! AAATACTTTCAATGGCAAAA+TGG + chr7.4:74647025-74647044 MS.gene86697:CDS 25.0%
! AGATTGAAGATGAAATACTT+AGG + chr7.4:74647419-74647438 MS.gene86697:CDS 25.0%
! AGTGTATATATTTGTAAACC+AGG - chr7.4:74646674-74646693 None:intergenic 25.0%
! AGTTAGATTCTAAATACTTG+AGG + chr7.4:74646459-74646478 MS.gene86697:CDS 25.0%
! GATTGAAGATGAAATACTTA+GGG + chr7.4:74647420-74647439 MS.gene86697:CDS 25.0%
!! TTTTGTATCTTGTCTCATTA+AGG - chr7.4:74646207-74646226 None:intergenic 25.0%
!!! TGATTTTTTTGGATTCTGAA+TGG + chr7.4:74647200-74647219 MS.gene86697:CDS 25.0%
AACTCTATGAAAAATCTCAC+AGG - chr7.4:74646998-74647017 None:intergenic 30.0%
ACGTGTAGTGAAAAATGAAA+AGG + chr7.4:74646946-74646965 MS.gene86697:CDS 30.0%
GTCTTGGAAAAATACAAAAG+TGG + chr7.4:74646135-74646154 MS.gene86697:CDS 30.0%
TATAATCTCAAGCTGTTCAT+CGG - chr7.4:74646711-74646730 None:intergenic 30.0%
! GATCTAGATTTGTTTGAAAG+AGG + chr7.4:74647073-74647092 MS.gene86697:CDS 30.0%
!! AAACATGTTTTGGATTGTCT+TGG + chr7.4:74646119-74646138 MS.gene86697:CDS 30.0%
!! ATAAGTATCGAAGAACTACT+TGG + chr7.4:74647326-74647345 MS.gene86697:CDS 30.0%
!! GCTCAGAACAAATCTTATTT+TGG - chr7.4:74646918-74646937 None:intergenic 30.0%
!! TGGTGATGTAAAACATGTTT+TGG + chr7.4:74646109-74646128 MS.gene86697:CDS 30.0%
!!! AGCTTCTAGAGTGATTTTTT+TGG + chr7.4:74647189-74647208 MS.gene86697:CDS 30.0%
!!! ATAGCTTGCTTTGTTTTTGA+AGG - chr7.4:74647229-74647248 None:intergenic 30.0%
!!! TTCTTGCATGATTTTTAGTG+AGG + chr7.4:74647360-74647379 MS.gene86697:CDS 30.0%
AACGATGAGGAAAAAATGCA+GGG + chr7.4:74646575-74646594 MS.gene86697:CDS 35.0%
AAGAACTACTTGGAAAGAGT+GGG + chr7.4:74647336-74647355 MS.gene86697:CDS 35.0%
AAGGTTGAGGAAATGCTTAA+TGG + chr7.4:74646319-74646338 MS.gene86697:CDS 35.0%
AATCAACTCAGATAACGATG+AGG + chr7.4:74646562-74646581 MS.gene86697:CDS 35.0%
AATTCCTATGATACACTTCC+TGG + chr7.4:74646653-74646672 MS.gene86697:CDS 35.0%
ACAGAAACTGCAGAAGAAAA+TGG + chr7.4:74646730-74646749 MS.gene86697:CDS 35.0%
AGATGAAATACTTAGGGAGA+TGG + chr7.4:74647426-74647445 MS.gene86697:CDS 35.0%
AGCAATATCCTCAATTCTGT+TGG - chr7.4:74646350-74646369 None:intergenic 35.0%
GAATTGAGGATATTGCTTTC+TGG + chr7.4:74646353-74646372 MS.gene86697:CDS 35.0%
GATTCTAAATACTTGAGGAG+AGG + chr7.4:74646464-74646483 MS.gene86697:CDS 35.0%
GCAAAAAACTTATCTGCACA+TGG - chr7.4:74646842-74646861 None:intergenic 35.0%
GGTGCAAAGAGTTCAAAAAA+TGG + chr7.4:74645988-74646007 MS.gene86697:CDS 35.0%
TAACGATGAGGAAAAAATGC+AGG + chr7.4:74646574-74646593 MS.gene86697:CDS 35.0%
TAGCCTCTTCAATTCAACTT+CGG - chr7.4:74646864-74646883 None:intergenic 35.0%
TCAATGGCAAAATGGAAAAG+AGG + chr7.4:74647033-74647052 MS.gene86697:CDS 35.0%
TTATGCAGTCACAATCTGTT+AGG + chr7.4:74647566-74647585 MS.gene86697:CDS 35.0%
TTCATCGACGTTTATGAAAG+TGG + chr7.4:74646629-74646648 MS.gene86697:CDS 35.0%
TTGTGGAAGATCCTTCTAAA+TGG + chr7.4:74647386-74647405 MS.gene86697:CDS 35.0%
! AACCTTGATTTTGTGCTTCT+AGG - chr7.4:74646305-74646324 None:intergenic 35.0%
! AATTTGTTCACGAAGTGCTA+CGG + chr7.4:74646435-74646454 MS.gene86697:CDS 35.0%
! ACATGTTTTACATCACCAGA+AGG - chr7.4:74646107-74646126 None:intergenic 35.0%
! AGCACTTCGTGAACAAATTT+TGG - chr7.4:74646434-74646453 None:intergenic 35.0%
! ATCCTAGAAGCACAAAATCA+AGG + chr7.4:74646300-74646319 MS.gene86697:CDS 35.0%
! ATTTGCACACAGAAAGTACA+TGG + chr7.4:74646226-74646245 MS.gene86697:CDS 35.0%
! TAAACCAGGAAGTGTATCAT+AGG - chr7.4:74646660-74646679 None:intergenic 35.0%
! TTTTCACTACACGTGAGATT+AGG - chr7.4:74646940-74646959 None:intergenic 35.0%
!! AATTTTGGAAGCTGGAGTTT+TGG - chr7.4:74645902-74645921 None:intergenic 35.0%
!! TGACTCAAAATTTTGGAAGC+TGG - chr7.4:74645910-74645929 None:intergenic 35.0%
!! TTTTCTGCTTGCCATTTAGA+AGG - chr7.4:74647400-74647419 None:intergenic 35.0%
!!! GATTTTTAGTGAGGAGTTTG+TGG + chr7.4:74647369-74647388 MS.gene86697:CDS 35.0%
!!! TAAACCATTTTTTGCTGACC+AGG - chr7.4:74647268-74647287 None:intergenic 35.0%
AACCCATGACAAGAACACTT+GGG - chr7.4:74646169-74646188 None:intergenic 40.0%
CAAAATCCACACTCTACACA+TGG + chr7.4:74645967-74645986 MS.gene86697:CDS 40.0%
CATCGAGTATCAAGATTCCA+GGG - chr7.4:74646271-74646290 None:intergenic 40.0%
CCAAATCTGATCCTTCTAGA+AGG - chr7.4:74647546-74647565 None:intergenic 40.0%
GAAGAACTACTTGGAAAGAG+TGG + chr7.4:74647335-74647354 MS.gene86697:CDS 40.0%
GAAGCACAAAATCAAGGTTG+AGG + chr7.4:74646306-74646325 MS.gene86697:CDS 40.0%
GGAATCTTGATACTCGATGA+AGG + chr7.4:74646272-74646291 MS.gene86697:CDS 40.0%
GTGTATCAGTTATTGACGAG+CGG + chr7.4:74647289-74647308 MS.gene86697:CDS 40.0%
GTTGAATTGAAGAGGCTAGA+CGG + chr7.4:74646866-74646885 MS.gene86697:CDS 40.0%
TAACCCATGACAAGAACACT+TGG - chr7.4:74646170-74646189 None:intergenic 40.0%
TCAATCAATGCTTGTGCTGA+AGG + chr7.4:74647151-74647170 MS.gene86697:CDS 40.0%
TCATCGAGTATCAAGATTCC+AGG - chr7.4:74646272-74646291 None:intergenic 40.0%
TGAAAAATCTCACAGGTGCA+AGG - chr7.4:74646991-74647010 None:intergenic 40.0%
TGGATCTTCCAACAGAATTG+AGG + chr7.4:74646339-74646358 MS.gene86697:CDS 40.0%
TGTATCAGTTATTGACGAGC+GGG + chr7.4:74647290-74647309 MS.gene86697:CDS 40.0%
TTGCCGAAGTTGAATTGAAG+AGG + chr7.4:74646858-74646877 MS.gene86697:CDS 40.0%
TTTACATCACCAGAAGGTCT+TGG - chr7.4:74646101-74646120 None:intergenic 40.0%
! AAAACTTTGAGAGAAAGCCC+TGG + chr7.4:74646251-74646270 MS.gene86697:CDS 40.0%
! AAAGAGGTTCTGCTACTTAC+TGG + chr7.4:74647049-74647068 MS.gene86697:CDS 40.0%
! AGGGCTTTCTCTCAAAGTTT+TGG - chr7.4:74646252-74646271 None:intergenic 40.0%
! ATTTGTTCACGAAGTGCTAC+GGG + chr7.4:74646436-74646455 MS.gene86697:CDS 40.0%
! CATGTGTAGAGTGTGGATTT+TGG - chr7.4:74645969-74645988 None:intergenic 40.0%
! CCTTCTAGAAGGATCAGATT+TGG + chr7.4:74647543-74647562 MS.gene86697:CDS 40.0%
!! GTAGAGCTTTTGATAACCCT+TGG + chr7.4:74646782-74646801 MS.gene86697:CDS 40.0%
!!! GATTTTGGAGCAAGGACTAA+TGG - chr7.4:74645954-74645973 None:intergenic 40.0%
!!! GTTGCTGTTTTGATCAACCA+TGG - chr7.4:74646818-74646837 None:intergenic 40.0%
AAGTTTGTAGATCCTCGCAG+CGG + chr7.4:74647109-74647128 MS.gene86697:CDS 45.0%
AATATGCCGCGTCATACAGA+AGG + chr7.4:74647511-74647530 MS.gene86697:CDS 45.0%
ACACCCAAGTGTTCTTGTCA+TGG + chr7.4:74646163-74646182 MS.gene86697:CDS 45.0%
ACGGCCATGGATAAGATACA+CGG - chr7.4:74646027-74646046 None:intergenic 45.0%
ACTTAGGGAGATGGTTGAAG+AGG + chr7.4:74647435-74647454 MS.gene86697:CDS 45.0%
ATCAAAAGCTCTACCTCGAG+AGG - chr7.4:74646776-74646795 None:intergenic 45.0%
CACCCAAGTGTTCTTGTCAT+GGG + chr7.4:74646164-74646183 MS.gene86697:CDS 45.0%
CCAAAACCTACAGTTCTTCC+TGG + chr7.4:74646071-74646090 MS.gene86697:CDS 45.0%
TCAAAAGCTCTACCTCGAGA+GGG - chr7.4:74646775-74646794 None:intergenic 45.0%
TCAAACCCAGGGAGATTCAA+CGG + chr7.4:74646046-74646065 MS.gene86697:CDS 45.0%
TCGTCCTGGTCAGCAAAAAA+TGG + chr7.4:74647261-74647280 MS.gene86697:CDS 45.0%
TTGAATCTCCCTGGGTTTGA+CGG - chr7.4:74646046-74646065 None:intergenic 45.0%
TTGGCAAGATCGTAGTACGA+TGG - chr7.4:74645883-74645902 None:intergenic 45.0%
TTTGCACCATGTGTAGAGTG+TGG - chr7.4:74645976-74645995 None:intergenic 45.0%
! ACCATGGATGTATCGATCCA+AGG - chr7.4:74646802-74646821 None:intergenic 45.0%
! CCAGGAAGAACTGTAGGTTT+TGG - chr7.4:74646074-74646093 None:intergenic 45.0%
! CCATGGATGTATCGATCCAA+GGG - chr7.4:74646801-74646820 None:intergenic 45.0%
! GAAAGCGCAGTATTTGCTTG+AGG + chr7.4:74646499-74646518 MS.gene86697:CDS 45.0%
!!! AGAGTGTGGATTTTGGAGCA+AGG - chr7.4:74645962-74645981 None:intergenic 45.0%
CCCTTGGATCGATACATCCA+TGG + chr7.4:74646798-74646817 MS.gene86697:CDS 50.0%
CGGCCATGGATAAGATACAC+GGG - chr7.4:74646026-74646045 None:intergenic 50.0%
CGTCATACAGAAGGACAGCA+AGG + chr7.4:74647520-74647539 MS.gene86697:CDS 50.0%
GGAACTCCAGGAAGAACTGT+AGG - chr7.4:74646080-74646099 None:intergenic 50.0%
GTGCCCGTGTATCTTATCCA+TGG + chr7.4:74646020-74646039 MS.gene86697:CDS 50.0%
TGCTGTCCTTCTGTATGACG+CGG - chr7.4:74647520-74647539 None:intergenic 50.0%
TGGATAAGATACACGGGCAC+AGG - chr7.4:74646020-74646039 None:intergenic 50.0%
AGTATCTTCGAACCGCTGCG+AGG - chr7.4:74647124-74647143 None:intergenic 55.0%
ATCCATGGCCGTCAAACCCA+GGG + chr7.4:74646035-74646054 MS.gene86697:CDS 55.0%
CCAGAAGGTCTTGGAACTCC+AGG - chr7.4:74646092-74646111 None:intergenic 55.0%
CCTGGAGTTCCAAGACCTTC+TGG + chr7.4:74646089-74646108 MS.gene86697:CDS 55.0%
CGCAGTATTTGCTTGAGGCG+CGG + chr7.4:74646504-74646523 MS.gene86697:CDS 55.0%
CTCTACCTCGAGAGGGTAAC+TGG - chr7.4:74646768-74646787 None:intergenic 55.0%
GCAGTATTTGCTTGAGGCGC+GGG + chr7.4:74646505-74646524 MS.gene86697:CDS 55.0%
GGACAGCAAGGCCTTCTAGA+AGG + chr7.4:74647532-74647551 MS.gene86697:CDS 55.0%
GTTATTGACGAGCGGGTCGA+TGG + chr7.4:74647297-74647316 MS.gene86697:CDS 55.0%
TACCACCAGTTACCCTCTCG+AGG + chr7.4:74646760-74646779 MS.gene86697:CDS 55.0%
TACCTCGAGAGGGTAACTGG+TGG - chr7.4:74646765-74646784 None:intergenic 55.0%
TATCCATGGCCGTCAAACCC+AGG + chr7.4:74646034-74646053 MS.gene86697:CDS 55.0%
TGGAGCCGTTGAATCTCCCT+GGG - chr7.4:74646054-74646073 None:intergenic 55.0%
TTGGAGCCGTTGAATCTCCC+TGG - chr7.4:74646055-74646074 None:intergenic 55.0%
! ATTGCACGCGCTTTTCGTCC+TGG + chr7.4:74647247-74647266 MS.gene86697:CDS 55.0%
ATTGACGAGCGGGTCGATGG+AGG + chr7.4:74647300-74647319 MS.gene86697:CDS 60.0%
ATTTGCTTGAGGCGCGGGCG+AGG + chr7.4:74646510-74646529 MS.gene86697:CDS 65.0%
CTCCCTGGGTTTGACGGCCA+TGG - chr7.4:74646040-74646059 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 74645873 74647594 74645873 ID=MS.gene86697
chr7.4 mRNA 74645873 74647594 74645873 ID=MS.gene86697.t1;Parent=MS.gene86697
chr7.4 exon 74645873 74647594 74645873 ID=MS.gene86697.t1.exon1;Parent=MS.gene86697.t1
chr7.4 CDS 74645873 74647594 74645873 ID=cds.MS.gene86697.t1;Parent=MS.gene86697.t1
Gene Sequence

>MS.gene86697

ATGACATCCATCGTACTACGATCTTGCCAAAACTCCAGCTTCCAAAATTTTGAGTCAATTTTCAACACTGAGAAAAGACCATTAGTCCTTGCTCCAAAATCCACACTCTACACATGGTGCAAAGAGTTCAAAAAATGGAAAGTTCCTGTGCCCGTGTATCTTATCCATGGCCGTCAAACCCAGGGAGATTCAACGGCTCCAAAACCTACAGTTCTTCCTGGAGTTCCAAGACCTTCTGGTGATGTAAAACATGTTTTGGATTGTCTTGGAAAAATACAAAAGTGGCATTCACACCCAAGTGTTCTTGTCATGGGTTATACTTCATTTTTAGCCTTAATGAGACAAGATACAAAATTTGCACACAGAAAGTACATGGCCAAAACTTTGAGAGAAAGCCCTGGAATCTTGATACTCGATGAAGGTCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAATGCTTAATGGATCTTCCAACAGAATTGAGGATATTGCTTTCTGGCACTTTGTTTCAGAACAATTTCTGCGAATATTTCAACACATTGTGTTTAGCAAGACCAAAATTTGTTCACGAAGTGCTACGGGAGTTAGATTCTAAATACTTGAGGAGAGGTAACAGAGAGAAGAAAGCGCAGTATTTGCTTGAGGCGCGGGCGAGGAAATTCTTCTTGAACAACATTGCTACGAAAATCAACTCAGATAACGATGAGGAAAAAATGCAGGGTCTACATGTGCTGCGAAAGATCACGAGCAGTTTCATCGACGTTTATGAAAGTGGAAATTCCTATGATACACTTCCTGGTTTACAAATATATACACTGTTCATGAATACGTCCGATGAACAGCTTGAGATTATACAGAAACTGCAGAAGAAAATGGCTGAGTGTACCACCAGTTACCCTCTCGAGGTAGAGCTTTTGATAACCCTTGGATCGATACATCCATGGTTGATCAAAACAGCAACACCATGTGCAGATAAGTTTTTTGCCGAAGTTGAATTGAAGAGGCTAGACGGAATCAAATTTGATTTAAGAAAAGGTTCCAAAATAAGATTTGTTCTGAGCCTAATCTCACGTGTAGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACTACCTTGCACCTGTGAGATTTTTCATAGAGTTATTTGAGAAATACTTTCAATGGCAAAATGGAAAAGAGGTTCTGCTACTTACTGGTGATCTAGATTTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGTAGATCCTCGCAGCGGTTCGAAGATACTTCTAGCTTCAATCAATGCTTGTGCTGAAGGTATTAGCTTAACAGCAGCTTCTAGAGTGATTTTTTTGGATTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGTCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGTTATTGACGAGCGGGTCGATGGAGGAAGATAAGTATCGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGATTCTGTAACGAATATGCCGCGTCATACAGAAGGACAGCAAGGCCTTCTAGAAGGATCAGATTTGGTTATGCAGTCACAATCTGTTAGGCACTAG
Protein sequence

>MS.gene86697.t1

MTSIVLRSCQNSSFQNFESIFNTEKRPLVLAPKSTLYTWCKEFKKWKVPVPVYLIHGRQTQGDSTAPKPTVLPGVPRPSGDVKHVLDCLGKIQKWHSHPSVLVMGYTSFLALMRQDTKFAHRKYMAKTLRESPGILILDEGHNPRSTKSRLRKCLMDLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLRELDSKYLRRGNREKKAQYLLEARARKFFLNNIATKINSDNDEEKMQGLHVLRKITSSFIDVYESGNSYDTLPGLQIYTLFMNTSDEQLEIIQKLQKKMAECTTSYPLEVELLITLGSIHPWLIKTATPCADKFFAEVELKRLDGIKFDLRKGSKIRFVLSLISRVVKNEKVLIFCHYLAPVRFFIELFEKYFQWQNGKEVLLLTGDLDLFERGKVIDKFVDPRSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTSGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDEILREMVEEDKSKAIHMIMKNEKDSVTNMPRHTEGQQGLLEGSDLVMQSQSVRH