Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86976.t1 | XP_013446167.2 | 75.3 | 296 | 71 | 2 | 1 | 296 | 1 | 294 | 2.80E-111 | 411.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86976.t1 | Q9T072 | 42.8 | 194 | 108 | 2 | 93 | 284 | 129 | 321 | 1.1e-31 | 138.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86976.t1 | G7IMB7 | 74.1 | 297 | 11 | 4 | 1 | 297 | 2 | 232 | 1.3e-102 | 382.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene86976.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86976.t1 | MTR_2g104590 | 74.074 | 297 | 11 | 4 | 1 | 297 | 2 | 232 | 4.93e-147 | 412 |
MS.gene86976.t1 | MTR_8g069740 | 74.074 | 270 | 68 | 2 | 1 | 270 | 1 | 268 | 1.64e-139 | 394 |
MS.gene86976.t1 | MTR_2g104650 | 68.243 | 296 | 74 | 4 | 1 | 296 | 1 | 276 | 2.92e-124 | 356 |
MS.gene86976.t1 | MTR_2g104550 | 41.608 | 286 | 146 | 6 | 13 | 286 | 33 | 309 | 4.45e-58 | 189 |
MS.gene86976.t1 | MTR_4g009540 | 38.111 | 307 | 154 | 8 | 14 | 286 | 24 | 328 | 1.59e-54 | 180 |
MS.gene86976.t1 | MTR_2g104620 | 52.000 | 225 | 51 | 5 | 1 | 225 | 1 | 168 | 2.75e-53 | 172 |
MS.gene86976.t1 | MTR_8g009020 | 44.255 | 235 | 115 | 5 | 65 | 284 | 85 | 318 | 1.31e-51 | 172 |
MS.gene86976.t1 | MTR_2g104490 | 40.767 | 287 | 143 | 10 | 13 | 286 | 33 | 305 | 3.08e-51 | 171 |
MS.gene86976.t1 | MTR_4g009110 | 41.277 | 235 | 123 | 5 | 65 | 286 | 115 | 347 | 6.49e-48 | 164 |
MS.gene86976.t1 | MTR_5g014520 | 42.128 | 235 | 112 | 6 | 69 | 287 | 102 | 328 | 6.47e-47 | 160 |
MS.gene86976.t1 | MTR_4g009540 | 36.332 | 289 | 148 | 8 | 14 | 268 | 24 | 310 | 9.17e-46 | 157 |
MS.gene86976.t1 | MTR_2g104500 | 39.568 | 278 | 139 | 8 | 13 | 284 | 13 | 267 | 1.19e-45 | 155 |
MS.gene86976.t1 | MTR_8g009010 | 36.455 | 299 | 120 | 9 | 13 | 284 | 12 | 267 | 8.02e-45 | 154 |
MS.gene86976.t1 | MTR_2g104490 | 39.033 | 269 | 137 | 10 | 13 | 268 | 33 | 287 | 1.82e-43 | 150 |
MS.gene86976.t1 | MTR_5g014600 | 43.878 | 196 | 98 | 4 | 103 | 286 | 137 | 332 | 2.70e-43 | 151 |
MS.gene86976.t1 | MTR_2g104560 | 43.939 | 198 | 89 | 6 | 96 | 284 | 36 | 220 | 3.26e-43 | 148 |
MS.gene86976.t1 | MTR_5g014560 | 38.967 | 213 | 115 | 5 | 86 | 287 | 94 | 302 | 1.15e-42 | 149 |
MS.gene86976.t1 | MTR_4g097940 | 41.081 | 185 | 95 | 4 | 107 | 286 | 148 | 323 | 4.41e-42 | 147 |
MS.gene86976.t1 | MTR_2g010450 | 43.182 | 176 | 97 | 2 | 110 | 284 | 173 | 346 | 3.17e-41 | 146 |
MS.gene86976.t1 | MTR_0246s0020 | 39.303 | 201 | 119 | 3 | 90 | 287 | 173 | 373 | 6.29e-41 | 146 |
MS.gene86976.t1 | MTR_2g104530 | 44.828 | 232 | 109 | 9 | 64 | 284 | 46 | 269 | 6.39e-41 | 143 |
MS.gene86976.t1 | MTR_5g014640 | 39.796 | 196 | 109 | 3 | 97 | 290 | 137 | 325 | 2.85e-39 | 140 |
MS.gene86976.t1 | MTR_0250s0040 | 39.037 | 187 | 108 | 3 | 103 | 287 | 77 | 259 | 2.91e-39 | 139 |
MS.gene86976.t1 | MTR_0011s0210 | 41.279 | 172 | 97 | 2 | 114 | 284 | 183 | 351 | 5.81e-39 | 140 |
MS.gene86976.t1 | MTR_4g067010 | 32.770 | 296 | 171 | 10 | 10 | 286 | 28 | 314 | 3.15e-38 | 137 |
MS.gene86976.t1 | MTR_4g066460 | 40.609 | 197 | 108 | 5 | 91 | 286 | 134 | 322 | 8.03e-38 | 136 |
MS.gene86976.t1 | MTR_4g097920 | 38.919 | 185 | 99 | 4 | 107 | 286 | 133 | 308 | 1.34e-37 | 135 |
MS.gene86976.t1 | MTR_4g092700 | 42.045 | 176 | 98 | 3 | 114 | 288 | 158 | 330 | 1.61e-37 | 136 |
MS.gene86976.t1 | MTR_0011s0260 | 40.116 | 172 | 99 | 2 | 114 | 284 | 183 | 351 | 1.78e-37 | 136 |
MS.gene86976.t1 | MTR_4g097920 | 38.919 | 185 | 99 | 4 | 107 | 286 | 148 | 323 | 2.16e-37 | 135 |
MS.gene86976.t1 | MTR_7g080780 | 38.306 | 248 | 135 | 5 | 39 | 284 | 80 | 311 | 2.19e-37 | 135 |
MS.gene86976.t1 | MTR_7g080780 | 38.306 | 248 | 135 | 5 | 39 | 284 | 93 | 324 | 2.42e-37 | 135 |
MS.gene86976.t1 | MTR_6g047570 | 33.557 | 298 | 174 | 11 | 3 | 287 | 44 | 330 | 7.29e-36 | 131 |
MS.gene86976.t1 | MTR_4g066380 | 32.899 | 307 | 164 | 8 | 10 | 287 | 27 | 320 | 7.14e-35 | 129 |
MS.gene86976.t1 | MTR_4g097950 | 36.946 | 203 | 117 | 4 | 91 | 285 | 47 | 246 | 1.40e-33 | 123 |
MS.gene86976.t1 | MTR_0246s0020 | 38.043 | 184 | 111 | 3 | 90 | 270 | 173 | 356 | 3.60e-33 | 125 |
MS.gene86976.t1 | MTR_0246s0050 | 31.837 | 245 | 140 | 7 | 51 | 287 | 90 | 315 | 7.28e-29 | 112 |
MS.gene86976.t1 | MTR_4g098035 | 31.837 | 245 | 140 | 7 | 51 | 287 | 111 | 336 | 7.45e-29 | 113 |
MS.gene86976.t1 | MTR_4g009510 | 40.341 | 176 | 89 | 6 | 117 | 290 | 45 | 206 | 2.45e-28 | 108 |
MS.gene86976.t1 | MTR_4g009420 | 38.506 | 174 | 84 | 4 | 118 | 290 | 47 | 198 | 2.86e-27 | 105 |
MS.gene86976.t1 | MTR_7g451650 | 35.057 | 174 | 95 | 4 | 118 | 290 | 42 | 198 | 4.40e-26 | 102 |
MS.gene86976.t1 | MTR_7g050350 | 36.486 | 148 | 80 | 3 | 144 | 290 | 2 | 136 | 3.08e-22 | 90.5 |
MS.gene86976.t1 | MTR_7g451650 | 36.486 | 148 | 80 | 3 | 144 | 290 | 2 | 136 | 3.08e-22 | 90.5 |
MS.gene86976.t1 | MTR_4g009420 | 37.179 | 156 | 75 | 4 | 118 | 272 | 47 | 180 | 6.19e-20 | 86.3 |
MS.gene86976.t1 | MTR_5g014550 | 37.302 | 126 | 75 | 2 | 143 | 267 | 53 | 175 | 3.80e-19 | 84.0 |
MS.gene86976.t1 | MTR_7g451650 | 35.256 | 156 | 83 | 5 | 118 | 272 | 42 | 180 | 6.22e-19 | 83.2 |
MS.gene86976.t1 | MTR_6g047550 | 43.011 | 93 | 52 | 1 | 90 | 181 | 148 | 240 | 5.75e-15 | 73.9 |
MS.gene86976.t1 | MTR_5g030430 | 24.852 | 169 | 114 | 3 | 99 | 254 | 478 | 646 | 1.61e-12 | 68.2 |
MS.gene86976.t1 | MTR_8g064700 | 24.664 | 223 | 143 | 7 | 65 | 265 | 179 | 398 | 2.72e-12 | 67.0 |
MS.gene86976.t1 | MTR_3g030700 | 27.545 | 167 | 115 | 4 | 104 | 267 | 189 | 352 | 6.39e-11 | 62.8 |
MS.gene86976.t1 | MTR_1g072320 | 23.429 | 175 | 118 | 4 | 82 | 248 | 443 | 609 | 7.30e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86976.t1 | AT4G37850 | 42.784 | 194 | 108 | 2 | 93 | 284 | 129 | 321 | 1.94e-42 | 149 |
MS.gene86976.t1 | AT4G37850 | 42.784 | 194 | 108 | 2 | 93 | 284 | 129 | 321 | 1.94e-42 | 149 |
MS.gene86976.t1 | AT2G22750 | 47.778 | 180 | 92 | 2 | 106 | 283 | 118 | 297 | 6.03e-40 | 141 |
MS.gene86976.t1 | AT2G22750 | 46.667 | 180 | 94 | 1 | 106 | 283 | 142 | 321 | 7.85e-40 | 142 |
MS.gene86976.t1 | AT2G22750 | 46.667 | 180 | 94 | 1 | 106 | 283 | 146 | 325 | 9.53e-40 | 142 |
MS.gene86976.t1 | AT2G22750 | 47.778 | 180 | 91 | 3 | 106 | 283 | 118 | 296 | 1.79e-38 | 137 |
MS.gene86976.t1 | AT2G22750 | 46.667 | 180 | 93 | 2 | 106 | 283 | 146 | 324 | 2.60e-38 | 138 |
MS.gene86976.t1 | AT2G22760 | 31.674 | 221 | 147 | 4 | 69 | 286 | 74 | 293 | 8.45e-32 | 120 |
MS.gene86976.t1 | AT2G22770 | 37.297 | 185 | 103 | 3 | 114 | 285 | 132 | 316 | 4.81e-31 | 118 |
MS.gene86976.t1 | AT2G22760 | 31.188 | 202 | 136 | 3 | 69 | 268 | 74 | 274 | 3.23e-27 | 107 |
MS.gene86976.t1 | AT4G29930 | 24.887 | 221 | 143 | 6 | 72 | 271 | 11 | 229 | 1.01e-15 | 75.5 |
MS.gene86976.t1 | AT4G29930 | 25.229 | 218 | 140 | 6 | 72 | 268 | 11 | 226 | 1.27e-15 | 75.5 |
MS.gene86976.t1 | AT4G29930 | 25.229 | 218 | 140 | 6 | 72 | 268 | 11 | 226 | 1.27e-15 | 75.5 |
MS.gene86976.t1 | AT4G29930 | 26.699 | 206 | 132 | 6 | 72 | 271 | 11 | 203 | 1.32e-15 | 74.7 |
MS.gene86976.t1 | AT4G17880 | 26.512 | 215 | 110 | 7 | 69 | 254 | 363 | 558 | 7.77e-15 | 75.1 |
MS.gene86976.t1 | AT5G57150 | 24.020 | 204 | 147 | 4 | 72 | 268 | 12 | 214 | 8.22e-15 | 72.4 |
MS.gene86976.t1 | AT4G29930 | 26.214 | 206 | 130 | 5 | 72 | 271 | 11 | 200 | 8.45e-15 | 72.4 |
MS.gene86976.t1 | AT4G29930 | 26.601 | 203 | 127 | 5 | 72 | 268 | 11 | 197 | 1.13e-14 | 72.4 |
MS.gene86976.t1 | AT4G09820 | 32.680 | 153 | 76 | 4 | 102 | 253 | 351 | 477 | 1.50e-14 | 73.9 |
MS.gene86976.t1 | AT5G57150 | 24.138 | 203 | 146 | 4 | 72 | 267 | 12 | 213 | 2.09e-14 | 72.0 |
MS.gene86976.t1 | AT5G46760 | 28.659 | 164 | 83 | 5 | 111 | 254 | 412 | 561 | 4.60e-14 | 72.8 |
MS.gene86976.t1 | AT5G57150 | 23.415 | 205 | 149 | 4 | 72 | 269 | 13 | 216 | 2.41e-13 | 68.2 |
MS.gene86976.t1 | AT1G32640 | 27.044 | 159 | 103 | 3 | 104 | 254 | 442 | 595 | 3.65e-13 | 70.1 |
MS.gene86976.t1 | AT5G57150 | 23.415 | 205 | 149 | 4 | 72 | 269 | 13 | 216 | 3.72e-13 | 67.8 |
MS.gene86976.t1 | AT5G57150 | 23.963 | 217 | 156 | 5 | 72 | 280 | 12 | 227 | 5.25e-13 | 68.2 |
MS.gene86976.t1 | AT1G63650 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 1.82e-11 | 65.1 |
MS.gene86976.t1 | AT1G63650 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 1.82e-11 | 65.1 |
MS.gene86976.t1 | AT1G63650 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 1.82e-11 | 65.1 |
MS.gene86976.t1 | AT5G41315 | 27.564 | 156 | 93 | 3 | 111 | 246 | 443 | 598 | 5.26e-11 | 63.5 |
MS.gene86976.t1 | AT5G41315 | 27.564 | 156 | 93 | 3 | 111 | 246 | 438 | 593 | 5.49e-11 | 63.5 |
MS.gene86976.t1 | AT2G46510 | 28.346 | 127 | 70 | 3 | 99 | 225 | 380 | 485 | 5.71e-11 | 63.5 |
MS.gene86976.t1 | AT5G41315 | 27.564 | 156 | 93 | 3 | 111 | 246 | 446 | 601 | 5.73e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTGAAGTGAGGGTTCT+AGG | 0.256835 | 2.3:+371290 | MS.gene86976:CDS |
ACTAGGCCAGTTGTGAAAAT+AGG | 0.274393 | 2.3:-370623 | None:intergenic |
TGGCACTGTCATTGTAATTA+AGG | 0.295958 | 2.3:-371217 | None:intergenic |
CAAGACATTGGTAGTTGTTA+TGG | 0.303801 | 2.3:-371399 | None:intergenic |
ACTACCAATGTCTTGCCATT+TGG | 0.326554 | 2.3:+371407 | MS.gene86976:CDS |
AAGAGTAGTGGCTACGTTGC+AGG | 0.356620 | 2.3:+371671 | MS.gene86976:CDS |
ATTACTTGCCTGAGCAATAA+TGG | 0.372110 | 2.3:-371447 | None:intergenic |
AGTATATAAGTTGTTGGTAT+TGG | 0.379293 | 2.3:-370716 | None:intergenic |
ACATAATAACAGAGAGGAAC+AGG | 0.423437 | 2.3:+370873 | MS.gene86976:CDS |
CTCTTCATCAAATATGTTGT+TGG | 0.428970 | 2.3:-370552 | None:intergenic |
CTAGGCCAGTTGTGAAAATA+GGG | 0.436339 | 2.3:-370622 | None:intergenic |
TAAGACAGTATATAAGTTGT+TGG | 0.443854 | 2.3:-370722 | None:intergenic |
ATGAACACTAAAGAATGTTA+TGG | 0.445823 | 2.3:+371248 | MS.gene86976:CDS |
AGCTTGAAGTGAGGGTTCTA+GGG | 0.452434 | 2.3:+371291 | MS.gene86976:CDS |
TCTGATTCATGATATCTTTG+AGG | 0.462411 | 2.3:-370577 | None:intergenic |
ATTTATACCTGGATTGAAGA+AGG | 0.472752 | 2.3:+370934 | MS.gene86976:CDS |
TAACATCACCATTATTGCTC+AGG | 0.473971 | 2.3:+371439 | MS.gene86976:CDS |
AAGGAGATGAGATCTTGTTA+TGG | 0.492453 | 2.3:-371198 | None:intergenic |
AGAACCCTCACTTCAAGCTC+TGG | 0.495246 | 2.3:-371287 | None:intergenic |
GAAGAAGACATCAAGAAGAA+AGG | 0.507699 | 2.3:+371158 | MS.gene86976:CDS |
GACATCAAGAAGAAAGGTGC+AGG | 0.512048 | 2.3:+371164 | MS.gene86976:CDS |
TTTGCCTTTGTCATCATCAA+AGG | 0.512672 | 2.3:+370793 | MS.gene86976:CDS |
TGTTGAATGAGAGACATTGA+TGG | 0.516688 | 2.3:-370660 | None:intergenic |
GATTCGCTGTGGGAAGCAAA+AGG | 0.520238 | 2.3:+371331 | MS.gene86976:CDS |
AGACTAACCTTCTTCAATCC+AGG | 0.524279 | 2.3:-370941 | None:intergenic |
ATTTCCAGAGCTTGAAGTGA+GGG | 0.525230 | 2.3:+371283 | MS.gene86976:CDS |
ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2.3:-370784 | None:intergenic |
ATGTTAAGAGTGTTTCCAAA+TGG | 0.530024 | 2.3:-371422 | None:intergenic |
GAACTTTCAGCATTTATACC+TGG | 0.532111 | 2.3:+370923 | MS.gene86976:CDS |
TTTAGTGTTCATTTCACCCA+TGG | 0.540015 | 2.3:-371237 | None:intergenic |
TCTTCTTTGAATTCGACCCT+CGG | 0.540602 | 2.3:-370823 | None:intergenic |
ACGGACAAGGTTCATGTACT+AGG | 0.549231 | 2.3:+371086 | MS.gene86976:CDS |
TGGACGAGTTGTTGTTGACT+AGG | 0.551791 | 2.3:-370640 | None:intergenic |
TGTTGGTATTGGTAATGAGC+TGG | 0.555632 | 2.3:-370705 | None:intergenic |
GAATCATGGTGTTGTTCAGT+TGG | 0.556807 | 2.3:-370770 | None:intergenic |
AATTACAATGACAGTGCCAT+GGG | 0.574092 | 2.3:+371221 | MS.gene86976:CDS |
AGTTGGTGGTAACAATGTAG+TGG | 0.574871 | 2.3:-370753 | None:intergenic |
GTTTCCAAATGGCAAGACAT+TGG | 0.577033 | 2.3:-371411 | None:intergenic |
TGAAGTGAGGGTTCTAGGGA+AGG | 0.581565 | 2.3:+371295 | MS.gene86976:CDS |
TAATTACAATGACAGTGCCA+TGG | 0.581993 | 2.3:+371220 | MS.gene86976:CDS |
CATTTCCAGAGCTTGAAGTG+AGG | 0.591406 | 2.3:+371282 | MS.gene86976:CDS |
AGTTGTGAAAATAGGGACAC+TGG | 0.603100 | 2.3:-370615 | None:intergenic |
TCATGGTGTTGTTCAGTTGG+TGG | 0.611030 | 2.3:-370767 | None:intergenic |
TTAGCCTTTGATGATGACAA+AGG | 0.628673 | 2.3:-370797 | None:intergenic |
AATGGCTGTGTAGACGGACA+AGG | 0.629049 | 2.3:+371073 | MS.gene86976:intron |
TGTTAATCAAGATTCGCTGT+GGG | 0.635001 | 2.3:+371321 | MS.gene86976:CDS |
GTGTTAATCAAGATTCGCTG+TGG | 0.639073 | 2.3:+371320 | MS.gene86976:CDS |
TCATCAAAGGCTAACAACCG+AGG | 0.644886 | 2.3:+370806 | MS.gene86976:CDS |
TAAATACAAGTTGACCGTGA+AGG | 0.646419 | 2.3:+371632 | MS.gene86976:CDS |
TGGGAAGCAAAAGGAAATTG+TGG | 0.650519 | 2.3:+371340 | MS.gene86976:CDS |
GGGACACTGGACTGATCTTG+TGG | 0.651566 | 2.3:-370602 | None:intergenic |
GCTCTGGAAATGTTTCATTG+TGG | 0.678911 | 2.3:-371271 | None:intergenic |
CATCAAAGGCTAACAACCGA+GGG | 0.679164 | 2.3:+370807 | MS.gene86976:CDS |
AGGAGAAGCTGTCAAGTACG+TGG | 0.701643 | 2.3:+371106 | MS.gene86976:CDS |
TAGATCACATAATAACAGAG+AGG | 0.731708 | 2.3:+370867 | MS.gene86976:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTAAGAAAGGAAT+TGG | - | chr2.3:370992-371011 | None:intergenic | 15.0% |
!! | CTATAAAATGACTTATCTAA+TGG | + | chr2.3:371055-371074 | MS.gene86976:intron | 20.0% |
!! | GAAACTTACATTGTAATATA+TGG | - | chr2.3:371569-371588 | None:intergenic | 20.0% |
!! | TCCAGAAAAAAAATTAAGAA+AGG | - | chr2.3:370998-371017 | None:intergenic | 20.0% |
!!! | ACTTTTATAGTAGTTATCAT+TGG | + | chr2.3:371025-371044 | MS.gene86976:intron | 20.0% |
!!! | TCCTTTCTTAATTTTTTTTC+TGG | + | chr2.3:370994-371013 | MS.gene86976:intron | 20.0% |
!!! | TGAATTGTTTTTCTTTTTTG+TGG | - | chr2.3:371475-371494 | None:intergenic | 20.0% |
! | AGTATATAAGTTGTTGGTAT+TGG | - | chr2.3:370719-370738 | None:intergenic | 25.0% |
! | ATGAACACTAAAGAATGTTA+TGG | + | chr2.3:371248-371267 | MS.gene86976:CDS | 25.0% |
! | TAAGACAGTATATAAGTTGT+TGG | - | chr2.3:370725-370744 | None:intergenic | 25.0% |
!! | TTGTAATTGATTCTACAGAT+GGG | + | chr2.3:371606-371625 | MS.gene86976:intron | 25.0% |
!! | TTTGTAATTGATTCTACAGA+TGG | + | chr2.3:371605-371624 | MS.gene86976:intron | 25.0% |
AGTGAAAAAACTAAGAGTAG+TGG | + | chr2.3:371659-371678 | MS.gene86976:CDS | 30.0% | |
ATTTATACCTGGATTGAAGA+AGG | + | chr2.3:370934-370953 | MS.gene86976:CDS | 30.0% | |
CTCTTCATCAAATATGTTGT+TGG | - | chr2.3:370555-370574 | None:intergenic | 30.0% | |
GATAAGAATCAAACTTGAGT+TGG | - | chr2.3:371523-371542 | None:intergenic | 30.0% | |
TAGATCACATAATAACAGAG+AGG | + | chr2.3:370867-370886 | MS.gene86976:CDS | 30.0% | |
TCTGATTCATGATATCTTTG+AGG | - | chr2.3:370580-370599 | None:intergenic | 30.0% | |
!! | ATGTTAAGAGTGTTTCCAAA+TGG | - | chr2.3:371425-371444 | None:intergenic | 30.0% |
!!! | TTTTTTCACTAGATCCTTCA+CGG | - | chr2.3:371649-371668 | None:intergenic | 30.0% |
AAGGAGATGAGATCTTGTTA+TGG | - | chr2.3:371201-371220 | None:intergenic | 35.0% | |
AATTACAATGACAGTGCCAT+GGG | + | chr2.3:371221-371240 | MS.gene86976:CDS | 35.0% | |
ACATAATAACAGAGAGGAAC+AGG | + | chr2.3:370873-370892 | MS.gene86976:CDS | 35.0% | |
ATGACAAAGGCAAAGAATCA+TGG | - | chr2.3:370787-370806 | None:intergenic | 35.0% | |
ATTACTTGCCTGAGCAATAA+TGG | - | chr2.3:371450-371469 | None:intergenic | 35.0% | |
GAACTTTCAGCATTTATACC+TGG | + | chr2.3:370923-370942 | MS.gene86976:CDS | 35.0% | |
GAAGAAGACATCAAGAAGAA+AGG | + | chr2.3:371158-371177 | MS.gene86976:CDS | 35.0% | |
TAACATCACCATTATTGCTC+AGG | + | chr2.3:371439-371458 | MS.gene86976:CDS | 35.0% | |
TAATTACAATGACAGTGCCA+TGG | + | chr2.3:371220-371239 | MS.gene86976:CDS | 35.0% | |
TGGCACTGTCATTGTAATTA+AGG | - | chr2.3:371220-371239 | None:intergenic | 35.0% | |
TGTTAATCAAGATTCGCTGT+GGG | + | chr2.3:371321-371340 | MS.gene86976:CDS | 35.0% | |
TGTTGAATGAGAGACATTGA+TGG | - | chr2.3:370663-370682 | None:intergenic | 35.0% | |
TTATCTAATGGCTGTGTAGA+CGG | + | chr2.3:371067-371086 | MS.gene86976:intron | 35.0% | |
TTTAGTGTTCATTTCACCCA+TGG | - | chr2.3:371240-371259 | None:intergenic | 35.0% | |
TTTGCCTTTGTCATCATCAA+AGG | + | chr2.3:370793-370812 | MS.gene86976:CDS | 35.0% | |
! | CAAGACATTGGTAGTTGTTA+TGG | - | chr2.3:371402-371421 | None:intergenic | 35.0% |
! | TAAATACAAGTTGACCGTGA+AGG | + | chr2.3:371632-371651 | MS.gene86976:CDS | 35.0% |
!! | TTAGCCTTTGATGATGACAA+AGG | - | chr2.3:370800-370819 | None:intergenic | 35.0% |
ACTACCAATGTCTTGCCATT+TGG | + | chr2.3:371407-371426 | MS.gene86976:CDS | 40.0% | |
ACTAGGCCAGTTGTGAAAAT+AGG | - | chr2.3:370626-370645 | None:intergenic | 40.0% | |
AGACTAACCTTCTTCAATCC+AGG | - | chr2.3:370944-370963 | None:intergenic | 40.0% | |
AGTTGTGAAAATAGGGACAC+TGG | - | chr2.3:370618-370637 | None:intergenic | 40.0% | |
ATTTCCAGAGCTTGAAGTGA+GGG | + | chr2.3:371283-371302 | MS.gene86976:CDS | 40.0% | |
CTAGGCCAGTTGTGAAAATA+GGG | - | chr2.3:370625-370644 | None:intergenic | 40.0% | |
GTGTTAATCAAGATTCGCTG+TGG | + | chr2.3:371320-371339 | MS.gene86976:CDS | 40.0% | |
GTTTCCAAATGGCAAGACAT+TGG | - | chr2.3:371414-371433 | None:intergenic | 40.0% | |
TCTTCTTTGAATTCGACCCT+CGG | - | chr2.3:370826-370845 | None:intergenic | 40.0% | |
TGGGAAGCAAAAGGAAATTG+TGG | + | chr2.3:371340-371359 | MS.gene86976:CDS | 40.0% | |
! | AGTGTCCCTATTTTCACAAC+TGG | + | chr2.3:370617-370636 | MS.gene86976:CDS | 40.0% |
!! | AGTTGGTGGTAACAATGTAG+TGG | - | chr2.3:370756-370775 | None:intergenic | 40.0% |
!! | GAATCATGGTGTTGTTCAGT+TGG | - | chr2.3:370773-370792 | None:intergenic | 40.0% |
!! | GCTCTGGAAATGTTTCATTG+TGG | - | chr2.3:371274-371293 | None:intergenic | 40.0% |
!! | TGTTGGTATTGGTAATGAGC+TGG | - | chr2.3:370708-370727 | None:intergenic | 40.0% |
ACGGACAAGGTTCATGTACT+AGG | + | chr2.3:371086-371105 | MS.gene86976:CDS | 45.0% | |
AGCTTGAAGTGAGGGTTCTA+GGG | + | chr2.3:371291-371310 | MS.gene86976:CDS | 45.0% | |
CATCAAAGGCTAACAACCGA+GGG | + | chr2.3:370807-370826 | MS.gene86976:CDS | 45.0% | |
CATTTCCAGAGCTTGAAGTG+AGG | + | chr2.3:371282-371301 | MS.gene86976:CDS | 45.0% | |
TCATCAAAGGCTAACAACCG+AGG | + | chr2.3:370806-370825 | MS.gene86976:CDS | 45.0% | |
! | GACATCAAGAAGAAAGGTGC+AGG | + | chr2.3:371164-371183 | MS.gene86976:CDS | 45.0% |
! | TGGACGAGTTGTTGTTGACT+AGG | - | chr2.3:370643-370662 | None:intergenic | 45.0% |
!! | TCATGGTGTTGTTCAGTTGG+TGG | - | chr2.3:370770-370789 | None:intergenic | 45.0% |
!! | TATATTATACAAATTAAATT+TGG | - | chr2.3:371545-371564 | None:intergenic | 5.0% |
AAGAGTAGTGGCTACGTTGC+AGG | + | chr2.3:371671-371690 | MS.gene86976:CDS | 50.0% | |
AATGGCTGTGTAGACGGACA+AGG | + | chr2.3:371073-371092 | MS.gene86976:intron | 50.0% | |
AGAACCCTCACTTCAAGCTC+TGG | - | chr2.3:371290-371309 | None:intergenic | 50.0% | |
AGGAGAAGCTGTCAAGTACG+TGG | + | chr2.3:371106-371125 | MS.gene86976:CDS | 50.0% | |
GAGCTTGAAGTGAGGGTTCT+AGG | + | chr2.3:371290-371309 | MS.gene86976:CDS | 50.0% | |
GATTCGCTGTGGGAAGCAAA+AGG | + | chr2.3:371331-371350 | MS.gene86976:CDS | 50.0% | |
!! | TGAAGTGAGGGTTCTAGGGA+AGG | + | chr2.3:371295-371314 | MS.gene86976:CDS | 50.0% |
GGGACACTGGACTGATCTTG+TGG | - | chr2.3:370605-370624 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 370530 | 371716 | 370530 | ID=MS.gene86976 |
chr2.3 | mRNA | 370530 | 371716 | 370530 | ID=MS.gene86976.t1;Parent=MS.gene86976 |
chr2.3 | exon | 370530 | 370955 | 370530 | ID=MS.gene86976.t1.exon1;Parent=MS.gene86976.t1 |
chr2.3 | CDS | 370530 | 370955 | 370530 | ID=cds.MS.gene86976.t1;Parent=MS.gene86976.t1 |
chr2.3 | exon | 371086 | 371460 | 371086 | ID=MS.gene86976.t1.exon2;Parent=MS.gene86976.t1 |
chr2.3 | CDS | 371086 | 371460 | 371086 | ID=cds.MS.gene86976.t1;Parent=MS.gene86976.t1 |
chr2.3 | exon | 371624 | 371716 | 371624 | ID=MS.gene86976.t1.exon3;Parent=MS.gene86976.t1 |
chr2.3 | CDS | 371624 | 371716 | 371624 | ID=cds.MS.gene86976.t1;Parent=MS.gene86976.t1 |
Gene Sequence |
Protein sequence |