Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87102.t1 | AES79839.1 | 93.4 | 346 | 21 | 2 | 1 | 345 | 17 | 361 | 8.30E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87102.t1 | Q8W4L5 | 41.1 | 375 | 165 | 6 | 25 | 343 | 209 | 583 | 1.5e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87102.t1 | G7KY51 | 93.4 | 346 | 21 | 2 | 1 | 345 | 17 | 361 | 6.0e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87102.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87102.t1 | MTR_7g073240 | 93.353 | 346 | 21 | 2 | 1 | 345 | 17 | 361 | 0.0 | 671 |
| MS.gene87102.t1 | MTR_4g028130 | 49.737 | 380 | 150 | 6 | 1 | 343 | 213 | 588 | 1.87e-110 | 341 |
| MS.gene87102.t1 | MTR_2g011940 | 44.918 | 305 | 133 | 4 | 73 | 342 | 320 | 624 | 9.15e-78 | 251 |
| MS.gene87102.t1 | MTR_2g011940 | 44.918 | 305 | 133 | 4 | 73 | 342 | 320 | 624 | 1.74e-77 | 250 |
| MS.gene87102.t1 | MTR_2g011940 | 44.918 | 305 | 133 | 4 | 73 | 342 | 311 | 615 | 1.85e-76 | 252 |
| MS.gene87102.t1 | MTR_4g028130 | 54.245 | 212 | 94 | 2 | 1 | 212 | 213 | 421 | 7.70e-64 | 214 |
| MS.gene87102.t1 | MTR_4g028130 | 50.340 | 147 | 60 | 3 | 209 | 343 | 479 | 624 | 3.87e-38 | 144 |
| MS.gene87102.t1 | MTR_4g028130 | 54.245 | 212 | 94 | 2 | 1 | 212 | 213 | 421 | 6.64e-63 | 215 |
| MS.gene87102.t1 | MTR_4g028130 | 52.113 | 142 | 55 | 3 | 214 | 343 | 484 | 624 | 6.81e-38 | 144 |
| MS.gene87102.t1 | MTR_3g467380 | 48.069 | 233 | 108 | 8 | 1 | 225 | 233 | 460 | 1.14e-56 | 198 |
| MS.gene87102.t1 | MTR_3g467380 | 49.606 | 127 | 52 | 2 | 229 | 343 | 522 | 648 | 5.22e-30 | 121 |
| MS.gene87102.t1 | MTR_5g075410 | 48.947 | 190 | 91 | 3 | 36 | 222 | 254 | 440 | 2.61e-53 | 187 |
| MS.gene87102.t1 | MTR_5g075410 | 56.944 | 72 | 30 | 1 | 231 | 301 | 507 | 578 | 5.61e-18 | 85.5 |
| MS.gene87102.t1 | MTR_7g083700 | 38.835 | 103 | 62 | 1 | 105 | 206 | 126 | 228 | 3.64e-17 | 81.3 |
| MS.gene87102.t1 | MTR_7g059330 | 39.216 | 102 | 60 | 2 | 105 | 204 | 623 | 724 | 1.66e-16 | 81.3 |
| MS.gene87102.t1 | MTR_1g058350 | 38.571 | 140 | 64 | 7 | 82 | 207 | 50 | 181 | 2.36e-16 | 79.3 |
| MS.gene87102.t1 | MTR_8g023990 | 40.000 | 110 | 56 | 5 | 105 | 207 | 171 | 277 | 2.20e-14 | 74.3 |
| MS.gene87102.t1 | MTR_7g105370 | 43.000 | 100 | 50 | 5 | 110 | 205 | 65 | 161 | 1.12e-13 | 71.2 |
| MS.gene87102.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 105 | 192 | 117 | 205 | 2.08e-13 | 71.2 |
| MS.gene87102.t1 | MTR_5g053920 | 38.053 | 113 | 56 | 5 | 104 | 204 | 193 | 303 | 8.62e-13 | 68.9 |
| MS.gene87102.t1 | MTR_1g093600 | 34.483 | 145 | 66 | 6 | 92 | 209 | 168 | 310 | 1.33e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87102.t1 | AT4G32010 | 44.011 | 359 | 157 | 7 | 24 | 343 | 203 | 556 | 5.30e-86 | 275 |
| MS.gene87102.t1 | AT4G32010 | 43.526 | 363 | 157 | 8 | 24 | 343 | 203 | 560 | 3.94e-84 | 270 |
| MS.gene87102.t1 | AT2G30470 | 45.652 | 322 | 124 | 7 | 73 | 343 | 262 | 583 | 3.48e-78 | 255 |
| MS.gene87102.t1 | AT4G21550 | 39.928 | 278 | 146 | 7 | 38 | 299 | 254 | 526 | 5.56e-51 | 178 |
| MS.gene87102.t1 | AT4G21550 | 40.989 | 283 | 146 | 7 | 38 | 304 | 254 | 531 | 5.23e-46 | 167 |
| MS.gene87102.t1 | AT4G21550 | 39.015 | 264 | 140 | 7 | 38 | 285 | 254 | 512 | 5.10e-45 | 161 |
| MS.gene87102.t1 | AT3G26790 | 40.385 | 104 | 61 | 1 | 105 | 207 | 91 | 194 | 3.88e-18 | 84.3 |
| MS.gene87102.t1 | AT3G24650 | 38.211 | 123 | 74 | 2 | 105 | 225 | 571 | 693 | 1.30e-17 | 84.3 |
| MS.gene87102.t1 | AT1G28300 | 39.669 | 121 | 69 | 3 | 72 | 189 | 136 | 255 | 1.39e-17 | 83.2 |
| MS.gene87102.t1 | AT5G06250 | 40.458 | 131 | 59 | 5 | 105 | 218 | 45 | 173 | 1.17e-16 | 79.7 |
| MS.gene87102.t1 | AT5G06250 | 40.458 | 131 | 59 | 5 | 105 | 218 | 45 | 173 | 1.32e-16 | 79.0 |
| MS.gene87102.t1 | AT5G06250 | 40.458 | 131 | 59 | 5 | 105 | 218 | 45 | 173 | 1.50e-16 | 79.3 |
| MS.gene87102.t1 | AT5G06250 | 40.458 | 131 | 59 | 5 | 105 | 218 | 45 | 173 | 1.54e-16 | 79.0 |
| MS.gene87102.t1 | AT1G13260 | 40.678 | 118 | 63 | 5 | 104 | 216 | 186 | 301 | 1.67e-16 | 79.7 |
| MS.gene87102.t1 | AT5G06250 | 40.458 | 131 | 59 | 5 | 105 | 218 | 45 | 173 | 2.06e-16 | 78.6 |
| MS.gene87102.t1 | AT3G25730 | 38.655 | 119 | 64 | 5 | 105 | 216 | 182 | 298 | 1.86e-15 | 76.6 |
| MS.gene87102.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.10e-15 | 74.7 |
| MS.gene87102.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.45e-15 | 74.7 |
| MS.gene87102.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.68e-15 | 73.2 |
| MS.gene87102.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.68e-15 | 73.2 |
| MS.gene87102.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.84e-14 | 73.6 |
| MS.gene87102.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.84e-14 | 73.6 |
| MS.gene87102.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.22e-14 | 71.2 |
| MS.gene87102.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.22e-14 | 71.2 |
| MS.gene87102.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.22e-14 | 71.2 |
| MS.gene87102.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 8.70e-14 | 70.9 |
| MS.gene87102.t1 | AT2G46870 | 38.889 | 108 | 57 | 5 | 105 | 205 | 34 | 139 | 8.72e-14 | 71.6 |
| MS.gene87102.t1 | AT1G01030 | 35.878 | 131 | 69 | 6 | 105 | 222 | 55 | 183 | 4.75e-13 | 69.7 |
| MS.gene87102.t1 | AT1G01030 | 38.136 | 118 | 63 | 5 | 105 | 214 | 55 | 170 | 8.78e-13 | 68.9 |
| MS.gene87102.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 1.24e-12 | 68.6 |
| MS.gene87102.t1 | AT3G61970 | 37.037 | 108 | 59 | 4 | 105 | 205 | 22 | 127 | 1.38e-12 | 67.8 |
| MS.gene87102.t1 | AT4G01500 | 35.714 | 126 | 65 | 5 | 77 | 192 | 2 | 121 | 1.94e-12 | 67.8 |
| MS.gene87102.t1 | AT1G25560 | 38.393 | 112 | 55 | 5 | 105 | 204 | 194 | 303 | 2.59e-12 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7.4:+31373639 | MS.gene87102:CDS |
| TGGAATCTGTGGAGAATTTA+TGG | 0.172380 | 7.4:+31375083 | MS.gene87102:CDS |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7.4:-31373579 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7.4:+31373556 | MS.gene87102:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7.4:-31373368 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7.4:-31372937 | None:intergenic |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7.4:+31372730 | MS.gene87102:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7.4:-31372808 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7.4:-31372979 | None:intergenic |
| GTTTCAGCATCAATGCTTCT+TGG | 0.288269 | 7.4:-31374249 | None:intergenic |
| CATTGATGCTGAAACTTACT+TGG | 0.297346 | 7.4:+31374257 | MS.gene87102:CDS |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7.4:-31372734 | None:intergenic |
| TCACCCTTCTTTGCAATGAT+AGG | 0.346388 | 7.4:-31374673 | None:intergenic |
| CAAGAATTACAACAATTATC+TGG | 0.358413 | 7.4:+31372994 | MS.gene87102:CDS |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7.4:-31372910 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7.4:+31372748 | MS.gene87102:CDS |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | 7.4:+31373806 | MS.gene87102:intron |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7.4:-31372860 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | 7.4:+31374321 | MS.gene87102:CDS |
| GGAATCTGTGGAGAATTTAT+GGG | 0.424748 | 7.4:+31375084 | MS.gene87102:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7.4:-31372829 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7.4:+31373536 | MS.gene87102:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7.4:+31372751 | MS.gene87102:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7.4:+31373526 | MS.gene87102:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7.4:-31373308 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.473263 | 7.4:+31374124 | MS.gene87102:CDS |
| TTCCCCTTAGGTTCAACTCA+TGG | 0.477460 | 7.4:-31375227 | None:intergenic |
| ACAATGTTTGAATTAACTGT+TGG | 0.478449 | 7.4:-31374310 | None:intergenic |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7.4:-31372745 | None:intergenic |
| TCCCCTTAGGTTCAACTCAT+GGG | 0.485137 | 7.4:-31375226 | None:intergenic |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.489559 | 7.4:+31375063 | MS.gene87102:CDS |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7.4:+31373332 | MS.gene87102:CDS |
| GGCATCGGTTTCTTCTCTAC+AGG | 0.493803 | 7.4:+31373867 | MS.gene87102:CDS |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | 7.4:+31373810 | MS.gene87102:intron |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | 7.4:+31373845 | MS.gene87102:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7.4:+31373340 | MS.gene87102:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.505349 | 7.4:-31374670 | None:intergenic |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | 7.4:-31373835 | None:intergenic |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7.4:+31373816 | MS.gene87102:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7.4:+31373574 | MS.gene87102:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.518727 | 7.4:+31374669 | MS.gene87102:CDS |
| ATGGAGAAAGTTGGAATCTG+TGG | 0.530973 | 7.4:+31375072 | MS.gene87102:CDS |
| ATGTTTGAATTAACTGTTGG+AGG | 0.534643 | 7.4:-31374307 | None:intergenic |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.534779 | 7.4:+31373852 | MS.gene87102:CDS |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7.4:+31373630 | MS.gene87102:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | 7.4:-31372989 | None:intergenic |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7.4:+31373323 | MS.gene87102:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7.4:+31375095 | MS.gene87102:CDS |
| TTTGAATTAACTGTTGGAGG+TGG | 0.549434 | 7.4:-31374304 | None:intergenic |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7.4:+31373817 | MS.gene87102:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7.4:+31373525 | MS.gene87102:CDS |
| AACAGTTAATTCAAACATTG+TGG | 0.562770 | 7.4:+31374312 | MS.gene87102:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7.4:+31372801 | MS.gene87102:CDS |
| ACCATAGGATGAACGAGCAA+TGG | 0.564796 | 7.4:+31375026 | MS.gene87102:intron |
| GCTGAAACTTACTTGGGAAG+AGG | 0.565759 | 7.4:+31374264 | MS.gene87102:CDS |
| ATTGATGCTGAAACTTACTT+GGG | 0.573068 | 7.4:+31374258 | MS.gene87102:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7.4:+31372802 | MS.gene87102:CDS |
| TTAGGAACTACTAGCTCTTG+TGG | 0.580404 | 7.4:-31374172 | None:intergenic |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7.4:+31372754 | MS.gene87102:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7.4:+31372908 | MS.gene87102:CDS |
| AGTGTGAGAAGTGCTCAGAA+TGG | 0.598771 | 7.4:+31375053 | MS.gene87102:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7.4:-31373297 | None:intergenic |
| CCTCCTATCATTGCAAAGAA+GGG | 0.610794 | 7.4:+31374670 | MS.gene87102:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7.4:+31373818 | MS.gene87102:CDS |
| GAATCTGTGGAGAATTTATG+GGG | 0.628808 | 7.4:+31375085 | MS.gene87102:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | 7.4:+31373846 | MS.gene87102:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7.4:-31372859 | None:intergenic |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7.4:+31372932 | MS.gene87102:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7.4:-31373300 | None:intergenic |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7.4:+31373819 | MS.gene87102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATAAAAAAATAGTATA+GGG | - | chr7.4:31374783-31374802 | None:intergenic | 10.0% |
| !! | ATTCAATATAAAATAAAATG+AGG | - | chr7.4:31373194-31373213 | None:intergenic | 10.0% |
| !! | TAATGATAAAAAAATAGTAT+AGG | - | chr7.4:31374784-31374803 | None:intergenic | 10.0% |
| !!! | TTATAATTTTCATTTGTTAT+AGG | + | chr7.4:31374906-31374925 | MS.gene87102:intron | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | + | chr7.4:31374402-31374421 | MS.gene87102:intron | 10.0% |
| !! | AATGATCATAAATACAAAAA+TGG | - | chr7.4:31374088-31374107 | None:intergenic | 15.0% |
| !! | ATGATCATAAATACAAAAAT+GGG | - | chr7.4:31374087-31374106 | None:intergenic | 15.0% |
| !! | CAACATATTTAAAAAAAACA+TGG | + | chr7.4:31374813-31374832 | MS.gene87102:intron | 15.0% |
| !! | CATAAAATACTTTATATTTC+TGG | + | chr7.4:31375122-31375141 | MS.gene87102:intron | 15.0% |
| !!! | AATCTTTGAATATGTTTTAT+TGG | + | chr7.4:31374608-31374627 | MS.gene87102:intron | 15.0% |
| !!! | CAAAAATCTTTTTTTTTTGA+AGG | + | chr7.4:31374517-31374536 | MS.gene87102:intron | 15.0% |
| !!! | TGTTTTTTTTAAATATGTTG+AGG | - | chr7.4:31374813-31374832 | None:intergenic | 15.0% |
| !!! | TTTACTAAACTTTTCATTAT+AGG | + | chr7.4:31373031-31373050 | MS.gene87102:intron | 15.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | - | chr7.4:31373715-31373734 | None:intergenic | 20.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | - | chr7.4:31372992-31373011 | None:intergenic | 20.0% |
| !! | TGAAAAGTTTAGTAAAGTAA+TGG | - | chr7.4:31373027-31373046 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | - | chr7.4:31373120-31373139 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | + | chr7.4:31374452-31374471 | MS.gene87102:intron | 20.0% |
| !!! | AATAAATCTTGATTTTTGCA+AGG | + | chr7.4:31375160-31375179 | MS.gene87102:intron | 20.0% |
| !!! | ACTGCAAATTTTTTTGTAAA+AGG | - | chr7.4:31373796-31373815 | None:intergenic | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | - | chr7.4:31374752-31374771 | None:intergenic | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | + | chr7.4:31374462-31374481 | MS.gene87102:intron | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | + | chr7.4:31373556-31373575 | MS.gene87102:CDS | 20.0% |
| ! | AACAGTTAATTCAAACATTG+TGG | + | chr7.4:31374312-31374331 | MS.gene87102:CDS | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | - | chr7.4:31372748-31372767 | None:intergenic | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | + | chr7.4:31374124-31374143 | MS.gene87102:CDS | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | + | chr7.4:31373806-31373825 | MS.gene87102:intron | 25.0% |
| ! | ACAATGTTTGAATTAACTGT+TGG | - | chr7.4:31374313-31374332 | None:intergenic | 25.0% |
| ! | CAAGAATTACAACAATTATC+TGG | + | chr7.4:31372994-31373013 | MS.gene87102:CDS | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | - | chr7.4:31374431-31374450 | None:intergenic | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | + | chr7.4:31373736-31373755 | MS.gene87102:intron | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | + | chr7.4:31372748-31372767 | MS.gene87102:CDS | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | - | chr7.4:31374872-31374891 | None:intergenic | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | - | chr7.4:31374871-31374890 | None:intergenic | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | + | chr7.4:31374481-31374500 | MS.gene87102:intron | 25.0% |
| !! | TGATTTTTGCAAGGTTTTTA+AGG | + | chr7.4:31375169-31375188 | MS.gene87102:intron | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | - | chr7.4:31373275-31373294 | None:intergenic | 25.0% |
| !!! | ATATGTTTTATTGGTGTTGA+TGG | + | chr7.4:31374617-31374636 | MS.gene87102:intron | 25.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | - | chr7.4:31372737-31372756 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | + | chr7.4:31373450-31373469 | MS.gene87102:intron | 25.0% |
| AATTCTTGATCGGTAATCTT+AGG | - | chr7.4:31372982-31373001 | None:intergenic | 30.0% | |
| ATAGGTCAAATGTTTATGCT+AGG | + | chr7.4:31373049-31373068 | MS.gene87102:intron | 30.0% | |
| ATGTTTGAATTAACTGTTGG+AGG | - | chr7.4:31374310-31374329 | None:intergenic | 30.0% | |
| ATTGATGCTGAAACTTACTT+GGG | + | chr7.4:31374258-31374277 | MS.gene87102:CDS | 30.0% | |
| ATTTGTAAATAAATACCCCC+TGG | - | chr7.4:31373513-31373532 | None:intergenic | 30.0% | |
| GACTATACTAAAATTGATGC+AGG | + | chr7.4:31374645-31374664 | MS.gene87102:intron | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | + | chr7.4:31374424-31374443 | MS.gene87102:intron | 30.0% | |
| GTTTGTATGATTAGTACTCT+TGG | + | chr7.4:31373226-31373245 | MS.gene87102:intron | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | - | chr7.4:31373582-31373601 | None:intergenic | 30.0% | |
| TTGACTTCTCTATTAGAAGT+TGG | - | chr7.4:31374957-31374976 | None:intergenic | 30.0% | |
| ! | AATTGCTATTGAACTATGAG+TGG | - | chr7.4:31373678-31373697 | None:intergenic | 30.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | + | chr7.4:31372730-31372749 | MS.gene87102:CDS | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | - | chr7.4:31373371-31373390 | None:intergenic | 30.0% |
| ! | CTTTAACACATCATTGGTTA+TGG | - | chr7.4:31373269-31373288 | None:intergenic | 30.0% |
| ! | TCACAAGTTCTTTTCTTCTT+AGG | - | chr7.4:31374193-31374212 | None:intergenic | 30.0% |
| ! | TTTCTGCAATGTGTTATTAG+TGG | + | chr7.4:31373977-31373996 | MS.gene87102:intron | 30.0% |
| !! | AGCAGGATATATGTTTTAGA+AGG | + | chr7.4:31373591-31373610 | MS.gene87102:CDS | 30.0% |
| AACTGATAATAGGGTTTCGA+AGG | + | chr7.4:31373845-31373864 | MS.gene87102:CDS | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | + | chr7.4:31372754-31372773 | MS.gene87102:CDS | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | + | chr7.4:31373323-31373342 | MS.gene87102:CDS | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | + | chr7.4:31373846-31373865 | MS.gene87102:CDS | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | + | chr7.4:31375095-31375114 | MS.gene87102:CDS | 35.0% | |
| ATGCACCCTGATCTTATAAA+AGG | + | chr7.4:31374863-31374882 | MS.gene87102:intron | 35.0% | |
| ATGCATTGTGATTGAACCAT+AGG | + | chr7.4:31375011-31375030 | MS.gene87102:intron | 35.0% | |
| ATGGGAAGTTTCATTTCAGT+TGG | - | chr7.4:31374069-31374088 | None:intergenic | 35.0% | |
| CATTGATGCTGAAACTTACT+TGG | + | chr7.4:31374257-31374276 | MS.gene87102:CDS | 35.0% | |
| GAATCTGTGGAGAATTTATG+GGG | + | chr7.4:31375085-31375104 | MS.gene87102:CDS | 35.0% | |
| GGAAATTCAAATTCCTTTGG+TGG | + | chr7.4:31372751-31372770 | MS.gene87102:CDS | 35.0% | |
| GGAATCTGTGGAGAATTTAT+GGG | + | chr7.4:31375084-31375103 | MS.gene87102:CDS | 35.0% | |
| GTTAATGTCTTCTCGAATAG+TGG | - | chr7.4:31373311-31373330 | None:intergenic | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | + | chr7.4:31373526-31373545 | MS.gene87102:CDS | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | + | chr7.4:31372802-31372821 | MS.gene87102:CDS | 35.0% | |
| TGGAATCTGTGGAGAATTTA+TGG | + | chr7.4:31375083-31375102 | MS.gene87102:CDS | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | + | chr7.4:31373525-31373544 | MS.gene87102:CDS | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | + | chr7.4:31374321-31374340 | MS.gene87102:CDS | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | + | chr7.4:31372801-31372820 | MS.gene87102:CDS | 35.0% | |
| TTTGAATTAACTGTTGGAGG+TGG | - | chr7.4:31374307-31374326 | None:intergenic | 35.0% | |
| ! | CATGTGTCTAATTTGTCCTA+TGG | + | chr7.4:31374041-31374060 | MS.gene87102:intron | 35.0% |
| ! | GACATATTTTCCCCCTATTT+CGG | + | chr7.4:31373485-31373504 | MS.gene87102:intron | 35.0% |
| ! | GGTGCATTTAGTTTCACAAT+AGG | - | chr7.4:31374850-31374869 | None:intergenic | 35.0% |
| ! | TCAATAGCAAGAGTTGACTT+GGG | - | chr7.4:31372862-31372881 | None:intergenic | 35.0% |
| !! | AAGGTTTTGTATGCTGTATC+AGG | + | chr7.4:31375188-31375207 | MS.gene87102:intron | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | + | chr7.4:31373639-31373658 | MS.gene87102:CDS | 35.0% |
| !! | TGCAAAAGATTCTGAGACTT+AGG | - | chr7.4:31372832-31372851 | None:intergenic | 35.0% |
| !! | TTTTAGAAGGAGTACATGCT+TGG | + | chr7.4:31373604-31373623 | MS.gene87102:CDS | 35.0% |
| ACATAGCAATGTTATTCGCC+TGG | - | chr7.4:31374120-31374139 | None:intergenic | 40.0% | |
| ACCTCCTATCATTGCAAAGA+AGG | + | chr7.4:31374669-31374688 | MS.gene87102:CDS | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | + | chr7.4:31373536-31373555 | MS.gene87102:CDS | 40.0% | |
| ATGATCATTTCTTTCCCACC+AGG | + | chr7.4:31374099-31374118 | MS.gene87102:intron | 40.0% | |
| ATGGAGAAAGTTGGAATCTG+TGG | + | chr7.4:31375072-31375091 | MS.gene87102:CDS | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | + | chr7.4:31373630-31373649 | MS.gene87102:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | + | chr7.4:31374670-31374689 | MS.gene87102:CDS | 40.0% | |
| CGCTTAAGAATGCACAAATG+TGG | + | chr7.4:31373923-31373942 | MS.gene87102:intron | 40.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | - | chr7.4:31372863-31372882 | None:intergenic | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | + | chr7.4:31372882-31372901 | MS.gene87102:CDS | 40.0% | |
| GTTTCAGCATCAATGCTTCT+TGG | - | chr7.4:31374252-31374271 | None:intergenic | 40.0% | |
| TCACCCTTCTTTGCAATGAT+AGG | - | chr7.4:31374676-31374695 | None:intergenic | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | + | chr7.4:31373810-31373829 | MS.gene87102:intron | 40.0% | |
| TGTCATGTAGGCTCAAACTA+TGG | + | chr7.4:31373748-31373767 | MS.gene87102:intron | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | - | chr7.4:31372940-31372959 | None:intergenic | 40.0% | |
| TTCATTTCAGTTGGAGCCAT+AGG | - | chr7.4:31374060-31374079 | None:intergenic | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | - | chr7.4:31372913-31372932 | None:intergenic | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | + | chr7.4:31373574-31373593 | MS.gene87102:CDS | 40.0% | |
| ! | TTAGGAACTACTAGCTCTTG+TGG | - | chr7.4:31374175-31374194 | None:intergenic | 40.0% |
| AACATTTAACCGGATGGACC+CGG | + | chr7.4:31373816-31373835 | MS.gene87102:CDS | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | + | chr7.4:31372932-31372951 | MS.gene87102:CDS | 45.0% | |
| ACCATAGGATGAACGAGCAA+TGG | + | chr7.4:31375026-31375045 | MS.gene87102:intron | 45.0% | |
| AGCAATGTTATTCGCCTGGT+GGG | - | chr7.4:31374116-31374135 | None:intergenic | 45.0% | |
| CCCTTCTTTGCAATGATAGG+AGG | - | chr7.4:31374673-31374692 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | - | chr7.4:31373838-31373857 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | + | chr7.4:31373836-31373855 | MS.gene87102:CDS | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | - | chr7.4:31373837-31373856 | None:intergenic | 45.0% | |
| CTCCAATTCATCATGTCGCA+AGG | + | chr7.4:31372908-31372927 | MS.gene87102:CDS | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | - | chr7.4:31373303-31373322 | None:intergenic | 45.0% | |
| GCTGAAACTTACTTGGGAAG+AGG | + | chr7.4:31374264-31374283 | MS.gene87102:CDS | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | + | chr7.4:31375063-31375082 | MS.gene87102:CDS | 45.0% | |
| TAGCAATGTTATTCGCCTGG+TGG | - | chr7.4:31374117-31374136 | None:intergenic | 45.0% | |
| TCCATTGCTCGTTCATCCTA+TGG | - | chr7.4:31375030-31375049 | None:intergenic | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | + | chr7.4:31373852-31373871 | MS.gene87102:CDS | 45.0% |
| !! | AGTGTGAGAAGTGCTCAGAA+TGG | + | chr7.4:31375053-31375072 | MS.gene87102:CDS | 45.0% |
| !! | TTGCTTTTCACCACCACCAA+AGG | - | chr7.4:31372767-31372786 | None:intergenic | 45.0% |
| ACATTTAACCGGATGGACCC+GGG | + | chr7.4:31373817-31373836 | MS.gene87102:CDS | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | - | chr7.4:31373501-31373520 | None:intergenic | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | + | chr7.4:31373835-31373854 | MS.gene87102:CDS | 50.0% | |
| CTCGAATAGTGGCACAATGG+CGG | - | chr7.4:31373300-31373319 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | + | chr7.4:31373332-31373351 | MS.gene87102:CDS | 50.0% | |
| TACCCCCTGGTTCCGAAATA+GGG | - | chr7.4:31373500-31373519 | None:intergenic | 50.0% | |
| TTCCCCCTATTTCGGAACCA+GGG | + | chr7.4:31373493-31373512 | MS.gene87102:CDS | 50.0% | |
| TTTCCCCCTATTTCGGAACC+AGG | + | chr7.4:31373492-31373511 | MS.gene87102:CDS | 50.0% | |
| !! | GGCATCGGTTTCTTCTCTAC+AGG | + | chr7.4:31373867-31373886 | MS.gene87102:CDS | 50.0% |
| ACCCCCTGGTTCCGAAATAG+GGG | - | chr7.4:31373499-31373518 | None:intergenic | 55.0% | |
| ATTTAACCGGATGGACCCGG+GGG | + | chr7.4:31373819-31373838 | MS.gene87102:CDS | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | + | chr7.4:31373818-31373837 | MS.gene87102:CDS | 55.0% | |
| TCCCCCTATTTCGGAACCAG+GGG | + | chr7.4:31373494-31373513 | MS.gene87102:CDS | 55.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | - | chr7.4:31372811-31372830 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | + | chr7.4:31373340-31373359 | MS.gene87102:CDS | 55.0% |
| CCCCCTATTTCGGAACCAGG+GGG | + | chr7.4:31373495-31373514 | MS.gene87102:CDS | 60.0% | |
| CCCCCTGGTTCCGAAATAGG+GGG | - | chr7.4:31373498-31373517 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | - | chr7.4:31373828-31373847 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 31372730 | 31375237 | 31372730 | ID=MS.gene87102 |
| chr7.4 | mRNA | 31372730 | 31375237 | 31372730 | ID=MS.gene87102.t1;Parent=MS.gene87102 |
| chr7.4 | exon | 31372730 | 31373019 | 31372730 | ID=MS.gene87102.t1.exon1;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31372730 | 31373019 | 31372730 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31373289 | 31373385 | 31373289 | ID=MS.gene87102.t1.exon2;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31373289 | 31373385 | 31373289 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31373486 | 31373660 | 31373486 | ID=MS.gene87102.t1.exon3;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31373486 | 31373660 | 31373486 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31373815 | 31373888 | 31373815 | ID=MS.gene87102.t1.exon4;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31373815 | 31373888 | 31373815 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31374121 | 31374366 | 31374121 | ID=MS.gene87102.t1.exon5;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31374121 | 31374366 | 31374121 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31374667 | 31374710 | 31374667 | ID=MS.gene87102.t1.exon6;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31374667 | 31374710 | 31374667 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31375033 | 31375116 | 31375033 | ID=MS.gene87102.t1.exon7;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31375033 | 31375116 | 31375033 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| chr7.4 | exon | 31375210 | 31375237 | 31375210 | ID=MS.gene87102.t1.exon8;Parent=MS.gene87102.t1 |
| chr7.4 | CDS | 31375210 | 31375237 | 31375210 | ID=cds.MS.gene87102.t1;Parent=MS.gene87102.t1 |
| Gene Sequence |
| Protein sequence |
