AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86978

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86978.t1 MTR_2g104560 91.739 230 15 3 6 233 2 229 9.16e-152 421
MS.gene86978.t1 MTR_2g104550 47.291 203 91 4 37 230 118 313 2.09e-50 167
MS.gene86978.t1 MTR_8g009020 46.231 199 94 3 44 232 131 326 2.14e-50 167
MS.gene86978.t1 MTR_4g009540 47.692 195 86 3 46 229 142 331 1.66e-49 165
MS.gene86978.t1 MTR_4g009110 47.396 192 88 3 46 229 164 350 2.53e-47 160
MS.gene86978.t1 MTR_4g009540 49.425 174 72 3 46 208 142 310 2.35e-43 148
MS.gene86978.t1 MTR_2g104490 45.641 195 93 4 37 225 117 304 3.27e-42 145
MS.gene86978.t1 MTR_8g009010 40.889 225 87 5 9 224 80 267 3.35e-42 145
MS.gene86978.t1 MTR_5g014600 43.316 187 85 5 55 224 148 330 3.45e-41 143
MS.gene86978.t1 MTR_2g104590 43.056 216 90 10 18 224 28 219 1.76e-40 139
MS.gene86978.t1 MTR_5g014520 42.553 188 94 4 49 229 150 330 2.79e-40 141
MS.gene86978.t1 MTR_2g010450 43.258 178 90 4 53 224 174 346 1.62e-39 139
MS.gene86978.t1 MTR_2g104500 44.828 174 89 3 57 229 105 272 1.85e-39 137
MS.gene86978.t1 MTR_2g104530 43.956 182 94 4 46 225 95 270 1.96e-39 137
MS.gene86978.t1 MTR_5g014640 41.304 184 101 4 47 228 145 323 2.53e-38 135
MS.gene86978.t1 MTR_0246s0020 41.584 202 100 7 39 230 183 376 5.56e-38 136
MS.gene86978.t1 MTR_7g080780 45.745 188 92 4 46 232 141 319 6.76e-38 134
MS.gene86978.t1 MTR_0250s0040 37.339 233 118 8 16 230 40 262 8.95e-38 132
MS.gene86978.t1 MTR_7g080780 45.745 188 92 4 46 232 154 332 1.05e-37 134
MS.gene86978.t1 MTR_4g092700 40.449 178 90 4 55 224 157 326 8.47e-37 132
MS.gene86978.t1 MTR_2g104490 45.506 178 84 4 37 208 117 287 2.08e-36 130
MS.gene86978.t1 MTR_2g104650 43.519 216 93 8 26 224 61 264 4.95e-36 129
MS.gene86978.t1 MTR_0011s0260 37.288 177 109 2 55 230 182 357 8.17e-36 130
MS.gene86978.t1 MTR_4g097940 39.785 186 102 5 49 230 148 327 6.23e-35 127
MS.gene86978.t1 MTR_6g047570 39.583 192 107 4 43 230 147 333 6.71e-35 127
MS.gene86978.t1 MTR_0011s0210 37.288 177 109 2 55 230 182 357 1.27e-34 127
MS.gene86978.t1 MTR_8g069740 44.505 182 76 5 40 207 95 265 1.95e-34 124
MS.gene86978.t1 MTR_4g067010 36.702 188 114 2 43 230 136 318 7.09e-34 124
MS.gene86978.t1 MTR_4g066460 39.894 188 108 2 43 230 144 326 9.41e-34 124
MS.gene86978.t1 MTR_0246s0050 36.264 182 109 2 49 230 144 318 3.09e-33 122
MS.gene86978.t1 MTR_4g097920 37.968 187 104 5 49 230 133 312 3.62e-33 122
MS.gene86978.t1 MTR_4g098035 36.264 182 109 2 49 230 165 339 5.51e-33 122
MS.gene86978.t1 MTR_4g097920 37.968 187 104 5 49 230 148 327 5.81e-33 122
MS.gene86978.t1 MTR_4g066380 36.683 199 98 4 43 230 142 323 3.61e-32 120
MS.gene86978.t1 MTR_5g014560 35.961 203 116 4 34 229 109 304 8.12e-32 118
MS.gene86978.t1 MTR_0246s0020 40.659 182 90 7 39 210 183 356 2.71e-31 118
MS.gene86978.t1 MTR_4g097950 40.212 189 90 4 57 230 71 251 2.53e-29 110
MS.gene86978.t1 MTR_7g451650 31.696 224 121 4 1 224 1 192 1.19e-25 99.8
MS.gene86978.t1 MTR_4g009510 37.725 167 92 4 59 224 45 200 1.72e-25 99.4
MS.gene86978.t1 MTR_4g009420 30.263 228 119 7 1 224 1 192 2.38e-25 99.0
MS.gene86978.t1 MTR_7g050350 36.429 140 79 2 85 224 1 130 1.13e-22 90.1
MS.gene86978.t1 MTR_7g451650 36.429 140 79 2 85 224 1 130 1.13e-22 90.1
MS.gene86978.t1 MTR_7g451650 32.075 212 112 4 1 212 1 180 6.01e-22 89.7
MS.gene86978.t1 MTR_4g009420 30.556 216 110 7 1 212 1 180 2.07e-21 88.6
MS.gene86978.t1 MTR_6g047550 43.750 96 42 2 16 111 145 228 1.64e-16 76.6
MS.gene86978.t1 MTR_5g014550 36.434 129 68 4 86 207 54 175 7.70e-14 68.2
MS.gene86978.t1 MTR_8g027495 23.563 174 124 3 57 230 459 623 1.69e-12 66.6
MS.gene86978.t1 MTR_1g072320 28.777 139 91 2 57 187 471 609 2.00e-12 66.6
MS.gene86978.t1 MTR_7g117670 25.294 170 118 4 57 226 403 563 2.58e-12 66.2
MS.gene86978.t1 MTR_3g030700 26.667 225 147 6 15 232 160 373 1.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86978.t1 AT4G37850 41.848 184 92 5 49 224 145 321 2.39e-34 125
MS.gene86978.t1 AT4G37850 41.848 184 92 5 49 224 145 321 2.39e-34 125
MS.gene86978.t1 AT2G22760 37.634 186 99 5 39 216 106 282 3.73e-34 124
MS.gene86978.t1 AT2G22760 38.202 178 93 5 39 208 106 274 1.04e-31 117
MS.gene86978.t1 AT2G22770 38.542 192 91 5 54 224 130 315 6.79e-31 116
MS.gene86978.t1 AT2G22750 37.688 199 96 5 48 230 118 304 5.70e-29 110
MS.gene86978.t1 AT2G22750 37.688 199 96 5 48 230 142 328 1.05e-28 110
MS.gene86978.t1 AT2G22750 37.688 199 96 5 48 230 146 332 1.20e-28 110
MS.gene86978.t1 AT2G22750 37.688 199 95 6 48 230 118 303 1.72e-27 107
MS.gene86978.t1 AT2G22750 37.688 199 95 6 48 230 146 331 2.81e-27 107
MS.gene86978.t1 AT4G09820 32.394 142 76 3 42 183 349 470 4.53e-15 74.3
MS.gene86978.t1 AT5G46760 25.824 182 104 3 57 212 416 592 4.75e-12 65.5
MS.gene86978.t1 AT5G57150 25.000 212 127 7 1 196 9 204 7.93e-12 63.2
MS.gene86978.t1 AT5G57150 25.000 212 127 7 1 196 9 204 9.29e-12 63.2
MS.gene86978.t1 AT1G63650 29.412 153 86 4 53 185 402 552 1.03e-11 64.3
MS.gene86978.t1 AT1G63650 29.412 153 86 4 53 185 402 552 1.03e-11 64.3
MS.gene86978.t1 AT1G63650 29.412 153 86 4 53 185 402 552 1.03e-11 64.3
MS.gene86978.t1 AT5G41315 26.752 157 90 3 53 185 443 598 1.17e-11 64.3
MS.gene86978.t1 AT5G41315 26.752 157 90 3 53 185 446 601 1.22e-11 64.3
MS.gene86978.t1 AT5G41315 26.752 157 90 3 53 185 438 593 1.24e-11 64.3
MS.gene86978.t1 AT5G57150 25.000 212 127 7 1 196 9 204 1.70e-11 62.8
MS.gene86978.t1 AT1G12860 24.713 174 123 3 57 223 268 440 2.13e-11 63.2
MS.gene86978.t1 AT5G57150 24.454 229 142 7 1 214 9 221 2.30e-11 62.0
MS.gene86978.t1 AT1G01260 27.586 174 100 5 53 226 430 577 2.36e-11 63.2
MS.gene86978.t1 AT1G01260 27.586 174 100 5 53 226 430 577 2.36e-11 63.2
MS.gene86978.t1 AT1G01260 27.586 174 100 5 53 226 430 577 2.36e-11 63.2
MS.gene86978.t1 AT2G46510 39.394 66 40 0 57 122 396 461 2.67e-11 63.2
MS.gene86978.t1 AT4G29930 24.554 224 136 8 3 217 10 209 4.36e-11 61.2
MS.gene86978.t1 AT5G57150 25.118 211 127 7 1 196 9 203 5.10e-11 60.8
MS.gene86978.t1 AT4G29930 23.394 218 143 6 3 217 10 206 7.69e-11 60.5
MS.gene86978.t1 AT4G17880 27.473 182 108 6 57 227 417 585 9.23e-11 61.6

Find 48 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCACGTAATGATAATT+TGG 0.206550 2.3:-316783 MS.gene86978:CDS
ATGCCAATGGCCTCCACTTC+AGG 0.214258 2.3:+316740 None:intergenic
GGAGAATTGGTTCTCTAATA+TGG 0.295421 2.3:-318161 MS.gene86978:intron
CAGAAGCATCCAACAATAAT+AGG 0.297499 2.3:-317987 MS.gene86978:CDS
ACATAATGTCAGAGAGAAAA+AGG 0.300304 2.3:-317884 MS.gene86978:CDS
TTTCCATGTGTAGCAGCATT+AGG 0.345086 2.3:+317945 None:intergenic
GAACAATGTCCTATTATTGT+TGG 0.353321 2.3:+317978 None:intergenic
ATAGACAAGGTTTCTGTACT+TGG 0.374394 2.3:-316923 MS.gene86978:CDS
ACCAGCAGTGTGCTTCCATT+TGG 0.381044 2.3:-316611 MS.gene86978:CDS
TGGAGAATTGGTGGGAGAAT+TGG 0.381146 2.3:-318174 MS.gene86978:CDS
GTTCAAACTATTGTCAATGC+TGG 0.402081 2.3:-316657 MS.gene86978:CDS
CTATACCTAACATGGAGAAT+TGG 0.414546 2.3:-318186 None:intergenic
AGAGAGATTCATAGCACTTT+CGG 0.417342 2.3:-317847 MS.gene86978:CDS
GGCAGATGGGTGAGGAATAC+AGG 0.417383 2.3:-316472 MS.gene86978:intron
ATTGATGACAAAGTTGAAAC+AGG 0.417457 2.3:-316435 MS.gene86978:CDS
TTCAGGGAGGAGCACATGAT+TGG 0.447101 2.3:+316757 None:intergenic
TGCCAATGGCCTCCACTTCA+GGG 0.452486 2.3:+316741 None:intergenic
AAACATTACCTTAGCAATGA+TGG 0.455229 2.3:+316568 None:intergenic
CTCCCTGAAGTGGAGGCCAT+TGG 0.457623 2.3:-316743 MS.gene86978:CDS
CTACACATGGAAAGAATAAG+AGG 0.462322 2.3:-317935 MS.gene86978:CDS
TGTTGGATGCTTCTGATTGA+AGG 0.471742 2.3:+317995 None:intergenic
CTTCTCTGATTCTATGCCAA+TGG 0.479471 2.3:+316727 None:intergenic
TCCAAATGGAAGCACACTGC+TGG 0.484948 2.3:+316610 None:intergenic
TAAAGAACGCATATCAATGC+TGG 0.499426 2.3:-316873 MS.gene86978:CDS
AGCAATGATGGTAATGTTGA+GGG 0.515073 2.3:+316580 None:intergenic
TACCTAACATGGAGAATTGG+TGG 0.525198 2.3:-318183 None:intergenic
TATGATACCCGGCTTGAAGA+AGG 0.532421 2.3:-317823 MS.gene86978:intron
AAATGGAAGCACACTGCTGG+TGG 0.542174 2.3:+316613 None:intergenic
GCACTTTCGGCTATGATACC+CGG 0.547609 2.3:-317834 MS.gene86978:CDS
TCATGTGCTCCTCCCTGAAG+TGG 0.548063 2.3:-316753 MS.gene86978:CDS
GGAACTGACCTTCTTCAAGC+CGG 0.556400 2.3:+317815 None:intergenic
TAGCAATGATGGTAATGTTG+AGG 0.557198 2.3:+316579 None:intergenic
GTGCCTAATGCTGCTACACA+TGG 0.559444 2.3:-317948 MS.gene86978:CDS
TAAGAGGGTGAGAAGCTCAT+GGG 0.563045 2.3:-317919 MS.gene86978:CDS
CAACATTACCATCATTGCTA+AGG 0.570598 2.3:-316576 MS.gene86978:intron
ATAAGAGGGTGAGAAGCTCA+TGG 0.579940 2.3:-317920 MS.gene86978:CDS
GAACTGACCTTCTTCAAGCC+GGG 0.582458 2.3:+317816 None:intergenic
ATCAACTGCGAGAAACATGA+AGG 0.584639 2.3:-316686 MS.gene86978:CDS
CACTGCTGGTGGAAACATAG+AGG 0.588212 2.3:+316624 None:intergenic
ACCTAACATGGAGAATTGGT+GGG 0.590580 2.3:-318182 None:intergenic
TGTGCTCCTCCCTGAAGTGG+AGG 0.603078 2.3:-316750 MS.gene86978:CDS
AGAAGCTCATGGGAGATACA+AGG 0.603853 2.3:-317909 MS.gene86978:CDS
GAATCCAAATTATCATTACG+TGG 0.646914 2.3:+316779 None:intergenic
CATTGGCATAGAATCAGAGA+AGG 0.647651 2.3:-316726 MS.gene86978:CDS
TACACATGGAAAGAATAAGA+GGG 0.651853 2.3:-317934 MS.gene86978:CDS
TGGAGCAACAATGTTATGAG+AGG 0.657981 2.3:-316853 MS.gene86978:CDS
TTTACTTGTATAGATAGACA+AGG 0.695353 2.3:-316936 MS.gene86978:intron
CAATGGCCTCCACTTCAGGG+AGG 0.758935 2.3:+316744 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATAAATTAACAC+AGG - chr2.3:317260-317279 MS.gene86978:intron 10.0%
!!! AAATTTTTTAATAGAGATTA+TGG + chr2.3:317776-317795 None:intergenic 10.0%
!! TTGATAAAATGTTAATTACA+TGG - chr2.3:318080-318099 MS.gene86978:intron 15.0%
!!! AATAACTTTTTATAATGGAT+AGG - chr2.3:316882-316901 MS.gene86978:CDS 15.0%
!!! ATAATTAAGCTTGTTAATTT+TGG + chr2.3:317126-317145 None:intergenic 15.0%
!! AAAAAATCTATAGGATATGA+AGG - chr2.3:316554-316573 MS.gene86978:intron 20.0%
!! AAAAATCTATAGGATATGAA+GGG - chr2.3:316555-316574 MS.gene86978:intron 20.0%
!! AAACATGGAAATACTAAATA+TGG - chr2.3:316838-316857 MS.gene86978:CDS 20.0%
!! AAATAAAGAGTGAGAATAAA+AGG - chr2.3:317458-317477 MS.gene86978:intron 20.0%
!! AATAAAGAGTGAGAATAAAA+GGG - chr2.3:317459-317478 MS.gene86978:intron 20.0%
!! GACATAAAATAAATTAACAC+AGG - chr2.3:317190-317209 MS.gene86978:intron 20.0%
!!! TTAATTACATGGATTTTATG+TGG - chr2.3:318091-318110 MS.gene86978:intron 20.0%
!!! TTCAAGTATTTTTGTTGATA+AGG - chr2.3:317510-317529 MS.gene86978:intron 20.0%
!!! TTTTTACACTCTTAAGTTTT+AGG - chr2.3:317578-317597 MS.gene86978:intron 20.0%
! ATATATTGAAGAAGAATTGC+AGG + chr2.3:316793-316812 None:intergenic 25.0%
! TTTACTTGTATAGATAGACA+AGG - chr2.3:317648-317667 MS.gene86978:intron 25.0%
!! CTAAATATGGATTAAACATG+AGG - chr2.3:316851-316870 MS.gene86978:CDS 25.0%
!!! CTATAGATTTTTTTGACAGA+GGG + chr2.3:316547-316566 None:intergenic 25.0%
!!! GTTTTTTGTAGATCAAAACA+TGG - chr2.3:316823-316842 MS.gene86978:CDS 25.0%
!!! TGTCTTGTTCTTTTAAAGTA+AGG + chr2.3:317021-317040 None:intergenic 25.0%
AAACATTACCTTAGCAATGA+TGG + chr2.3:318019-318038 None:intergenic 30.0%
ACATAATGTCAGAGAGAAAA+AGG - chr2.3:316700-316719 MS.gene86978:CDS 30.0%
ATTATGACATGTGACTTATG+AGG - chr2.3:317547-317566 MS.gene86978:intron 30.0%
CCTCTGTCAAAAAAATCTAT+AGG - chr2.3:316545-316564 MS.gene86978:intron 30.0%
GAACAATGTCCTATTATTGT+TGG + chr2.3:316609-316628 None:intergenic 30.0%
GAATCCAAATTATCATTACG+TGG + chr2.3:317808-317827 None:intergenic 30.0%
GTAAATGTGAGTAACAAAGA+AGG - chr2.3:317168-317187 MS.gene86978:intron 30.0%
TACACATGGAAAGAATAAGA+GGG - chr2.3:316650-316669 MS.gene86978:CDS 30.0%
TCATCCACGTAATGATAATT+TGG - chr2.3:317801-317820 MS.gene86978:intron 30.0%
TTTGTTACTCACATTTACAG+AGG + chr2.3:317166-317185 None:intergenic 30.0%
! ATTGATGACAAAGTTGAAAC+AGG - chr2.3:318149-318168 MS.gene86978:intron 30.0%
! TAAGTTTGAGTTCTTATGCT+TGG + chr2.3:317100-317119 None:intergenic 30.0%
!!! CCTATAGATTTTTTTGACAG+AGG + chr2.3:316548-316567 None:intergenic 30.0%
!!! TTGAGGGTATTTTTTCCAAA+TGG + chr2.3:317991-318010 None:intergenic 30.0%
AGAGAGATTCATAGCACTTT+CGG - chr2.3:316737-316756 MS.gene86978:CDS 35.0%
ATAGACAAGGTTTCTGTACT+TGG - chr2.3:317661-317680 MS.gene86978:intron 35.0%
CAACATTACCATCATTGCTA+AGG - chr2.3:318008-318027 MS.gene86978:CDS 35.0%
CTACACATGGAAAGAATAAG+AGG - chr2.3:316649-316668 MS.gene86978:CDS 35.0%
GAGAAAAAGGAGACAAGAAA+CGG - chr2.3:316713-316732 MS.gene86978:CDS 35.0%
GTTCAAACTATTGTCAATGC+TGG - chr2.3:317927-317946 MS.gene86978:CDS 35.0%
TAAAGAACGCATATCAATGC+TGG - chr2.3:317711-317730 MS.gene86978:intron 35.0%
TTAACACAGGTGATTTCACA+TGG - chr2.3:317203-317222 MS.gene86978:intron 35.0%
TTCCTTAATCCGTATGCAAT+TGG + chr2.3:316955-316974 None:intergenic 35.0%
! AGCAATGATGGTAATGTTGA+GGG + chr2.3:318007-318026 None:intergenic 35.0%
! ATGGATTTTATGTGGCAGAT+GGG - chr2.3:318099-318118 MS.gene86978:intron 35.0%
! GGAGAATTGGTTCTCTAATA+TGG - chr2.3:316423-316442 MS.gene86978:CDS 35.0%
! TAGCAATGATGGTAATGTTG+AGG + chr2.3:318008-318027 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2.3:316929-316948 None:intergenic 35.0%
!! CAGAAGCATCCAACAATAAT+AGG - chr2.3:316597-316616 MS.gene86978:CDS 35.0%
ATCAACTGCGAGAAACATGA+AGG - chr2.3:317898-317917 MS.gene86978:CDS 40.0%
CATTGGCATAGAATCAGAGA+AGG - chr2.3:317858-317877 MS.gene86978:CDS 40.0%
CTTCTCTGATTCTATGCCAA+TGG + chr2.3:317860-317879 None:intergenic 40.0%
GTTACTCACATTTACAGAGG+AGG + chr2.3:317163-317182 None:intergenic 40.0%
TCGCTTTAGCCAATTGCATA+CGG - chr2.3:316943-316962 MS.gene86978:intron 40.0%
TGGAGCAACAATGTTATGAG+AGG - chr2.3:317731-317750 MS.gene86978:intron 40.0%
TGTTGGATGCTTCTGATTGA+AGG + chr2.3:316592-316611 None:intergenic 40.0%
TTTCCATGTGTAGCAGCATT+AGG + chr2.3:316642-316661 None:intergenic 40.0%
! AGCCAATTGCATACGGATTA+AGG - chr2.3:316950-316969 MS.gene86978:intron 40.0%
! CATGGATTTTATGTGGCAGA+TGG - chr2.3:318098-318117 MS.gene86978:intron 40.0%
AGAAGCTCATGGGAGATACA+AGG - chr2.3:316675-316694 MS.gene86978:CDS 45.0%
ATAAGAGGGTGAGAAGCTCA+TGG - chr2.3:316664-316683 MS.gene86978:CDS 45.0%
GAGTTCTTATGCTTGGAGCT+TGG + chr2.3:317093-317112 None:intergenic 45.0%
TAAGAGGGTGAGAAGCTCAT+GGG - chr2.3:316665-316684 MS.gene86978:CDS 45.0%
TGGAGAATTGGTGGGAGAAT+TGG - chr2.3:316410-316429 MS.gene86978:CDS 45.0%
TTCTTATGCTTGGAGCTTGG+TGG + chr2.3:317090-317109 None:intergenic 45.0%
! TATGATACCCGGCTTGAAGA+AGG - chr2.3:316761-316780 MS.gene86978:CDS 45.0%
! TTTTATGTGGCAGATGGGTG+AGG - chr2.3:318104-318123 MS.gene86978:intron 45.0%
!!! ATGAAATTATTTTTATAAAA+TGG + chr2.3:316464-316483 None:intergenic 5.0%
!!! ATTATAATAACTTTTTATAA+TGG - chr2.3:316877-316896 MS.gene86978:CDS 5.0%
ACCAGCAGTGTGCTTCCATT+TGG - chr2.3:317973-317992 MS.gene86978:CDS 50.0%
CACTGCTGGTGGAAACATAG+AGG + chr2.3:317963-317982 None:intergenic 50.0%
GAACTGACCTTCTTCAAGCC+GGG + chr2.3:316771-316790 None:intergenic 50.0%
GCACTTTCGGCTATGATACC+CGG - chr2.3:316750-316769 MS.gene86978:CDS 50.0%
GGAACTGACCTTCTTCAAGC+CGG + chr2.3:316772-316791 None:intergenic 50.0%
GTGCCTAATGCTGCTACACA+TGG - chr2.3:316636-316655 MS.gene86978:CDS 50.0%
! AAATGGAAGCACACTGCTGG+TGG + chr2.3:317974-317993 None:intergenic 50.0%
! TCCAAATGGAAGCACACTGC+TGG + chr2.3:317977-317996 None:intergenic 50.0%
! TTCAGGGAGGAGCACATGAT+TGG + chr2.3:317830-317849 None:intergenic 50.0%
ATGCCAATGGCCTCCACTTC+AGG + chr2.3:317847-317866 None:intergenic 55.0%
GGCAGATGGGTGAGGAATAC+AGG - chr2.3:318112-318131 MS.gene86978:intron 55.0%
TCATGTGCTCCTCCCTGAAG+TGG - chr2.3:317831-317850 MS.gene86978:CDS 55.0%
TGCCAATGGCCTCCACTTCA+GGG + chr2.3:317846-317865 None:intergenic 55.0%
CAATGGCCTCCACTTCAGGG+AGG + chr2.3:317843-317862 None:intergenic 60.0%
CTCCCTGAAGTGGAGGCCAT+TGG - chr2.3:317841-317860 MS.gene86978:CDS 60.0%
TGTGCTCCTCCCTGAAGTGG+AGG - chr2.3:317834-317853 MS.gene86978:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 316409 318197 316409 ID=MS.gene86978
chr2.3 mRNA 316409 318197 316409 ID=MS.gene86978.t1;Parent=MS.gene86978
chr2.3 exon 318162 318197 318162 ID=MS.gene86978.t1.exon1;Parent=MS.gene86978.t1
chr2.3 CDS 318162 318197 318162 ID=cds.MS.gene86978.t1;Parent=MS.gene86978.t1
chr2.3 exon 317824 318039 317824 ID=MS.gene86978.t1.exon2;Parent=MS.gene86978.t1
chr2.3 CDS 317824 318039 317824 ID=cds.MS.gene86978.t1;Parent=MS.gene86978.t1
chr2.3 exon 316577 316945 316577 ID=MS.gene86978.t1.exon3;Parent=MS.gene86978.t1
chr2.3 CDS 316577 316945 316577 ID=cds.MS.gene86978.t1;Parent=MS.gene86978.t1
chr2.3 exon 316409 316489 316409 ID=MS.gene86978.t1.exon4;Parent=MS.gene86978.t1
chr2.3 CDS 316409 316489 316409 ID=cds.MS.gene86978.t1;Parent=MS.gene86978.t1
Gene Sequence

>MS.gene86978

ATGGAGAATTGGTGGGAGAATTGGTTCTCTAATATGGTAATTAATTAACTAGCCATTTTATAAAAATAATTTCATTGTCAAGTTAATATCAATTTTGTCAAAGTATATGTATATGTTATGATAATATTTCTATTTCCCTCTGTCAAAAAAATCTATAGGATATGAAGGGTAGTGATAACTCCTTCAATCAGAAGCATCCAACAATAATAGGACATTGTTCTAATTCAGTGCCTAATGCTGCTACACATGGAAAGAATAAGAGGGTGAGAAGCTCATGGGAGATACAAGGTCACATAATGTCAGAGAGAAAAAGGAGACAAGAAACGGCAGAGAGATTCATAGCACTTTCGGCTATGATACCCGGCTTGAAGAAGGTCAGTTCCTGCAATTCTTCTTCAATATATGCAACATTCTGTTTTTTGTAGATCAAAACATGGAAATACTAAATATGGATTAAACATGAGGTTTATTATAATAACTTTTTATAATGGATAGGTTTCTTTGTTTTATGCTCTCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAATTGCATACGGATTAAGGAATGAAATAAAATAGTCAAATGTCATAGCAATTTTACTAAAATAACCTTACTTTAAAAGAACAAGACAAACTTAAAGTTGTATTGAAAATTGTGTGAGAGAGAAAAGTTTGAGACCACCAAGCTCCAAGCATAAGAACTCAAACTTAAATCCAAAATTAACAAGCTTAATTATCAGCACGTTAATTTCCTCCTCTGTAAATGTGAGTAACAAAGAAGGACATAAAATAAATTAACACAGGTGATTTCACATGGTGATTTCTATATTATGAAATATAATTTATATAAAATTAAATAATAAATTAACACAGGTGCAACAACAATTGAGATATTTATTGTCATGCAATGCTTTTTCACTCTAAGTTTTTTTTAAAAAGAATAAATTGAAACATTTAATTACTAACTAAAGTTAAATATAGTGATTTTGCATTTGTTTAATTTGAGAGAAATTGTCAATAAAAGAATATTTTTCTCTTGCATTTGTTTCAAATAAAGAGTGAGAATAAAAGGGAACGTATGATAGAAGAATGATGAAGATATTCAAGTATTTTTGTTGATAAGGTTTAGTAAATGTACATTATGACATGTGACTTATGAGGTGAGATAATTTTTACACTCTTAAGTTTTAGGTGAGATTCTTTATTGTGAGATTGATATATAACAATGTCATTAAATATTTTACTTGTATAGATAGACAAGGTTTCTGTACTTGGTGAAGCTATTAATTACGTGAAACAACTTAAAGAACGCATATCAATGCTGGAGCAACAATGTTATGAGAGGAATAAAAAAAGTAGCAAGTCCATAATCTCTATTAAAAAATTTCAATCTCATCCACGTAATGATAATTTGGATTCCAATCATGTGCTCCTCCCTGAAGTGGAGGCCATTGGCATAGAATCAGAGAAGGAACTAGTACTTATTAAAATCAACTGCGAGAAACATGAAGGCATTTTGTTCAAACTATTGTCAATGCTGGAAAATATGCACCTCTATGTTTCCACCAGCAGTGTGCTTCCATTTGGAAAAAATACCCTCAACATTACCATCATTGCTAAGGTAATGTTTTTATGTTTCAAATATGAATACTTGTTTGAAATTTTGAAGCATTGATAAAATGTTAATTACATGGATTTTATGTGGCAGATGGGTGAGGAATACAGGATAACAATAGAAGAATTGATGACAAAGTTGAAACAGGATGTTTTGAAGTTATATGACATGTAA
Protein sequence

>MS.gene86978.t1

MENWWENWFSNMDMKGSDNSFNQKHPTIIGHCSNSVPNAATHGKNKRVRSSWEIQGHIMSERKRRQETAERFIALSAMIPGLKKIDKVSVLGEAINYVKQLKERISMLEQQCYERNKKSSKSIISIKKFQSHPRNDNLDSNHVLLPEVEAIGIESEKELVLIKINCEKHEGILFKLLSMLENMHLYVSTSSVLPFGKNTLNITIIAKMGEEYRITIEELMTKLKQDVLKLYDM