Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87162.t1 | KEH22261.1 | 89.4 | 217 | 15 | 1 | 1 | 209 | 17 | 233 | 2.00E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87162.t1 | Q9S7L2 | 40.0 | 115 | 57 | 3 | 46 | 148 | 211 | 325 | 4.1e-17 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87162.t1 | A0A072TYJ9 | 89.4 | 217 | 15 | 1 | 1 | 209 | 17 | 233 | 1.5e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87162.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87162.t1 | MTR_7g035300 | 89.401 | 217 | 15 | 1 | 1 | 209 | 17 | 233 | 1.44e-144 | 402 |
| MS.gene87162.t1 | MTR_7g037260 | 43.096 | 239 | 80 | 6 | 26 | 208 | 119 | 357 | 8.54e-53 | 173 |
| MS.gene87162.t1 | MTR_7g037130 | 43.644 | 236 | 77 | 6 | 26 | 205 | 119 | 354 | 2.91e-49 | 164 |
| MS.gene87162.t1 | MTR_7g451170 | 40.698 | 258 | 89 | 7 | 15 | 208 | 154 | 411 | 6.97e-48 | 162 |
| MS.gene87162.t1 | MTR_4g088015 | 35.808 | 229 | 83 | 6 | 41 | 205 | 210 | 438 | 9.25e-36 | 130 |
| MS.gene87162.t1 | MTR_1g057980 | 33.068 | 251 | 95 | 6 | 16 | 193 | 44 | 294 | 2.09e-31 | 116 |
| MS.gene87162.t1 | MTR_7g035350 | 31.200 | 250 | 95 | 6 | 20 | 192 | 193 | 442 | 5.04e-26 | 104 |
| MS.gene87162.t1 | MTR_7g450950 | 39.286 | 196 | 77 | 5 | 21 | 174 | 125 | 320 | 3.37e-25 | 100 |
| MS.gene87162.t1 | MTR_3g077650 | 44.860 | 107 | 47 | 3 | 54 | 148 | 183 | 289 | 1.07e-20 | 89.4 |
| MS.gene87162.t1 | MTR_5g049190 | 42.202 | 109 | 51 | 3 | 48 | 144 | 15 | 123 | 6.96e-20 | 84.7 |
| MS.gene87162.t1 | MTR_4g105660 | 39.252 | 107 | 53 | 3 | 54 | 148 | 182 | 288 | 8.13e-19 | 84.0 |
| MS.gene87162.t1 | MTR_3g463400 | 35.652 | 115 | 62 | 3 | 54 | 156 | 135 | 249 | 8.16e-19 | 84.0 |
| MS.gene87162.t1 | MTR_5g070020 | 31.707 | 164 | 90 | 5 | 12 | 158 | 77 | 235 | 1.55e-18 | 82.8 |
| MS.gene87162.t1 | MTR_6g027340 | 38.614 | 101 | 52 | 3 | 75 | 169 | 50 | 146 | 2.12e-14 | 69.3 |
| MS.gene87162.t1 | MTR_7g061330 | 41.935 | 93 | 42 | 3 | 55 | 135 | 116 | 208 | 5.40e-14 | 70.5 |
| MS.gene87162.t1 | MTR_7g461410 | 41.935 | 93 | 42 | 3 | 55 | 135 | 116 | 208 | 5.40e-14 | 70.5 |
| MS.gene87162.t1 | MTR_7g061330 | 41.935 | 93 | 42 | 3 | 55 | 135 | 80 | 172 | 6.39e-14 | 70.1 |
| MS.gene87162.t1 | MTR_6g027360 | 38.384 | 99 | 51 | 3 | 77 | 169 | 114 | 208 | 7.45e-14 | 69.3 |
| MS.gene87162.t1 | MTR_5g010650 | 39.785 | 93 | 44 | 3 | 54 | 134 | 112 | 204 | 7.76e-14 | 69.7 |
| MS.gene87162.t1 | MTR_4g019370 | 37.391 | 115 | 52 | 5 | 55 | 149 | 41 | 155 | 1.23e-13 | 68.9 |
| MS.gene87162.t1 | MTR_1g026870 | 32.174 | 115 | 65 | 4 | 55 | 156 | 88 | 202 | 2.69e-13 | 68.6 |
| MS.gene87162.t1 | MTR_3g110028 | 33.913 | 115 | 63 | 4 | 55 | 156 | 88 | 202 | 5.93e-13 | 67.4 |
| MS.gene87162.t1 | MTR_4g128190 | 36.957 | 92 | 55 | 3 | 49 | 138 | 10 | 100 | 1.02e-11 | 62.4 |
| MS.gene87162.t1 | MTR_1g008970 | 39.796 | 98 | 55 | 4 | 77 | 171 | 127 | 223 | 1.24e-11 | 62.4 |
| MS.gene87162.t1 | MTR_4g082040 | 34.483 | 116 | 63 | 4 | 34 | 136 | 86 | 201 | 2.49e-11 | 62.4 |
| MS.gene87162.t1 | MTR_5g041570 | 35.455 | 110 | 54 | 4 | 55 | 147 | 137 | 246 | 2.67e-11 | 62.4 |
| MS.gene87162.t1 | MTR_3g052450 | 33.333 | 102 | 53 | 3 | 48 | 135 | 38 | 138 | 5.57e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87162.t1 | AT4G18770 | 40.000 | 115 | 57 | 3 | 46 | 148 | 211 | 325 | 9.63e-21 | 89.4 |
| MS.gene87162.t1 | AT3G27785 | 40.541 | 111 | 54 | 3 | 46 | 144 | 183 | 293 | 1.08e-19 | 86.7 |
| MS.gene87162.t1 | AT5G40360 | 40.678 | 118 | 56 | 3 | 44 | 148 | 150 | 266 | 1.38e-18 | 82.8 |
| MS.gene87162.t1 | AT2G25230 | 40.157 | 127 | 63 | 4 | 46 | 159 | 20 | 146 | 1.01e-17 | 79.0 |
| MS.gene87162.t1 | AT5G11050 | 39.640 | 111 | 55 | 3 | 47 | 145 | 100 | 210 | 1.09e-17 | 80.9 |
| MS.gene87162.t1 | AT5G58850 | 38.532 | 109 | 55 | 3 | 49 | 145 | 102 | 210 | 1.12e-17 | 80.9 |
| MS.gene87162.t1 | AT5G40430 | 35.758 | 165 | 89 | 6 | 46 | 193 | 48 | 212 | 2.31e-17 | 78.2 |
| MS.gene87162.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 55 | 132 | 84 | 173 | 4.38e-13 | 67.8 |
| MS.gene87162.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 55 | 132 | 84 | 173 | 4.38e-13 | 67.8 |
| MS.gene87162.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 55 | 132 | 84 | 173 | 4.38e-13 | 67.8 |
| MS.gene87162.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 55 | 132 | 84 | 173 | 4.84e-13 | 67.8 |
| MS.gene87162.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 55 | 132 | 84 | 173 | 5.23e-13 | 67.8 |
| MS.gene87162.t1 | AT3G53200 | 41.667 | 72 | 40 | 2 | 62 | 132 | 1 | 71 | 8.21e-13 | 65.1 |
| MS.gene87162.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 55 | 135 | 70 | 162 | 1.16e-12 | 66.6 |
| MS.gene87162.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 55 | 135 | 130 | 222 | 1.21e-12 | 66.6 |
| MS.gene87162.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 55 | 135 | 130 | 222 | 1.21e-12 | 66.6 |
| MS.gene87162.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 55 | 135 | 133 | 225 | 2.18e-12 | 65.9 |
| MS.gene87162.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 55 | 135 | 138 | 230 | 2.21e-12 | 65.5 |
| MS.gene87162.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 55 | 135 | 146 | 238 | 2.51e-12 | 65.5 |
| MS.gene87162.t1 | AT3G28470 | 32.673 | 101 | 55 | 3 | 48 | 135 | 10 | 110 | 5.63e-12 | 63.9 |
| MS.gene87162.t1 | AT1G57560 | 29.545 | 132 | 82 | 4 | 77 | 202 | 51 | 177 | 7.54e-12 | 63.2 |
| MS.gene87162.t1 | AT1G69560 | 26.590 | 173 | 102 | 6 | 1 | 153 | 74 | 241 | 8.72e-12 | 63.5 |
| MS.gene87162.t1 | AT1G69560 | 29.134 | 127 | 73 | 4 | 44 | 153 | 99 | 225 | 9.13e-12 | 63.5 |
| MS.gene87162.t1 | AT4G33450 | 43.243 | 74 | 37 | 2 | 77 | 149 | 55 | 124 | 1.09e-11 | 62.8 |
| MS.gene87162.t1 | AT2G47190 | 31.193 | 109 | 62 | 3 | 37 | 132 | 7 | 115 | 1.15e-11 | 62.8 |
| MS.gene87162.t1 | AT3G53200 | 45.614 | 57 | 30 | 1 | 77 | 132 | 48 | 104 | 1.41e-11 | 62.0 |
| MS.gene87162.t1 | AT1G57560 | 40.580 | 69 | 40 | 1 | 77 | 144 | 51 | 119 | 2.39e-11 | 62.0 |
| MS.gene87162.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 55 | 135 | 90 | 182 | 2.60e-11 | 62.8 |
| MS.gene87162.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 55 | 135 | 90 | 182 | 2.85e-11 | 62.8 |
| MS.gene87162.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 55 | 135 | 90 | 182 | 2.85e-11 | 62.8 |
| MS.gene87162.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 55 | 135 | 90 | 182 | 2.85e-11 | 62.8 |
| MS.gene87162.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 55 | 135 | 90 | 182 | 2.85e-11 | 62.8 |
Find 41 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTATGTGGAAACGTTTA+AGG | 0.181442 | 7.4:+64017073 | MS.gene87162:CDS |
| AACGATGATTATGAGTTATA+TGG | 0.223163 | 7.4:+64016998 | MS.gene87162:CDS |
| GGCATTCTCGACTTGCTTAA+TGG | 0.229142 | 7.4:-64016867 | None:intergenic |
| ACTACTCCAGAAGATGAATT+TGG | 0.261057 | 7.4:+64016953 | MS.gene87162:CDS |
| GATCAAGCCCACAACATATT+TGG | 0.264284 | 7.4:+64016773 | MS.gene87162:CDS |
| AAAAGAAACACCTTAATATC+TGG | 0.291683 | 7.4:-64016260 | None:intergenic |
| CCATTGATCAGCATTTATAT+TGG | 0.314785 | 7.4:-64015999 | None:intergenic |
| CCATCTTAAACCAGATATTA+AGG | 0.331529 | 7.4:+64016250 | MS.gene87162:CDS |
| GAATAGTATTCTGCTGCTTA+TGG | 0.333313 | 7.4:-64015946 | None:intergenic |
| GAAATTGATTTCCTGCTTCA+TGG | 0.333503 | 7.4:-64017044 | None:intergenic |
| ACCTTAAACGTTTCCACATA+AGG | 0.341962 | 7.4:-64017074 | None:intergenic |
| TATCCACCAAATTCATCTTC+TGG | 0.354153 | 7.4:-64016959 | None:intergenic |
| TAAGCAGCAGAATACTATTC+AGG | 0.381837 | 7.4:+64015949 | MS.gene87162:CDS |
| TAATCATCGTTGAATGTCAT+TGG | 0.431930 | 7.4:-64016986 | None:intergenic |
| TTCCTGCTTCATGGGAACCT+CGG | 0.444432 | 7.4:-64017035 | None:intergenic |
| TCCTGCTTCATGGGAACCTC+GGG | 0.444652 | 7.4:-64017034 | None:intergenic |
| ACAACATATTTGGAGACAAC+TGG | 0.446422 | 7.4:+64016783 | MS.gene87162:CDS |
| GTTGTCTCCAAATATGTTGT+GGG | 0.463375 | 7.4:-64016780 | None:intergenic |
| TGCTTATGGTAAATGAGAAC+GGG | 0.465009 | 7.4:-64015932 | None:intergenic |
| AATTTCATGAAGGCCTTATG+TGG | 0.471697 | 7.4:+64017061 | MS.gene87162:CDS |
| AAATTGATTTCCTGCTTCAT+GGG | 0.472609 | 7.4:-64017043 | None:intergenic |
| ATATTTGTATCCAATTTCAC+TGG | 0.483235 | 7.4:-64015891 | None:intergenic |
| CCTTAATATCTGGTTTAAGA+TGG | 0.484241 | 7.4:-64016250 | None:intergenic |
| AATGGACTACAAAAGAGAAT+AGG | 0.491834 | 7.4:+64016017 | MS.gene87162:CDS |
| TCCCGAGGTTCCCATGAAGC+AGG | 0.502564 | 7.4:+64017033 | MS.gene87162:CDS |
| AGTTGTCTCCAAATATGTTG+TGG | 0.504440 | 7.4:-64016781 | None:intergenic |
| GAAATTTCAAGAAGATTGCC+AGG | 0.513813 | 7.4:+64016809 | MS.gene87162:CDS |
| CCAATATAAATGCTGATCAA+TGG | 0.515462 | 7.4:+64015999 | MS.gene87162:CDS |
| TGAGAACGGGTTCTTGATCA+TGG | 0.521600 | 7.4:-64015919 | None:intergenic |
| CTGCTTATGGTAAATGAGAA+CGG | 0.536086 | 7.4:-64015933 | None:intergenic |
| TGGATCTCTTTCTAAATCGA+TGG | 0.536456 | 7.4:+64016198 | MS.gene87162:CDS |
| TAAAACAATGCATGGAGAGA+TGG | 0.560064 | 7.4:+64016225 | MS.gene87162:CDS |
| ATGGACCTTAAAACAATGCA+TGG | 0.570560 | 7.4:+64016217 | MS.gene87162:CDS |
| ACTCCAGAAGATGAATTTGG+TGG | 0.588319 | 7.4:+64016956 | MS.gene87162:CDS |
| TAAGGAACATCATATGGATG+AGG | 0.593905 | 7.4:+64015844 | None:intergenic |
| GCAGGAAATCAATTTCATGA+AGG | 0.597528 | 7.4:+64017051 | MS.gene87162:CDS |
| GAATGAGCCATTGAGTGAGG+AGG | 0.611909 | 7.4:+64016736 | MS.gene87162:intron |
| ACATAACTATCGTTACGTCC+TGG | 0.612302 | 7.4:-64016827 | None:intergenic |
| TGGTTGCAAAACTAGAGTGA+TGG | 0.623138 | 7.4:-64015871 | None:intergenic |
| TCGATTTAGAAAGAGATCCA+CGG | 0.651610 | 7.4:-64016195 | None:intergenic |
| GTAGAATGAGCCATTGAGTG+AGG | 0.657428 | 7.4:+64016733 | MS.gene87162:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATATATAGTTTTATTA+TGG | + | chr7.4:64016082-64016101 | MS.gene87162:intron | 10.0% |
| !! | GTCTATATATAATTAAATAG+AGG | - | chr7.4:64016687-64016706 | None:intergenic | 15.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | - | chr7.4:64016932-64016951 | None:intergenic | 20.0% |
| !! | ATAAAAATATTGCACATGAA+TGG | + | chr7.4:64016635-64016654 | MS.gene87162:intron | 20.0% |
| !! | TGCTAAAATAAGTGTTAAAA+AGG | - | chr7.4:64016291-64016310 | None:intergenic | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | - | chr7.4:64016318-64016337 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | + | chr7.4:64016447-64016466 | MS.gene87162:intron | 20.0% |
| ! | AAAAAATACACACATCCATT+AGG | - | chr7.4:64016572-64016591 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | - | chr7.4:64016263-64016282 | None:intergenic | 25.0% |
| ! | AACGATGATTATGAGTTATA+TGG | + | chr7.4:64016998-64017017 | MS.gene87162:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | - | chr7.4:64015894-64015913 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | + | chr7.4:64016554-64016573 | MS.gene87162:intron | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | - | chr7.4:64016928-64016947 | None:intergenic | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | + | chr7.4:64016926-64016945 | MS.gene87162:CDS | 25.0% |
| !!! | TGTAAAAGCATTATATGTGT+AGG | - | chr7.4:64016342-64016361 | None:intergenic | 25.0% |
| ATGGAAACAAATTGGTGAAA+TGG | + | chr7.4:64016654-64016673 | MS.gene87162:intron | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | + | chr7.4:64015999-64016018 | MS.gene87162:CDS | 30.0% | |
| CCATCTTAAACCAGATATTA+AGG | + | chr7.4:64016250-64016269 | MS.gene87162:CDS | 30.0% | |
| CCATTGATCAGCATTTATAT+TGG | - | chr7.4:64016002-64016021 | None:intergenic | 30.0% | |
| TAATCATCGTTGAATGTCAT+TGG | - | chr7.4:64016989-64017008 | None:intergenic | 30.0% | |
| ! | AAATTGATTTCCTGCTTCAT+GGG | - | chr7.4:64017046-64017065 | None:intergenic | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | - | chr7.4:64016253-64016272 | None:intergenic | 30.0% |
| ! | TTGTTTCTTACATTTGAGAC+CGG | + | chr7.4:64016600-64016619 | MS.gene87162:intron | 30.0% |
| ! | TTTTTATTATGTACTCCCTC+CGG | - | chr7.4:64016622-64016641 | None:intergenic | 30.0% |
| !! | AATGGACTACAAAAGAGAAT+AGG | + | chr7.4:64016017-64016036 | MS.gene87162:CDS | 30.0% |
| ACAACATATTTGGAGACAAC+TGG | + | chr7.4:64016783-64016802 | MS.gene87162:CDS | 35.0% | |
| ACTACTCCAGAAGATGAATT+TGG | + | chr7.4:64016953-64016972 | MS.gene87162:CDS | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | + | chr7.4:64016882-64016901 | MS.gene87162:CDS | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | - | chr7.4:64016784-64016803 | None:intergenic | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | + | chr7.4:64016217-64016236 | MS.gene87162:CDS | 35.0% | |
| CAAGAAAAAATCCAGGAACA+TGG | + | chr7.4:64016889-64016908 | MS.gene87162:CDS | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | - | chr7.4:64015936-64015955 | None:intergenic | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | + | chr7.4:64016809-64016828 | MS.gene87162:CDS | 35.0% | |
| GCACATGAATGGAAACAAAT+TGG | + | chr7.4:64016646-64016665 | MS.gene87162:intron | 35.0% | |
| GCAGGAAATCAATTTCATGA+AGG | + | chr7.4:64017051-64017070 | MS.gene87162:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | - | chr7.4:64016783-64016802 | None:intergenic | 35.0% | |
| TAAAACAATGCATGGAGAGA+TGG | + | chr7.4:64016225-64016244 | MS.gene87162:CDS | 35.0% | |
| TAAGCAGCAGAATACTATTC+AGG | + | chr7.4:64015949-64015968 | MS.gene87162:CDS | 35.0% | |
| TATCCACCAAATTCATCTTC+TGG | - | chr7.4:64016962-64016981 | None:intergenic | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | - | chr7.4:64016198-64016217 | None:intergenic | 35.0% | |
| TGCTTATGGTAAATGAGAAC+GGG | - | chr7.4:64015935-64015954 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | + | chr7.4:64016198-64016217 | MS.gene87162:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | + | chr7.4:64017061-64017080 | MS.gene87162:CDS | 35.0% |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | + | chr7.4:64015881-64015900 | MS.gene87162:CDS | 35.0% |
| ! | CTTAATTTTCACCATGTTCC+TGG | - | chr7.4:64016903-64016922 | None:intergenic | 35.0% |
| ! | GAAATTGATTTCCTGCTTCA+TGG | - | chr7.4:64017047-64017066 | None:intergenic | 35.0% |
| ! | GAATAGTATTCTGCTGCTTA+TGG | - | chr7.4:64015949-64015968 | None:intergenic | 35.0% |
| !! | TCTCTCCATGCATTGTTTTA+AGG | - | chr7.4:64016225-64016244 | None:intergenic | 35.0% |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | - | chr7.4:64016891-64016910 | None:intergenic | 35.0% |
| ACATAACTATCGTTACGTCC+TGG | - | chr7.4:64016830-64016849 | None:intergenic | 40.0% | |
| ACTCCAGAAGATGAATTTGG+TGG | + | chr7.4:64016956-64016975 | MS.gene87162:CDS | 40.0% | |
| GATCAAGCCCACAACATATT+TGG | + | chr7.4:64016773-64016792 | MS.gene87162:CDS | 40.0% | |
| TGGTTGCAAAACTAGAGTGA+TGG | - | chr7.4:64015874-64015893 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | + | chr7.4:64016178-64016197 | MS.gene87162:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr7.4:64016604-64016623 | MS.gene87162:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr7.4:64016603-64016622 | MS.gene87162:intron | 40.0% |
| !! | TGGATTAGAGTTTTATCCCG+AGG | + | chr7.4:64017018-64017037 | MS.gene87162:CDS | 40.0% |
| GTAGAATGAGCCATTGAGTG+AGG | + | chr7.4:64016733-64016752 | MS.gene87162:intron | 45.0% | |
| ! | GGCATTCTCGACTTGCTTAA+TGG | - | chr7.4:64016870-64016889 | None:intergenic | 45.0% |
| ! | TGAGAACGGGTTCTTGATCA+TGG | - | chr7.4:64015922-64015941 | None:intergenic | 45.0% |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | - | chr7.4:64016746-64016765 | None:intergenic | 45.0% |
| !!! | TTTTTTTTATTTATTTTATG+CGG | - | chr7.4:64016376-64016395 | None:intergenic | 5.0% |
| GAATGAGCCATTGAGTGAGG+AGG | + | chr7.4:64016736-64016755 | MS.gene87162:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | - | chr7.4:64017038-64017057 | None:intergenic | 50.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | - | chr7.4:64017037-64017056 | None:intergenic | 55.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | + | chr7.4:64017033-64017052 | MS.gene87162:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 64015857 | 64017093 | 64015857 | ID=MS.gene87162 |
| chr7.4 | mRNA | 64015857 | 64017093 | 64015857 | ID=MS.gene87162.t1;Parent=MS.gene87162 |
| chr7.4 | exon | 64015857 | 64016038 | 64015857 | ID=MS.gene87162.t1.exon1;Parent=MS.gene87162.t1 |
| chr7.4 | CDS | 64015857 | 64016038 | 64015857 | ID=cds.MS.gene87162.t1;Parent=MS.gene87162.t1 |
| chr7.4 | exon | 64016181 | 64016271 | 64016181 | ID=MS.gene87162.t1.exon2;Parent=MS.gene87162.t1 |
| chr7.4 | CDS | 64016181 | 64016271 | 64016181 | ID=cds.MS.gene87162.t1;Parent=MS.gene87162.t1 |
| chr7.4 | exon | 64016737 | 64017093 | 64016737 | ID=MS.gene87162.t1.exon3;Parent=MS.gene87162.t1 |
| chr7.4 | CDS | 64016737 | 64017093 | 64016737 | ID=cds.MS.gene87162.t1;Parent=MS.gene87162.t1 |
| Gene Sequence |
| Protein sequence |
