AlfalfaGEDB | MS.gene87063

M. sativa cultivar XinJiangDaYe / MS.gene87063

KEGG: K07198
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87063.t1	XP_013449227.1	97.4	462	12	0	1	462	1	462	3.20E-255	890.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87063.t1	Q5W736	66.0	450	151	2	1	448	4	453	2.5e-176	619.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87063.t1	A0A072U0D5	97.4	462	12	0	1	462	1	462	2.3e-255	890.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87063.t1	MTR_7g072575	97.403	462	12	0	1	462	1	462	0.0	931
MS.gene87063.t1	MTR_4g029020	78.166	458	93	2	1	457	1	452	0.0	747
MS.gene87063.t1	MTR_5g075060	64.629	458	144	2	1	440	1	458	0.0	610
MS.gene87063.t1	MTR_3g466400	64.155	438	148	4	4	437	6	438	0.0	578
MS.gene87063.t1	MTR_2g016340	60.134	449	160	7	1	439	1	440	0.0	550
MS.gene87063.t1	MTR_4g131060	60.046	433	155	4	6	436	12	428	0.0	524
MS.gene87063.t1	MTR_8g086380	56.356	472	178	10	6	452	20	488	2.17e-179	512
MS.gene87063.t1	MTR_4g006970	55.251	438	193	3	6	441	14	450	1.66e-173	495
MS.gene87063.t1	MTR_1g013700	59.091	440	160	5	2	440	3	423	4.41e-171	487
MS.gene87063.t1	MTR_5g088350	54.128	436	187	8	12	444	13	438	1.74e-163	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87063.t1	AT5G58380	65.275	455	144	4	1	443	1	453	0.0	620
MS.gene87063.t1	AT5G07070	63.877	454	160	2	1	454	1	450	0.0	587
MS.gene87063.t1	AT5G45820	64.430	447	129	9	1	439	1	425	0.0	574
MS.gene87063.t1	AT5G01810	62.785	438	146	3	1	438	1	421	0.0	560
MS.gene87063.t1	AT5G01810	62.785	438	146	3	1	438	1	421	0.0	560
MS.gene87063.t1	AT4G18700	57.333	450	174	5	6	442	20	464	0.0	519
MS.gene87063.t1	AT5G10930	57.562	443	180	5	1	441	1	437	4.94e-179	508
MS.gene87063.t1	AT5G45810	56.561	442	175	5	6	433	22	460	3.48e-177	505
MS.gene87063.t1	AT5G25110	57.011	435	179	3	7	440	38	465	3.74e-176	503
MS.gene87063.t1	AT4G30960	58.486	436	158	4	7	436	19	437	5.24e-174	495

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Find 106 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAAGGTTTATAAAGT+TGG	0.361192	7.4:-32019956	MS.gene87063:CDS
AAAGCTGATATATGGTCGTG+CGG	0.674204	7.4:-32019515	MS.gene87063:CDS
AAAGGTTTATAAAGTTGGTA+TGG	0.461419	7.4:-32019951	MS.gene87063:CDS
AAGGCGTTTAAGTTGTTGCA+AGG	0.566615	7.4:+32019155	None:intergenic
AAGTTGGAAGGATCAAAGGA+AGG	0.599122	7.4:-32018957	MS.gene87063:CDS
AATTGTGTCTTCAAACAAAC+CGG	0.435382	7.4:+32019097	None:intergenic
AATTTGAAGGTTTCAGATTT+TGG	0.147013	7.4:-32019650	MS.gene87063:CDS
ACAACCTCAGCAACTCCAAC+AGG	0.466350	7.4:-32018769	MS.gene87063:CDS
ACTTCAGGAGCAACATATGC+AGG	0.563079	7.4:+32019566	None:intergenic
ACTTCCTGTTGGAGTTGCTG+AGG	0.575610	7.4:+32018765	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAAGAAAAAAGACGG+AGG	-	chr7.4:32019823-32019842	MS.gene87063:CDS	30.0%
AATTGTGTCTTCAAACAAAC+CGG	+	chr7.4:32019716-32019735	None:intergenic	30.0%
ATCAACTATAATCTCTAAGC+TGG	-	chr7.4:32019774-32019793	MS.gene87063:CDS	30.0%
ATGGAGATGTACAAGAAAAT+CGG	-	chr7.4:32019373-32019392	MS.gene87063:CDS	30.0%
ATGTACAAGAAAATCGGTAA+AGG	-	chr7.4:32019379-32019398	MS.gene87063:CDS	30.0%
ATTCCATGATCAAAATCTGA+TGG	-	chr7.4:32019354-32019373	MS.gene87063:CDS	30.0%
CAATTCAAAAGAAAGAGATG+CGG	-	chr7.4:32019731-32019750	MS.gene87063:CDS	30.0%
CTTATGCAAAGATATGAGAT+GGG	-	chr7.4:32018743-32018762	MS.gene87063:CDS	30.0%
GGGAATTCAAATTTCCTAAA+TGG	-	chr7.4:32019401-32019420	MS.gene87063:CDS	30.0%
TATGAGATGGGAAGATTATT+AGG	-	chr7.4:32018755-32018774	MS.gene87063:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	32018722	32020110	32018722	ID=MS.gene87063
chr7.4	mRNA	32018722	32020110	32018722	ID=MS.gene87063.t1;Parent=MS.gene87063
chr7.4	exon	32018722	32020110	32018722	ID=MS.gene87063.t1.exon1;Parent=MS.gene87063.t1
chr7.4	CDS	32018722	32020110	32018722	ID=cds.MS.gene87063.t1;Parent=MS.gene87063.t1

Gene Sequence

>MS.gene87063

ATGGAACCAAAGGGAAGTGTGCTTATGCAAAGATATGAGATGGGAAGATTATTAGGCCAAGGAACGTTTGCGAAGGTCTACCATGCTAGGAACCTTATAACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAAGAAAAGGTTTATAAAGTTGGTATGGTTGATCAAATTAAGCGTGAAATTTCAGTGATGAGATTAGTCAGACATCCGAATGTGGTTGAGCTTTACGAGGTAATGGCAAGTAAAACCAAAATTTTCATTGTGATGGAGTATGCAAGAGGCGGTGAGCTTTTCCACAAGATAGCAAAAGGGAAGCTCAAGACGGATGTTGCTAGGAGATATTTCCAGCAGCTGGTTAGCGCAGTTGACTACTGCCACAGCAGGGGTGTGTATCATCGAGATTTGAAACCCGAAAATCTACTACTGGATGAAAATGAAAATTTGAAGGTTTCAGATTTTGGTTTGAGTACTCTTTCTGAATCTAAGAGCCAAGATGGATTACTCCACACTACATGTGGTACGCCTGCATATGTTGCTCCTGAAGTGATAAACAGAAAGGGTTACGATGGGAGCAAAGCTGATATATGGTCGTGCGGAGTAATCTTGTATGTTCTATTGGCCGGTTATCTTCCATTCCATGATCAAAATCTGATGGAGATGTACAAGAAAATCGGTAAAGGGGAATTCAAATTTCCTAAATGGTTTGCACCAGAAGTTCGCCGGTTGTTGTCCAAAATATTGGATCCAAGTTTAAAGACTCGGATATCAATGGCCAAGATCATGGAAAATTCTTGGTTTAAAAAAGGATTAGAGAAGCCTGTTGTCATCGAGACCGAAAATAACGAACTAACTTCTCTGAATGCTGATGGAGTGTTTGAAGTCTCCGAGAACGGTGGTGATTCTAATACGGAGACAAAACAACAACAGGCGAAGCCTTGCAACAACTTAAACGCCTTTGATATCATCTCCTTCTCGTCTGGTTTTGATTTATCCGGTTTGTTTGAAGACACAATTCAAAAGAAAGAGATGCGGTTTACGTCTAACAAGCCTGCATCAACTATAATCTCTAAGCTGGAAGAGATTTGCAAGTGTCTTCAACTGAAAGTAAAGAAAAAAGACGGAGGTTTGTTAAAGTTGGAAGGATCAAAGGAAGGAAGGAAAGGTACTCTTAATATTGATGCCGAGATTTTCGAGATTACTCCTCTCTTCCATCTTGTGGAACTTAAGAAGTCTGATGGGGATACAGTGGAGTATGAGAAGCTTTTGCAACAGGAGATTAGACCAGCACTTAAGGACATTGTGTGGAACTGGCAAGGAGAACAACCTCAGCAACTCCAACAGGAAGTAGTACAAGAGGAGCAACAAACATCTATTACAGCTCAAATTTGA

Protein sequence

>MS.gene87063.t1

MEPKGSVLMQRYEMGRLLGQGTFAKVYHARNLITGMSVAIKVIDKEKVYKVGMVDQIKREISVMRLVRHPNVVELYEVMASKTKIFIVMEYARGGELFHKIAKGKLKTDVARRYFQQLVSAVDYCHSRGVYHRDLKPENLLLDENENLKVSDFGLSTLSESKSQDGLLHTTCGTPAYVAPEVINRKGYDGSKADIWSCGVILYVLLAGYLPFHDQNLMEMYKKIGKGEFKFPKWFAPEVRRLLSKILDPSLKTRISMAKIMENSWFKKGLEKPVVIETENNELTSLNADGVFEVSENGGDSNTETKQQQAKPCNNLNAFDIISFSSGFDLSGLFEDTIQKKEMRFTSNKPASTIISKLEEICKCLQLKVKKKDGGLLKLEGSKEGRKGTLNIDAEIFEITPLFHLVELKKSDGDTVEYEKLLQQEIRPALKDIVWNWQGEQPQQLQQEVVQEEQQTSITAQI