AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86900.t1 MTR_1g036590 92.547 161 12 0 2 162 42 202 6.69e-90 292
MS.gene86900.t1 MTR_3g110417 85.714 126 18 0 397 522 1573 1698 1.76e-58 219
MS.gene86900.t1 MTR_3g110417 85.714 126 18 0 397 522 1535 1660 2.00e-58 219
MS.gene86900.t1 MTR_3g073000 82.353 119 20 1 692 809 124 242 4.92e-58 204
MS.gene86900.t1 MTR_3g073000 82.353 119 20 1 692 809 124 242 4.54e-57 204
MS.gene86900.t1 MTR_3g073000 90.278 72 6 1 806 876 377 448 4.05e-36 143
MS.gene86900.t1 MTR_3g073000 82.609 115 19 1 692 805 124 238 4.74e-56 200
MS.gene86900.t1 MTR_3g073000 90.278 72 6 1 806 876 342 413 2.47e-36 143
MS.gene86900.t1 MTR_2g461180 59.067 193 48 3 188 349 873 1065 5.95e-55 208
MS.gene86900.t1 MTR_7g007170 90.323 93 9 0 563 655 37 129 5.60e-48 170
MS.gene86900.t1 MTR_2g101350 79.545 88 18 0 39 126 27 114 1.78e-34 136
MS.gene86900.t1 MTR_2g101350 79.545 88 18 0 39 126 63 150 5.41e-34 135
MS.gene86900.t1 MTR_2g101350 79.545 88 18 0 39 126 27 114 1.31e-33 135
MS.gene86900.t1 MTR_2g101350 79.545 88 18 0 39 126 63 150 2.96e-33 135
MS.gene86900.t1 MTR_2g101350 79.545 88 18 0 39 126 63 150 4.88e-33 135
MS.gene86900.t1 MTR_8g466020 85.714 70 10 0 563 632 71 140 1.64e-30 122
MS.gene86900.t1 MTR_1g023760 78.571 70 15 0 563 632 110 179 1.08e-27 120
MS.gene86900.t1 MTR_8g076480 54.839 93 29 2 489 568 265 357 3.91e-20 95.1
MS.gene86900.t1 MTR_4g020710 75.926 54 13 0 512 565 23 76 4.48e-19 84.7
MS.gene86900.t1 MTR_2g075630 44.167 120 25 2 72 191 152 229 7.01e-17 82.0
MS.gene86900.t1 MTR_4g065040 76.744 43 10 0 523 565 311 353 1.93e-14 77.4
MS.gene86900.t1 MTR_2g097950 47.126 87 33 2 492 565 247 333 2.47e-13 73.9
MS.gene86900.t1 MTR_2g097950 47.126 87 33 2 492 565 282 368 3.35e-13 73.6
MS.gene86900.t1 MTR_2g066850 89.744 39 4 0 1 39 133 171 4.65e-12 70.9
MS.gene86900.t1 MTR_4g061370 67.568 74 16 2 332 399 457 528 4.68e-12 70.9
MS.gene86900.t1 MTR_4g116520 39.837 123 66 3 223 341 903 1021 4.58e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86900.t1 AT2G17900 56.897 116 49 1 692 806 133 248 1.32e-37 148
MS.gene86900.t1 AT2G17900 70.769 65 19 0 812 876 393 457 5.25e-25 110
MS.gene86900.t1 AT4G32820 54.762 126 55 1 397 522 1516 1639 4.15e-34 142
MS.gene86900.t1 AT4G32820 54.762 126 55 1 397 522 1525 1648 4.38e-34 142
MS.gene86900.t1 AT4G32820 55.556 126 54 1 397 522 1516 1639 4.44e-34 142
MS.gene86900.t1 AT1G19870 48.936 94 47 1 563 656 18 110 1.28e-17 88.2
MS.gene86900.t1 AT1G19870 48.936 94 47 1 563 656 201 293 1.50e-17 88.2
MS.gene86900.t1 AT4G36250 77.273 44 10 0 522 565 313 356 1.27e-14 78.2

Find 172 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCAAGCTGCATATTTC+TGG 0.146566 6.2:+54174405 None:intergenic
GAGAATGTTTGCTTTATTTA+TGG 0.171491 6.2:-54174445 MS.gene86900:CDS
ATTGCATTGTTGGAGATAAA+TGG 0.208228 6.2:-54174327 MS.gene86900:CDS
CAGCAACAGCTCGAAGTTCT+TGG 0.211936 6.2:+54174781 None:intergenic
ACCGATGGACATTAGGGTTT+TGG 0.218394 6.2:+54171885 None:intergenic
GGTTGCACACTCGCCTGTTT+TGG 0.231955 6.2:-54175057 MS.gene86900:CDS
ATCTCTTTAATATTGATTTC+AGG 0.234425 6.2:+54173232 None:intergenic
TATGCTGCTTCAATAGTTAA+TGG 0.245321 6.2:-54174204 MS.gene86900:CDS
AATGAAAGGGGAGAAATTTA+AGG 0.249586 6.2:-54173806 MS.gene86900:CDS
TATGCCGGAGATTGTGATTT+CGG 0.253606 6.2:-54175120 MS.gene86900:CDS
ATGCCGGAGATTGTGATTTC+GGG 0.274770 6.2:-54175119 MS.gene86900:CDS
ATATGCAGCTTGCATGAAAT+TGG 0.275686 6.2:-54174399 MS.gene86900:CDS
AACCATGGATCTGGAGGTTT+TGG 0.285618 6.2:+54174648 None:intergenic
CTTGTGGACCGATGGACATT+AGG 0.293082 6.2:+54171878 None:intergenic
TGCTGGTTGCAGTCAATTGC+AGG 0.312107 6.2:-54175477 MS.gene86900:CDS
AGATCGAAAATTTGAATTAT+CGG 0.318465 6.2:+54173411 None:intergenic
TTCGATTGAGGATTTGTTCC+AGG 0.320753 6.2:+54175029 None:intergenic
AATTGCACTTCATGTTAATC+AGG 0.336059 6.2:-54175318 MS.gene86900:CDS
ACTAATTCATCTACATAAAC+TGG 0.340530 6.2:+54175389 None:intergenic
TTGTGATTCGGAGCTGAAAA+TGG 0.341881 6.2:+54173862 None:intergenic
GAAATTTAAGGAAGATGATT+GGG 0.344363 6.2:-54173794 MS.gene86900:CDS
ATTTCTAAACCTGTTGGGTT+TGG 0.346757 6.2:-54174966 MS.gene86900:CDS
ATCATCCAGGCTTCAATTAG+AGG 0.366920 6.2:-54174018 MS.gene86900:CDS
ATGATTATCGCACCAGATTC+CGG 0.368081 6.2:+54174036 None:intergenic
CTTCAATTTCTAAACCTGTT+GGG 0.368986 6.2:-54174971 MS.gene86900:CDS
AATCAGTAAAGCTAGAATAT+TGG 0.371643 6.2:-54173015 MS.gene86900:CDS
GGATACACTCTTTGATAGAT+TGG 0.375546 6.2:+54172959 None:intergenic
CAAGCTGCTGTGATTGATAA+TGG 0.378940 6.2:+54173117 None:intergenic
GAGTTGAGACCTTTGGGAAC+AGG 0.386894 6.2:-54173157 MS.gene86900:CDS
GTTGGAGATAAATGGAAAAC+TGG 0.391848 6.2:-54174319 MS.gene86900:CDS
GGTGATCTCCTTCACGATAT+AGG 0.393326 6.2:+54174605 None:intergenic
CTAGAAATTACCGATGGCTT+TGG 0.394323 6.2:+54174708 None:intergenic
TTGTGGACCGATGGACATTA+GGG 0.394669 6.2:+54171879 None:intergenic
TTCGCGGTCACTTGGTTAGA+AGG 0.395082 6.2:-54173936 MS.gene86900:CDS
CCAGCTGTTCACCCTTTGCT+TGG 0.395564 6.2:-54172938 MS.gene86900:CDS
ACCGATGGCTTTGGCTTTGT+AGG 0.399512 6.2:+54174717 None:intergenic
GATGTCAATCCTCCGGAATC+TGG 0.399757 6.2:-54174048 MS.gene86900:CDS
CCCATTGTTGAATTGTGATT+CGG 0.401021 6.2:+54173850 None:intergenic
TATGCAGCTTGCATGAAATT+GGG 0.402684 6.2:-54174398 MS.gene86900:CDS
GCATGACCATATTGCATTGT+TGG 0.405312 6.2:-54174337 MS.gene86900:CDS
GTTCCAGGACTTCCCAAAAC+AGG 0.414066 6.2:+54175044 None:intergenic
TTATGGAGCAGAGAAGCTTA+TGG 0.416741 6.2:-54174428 MS.gene86900:CDS
TCGAAGTTCTTGGTCTTCCT+TGG 0.417503 6.2:+54174791 None:intergenic
TGACAGTGAGTTGAGACCTT+TGG 0.421001 6.2:-54173164 MS.gene86900:CDS
TCTTCAATTTCTAAACCTGT+TGG 0.423480 6.2:-54174972 MS.gene86900:CDS
GGAAAACTTGAATGGTATCT+TGG 0.424746 6.2:-54172896 MS.gene86900:CDS
TGACATCACAGAGGAGCATT+TGG 0.425504 6.2:-54173302 MS.gene86900:CDS
CACAATTCAACAATGGGATT+AGG 0.428502 6.2:-54173844 MS.gene86900:CDS
GGTGGATCTAACAATATTGT+AGG 0.428757 6.2:+54174147 None:intergenic
GACAGTGAGTTGAGACCTTT+GGG 0.429742 6.2:-54173163 MS.gene86900:CDS
CAATTAGAGGATATTTGATT+CGG 0.430573 6.2:-54174005 MS.gene86900:CDS
ATATTGTAGGCTCAATAAAC+AGG 0.436084 6.2:+54174160 None:intergenic
TTTGGTGTTATATGCACAAA+TGG 0.438018 6.2:-54173284 MS.gene86900:CDS
GATTTAAAGTCCGATGAGAT+TGG 0.438906 6.2:-54171937 MS.gene86900:CDS
AGAAATTTAAGGAAGATGAT+TGG 0.440291 6.2:-54173795 MS.gene86900:CDS
TATCCAACTCACTCTAGGTT+CGG 0.440411 6.2:+54175262 None:intergenic
TATGGCTAAAATTACAGAAT+CGG 0.449487 6.2:-54175501 MS.gene86900:CDS
GATGTTGAAAACAAAGTTCT+AGG 0.450761 6.2:-54175452 MS.gene86900:CDS
GTCAGATATGTGAGCTACTA+AGG 0.452229 6.2:+54173321 None:intergenic
GTAACTACTCGACACTGAAC+AGG 0.454864 6.2:+54175143 None:intergenic
CCAAGCAAAGGGTGAACAGC+TGG 0.455085 6.2:+54172938 None:intergenic
CCATGGTTCTCGACGACGAC+GGG 0.455528 6.2:-54174633 MS.gene86900:CDS
TTCTCCTCAATACTAACAAC+AGG 0.457927 6.2:+54175209 None:intergenic
ATCATGACAGAAGAAATCTT+TGG 0.458113 6.2:-54174111 MS.gene86900:CDS
TTGGTTAGAAGGCATGTTGT+TGG 0.458528 6.2:-54173925 MS.gene86900:CDS
GTTAATCAGGCACGTCTTGA+GGG 0.459816 6.2:-54175305 MS.gene86900:CDS
AGCTGTTGTTCGCGGTCACT+TGG 0.459866 6.2:-54173944 MS.gene86900:CDS
GTCAATATCGCGAGAATGAA+AGG 0.460190 6.2:-54173820 MS.gene86900:CDS
ACCGTTATCGTGTATAATCC+AGG 0.461084 6.2:+54174899 None:intergenic
TATTGCAAAATTGTGTGTTC+CGG 0.465076 6.2:-54174679 MS.gene86900:CDS
TAAATCATTGACCAAGGCTC+TGG 0.472219 6.2:-54172855 MS.gene86900:CDS
TAGTTGTCCCTAGCAGTGCT+TGG 0.478382 6.2:+54173358 None:intergenic
CGAACCTGTTGTTAGTATTG+AGG 0.481267 6.2:-54175213 MS.gene86900:CDS
GTCGTCGAGAACCATGGATC+TGG 0.481594 6.2:+54174639 None:intergenic
TGCACATGTCCAAACCCAAC+AGG 0.481847 6.2:+54174957 None:intergenic
CTGATTGTACTCCACTGGCC+TGG 0.483075 6.2:+54175079 None:intergenic
TTATCTCCAACAATGCAATA+TGG 0.485008 6.2:+54174331 None:intergenic
ATGCGCATTACATGCAAACT+TGG 0.485744 6.2:+54173195 None:intergenic
CATCTGAGAGTATCATGTAT+AGG 0.489877 6.2:-54174365 MS.gene86900:CDS
CCGAATCACAATTCAACAAT+GGG 0.491019 6.2:-54173850 MS.gene86900:CDS
GGAGATAGATTTCAAGAAGT+GGG 0.491250 6.2:-54175581 MS.gene86900:CDS
TGTTAATCAGGCACGTCTTG+AGG 0.492841 6.2:-54175306 MS.gene86900:CDS
CAGGCCAGTGGAGTACAATC+AGG 0.493111 6.2:-54175078 MS.gene86900:CDS
TAGAGTGAGTTGGATAAAAC+CGG 0.495923 6.2:-54175255 MS.gene86900:CDS
AACAGTCAAATTAAGGCTTG+TGG 0.496673 6.2:+54171862 None:intergenic
AATTCTTACGACGTTGAAAG+AGG 0.499264 6.2:-54175711 MS.gene86900:CDS
ATCTGGTGCGATAATCATCC+AGG 0.501379 6.2:-54174031 MS.gene86900:CDS
TTGTGAAGAAAGCTTGGTAA+TGG 0.503125 6.2:-54175627 MS.gene86900:CDS
CCAAGGCTCTGGATATACTA+AGG 0.503243 6.2:-54172844 MS.gene86900:CDS
TCTCAACTCACTGTCACAAA+TGG 0.504130 6.2:+54173171 None:intergenic
TGTAGATGAATTAGTAAAGG+TGG 0.505027 6.2:-54175381 MS.gene86900:CDS
GAAGGTAGCTGCCGAAGCTA+TGG 0.507018 6.2:-54175519 MS.gene86900:CDS
AAATTGCATCATTCTTCAGA+TGG 0.510745 6.2:+54174997 None:intergenic
TTTGAGGGTCAATTGAATGA+TGG 0.510847 6.2:-54174864 MS.gene86900:CDS
CTCAATACTAACAACAGGTT+CGG 0.511030 6.2:+54175214 None:intergenic
ATATCATTCCAAGCACTGCT+AGG 0.511042 6.2:-54173366 MS.gene86900:CDS
GGTGTTGAACAAAAGTTTGA+GGG 0.515338 6.2:-54174879 MS.gene86900:CDS
TACGGTGGATGTCAATCCTC+CGG 0.515600 6.2:-54174055 MS.gene86900:CDS
AATATCCTCTAATTGAAGCC+TGG 0.517071 6.2:+54174013 None:intergenic
GAAAGTTCAACTGCATCTGT+TGG 0.521307 6.2:-54174759 MS.gene86900:CDS
TGTTGGGTTTGGACATGTGC+AGG 0.522473 6.2:-54174955 MS.gene86900:CDS
AAATACTTTCTGATAGCCAC+TGG 0.522565 6.2:+54174546 None:intergenic
ATGCTTGTGGAAAACTTGAA+TGG 0.524944 6.2:-54172904 MS.gene86900:CDS
CGGTGTTGAACAAAAGTTTG+AGG 0.525583 6.2:-54174880 MS.gene86900:CDS
AAAATTACAGAATCGGCTGC+TGG 0.525920 6.2:-54175494 MS.gene86900:CDS
CAGCTTGCCCGATTCAATGT+TGG 0.526935 6.2:-54173101 MS.gene86900:CDS
CCTTAGTATATCCAGAGCCT+TGG 0.528936 6.2:+54172844 None:intergenic
GGCTTGCAATATTATGCTTG+TGG 0.530814 6.2:-54172917 MS.gene86900:CDS
GAACCCGAAATCACAATCTC+CGG 0.531441 6.2:+54175116 None:intergenic
AAGTTGCAAGCTGTTGTTCG+CGG 0.532219 6.2:-54173952 MS.gene86900:CDS
AATTTAAATGATGCAAAAGA+AGG 0.532407 6.2:-54175173 MS.gene86900:CDS
AACAGATGTCGAAAACGCTT+CGG 0.533722 6.2:+54175667 None:intergenic
TCGGTTATCACTGGAAGTAG+TGG 0.537711 6.2:+54174087 None:intergenic
TGGAGATAGATTTCAAGAAG+TGG 0.540369 6.2:-54175582 MS.gene86900:CDS
GCGACAATTGAATCAAAAGA+TGG 0.542926 6.2:-54175602 MS.gene86900:CDS
CTTTACAACATGTACACAAA+GGG 0.545306 6.2:-54173051 MS.gene86900:CDS
TCAATATCGCGAGAATGAAA+GGG 0.547217 6.2:-54173819 MS.gene86900:CDS
GTTCATATGCTAATAAATCC+AGG 0.549627 6.2:-54175097 MS.gene86900:CDS
TAGGGACAACTACAAGTTAG+TGG 0.549677 6.2:-54173347 MS.gene86900:CDS
TAATATTGCAAGCCAAGCAA+AGG 0.552972 6.2:+54172926 None:intergenic
CACTCTTTGATAGATTGGTA+TGG 0.556224 6.2:+54172964 None:intergenic
CACCAAAACCTCCAGATCCA+TGG 0.560015 6.2:-54174650 MS.gene86900:CDS
TTATGTAGATGAATTAGTAA+AGG 0.561602 6.2:-54175384 MS.gene86900:CDS
CTCTAATGAGCATCACATGA+AGG 0.565141 6.2:-54175537 MS.gene86900:CDS
AAGTTCTTGTGAAGAAAGCT+TGG 0.566019 6.2:-54175633 MS.gene86900:CDS
ATGATACTCTCAGATGTACC+AGG 0.566151 6.2:+54174372 None:intergenic
AAATTTAAGGAAGATGATTG+GGG 0.568109 6.2:-54173793 MS.gene86900:intron
GCAACCTGATTGTACTCCAC+TGG 0.571215 6.2:+54175074 None:intergenic
AATTGAAATGCCAATCTCAT+CGG 0.573433 6.2:+54171927 None:intergenic
CAACTACTATTTGAGAGTGT+AGG 0.573815 6.2:+54174249 None:intergenic
AATTAAGGCTTGTGGACCGA+TGG 0.574387 6.2:+54171870 None:intergenic
CCCGTCGTCGTCGAGAACCA+TGG 0.576306 6.2:+54174633 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.578091 6.2:+54174126 None:intergenic
ACCTACAAAGCCAAAGCCAT+CGG 0.580832 6.2:-54174718 MS.gene86900:CDS
CCCTGGATTATACACGATAA+CGG 0.582079 6.2:-54174900 MS.gene86900:CDS
TATCATTCCAAGCACTGCTA+GGG 0.582091 6.2:-54173365 MS.gene86900:CDS
ACATTGTCAGAACTACTCAC+TGG 0.582734 6.2:+54174474 None:intergenic
GATAACCGAAAATGAGAGTA+CGG 0.583762 6.2:-54174073 MS.gene86900:CDS
TCCGAATCACAATTCAACAA+TGG 0.584304 6.2:-54173851 MS.gene86900:CDS
TCGCCGAACCTAGAGTGAGT+TGG 0.586741 6.2:-54175265 MS.gene86900:CDS
AATATTGCAAGCCAAGCAAA+GGG 0.586895 6.2:+54172927 None:intergenic
CATTGAAGATCTTGTACCAG+TGG 0.593799 6.2:-54174562 MS.gene86900:CDS
TTGCATGAAATTGGGGACCC+TGG 0.595617 6.2:-54174390 MS.gene86900:CDS
GTGTCGAGTAGTTACTATGC+CGG 0.596592 6.2:-54175135 MS.gene86900:CDS
ATGCAGCTTGCATGAAATTG+GGG 0.605861 6.2:-54174397 MS.gene86900:CDS
GCTGCTTCAATAGTTAATGG+TGG 0.609962 6.2:-54174201 MS.gene86900:CDS
CCGTTATCGTGTATAATCCA+GGG 0.615444 6.2:+54174900 None:intergenic
CCCAAAACCCTAATGTCCAT+CGG 0.616082 6.2:-54171886 MS.gene86900:CDS
TGCTAATAAATCCAGGCCAG+TGG 0.619546 6.2:-54175090 MS.gene86900:CDS
GAGTAGTTCTGACAATGTGT+TGG 0.625077 6.2:-54174469 MS.gene86900:CDS
TGATATAATCCTGTTCCCAA+AGG 0.626743 6.2:+54173148 None:intergenic
GCTGGTTGCAGTCAATTGCA+GGG 0.628342 6.2:-54175476 MS.gene86900:CDS
TTAATCAGGCACGTCTTGAG+GGG 0.632115 6.2:-54175304 MS.gene86900:CDS
GTCGAGAACCATGGATCTGG+AGG 0.634219 6.2:+54174642 None:intergenic
GCTTTACAACATGTACACAA+AGG 0.634688 6.2:-54173052 MS.gene86900:CDS
GATATACTAAGGATTACTCA+TGG 0.637324 6.2:-54172833 MS.gene86900:intron
AAAAGAAGTTCGATATACCA+AGG 0.642415 6.2:-54174808 MS.gene86900:CDS
CAATATCGCGAGAATGAAAG+GGG 0.643003 6.2:-54173818 MS.gene86900:CDS
ATGATTTCAGCATCTAGTGG+TGG 0.649726 6.2:+54174129 None:intergenic
GTTGAAAACAAAGTTCTAGG+AGG 0.655970 6.2:-54175449 MS.gene86900:CDS
TCCATGGTTCTCGACGACGA+CGG 0.660617 6.2:-54174634 MS.gene86900:CDS
GGGGAAATCCTATATCGTGA+AGG 0.666362 6.2:-54174613 MS.gene86900:CDS
AGCTGTTAAATCATTGACCA+AGG 0.667636 6.2:-54172861 MS.gene86900:CDS
TGAATGGTATCTTGGAGACA+CGG 0.675211 6.2:-54172888 MS.gene86900:CDS
CATGGTTCTCGACGACGACG+GGG 0.682796 6.2:-54174632 MS.gene86900:CDS
TGATACTCTCAGATGTACCA+GGG 0.687333 6.2:+54174373 None:intergenic
ACATGTACACAAAGGGACTG+AGG 0.688671 6.2:-54173044 MS.gene86900:CDS
ATTATCGCACCAGATTCCGG+AGG 0.691340 6.2:+54174039 None:intergenic
TCACTGCTAGAAATTACCGA+TGG 0.693196 6.2:+54174702 None:intergenic
AACCGAAAATGAGAGTACGG+TGG 0.720303 6.2:-54174070 MS.gene86900:CDS
ATGGTATCTTGGAGACACGG+TGG 0.756768 6.2:-54172885 MS.gene86900:CDS
TCACATATCTGACATCACAG+AGG 0.795706 6.2:-54173311 MS.gene86900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCGTTTTATTTTATTT+TGG - chr6.2:54175267-54175286 MS.gene86900:CDS 10.0%
!! TACCTAAAAAAAAAACAATT+TGG + chr6.2:54175583-54175602 None:intergenic 15.0%
!!! TTTGTTTTTTTCAAAGATTT+GGG - chr6.2:54175612-54175631 MS.gene86900:CDS 15.0%
!! AATTTAAATGATGCAAAAGA+AGG - chr6.2:54172455-54172474 MS.gene86900:intron 20.0%
!! AGATCGAAAATTTGAATTAT+CGG + chr6.2:54174220-54174239 None:intergenic 20.0%
!! TCTAGAAAATTACTAAGATT+TGG + chr6.2:54175235-54175254 None:intergenic 20.0%
!! TTATGTAGATGAATTAGTAA+AGG - chr6.2:54172244-54172263 MS.gene86900:intron 20.0%
!!! ATCTCTTTAATATTGATTTC+AGG + chr6.2:54174399-54174418 None:intergenic 20.0%
!!! GTTTGTTTTTTTCAAAGATT+TGG - chr6.2:54175611-54175630 MS.gene86900:CDS 20.0%
!!! GTTTTTTTTTTAGGTAACAT+TGG - chr6.2:54175587-54175606 MS.gene86900:CDS 20.0%
!!! TGCCAAATTGTTTTTTTTTT+AGG - chr6.2:54175578-54175597 MS.gene86900:CDS 20.0%
!!! TTGTTTTTTTCAAAGATTTG+GGG - chr6.2:54175613-54175632 MS.gene86900:CDS 20.0%
!!! TTTTACATGTAATACTACAA+TGG - chr6.2:54174373-54174392 MS.gene86900:CDS 20.0%
! AAATTTAAGGAAGATGATTG+GGG - chr6.2:54173835-54173854 MS.gene86900:CDS 25.0%
! AATCAGTAAAGCTAGAATAT+TGG - chr6.2:54174613-54174632 MS.gene86900:CDS 25.0%
! ACTAATTCATCTACATAAAC+TGG + chr6.2:54172242-54172261 None:intergenic 25.0%
! AGAAATTTAAGGAAGATGAT+TGG - chr6.2:54173833-54173852 MS.gene86900:CDS 25.0%
! ATGCTAATGTCAAACTTATA+TGG - chr6.2:54173965-54173984 MS.gene86900:CDS 25.0%
! CAATTAGAGGATATTTGATT+CGG - chr6.2:54173623-54173642 MS.gene86900:intron 25.0%
! CTACAAACCTATCAAAATAA+GGG + chr6.2:54175411-54175430 None:intergenic 25.0%
! GAAATTTAAGGAAGATGATT+GGG - chr6.2:54173834-54173853 MS.gene86900:CDS 25.0%
! GAATTGTAAAGTAGAAGTTA+TGG + chr6.2:54175057-54175076 None:intergenic 25.0%
! TACTTTACAATTCCAACAAT+GGG - chr6.2:54175064-54175083 MS.gene86900:CDS 25.0%
! TAGATTGAATTCCAAATTTG+TGG + chr6.2:54174847-54174866 None:intergenic 25.0%
! TATGGCTAAAATTACAGAAT+CGG - chr6.2:54172127-54172146 MS.gene86900:intron 25.0%
! TGCTAATGTCAAACTTATAT+GGG - chr6.2:54173966-54173985 MS.gene86900:CDS 25.0%
! TTCAAAAACCAACATTGAAT+CGG + chr6.2:54174538-54174557 None:intergenic 25.0%
!! AAAACCTAGTAAACACATTT+TGG + chr6.2:54175659-54175678 None:intergenic 25.0%
!! AAACCTAGTAAACACATTTT+GGG + chr6.2:54175658-54175677 None:intergenic 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG - chr6.2:54175465-54175484 MS.gene86900:CDS 25.0%
!!! GAGAATGTTTGCTTTATTTA+TGG - chr6.2:54173183-54173202 MS.gene86900:CDS 25.0%
!!! TGTTTTTTTCAAAGATTTGG+GGG - chr6.2:54175614-54175633 MS.gene86900:CDS 25.0%
!!! TTTTATTTTATTTTGGCCCA+CGG - chr6.2:54175274-54175293 MS.gene86900:CDS 25.0%
AAAAGAAGTTCGATATACCA+AGG - chr6.2:54172820-54172839 MS.gene86900:intron 30.0%
AAACCCAAAATGTGTTTACT+AGG - chr6.2:54175652-54175671 MS.gene86900:CDS 30.0%
AAAGCAAACTTAGCATTCTA+AGG + chr6.2:54174107-54174126 None:intergenic 30.0%
AAATTGCATCATTCTTCAGA+TGG + chr6.2:54172634-54172653 None:intergenic 30.0%
AATGAAAGGGGAGAAATTTA+AGG - chr6.2:54173822-54173841 MS.gene86900:CDS 30.0%
AATTGAAATGCCAATCTCAT+CGG + chr6.2:54175704-54175723 None:intergenic 30.0%
AATTGCACTTCATGTTAATC+AGG - chr6.2:54172310-54172329 MS.gene86900:intron 30.0%
ACGAATTACGTCTTTAACAA+AGG + chr6.2:54173878-54173897 None:intergenic 30.0%
ATATTGTAGGCTCAATAAAC+AGG + chr6.2:54173471-54173490 None:intergenic 30.0%
ATCATGACAGAAGAAATCTT+TGG - chr6.2:54173517-54173536 MS.gene86900:intron 30.0%
ATTGCATTGTTGGAGATAAA+TGG - chr6.2:54173301-54173320 MS.gene86900:CDS 30.0%
CTACTTTACAATTCCAACAA+TGG - chr6.2:54175063-54175082 MS.gene86900:CDS 30.0%
CTTCAATTTCTAAACCTGTT+GGG - chr6.2:54172657-54172676 MS.gene86900:intron 30.0%
CTTTACAACATGTACACAAA+GGG - chr6.2:54174577-54174596 MS.gene86900:CDS 30.0%
GATATACTAAGGATTACTCA+TGG - chr6.2:54174795-54174814 MS.gene86900:CDS 30.0%
GATGTTGAAAACAAAGTTCT+AGG - chr6.2:54172176-54172195 MS.gene86900:intron 30.0%
GCATAATGAAAAATCAGTAG+TGG + chr6.2:54173047-54173066 None:intergenic 30.0%
GCTAATGTCAAACTTATATG+GGG - chr6.2:54173967-54173986 MS.gene86900:CDS 30.0%
GCTACAAACCTATCAAAATA+AGG + chr6.2:54175412-54175431 None:intergenic 30.0%
GTTCATATGCTAATAAATCC+AGG - chr6.2:54172531-54172550 MS.gene86900:intron 30.0%
TAAGGAATTAGAATCACAGT+TGG - chr6.2:54175028-54175047 MS.gene86900:CDS 30.0%
TATTGCAAAATTGTGTGTTC+CGG - chr6.2:54172949-54172968 MS.gene86900:CDS 30.0%
TCAAAAACCAACATTGAATC+GGG + chr6.2:54174537-54174556 None:intergenic 30.0%
TCTTCAATTTCTAAACCTGT+TGG - chr6.2:54172656-54172675 MS.gene86900:intron 30.0%
TGATCTATTTCAGAGTTAGA+AGG + chr6.2:54174081-54174100 None:intergenic 30.0%
TGTAGATGAATTAGTAAAGG+TGG - chr6.2:54172247-54172266 MS.gene86900:intron 30.0%
TTATCTCCAACAATGCAATA+TGG + chr6.2:54173300-54173319 None:intergenic 30.0%
TTGATCCTACACAAGTTTAA+AGG + chr6.2:54175529-54175548 None:intergenic 30.0%
TTTAACAAAGGAAGATTGCT+CGG + chr6.2:54173866-54173885 None:intergenic 30.0%
TTTATCAAAATGAGAACTCG+AGG - chr6.2:54175136-54175155 MS.gene86900:CDS 30.0%
! AATCAAAAAGTGTGTCTCTA+TGG + chr6.2:54175340-54175359 None:intergenic 30.0%
! CACAGAAATTGAATGCTTTT+TGG + chr6.2:54172219-54172238 None:intergenic 30.0%
! TATGCTGCTTCAATAGTTAA+TGG - chr6.2:54173424-54173443 MS.gene86900:CDS 30.0%
!! AGAAATTGAATGCTTTTTGG+TGG + chr6.2:54172216-54172235 None:intergenic 30.0%
!! TGTAATTTTAGCCATAGCTT+CGG + chr6.2:54172123-54172142 None:intergenic 30.0%
!! TTTGGTGTTATATGCACAAA+TGG - chr6.2:54174344-54174363 MS.gene86900:CDS 30.0%
!!! AAACTCACTTTTTAGCAATC+AGG - chr6.2:54172703-54172722 MS.gene86900:intron 30.0%
!!! GATTCAATGTTGGTTTTTGA+AGG - chr6.2:54174537-54174556 MS.gene86900:CDS 30.0%
!!! TTTATTTTATTTTGGCCCAC+GGG - chr6.2:54175275-54175294 MS.gene86900:CDS 30.0%
AAATACTTTCTGATAGCCAC+TGG + chr6.2:54173085-54173104 None:intergenic 35.0%
AAGCATTAAGCATGCTAGTT+GGG + chr6.2:54174872-54174891 None:intergenic 35.0%
AAGTTCTTGTGAAGAAAGCT+TGG - chr6.2:54171995-54172014 MS.gene86900:intron 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr6.2:54173618-54173637 None:intergenic 35.0%
AATATTGCAAGCCAAGCAAA+GGG + chr6.2:54174704-54174723 None:intergenic 35.0%
AATTCTTACGACGTTGAAAG+AGG - chr6.2:54171917-54171936 MS.gene86900:CDS 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr6.2:54175442-54175461 None:intergenic 35.0%
AGCTGTTAAATCATTGACCA+AGG - chr6.2:54174767-54174786 MS.gene86900:CDS 35.0%
ATATGCAGCTTGCATGAAAT+TGG - chr6.2:54173229-54173248 MS.gene86900:CDS 35.0%
ATGCTTGTGGAAAACTTGAA+TGG - chr6.2:54174724-54174743 MS.gene86900:CDS 35.0%
ATGTTTGTGAAGAGCAAGAA+AGG - chr6.2:54174958-54174977 MS.gene86900:CDS 35.0%
ATTTCTAAACCTGTTGGGTT+TGG - chr6.2:54172662-54172681 MS.gene86900:intron 35.0%
CACAATTCAACAATGGGATT+AGG - chr6.2:54173784-54173803 MS.gene86900:intron 35.0%
CACTCTTTGATAGATTGGTA+TGG + chr6.2:54174667-54174686 None:intergenic 35.0%
CCCATTGTTGAATTGTGATT+CGG + chr6.2:54173781-54173800 None:intergenic 35.0%
CCGAATCACAATTCAACAAT+GGG - chr6.2:54173778-54173797 MS.gene86900:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG + chr6.2:54175404-54175423 None:intergenic 35.0%
CTCAATACTAACAACAGGTT+CGG + chr6.2:54172417-54172436 None:intergenic 35.0%
GAAAGAAATAACAAACCCGT+GGG + chr6.2:54175293-54175312 None:intergenic 35.0%
GATAACCGAAAATGAGAGTA+CGG - chr6.2:54173555-54173574 MS.gene86900:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr6.2:54175441-54175460 None:intergenic 35.0%
GCGACAATTGAATCAAAAGA+TGG - chr6.2:54172026-54172045 MS.gene86900:intron 35.0%
GCTTTACAACATGTACACAA+AGG - chr6.2:54174576-54174595 MS.gene86900:CDS 35.0%
GGAAAACTTGAATGGTATCT+TGG - chr6.2:54174732-54174751 MS.gene86900:CDS 35.0%
GGAGATAGATTTCAAGAAGT+GGG - chr6.2:54172047-54172066 MS.gene86900:intron 35.0%
GGATACACTCTTTGATAGAT+TGG + chr6.2:54174672-54174691 None:intergenic 35.0%
GGTGGATCTAACAATATTGT+AGG + chr6.2:54173484-54173503 None:intergenic 35.0%
GTTGGAGATAAATGGAAAAC+TGG - chr6.2:54173309-54173328 MS.gene86900:CDS 35.0%
TAATATTGCAAGCCAAGCAA+AGG + chr6.2:54174705-54174724 None:intergenic 35.0%
TACAAAGACTCCATTTGTGA+AGG - chr6.2:54174818-54174837 MS.gene86900:CDS 35.0%
TATGCAGCTTGCATGAAATT+GGG - chr6.2:54173230-54173249 MS.gene86900:CDS 35.0%
TCAATATCGCGAGAATGAAA+GGG - chr6.2:54173809-54173828 MS.gene86900:CDS 35.0%
TCCGAATCACAATTCAACAA+TGG - chr6.2:54173777-54173796 MS.gene86900:intron 35.0%
TCTTGCTCTTCACAAACATT+AGG + chr6.2:54174957-54174976 None:intergenic 35.0%
TGAAAGAAATAACAAACCCG+TGG + chr6.2:54175294-54175313 None:intergenic 35.0%
TGAGTTGTACTAATCCCATT+GGG + chr6.2:54174170-54174189 None:intergenic 35.0%
TGATATAATCCTGTTCCCAA+AGG + chr6.2:54174483-54174502 None:intergenic 35.0%
TGGAGATAGATTTCAAGAAG+TGG - chr6.2:54172046-54172065 MS.gene86900:intron 35.0%
TTAGAAGGTTCAAAACAAGC+AGG + chr6.2:54174066-54174085 None:intergenic 35.0%
TTCTCCTCAATACTAACAAC+AGG + chr6.2:54172422-54172441 None:intergenic 35.0%
TTGTGAAGAAAGCTTGGTAA+TGG - chr6.2:54172001-54172020 MS.gene86900:intron 35.0%
TTTGAGGGTCAATTGAATGA+TGG - chr6.2:54172764-54172783 MS.gene86900:intron 35.0%
! AGATTTTCTCTCAATTCTGG+TGG - chr6.2:54175375-54175394 MS.gene86900:CDS 35.0%
! CAACTACTATTTGAGAGTGT+AGG + chr6.2:54173382-54173401 None:intergenic 35.0%
! GATTTAAAGTCCGATGAGAT+TGG - chr6.2:54175691-54175710 MS.gene86900:CDS 35.0%
! GGTGTTGAACAAAAGTTTGA+GGG - chr6.2:54172749-54172768 MS.gene86900:intron 35.0%
! TAGAGTGAGTTGGATAAAAC+CGG - chr6.2:54172373-54172392 MS.gene86900:intron 35.0%
! TCGAGATTTTCTCTCAATTC+TGG - chr6.2:54175372-54175391 MS.gene86900:CDS 35.0%
! TGGTTTTCATTCTTCGATTG+AGG + chr6.2:54172614-54172633 None:intergenic 35.0%
! TTGAGTTGTACTAATCCCAT+TGG + chr6.2:54174171-54174190 None:intergenic 35.0%
!! CATCTGAGAGTATCATGTAT+AGG - chr6.2:54173263-54173282 MS.gene86900:CDS 35.0%
!! GTGACTGAATGTTTTTCAAC+CGG + chr6.2:54172395-54172414 None:intergenic 35.0%
!! GTTGAAAACAAAGTTCTAGG+AGG - chr6.2:54172179-54172198 MS.gene86900:intron 35.0%
!! TTTTTCAAAGATTTGGGGGT+TGG - chr6.2:54175618-54175637 MS.gene86900:CDS 35.0%
!!! ACATTAGGGTTTTGGGTTTA+AGG + chr6.2:54175738-54175757 None:intergenic 35.0%
AAAATTACAGAATCGGCTGC+TGG - chr6.2:54172134-54172153 MS.gene86900:intron 40.0%
AAACTTATATGGGGACCAAC+AGG - chr6.2:54173976-54173995 MS.gene86900:CDS 40.0%
AACAGATGTCGAAAACGCTT+CGG + chr6.2:54171964-54171983 None:intergenic 40.0%
ACATTGTCAGAACTACTCAC+TGG + chr6.2:54173157-54173176 None:intergenic 40.0%
ACCGTTATCGTGTATAATCC+AGG + chr6.2:54172732-54172751 None:intergenic 40.0%
AGCATTAAGCATGCTAGTTG+GGG + chr6.2:54174871-54174890 None:intergenic 40.0%
AGTTTAAAGGTGACGCAGTA+CGG + chr6.2:54175516-54175535 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr6.2:54173610-54173629 MS.gene86900:intron 40.0%
ATGATACTCTCAGATGTACC+AGG + chr6.2:54173259-54173278 None:intergenic 40.0%
ATGATTATCGCACCAGATTC+CGG + chr6.2:54173595-54173614 None:intergenic 40.0%
ATGATTTCAGCATCTAGTGG+TGG + chr6.2:54173502-54173521 None:intergenic 40.0%
ATGCAGCTTGCATGAAATTG+GGG - chr6.2:54173231-54173250 MS.gene86900:CDS 40.0%
ATGCGCATTACATGCAAACT+TGG + chr6.2:54174436-54174455 None:intergenic 40.0%
ATTGAAGGAGTCAACAAGCA+TGG - chr6.2:54175107-54175126 MS.gene86900:CDS 40.0%
CAAGCTGCTGTGATTGATAA+TGG + chr6.2:54174514-54174533 None:intergenic 40.0%
CAATATCGCGAGAATGAAAG+GGG - chr6.2:54173810-54173829 MS.gene86900:CDS 40.0%
CATTGAAGATCTTGTACCAG+TGG - chr6.2:54173066-54173085 MS.gene86900:CDS 40.0%
CCCTGGATTATACACGATAA+CGG - chr6.2:54172728-54172747 MS.gene86900:intron 40.0%
CCGTTATCGTGTATAATCCA+GGG + chr6.2:54172731-54172750 None:intergenic 40.0%
CGAACCTGTTGTTAGTATTG+AGG - chr6.2:54172415-54172434 MS.gene86900:intron 40.0%
CGTCACCTTTAAACTTGTGT+AGG - chr6.2:54175521-54175540 MS.gene86900:CDS 40.0%
CTAGAAATTACCGATGGCTT+TGG + chr6.2:54172923-54172942 None:intergenic 40.0%
CTCTAATGAGCATCACATGA+AGG - chr6.2:54172091-54172110 MS.gene86900:intron 40.0%
GAAAGTTCAACTGCATCTGT+TGG - chr6.2:54172869-54172888 MS.gene86900:CDS 40.0%
GAAGACAAAGACAGTTGCAT+GGG - chr6.2:54174005-54174024 MS.gene86900:CDS 40.0%
GCATGACCATATTGCATTGT+TGG - chr6.2:54173291-54173310 MS.gene86900:CDS 40.0%
GCTGCTTCAATAGTTAATGG+TGG - chr6.2:54173427-54173446 MS.gene86900:CDS 40.0%
GGCTTGCAATATTATGCTTG+TGG - chr6.2:54174711-54174730 MS.gene86900:CDS 40.0%
GTCAATATCGCGAGAATGAA+AGG - chr6.2:54173808-54173827 MS.gene86900:CDS 40.0%
GTCAGATATGTGAGCTACTA+AGG + chr6.2:54174310-54174329 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG + chr6.2:54173505-54173524 None:intergenic 40.0%
TAAATCATTGACCAAGGCTC+TGG - chr6.2:54174773-54174792 MS.gene86900:CDS 40.0%
TAGGGACAACTACAAGTTAG+TGG - chr6.2:54174281-54174300 MS.gene86900:CDS 40.0%
TATCCAACTCACTCTAGGTT+CGG + chr6.2:54172369-54172388 None:intergenic 40.0%
TATGCCGGAGATTGTGATTT+CGG - chr6.2:54172508-54172527 MS.gene86900:intron 40.0%
TCACATATCTGACATCACAG+AGG - chr6.2:54174317-54174336 MS.gene86900:CDS 40.0%
TCACTGCTAGAAATTACCGA+TGG + chr6.2:54172929-54172948 None:intergenic 40.0%
TCATGCAAGCTGCATATTTC+TGG + chr6.2:54173226-54173245 None:intergenic 40.0%
TCTCAACTCACTGTCACAAA+TGG + chr6.2:54174460-54174479 None:intergenic 40.0%
TGAATGGTATCTTGGAGACA+CGG - chr6.2:54174740-54174759 MS.gene86900:CDS 40.0%
TGATACTCTCAGATGTACCA+GGG + chr6.2:54173258-54173277 None:intergenic 40.0%
TTATGGAGCAGAGAAGCTTA+TGG - chr6.2:54173200-54173219 MS.gene86900:CDS 40.0%
TTCAGGAAGCAGATTTGAAC+TGG + chr6.2:54174130-54174149 None:intergenic 40.0%
TTGAAGGAGTCAACAAGCAT+GGG - chr6.2:54175108-54175127 MS.gene86900:CDS 40.0%
! ATATCATTCCAAGCACTGCT+AGG - chr6.2:54174262-54174281 MS.gene86900:CDS 40.0%
! ATCCACCGTACTCTCATTTT+CGG + chr6.2:54173563-54173582 None:intergenic 40.0%
! CGGTGTTGAACAAAAGTTTG+AGG - chr6.2:54172748-54172767 MS.gene86900:intron 40.0%
! CTCTCATTTTCGGTTATCAC+TGG + chr6.2:54173553-54173572 None:intergenic 40.0%
! GAAGCATTAAGCATGCTAGT+TGG + chr6.2:54174873-54174892 None:intergenic 40.0%
! TATCATTCCAAGCACTGCTA+GGG - chr6.2:54174263-54174282 MS.gene86900:CDS 40.0%
! TTCGATTGAGGATTTGTTCC+AGG + chr6.2:54172602-54172621 None:intergenic 40.0%
! TTGGTTAGAAGGCATGTTGT+TGG - chr6.2:54173703-54173722 MS.gene86900:intron 40.0%
! TTGTGATTCGGAGCTGAAAA+TGG + chr6.2:54173769-54173788 None:intergenic 40.0%
!! GAGTAGTTCTGACAATGTGT+TGG - chr6.2:54173159-54173178 MS.gene86900:CDS 40.0%
!! GGTTTTATCCAACTCACTCT+AGG + chr6.2:54172374-54172393 None:intergenic 40.0%
!! TTTTTAGCAATCAGGATCCC+TGG - chr6.2:54172711-54172730 MS.gene86900:intron 40.0%
!!! CATCTGTTGGTTTTCAGTCA+CGG - chr6.2:54172882-54172901 MS.gene86900:CDS 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG - chr6.2:54175401-54175420 MS.gene86900:CDS 40.0%
AAGTTGCAAGCTGTTGTTCG+CGG - chr6.2:54173676-54173695 MS.gene86900:intron 45.0%
AATTAAGGCTTGTGGACCGA+TGG + chr6.2:54175761-54175780 None:intergenic 45.0%
ACAATTCCAACAATGGGACC+CGG - chr6.2:54175070-54175089 MS.gene86900:CDS 45.0%
ACATGTACACAAAGGGACTG+AGG - chr6.2:54174584-54174603 MS.gene86900:CDS 45.0%
ACCTACAAAGCCAAAGCCAT+CGG - chr6.2:54172910-54172929 MS.gene86900:CDS 45.0%
ATCTGGTGCGATAATCATCC+AGG - chr6.2:54173597-54173616 MS.gene86900:intron 45.0%
ATGCCGGAGATTGTGATTTC+GGG - chr6.2:54172509-54172528 MS.gene86900:intron 45.0%
CAAGATCATGTCTGCTCACT+GGG - chr6.2:54174995-54175014 MS.gene86900:CDS 45.0%
CCCAAAACCCTAATGTCCAT+CGG - chr6.2:54175742-54175761 MS.gene86900:CDS 45.0%
CCTTAGTATATCCAGAGCCT+TGG + chr6.2:54174787-54174806 None:intergenic 45.0%
CTCGAGGTCGAGTTCTTTAT+AGG - chr6.2:54175152-54175171 MS.gene86900:CDS 45.0%
GAACCCGAAATCACAATCTC+CGG + chr6.2:54172515-54172534 None:intergenic 45.0%
GAGGTCGAGTTCTTTATAGG+TGG - chr6.2:54175155-54175174 MS.gene86900:CDS 45.0%
GATGACAGAAGTCACCCAAT+GGG - chr6.2:54174153-54174172 MS.gene86900:CDS 45.0%
GGAAGACAAAGACAGTTGCA+TGG - chr6.2:54174004-54174023 MS.gene86900:CDS 45.0%
GGGGAAATCCTATATCGTGA+AGG - chr6.2:54173015-54173034 MS.gene86900:CDS 45.0%
GGTGATCTCCTTCACGATAT+AGG + chr6.2:54173026-54173045 None:intergenic 45.0%
GGTGGTCTCTTGTTCATTGA+AGG - chr6.2:54175092-54175111 MS.gene86900:CDS 45.0%
GTAACTACTCGACACTGAAC+AGG + chr6.2:54172488-54172507 None:intergenic 45.0%
GTCGAGTTCTTTATAGGTGG+AGG - chr6.2:54175158-54175177 MS.gene86900:CDS 45.0%
GTGTCGAGTAGTTACTATGC+CGG - chr6.2:54172493-54172512 MS.gene86900:intron 45.0%
GTTAATCAGGCACGTCTTGA+GGG - chr6.2:54172323-54172342 MS.gene86900:intron 45.0%
TCAATGAACAAGAGACCACC+CGG + chr6.2:54175092-54175111 None:intergenic 45.0%
TCGGTTATCACTGGAAGTAG+TGG + chr6.2:54173544-54173563 None:intergenic 45.0%
TGACTTCTGTCATCGAGTTC+AGG + chr6.2:54174147-54174166 None:intergenic 45.0%
TGCAACTGTCTTTGTCTTCC+CGG + chr6.2:54174004-54174023 None:intergenic 45.0%
TGCTAATAAATCCAGGCCAG+TGG - chr6.2:54172538-54172557 MS.gene86900:intron 45.0%
TGTGAAGGCTGCCACAAATT+TGG - chr6.2:54174833-54174852 MS.gene86900:CDS 45.0%
TGTTAATCAGGCACGTCTTG+AGG - chr6.2:54172322-54172341 MS.gene86900:intron 45.0%
TTAATCAGGCACGTCTTGAG+GGG - chr6.2:54172324-54172343 MS.gene86900:intron 45.0%
TTGTGGACCGATGGACATTA+GGG + chr6.2:54175752-54175771 None:intergenic 45.0%
TTTGTGGCAGCCTTCACAAA+TGG + chr6.2:54174831-54174850 None:intergenic 45.0%
! AACCATGGATCTGGAGGTTT+TGG + chr6.2:54172983-54173002 None:intergenic 45.0%
! AACCGAAAATGAGAGTACGG+TGG - chr6.2:54173558-54173577 MS.gene86900:intron 45.0%
! ACCGATGGACATTAGGGTTT+TGG + chr6.2:54175746-54175765 None:intergenic 45.0%
! CCGATGGACATTAGGGTTTT+GGG + chr6.2:54175745-54175764 None:intergenic 45.0%
! GACAGTGAGTTGAGACCTTT+GGG - chr6.2:54174465-54174484 MS.gene86900:CDS 45.0%
! TCGAAGTTCTTGGTCTTCCT+TGG + chr6.2:54172840-54172859 None:intergenic 45.0%
! TGACAGTGAGTTGAGACCTT+TGG - chr6.2:54174464-54174483 MS.gene86900:CDS 45.0%
!! CCAAGGCTCTGGATATACTA+AGG - chr6.2:54174784-54174803 MS.gene86900:CDS 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG - chr6.2:54175382-54175401 MS.gene86900:CDS 45.0%
!! TGACATCACAGAGGAGCATT+TGG - chr6.2:54174326-54174345 MS.gene86900:CDS 45.0%
ATATGGGGACCAACAGGAAC+CGG - chr6.2:54173982-54174001 MS.gene86900:CDS 50.0%
ATGCTTCCTGCGCACATCAT+AGG - chr6.2:54174886-54174905 MS.gene86900:CDS 50.0%
ATGGTATCTTGGAGACACGG+TGG - chr6.2:54174743-54174762 MS.gene86900:CDS 50.0%
ATTATCGCACCAGATTCCGG+AGG + chr6.2:54173592-54173611 None:intergenic 50.0%
CAATGAACAAGAGACCACCC+GGG + chr6.2:54175091-54175110 None:intergenic 50.0%
CAATTCCAACAATGGGACCC+GGG - chr6.2:54175071-54175090 MS.gene86900:CDS 50.0%
CACCAAAACCTCCAGATCCA+TGG - chr6.2:54172978-54172997 MS.gene86900:CDS 50.0%
CAGCAACAGCTCGAAGTTCT+TGG + chr6.2:54172850-54172869 None:intergenic 50.0%
CAGCTTGCCCGATTCAATGT+TGG - chr6.2:54174527-54174546 MS.gene86900:CDS 50.0%
CGATGACAGAAGTCACCCAA+TGG - chr6.2:54174152-54174171 MS.gene86900:CDS 50.0%
CTTGTGGACCGATGGACATT+AGG + chr6.2:54175753-54175772 None:intergenic 50.0%
GATGTCAATCCTCCGGAATC+TGG - chr6.2:54173580-54173599 MS.gene86900:intron 50.0%
GCAACCTGATTGTACTCCAC+TGG + chr6.2:54172557-54172576 None:intergenic 50.0%
GCAAGATCATGTCTGCTCAC+TGG - chr6.2:54174994-54175013 MS.gene86900:CDS 50.0%
GCTGGTTGCAGTCAATTGCA+GGG - chr6.2:54172152-54172171 MS.gene86900:intron 50.0%
GTTCCAGGACTTCCCAAAAC+AGG + chr6.2:54172587-54172606 None:intergenic 50.0%
TACGGTGGATGTCAATCCTC+CGG - chr6.2:54173573-54173592 MS.gene86900:intron 50.0%
TAGTTGTCCCTAGCAGTGCT+TGG + chr6.2:54174273-54174292 None:intergenic 50.0%
TCACTGGGAGCTCAAGACTA+AGG - chr6.2:54175010-54175029 MS.gene86900:CDS 50.0%
TGCACATGTCCAAACCCAAC+AGG + chr6.2:54172674-54172693 None:intergenic 50.0%
TGCTTCCTGCGCACATCATA+GGG - chr6.2:54174887-54174906 MS.gene86900:CDS 50.0%
TGTTGGGTTTGGACATGTGC+AGG - chr6.2:54172673-54172692 MS.gene86900:intron 50.0%
TTCGCGGTCACTTGGTTAGA+AGG - chr6.2:54173692-54173711 MS.gene86900:intron 50.0%
TTGCATGAAATTGGGGACCC+TGG - chr6.2:54173238-54173257 MS.gene86900:CDS 50.0%
TTTGTCTTCCCGGTTCCTGT+TGG + chr6.2:54173994-54174013 None:intergenic 50.0%
! GAGTTGAGACCTTTGGGAAC+AGG - chr6.2:54174471-54174490 MS.gene86900:CDS 50.0%
! GTTGCACACTCGCCTGTTTT+GGG - chr6.2:54172572-54172591 MS.gene86900:intron 50.0%
! TGCTGGTTGCAGTCAATTGC+AGG - chr6.2:54172151-54172170 MS.gene86900:intron 50.0%
!! ACCGATGGCTTTGGCTTTGT+AGG + chr6.2:54172914-54172933 None:intergenic 50.0%
AGCTGTTGTTCGCGGTCACT+TGG - chr6.2:54173684-54173703 MS.gene86900:intron 55.0%
CAGGCCAGTGGAGTACAATC+AGG - chr6.2:54172550-54172569 MS.gene86900:intron 55.0%
CCAAGCAAAGGGTGAACAGC+TGG + chr6.2:54174693-54174712 None:intergenic 55.0%
CCAGCTGTTCACCCTTTGCT+TGG - chr6.2:54174690-54174709 MS.gene86900:CDS 55.0%
CTGATTGTACTCCACTGGCC+TGG + chr6.2:54172552-54172571 None:intergenic 55.0%
GAAGGTAGCTGCCGAAGCTA+TGG - chr6.2:54172109-54172128 MS.gene86900:intron 55.0%
GTCGAGAACCATGGATCTGG+AGG + chr6.2:54172989-54173008 None:intergenic 55.0%
GTCGTCGAGAACCATGGATC+TGG + chr6.2:54172992-54173011 None:intergenic 55.0%
TAGGTGGAGGAGACTGATGC+AGG - chr6.2:54175171-54175190 MS.gene86900:CDS 55.0%
TATGGGGACCAACAGGAACC+GGG - chr6.2:54173983-54174002 MS.gene86900:CDS 55.0%
TCCATGGTTCTCGACGACGA+CGG - chr6.2:54172994-54173013 MS.gene86900:CDS 55.0%
TCGCCGAACCTAGAGTGAGT+TGG - chr6.2:54172363-54172382 MS.gene86900:intron 55.0%
TGATGCCCTATGATGTGCGC+AGG + chr6.2:54174895-54174914 None:intergenic 55.0%
TGGAGGAGACTGATGCAGGA+GGG - chr6.2:54175175-54175194 MS.gene86900:CDS 55.0%
! GGTTGCACACTCGCCTGTTT+TGG - chr6.2:54172571-54172590 MS.gene86900:intron 55.0%
! TGACGCAGTACGGAAGCGTA+TGG + chr6.2:54175506-54175525 None:intergenic 55.0%
!! GGATCTGGAGGTTTTGGTGC+TGG + chr6.2:54172977-54172996 None:intergenic 55.0%
!!! TCGCCTGTTTTGGGAAGTCC+TGG - chr6.2:54172581-54172600 MS.gene86900:intron 55.0%
CATGGTTCTCGACGACGACG+GGG - chr6.2:54172996-54173015 MS.gene86900:CDS 60.0%
CCATGGTTCTCGACGACGAC+GGG - chr6.2:54172995-54173014 MS.gene86900:CDS 60.0%
GTGGAGGAGACTGATGCAGG+AGG - chr6.2:54175174-54175193 MS.gene86900:CDS 60.0%
TTCCAACAATGGGACCCGGG+TGG - chr6.2:54175074-54175093 MS.gene86900:CDS 60.0%
CCCGTCGTCGTCGAGAACCA+TGG + chr6.2:54172998-54173017 None:intergenic 65.0%
GACCACCCGGGTCCCATTGT+TGG + chr6.2:54175079-54175098 None:intergenic 65.0%
!!! GGAGGTTTTGGTGCTGGCGC+CGG + chr6.2:54172971-54172990 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 54171867 54175783 54171867 ID=MS.gene86900
chr6.2 mRNA 54171867 54175783 54171867 ID=MS.gene86900.t1;Parent=MS.gene86900
chr6.2 exon 54173794 54175783 54173794 ID=MS.gene86900.t1.exon1;Parent=MS.gene86900.t1
chr6.2 CDS 54173794 54175783 54173794 ID=cds.MS.gene86900.t1;Parent=MS.gene86900.t1
chr6.2 exon 54172834 54173469 54172834 ID=MS.gene86900.t1.exon2;Parent=MS.gene86900.t1
chr6.2 CDS 54172834 54173469 54172834 ID=cds.MS.gene86900.t1;Parent=MS.gene86900.t1
chr6.2 exon 54171867 54171976 54171867 ID=MS.gene86900.t1.exon3;Parent=MS.gene86900.t1
chr6.2 CDS 54171867 54171976 54171867 ID=cds.MS.gene86900.t1;Parent=MS.gene86900.t1
Gene Sequence

>MS.gene86900

ATGGTTAAAGATATTGCTCGACATTCTGTTTTGATAACATATATTCTAAGAATTCTTACGACGTTGAAAGAGGAGATCGACGTTGCTCAGACGACCGAAGCGTTTTCGACATCTGTTTCGACTAATGCAAGTTCTTGTGAAGAAAGCTTGGTAATGGCTGCGACAATTGAATCAAAAGATGGAGATAGATTTCAAGAAGTGGGTTGTAGAACATCTGACACAATCTCTAATGAGCATCACATGAAGGTAGCTGCCGAAGCTATGGCTAAAATTACAGAATCGGCTGCTGGTTGCAGTCAATTGCAGGGTGATGTTGAAAACAAAGTTCTAGGAGGCTCATCTCTCTCCACCAAAAAGCATTCAATTTCTGTGCCAGTTTATGTAGATGAATTAGTAAAGGTGGAGTCAGTATCAGAAACATTGAGTACAGAAATTGTACTTGAAATTGCACTTCATGTTAATCAGGCACGTCTTGAGGGGTTAGTAGTACATTCAGTCGCCGAACCTAGAGTGAGTTGGATAAAACCGGTTGAAAAACATTCAGTCACCGAACCTGTTGTTAGTATTGAGGAGAAGTTGAATGTTCAAAATTTAAATGATGCAAAAGAAGGCACTCATCCTGTTCAGTGTCGAGTAGTTACTATGCCGGAGATTGTGATTTCGGGTTCATATGCTAATAAATCCAGGCCAGTGGAGTACAATCAGGTTGCACACTCGCCTGTTTTGGGAAGTCCTGGAACAAATCCTCAATCGAAGAATGAAAACCATCTGAAGAATGATGCAATTTTGTCTTCAATTTCTAAACCTGTTGGGTTTGGACATGTGCAGGATTCTTCAAACTCACTTTTTAGCAATCAGGATCCCTGGATTATACACGATAACGGTGTTGAACAAAAGTTTGAGGGTCAATTGAATGATGGTCTCTATCAGACATTCAAACAAAATTTTACATTAAAAGAAGTTCGATATACCAAGGAAGACCAAGAACTTCGAGCTGTTGCTGAAAGTTCAACTGCATCTGTTGGTTTTCAGTCACGGAGTCTACCTACAAAGCCAAAGCCATCGGTAATTTCTAGCAGTGATATTGCAAAATTGTGTGTTCCGGCGCCAGCACCAAAACCTCCAGATCCATGGTTCTCGACGACGACGGGGAAATCCTATATCGTGAAGGAGATCACCACTACTGATTTTTCATTATGCATTGAAGATCTTGTACCAGTGGCTATCAGAAAGTATTTAAAAGCTATGATTTCAACGATGCGTCATTCTCAGACTATTGCTTCTGTTCCAGTGAGTAGTTCTGACAATGTGTTGGAGAGAATGTTTGCTTTATTTATGGAGCAGAGAAGCTTATGGCCAGAAATATGCAGCTTGCATGAAATTGGGGACCCTGGTACATCTGAGAGTATCATGTATAGGTATCTGCATGACCATATTGCATTGTTGGAGATAAATGGAAAACTGGAAACTTTTGAAACAATTAATGAGAAGATTCGAAAATGCTTTAAGAATCCTACACTCTCAAATAGTAGTTGTGCAAAAGTTTGTAAGCATACTTATGCTGCTTCAATAGTTAATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACAGAAGAAATCTTTGGTCCACTACTTCCAGTGATAACCGAAAATGAGAGTACGGTGGATGTCAATCCTCCGGAATCTGGTGCGATAATCATCCAGGCTTCAATTAGAGGATATTTGATTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGTTGTTCGCGGTCACTTGGTTAGAAGGCATGTTGTTGGAGCATCGCGATGTATTCAAGCTATTACTAAAATGCAAGCTCCATTTTCAGCTCCGAATCACAATTCAACAATGGGATTAGGAGTCAATATCGCGAGAATGAAAGGGGAGAAATTTAAGGAAGATGATTGGGGTTTTACCGAGCAATCTTCCTTTGTTAAAGACGTAATTCGTTCTCAGAATCTGAATGAATCACAGCAAGAAGCAATTTCAAGCTGTGTTAGTATGATGAATTGTTATCATGCTAATGTCAAACTTATATGGGGACCAACAGGAACCGGGAAGACAAAGACAGTTGCATGGGAAAACAGTCTTGATGATTGTAAAAAAGAAAGTATTCCTGCTTGTTTTGAACCTTCTAACTCTGAAATAGATCATTTCCTTAGAATGCTAAGTTTGCTTTCCAGTTCAAATCTGCTTCCTGAACTCGATGACAGAAGTCACCCAATGGGATTAGTACAACTCAATGCAATGCGTCTAGCTGACATTTTCTCCGATAATTCAAATTTTCGATCTTACATGATACTTTGTTTTACTGATATCATTCCAAGCACTGCTAGGGACAACTACAAGTTAGTGGAGACCTTAGTAGCTCACATATCTGACATCACAGAGGAGCATTTGGTGTTATATGCACAAATGGCTAATATTTTACATGTAATACTACAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTATATCATATTGTTTCCATTATCAATCACAGCAGCTTGCCCGATTCAATGTTGGTTTTTGAAGGAAGAGTAGCAGTACGTGCTTTACAACATGTACACAAAGGGACTGAGGTATTGAAATCAGTAAAGCTAGAATATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATGCTTGTGGAAAACTTGAATGGTATCTTGGAGACACGGTGGAAGCTGTTAAATCATTGACCAAGGCTCTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTTGTGAAGGCTGCCACAAATTTGGAATTCAATCTAACCCCAACTAGCATGCTTAATGCTTCCTGCGCACATCATAGGGCATCATTATTTGTCAACTTCTTTGCAAATCTTCATTGTTTTGTTCCTAATGTTTGTGAAGAGCAAGAAAGGAACTTTTTCGTTCGCAAGATCATGTCTGCTCACTGGGAGCTCAAGACTAAGGAATTAGAATCACAGTTGGTATCCATAACTTCTACTTTACAATTCCAACAATGGGACCCGGGTGGTCTCTTGTTCATTGAAGGAGTCAACAAGCATGGGAGCTCTTTATCAAAATGAGAACTCGAGGTCGAGTTCTTTATAGGTGGAGGAGACTGATGCAGGAGGGTTTTATTAGTAATTTAGTAGTATTTATTATTTAGCCAAATCTTAGTAATTTTCTAGAATTTTCTATTATTATTTCGTTTTATTTTATTTTGGCCCACGGGTTTGTTATTTCTTTCACTATATAAGCAGAACTTATGTAGCCATAGAGACACACTTTTTGATTCAATAAAATTATTCGAGATTTTCTCTCAATTCTGGTGGATTCCGGAAACCCTTATTTTGATAGGTTTGTAGCTTGCAACCCTATTTTCACAAGTTTGTCGCTTGCAAACTTGTTCTTTTCTATCTAGGTTTAGCGCTTGCTAACCATACGCTTCCGTACTGCGTCACCTTTAAACTTGTGTAGGATCAACATAGTTGTGCTTATTCTTGTCTCTACATTGCCAAATTGTTTTTTTTTTAGGTAACATTGGCGTTTGTTTTTTTCAAAGATTTGGGGGTTGGTTGTTCACTGTAAACCCAAAATGTGTTTACTAGGTTTTATATATTTTGAAGATTTAAAGTCCGATGAGATTGGCATTTCAATTGACAATTTAAACCTTAAACCCAAAACCCTAATGTCCATCGGTCCACAAGCCTTAATTTGA
Protein sequence

>MS.gene86900.t1

MVKDIARHSVLITYILRILTTLKEEIDVAQTTEAFSTSVSTNASSCEESLVMAATIESKDGDRFQEVGCRTSDTISNEHHMKVAAEAMAKITESAAGCSQLQGDVENKVLGGSSLSTKKHSISVPVYVDELVKVESVSETLSTEIVLEIALHVNQARLEGLVVHSVAEPRVSWIKPVEKHSVTEPVVSIEEKLNVQNLNDAKEGTHPVQCRVVTMPEIVISGSYANKSRPVEYNQVAHSPVLGSPGTNPQSKNENHLKNDAILSSISKPVGFGHVQDSSNSLFSNQDPWIIHDNGVEQKFEGQLNDGLYQTFKQNFTLKEVRYTKEDQELRAVAESSTASVGFQSRSLPTKPKPSVISSSDIAKLCVPAPAPKPPDPWFSTTTGKSYIVKEITTTDFSLCIEDLVPVAIRKYLKAMISTMRHSQTIASVPVSSSDNVLERMFALFMEQRSLWPEICSLHEIGDPGTSESIMYRYLHDHIALLEINGKLETFETINEKIRKCFKNPTLSNSSCAKVCKHTYAASIVNGGSVDETNLFIEPTILLDPPLDAEIMTEEIFGPLLPVITENESTVDVNPPESGAIIIQASIRGYLIRRALLKSKNVVKLQAVVRGHLVRRHVVGASRCIQAITKMQAPFSAPNHNSTMGLGVNIARMKGEKFKEDDWVQLNAMRLADIFSDNSNFRSYMILCFTDIIPSTARDNYKLVETLVAHISDITEEHLVLYAQMANILHVILQWPEINIKEIAEFFSKFACNAHTICDSELRPLGTGLYHIVSIINHSSLPDSMLVFEGRVAVRALQHVHKGTEVLKSVKLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYACGKLEWYLGDTVEAVKSLTKALDILRITHGFIYFEDLKSDEIGISIDNLNLKPKTLMSIGPQALI