AlfalfaGEDB | MS.gene86706

M. sativa cultivar XinJiangDaYe / MS.gene86706

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86706.t1	RHN44861.1	81.6	304	42	3	1	291	156	458	2.00E-125	458.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86706.t1	Q9LYP5	62.8	43	16	0	1	43	256	298	3.3e-07	57.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86706.t1	G7L033	81.6	304	42	3	1	291	191	493	1.5e-125	458.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene86706.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86706.t1	MTR_7g026400	82.566	304	39	3	1	291	191	493	4.90e-164	469
MS.gene86706.t1	MTR_0450s0040	40.449	178	71	4	1	178	203	345	2.18e-24	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 54 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTAGCAAGTCACTTAC+AGG	0.277878	7.4:+74779596	MS.gene86706:CDS
AAATTTGGTTTGGTTCAAGG+AGG	0.591953	7.4:+74780514	MS.gene86706:CDS
AACTATGAACAATGGATTAA+GGG	0.373260	7.4:+74780423	MS.gene86706:CDS
AATAATGGAGCAGGAATGGT+TGG	0.529804	7.4:+74780394	MS.gene86706:CDS
AATTGGCCAACATGATGTGT+TGG	0.593925	7.4:-74780007	None:intergenic
AATTTGGTTTGGTTCAAGGA+GGG	0.563542	7.4:+74780515	MS.gene86706:CDS
ACACTGGCATATCAAACAAG+AGG	0.654807	7.4:+74779950	MS.gene86706:CDS
ACATCAGAAGTAAATTTATG+AGG	0.469959	7.4:-74780340	None:intergenic
ACTTCCATATTTGCAAACAC+TGG	0.582579	7.4:+74779934	MS.gene86706:CDS
AGATGTTGCAGAGAAAGGAA+TGG	0.689031	7.4:+74779802	MS.gene86706:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGCAAATAACAATGAAAC+GGG	+	chr7.4:74780451-74780470	MS.gene86706:CDS	30.0%
ATAACAGCTATGATCAATAC+AGG	+	chr7.4:74780119-74780138	MS.gene86706:CDS	30.0%
GCAAAAAACTCATTCAATGA+TGG	+	chr7.4:74780178-74780197	MS.gene86706:CDS	30.0%
TCTATATGATGAAAAGCTAG+TGG	-	chr7.4:74780209-74780228	None:intergenic	30.0%
AAATGTAGCAAGTCACTTAC+AGG	+	chr7.4:74779596-74779615	MS.gene86706:CDS	35.0%
ACTTCCATATTTGCAAACAC+TGG	+	chr7.4:74779934-74779953	MS.gene86706:CDS	35.0%
AGCTATGATCAATACAGGTT+TGG	+	chr7.4:74780124-74780143	MS.gene86706:CDS	35.0%
CAACATGATGTGTTGGAAAT+TGG	-	chr7.4:74780003-74780022	None:intergenic	35.0%
CAATTTCCAACACATCATGT+TGG	+	chr7.4:74780001-74780020	MS.gene86706:CDS	35.0%
GGAATTGGAACTATGAACAA+TGG	+	chr7.4:74780415-74780434	MS.gene86706:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	74779570	74780657	74779570	ID=MS.gene86706
chr7.4	mRNA	74779570	74780657	74779570	ID=MS.gene86706.t1;Parent=MS.gene86706
chr7.4	exon	74779570	74779617	74779570	ID=MS.gene86706.t1.exon1;Parent=MS.gene86706.t1
chr7.4	CDS	74779570	74779617	74779570	ID=cds.MS.gene86706.t1;Parent=MS.gene86706.t1
chr7.4	exon	74779782	74780657	74779782	ID=MS.gene86706.t1.exon2;Parent=MS.gene86706.t1
chr7.4	CDS	74779782	74780657	74779782	ID=cds.MS.gene86706.t1;Parent=MS.gene86706.t1

Gene Sequence

>MS.gene86706

ATGAATATACCTAACGTGACCAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTCTTCTCAATTTACTTCATATATTTCCATAATATTATAATATCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGTCTCTAATTTTTGTAAACTTTTTCTAGTATATCTTACAAACTATAATGCTTTAGTATATGATCACAATACTTGCAGAAATATCGCATATTTCTGCGAGATGTTGCAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTCTAAGATCAAGGTTTGCATCAAGTCTTCCGATGTCTATGATAAGAGAAATCGAAGAAAAAAGAACAAACAAACTTCATGCGCCAACACTTCCATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACGATGTTTTTAACCATTTCAACCAATTTCCAACACATCATGTTGGCCAATTTCCTTATATACAAAAAGGGCTGGCTCTTCAAGATTTGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCCGATGTTGTTGCAGAGAATAACAGCTATGATCAATACAGGTTTGGAATAAGCTCTTCATGCCTTCCAATTTTTCAAGCAAAAAACTCATTCAATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGCTGAACAAGGATTGATGGTTTCTTCTTCTTCTTCAAGTTTCTTAACAAGGGATTTTAAATTTGCTGATATTAGAAACCAAAATTATGGTGTTAAAAGCACTAATGTCATGCCTCATAAATTTACTTCTGATGTAAGAAATAACAATCCTTTCGGAATTCAGCTGAATAATGGAGCAGGAATGGTTGGAATTGGAACTATGAACAATGGATTAAGGGCTTCTAGTGCAAATAACAATGAAACGGGTCAAAATGAAAATATGAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGGTCTAGATTCTATTTCTAATATTAGGGGAGGGAGTGGAAGAGAGTTTCTAGCAGGATCAGTTAATATAATGAAGGAAATGTTACAAAGAATAGACAATTTCCTCGATATAAATTAG

Protein sequence

>MS.gene86706.t1

MNIPNVTRENVASHLQKYRIFLRDVAEKGMVGGISHRALRSRFASSLPMSMIREIEEKRTNKLHAPTLPYLQTLAYQTRGANDVFNHFNQFPTHHVGQFPYIQKGLALQDLEQVRLGKSKLEADVVAENNSYDQYRFGISSSCLPIFQAKNSFNDGASTSFSSYRAEQGLMVSSSSSSFLTRDFKFADIRNQNYGVKSTNVMPHKFTSDVRNNNPFGIQLNNGAGMVGIGTMNNGLRASSANNNETGQNENMNFRSFVNEKFGLVQGGFGLDSISNIRGGSGREFLAGSVNIMKEMLQRIDNFLDIN