Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87180.t1 | XP_024632961.1 | 59.7 | 804 | 41 | 3 | 1 | 521 | 1 | 804 | 1.50E-224 | 788.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87180.t1 | Q9SZL8 | 25.2 | 310 | 180 | 6 | 50 | 324 | 72 | 364 | 3.1e-21 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87180.t1 | D3YBB9 | 50.7 | 737 | 92 | 5 | 44 | 509 | 76 | 812 | 2.7e-180 | 641.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87180.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87180.t1 | MTR_1g083640 | 93.165 | 278 | 19 | 0 | 1 | 278 | 1 | 278 | 0.0 | 542 |
| MS.gene87180.t1 | MTR_0558s0020 | 87.410 | 278 | 20 | 1 | 1 | 278 | 1 | 263 | 4.38e-178 | 502 |
| MS.gene87180.t1 | MTR_2g014100 | 86.957 | 253 | 24 | 2 | 1 | 252 | 1 | 245 | 4.42e-158 | 450 |
| MS.gene87180.t1 | MTR_8g446020 | 69.307 | 303 | 37 | 3 | 1 | 302 | 1 | 248 | 4.46e-136 | 394 |
| MS.gene87180.t1 | MTR_3g008240 | 84.404 | 218 | 19 | 1 | 1 | 218 | 1 | 203 | 5.98e-130 | 376 |
| MS.gene87180.t1 | MTR_6g090505 | 72.593 | 270 | 59 | 3 | 81 | 337 | 1 | 268 | 6.03e-130 | 383 |
| MS.gene87180.t1 | MTR_6g090505 | 71.429 | 42 | 12 | 0 | 319 | 360 | 321 | 362 | 1.86e-11 | 66.2 |
| MS.gene87180.t1 | MTR_4g040430 | 83.945 | 218 | 15 | 3 | 1 | 218 | 1 | 198 | 3.04e-125 | 364 |
| MS.gene87180.t1 | MTR_0337s0040 | 67.384 | 279 | 37 | 2 | 1 | 279 | 1 | 225 | 4.13e-123 | 360 |
| MS.gene87180.t1 | MTR_5g071590 | 87.293 | 181 | 20 | 1 | 1 | 181 | 1 | 178 | 9.60e-113 | 332 |
| MS.gene87180.t1 | MTR_1g055240 | 92.308 | 143 | 11 | 0 | 106 | 248 | 2 | 144 | 4.81e-93 | 280 |
| MS.gene87180.t1 | MTR_0019s0290 | 88.158 | 152 | 18 | 0 | 98 | 249 | 9 | 160 | 2.25e-92 | 279 |
| MS.gene87180.t1 | MTR_3g028680 | 79.630 | 162 | 30 | 1 | 363 | 521 | 1 | 162 | 3.54e-84 | 259 |
| MS.gene87180.t1 | MTR_2g067090 | 80.503 | 159 | 28 | 1 | 366 | 521 | 99 | 257 | 4.53e-82 | 257 |
| MS.gene87180.t1 | MTR_4g133495 | 61.611 | 211 | 36 | 4 | 291 | 495 | 74 | 245 | 9.86e-73 | 233 |
| MS.gene87180.t1 | MTR_4g133340 | 61.611 | 211 | 36 | 4 | 291 | 495 | 74 | 245 | 9.86e-73 | 233 |
| MS.gene87180.t1 | MTR_1281s0010 | 95.413 | 109 | 5 | 0 | 35 | 143 | 1 | 109 | 1.16e-70 | 221 |
| MS.gene87180.t1 | MTR_0337s0060 | 55.814 | 172 | 17 | 3 | 336 | 504 | 124 | 239 | 5.80e-46 | 161 |
| MS.gene87180.t1 | MTR_2g067130 | 87.805 | 82 | 10 | 0 | 440 | 521 | 46 | 127 | 2.55e-41 | 145 |
| MS.gene87180.t1 | MTR_8g046060 | 76.042 | 96 | 14 | 2 | 1 | 95 | 91 | 178 | 1.78e-36 | 135 |
| MS.gene87180.t1 | MTR_4g008820 | 74.737 | 95 | 9 | 1 | 1 | 95 | 125 | 204 | 6.63e-35 | 139 |
| MS.gene87180.t1 | MTR_6g051425 | 24.465 | 327 | 181 | 7 | 56 | 331 | 22 | 333 | 2.28e-20 | 92.8 |
| MS.gene87180.t1 | MTR_1g013060 | 29.545 | 220 | 134 | 8 | 56 | 272 | 29 | 230 | 2.92e-13 | 69.7 |
| MS.gene87180.t1 | MTR_0402s0040 | 24.324 | 185 | 121 | 4 | 65 | 249 | 40 | 205 | 1.95e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87180.t1 | AT4G38180 | 25.161 | 310 | 180 | 6 | 50 | 324 | 72 | 364 | 3.33e-20 | 95.1 |
| MS.gene87180.t1 | AT5G28530 | 23.734 | 316 | 176 | 9 | 56 | 324 | 60 | 357 | 3.00e-16 | 82.4 |
| MS.gene87180.t1 | AT5G28530 | 23.734 | 316 | 176 | 9 | 56 | 324 | 60 | 357 | 3.44e-16 | 82.0 |
| MS.gene87180.t1 | AT5G28530 | 23.734 | 316 | 176 | 9 | 56 | 324 | 60 | 357 | 3.44e-16 | 82.0 |
| MS.gene87180.t1 | AT4G15090 | 29.798 | 198 | 118 | 6 | 328 | 518 | 536 | 719 | 2.36e-14 | 76.6 |
| MS.gene87180.t1 | AT4G15090 | 29.798 | 198 | 118 | 6 | 328 | 518 | 536 | 719 | 2.36e-14 | 76.6 |
| MS.gene87180.t1 | AT4G15090 | 29.798 | 198 | 118 | 6 | 328 | 518 | 536 | 719 | 2.36e-14 | 76.6 |
| MS.gene87180.t1 | AT4G15090 | 29.798 | 198 | 118 | 6 | 328 | 518 | 536 | 719 | 2.36e-14 | 76.6 |
| MS.gene87180.t1 | AT4G15090 | 29.798 | 198 | 118 | 6 | 328 | 518 | 536 | 719 | 2.36e-14 | 76.6 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 497 | 583 | 3.99e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 497 | 583 | 3.99e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 497 | 583 | 4.21e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 497 | 583 | 4.25e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 497 | 583 | 4.25e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 511 | 597 | 4.25e-11 | 66.2 |
| MS.gene87180.t1 | AT4G19990 | 35.052 | 97 | 53 | 2 | 338 | 434 | 440 | 526 | 4.29e-11 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 7.4:+65474759 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 7.4:-65476169 | MS.gene87180:intron |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 7.4:+65476042 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 7.4:+65474765 | None:intergenic |
| TCTGCTGTTGGCCTGTTGTT+AGG | 0.299104 | 7.4:+65477273 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 7.4:+65475281 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 7.4:+65477082 | None:intergenic |
| TTGAGGATCTTAGAGTTCTT+AGG | 0.344028 | 7.4:-65475161 | MS.gene87180:CDS |
| ATGATTGTCAAAACCAATAA+AGG | 0.372830 | 7.4:+65476156 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 7.4:-65474921 | MS.gene87180:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 7.4:-65477007 | MS.gene87180:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7.4:+65474783 | None:intergenic |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 7.4:-65475205 | MS.gene87180:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 7.4:-65476994 | MS.gene87180:CDS |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 7.4:-65474822 | MS.gene87180:CDS |
| ATATCAACTTCATCTGATAG+TGG | 0.429903 | 7.4:-65477609 | MS.gene87180:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.4:-65477069 | MS.gene87180:CDS |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 7.4:-65474888 | MS.gene87180:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.446439 | 7.4:+65477484 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 7.4:+65474791 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.4:-65477204 | MS.gene87180:CDS |
| TTCCATGATTCTTTATTGCT+AGG | 0.447614 | 7.4:+65477483 | None:intergenic |
| GTCTTTAGTGCCAACATTGA+CGG | 0.451189 | 7.4:+65475037 | None:intergenic |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 7.4:-65477152 | MS.gene87180:CDS |
| CATTCTTTGAAGACAATACC+TGG | 0.453034 | 7.4:-65475122 | MS.gene87180:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 7.4:-65477039 | MS.gene87180:CDS |
| TCAAAACATGTCGACATAAG+AGG | 0.465065 | 7.4:+65475180 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 7.4:-65477006 | MS.gene87180:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 7.4:-65477284 | MS.gene87180:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 7.4:+65475104 | None:intergenic |
| CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 7.4:+65477099 | None:intergenic |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 7.4:-65475268 | MS.gene87180:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 7.4:+65476955 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 7.4:-65474876 | MS.gene87180:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 7.4:+65475282 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 7.4:+65474853 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 7.4:-65474821 | MS.gene87180:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 7.4:-65477321 | MS.gene87180:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 7.4:-65477485 | MS.gene87180:CDS |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 7.4:+65474792 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 7.4:+65477210 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 7.4:-65477187 | MS.gene87180:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 7.4:-65477355 | MS.gene87180:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 7.4:-65477310 | MS.gene87180:CDS |
| GATCTTCAAAACTTGGGGAA+AGG | 0.512098 | 7.4:+65475288 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 7.4:-65477417 | MS.gene87180:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 7.4:-65477145 | MS.gene87180:CDS |
| AAACCACAGACGATTTATAC+AGG | 0.531016 | 7.4:-65476034 | MS.gene87180:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.531711 | 7.4:+65476011 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.539183 | 7.4:+65477485 | None:intergenic |
| GATAGTGGACATCTTAGTGT+TGG | 0.548322 | 7.4:-65477594 | MS.gene87180:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 7.4:-65477309 | MS.gene87180:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 7.4:-65475204 | MS.gene87180:CDS |
| CTGAAATCGACCGTCAATGT+TGG | 0.564487 | 7.4:-65475047 | MS.gene87180:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 7.4:-65474837 | MS.gene87180:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 7.4:+65477111 | None:intergenic |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 7.4:+65474852 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 7.4:+65475283 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 7.4:-65476991 | MS.gene87180:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 7.4:-65477000 | MS.gene87180:CDS |
| AGGATCTTAGAGTTCTTAGG+TGG | 0.586733 | 7.4:-65475158 | MS.gene87180:CDS |
| TGTAGAAAGCTGAACTGTAA+CGG | 0.597505 | 7.4:+65474980 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 7.4:-65477151 | MS.gene87180:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 7.4:+65475013 | None:intergenic |
| ACCAGTGGACTGTCTGCTGT+TGG | 0.602965 | 7.4:+65477261 | None:intergenic |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 7.4:-65477564 | MS.gene87180:CDS |
| GCCAACAGCAGACAGTCCAC+TGG | 0.611268 | 7.4:-65477262 | MS.gene87180:CDS |
| ACAGACGATTTATACAGGCC+AGG | 0.624512 | 7.4:-65476029 | MS.gene87180:CDS |
| TTCACAAACTCAATAACCAG+TGG | 0.633415 | 7.4:+65477246 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 7.4:-65474820 | MS.gene87180:CDS |
| TGGCCTGTATAAATCGTCTG+TGG | 0.652720 | 7.4:+65476031 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 7.4:+65475062 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 7.4:+65474788 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.682825 | 7.4:-65475203 | MS.gene87180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATGAGTTAAATAATT+TGG | - | chr7.4:65476470-65476489 | MS.gene87180:intron | 10.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr7.4:65475940-65475959 | MS.gene87180:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr7.4:65475206-65475225 | MS.gene87180:CDS | 20.0% |
| !! | TAACTAGATTATTCTCTATT+CGG | - | chr7.4:65475592-65475611 | MS.gene87180:intron | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr7.4:65475520-65475539 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr7.4:65475207-65475226 | MS.gene87180:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr7.4:65474920-65474939 | MS.gene87180:CDS | 20.0% |
| !!! | AATCGGATTTTAACTATAAT+TGG | - | chr7.4:65476511-65476530 | MS.gene87180:intron | 20.0% |
| !!! | ATCGGATTTTAACTATAATT+GGG | - | chr7.4:65476512-65476531 | MS.gene87180:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr7.4:65476540-65476559 | MS.gene87180:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr7.4:65476003-65476022 | MS.gene87180:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr7.4:65475003-65475022 | MS.gene87180:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7.4:65475641-65475660 | MS.gene87180:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr7.4:65476205-65476224 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr7.4:65475864-65475883 | MS.gene87180:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7.4:65476911-65476930 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7.4:65476737-65476756 | MS.gene87180:intron | 25.0% |
| ! | GAAAATGCAAAGAAAAATCT+TGG | - | chr7.4:65476426-65476445 | MS.gene87180:intron | 25.0% |
| ! | TCTTACTTATTTGAACTACA+GGG | - | chr7.4:65475786-65475805 | MS.gene87180:intron | 25.0% |
| ! | TGTAAAAAACACTAACCTAA+TGG | + | chr7.4:65475667-65475686 | None:intergenic | 25.0% |
| ! | TTCAAATGTAGATGATGAAT+CGG | - | chr7.4:65476494-65476513 | MS.gene87180:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7.4:65476911-65476930 | MS.gene87180:CDS | 25.0% |
| ! | TTCTTACTTATTTGAACTAC+AGG | - | chr7.4:65475785-65475804 | MS.gene87180:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr7.4:65476958-65476977 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr7.4:65474954-65474973 | MS.gene87180:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr7.4:65476971-65476990 | MS.gene87180:CDS | 25.0% |
| !! | TCATCTAAAAATTTTCTCGA+CGG | - | chr7.4:65477422-65477441 | MS.gene87180:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | - | chr7.4:65476160-65476179 | MS.gene87180:CDS | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | - | chr7.4:65475710-65475729 | MS.gene87180:intron | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr7.4:65477596-65477615 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr7.4:65475554-65475573 | MS.gene87180:intron | 25.0% |
| !!! | AGAAAATTTTTAGATGACTC+CGG | + | chr7.4:65477419-65477438 | None:intergenic | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr7.4:65475888-65475907 | MS.gene87180:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr7.4:65476544-65476563 | MS.gene87180:intron | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr7.4:65476378-65476397 | None:intergenic | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr7.4:65475049-65475068 | MS.gene87180:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7.4:65475649-65475668 | MS.gene87180:intron | 30.0% | |
| AATTCATCAAAAAGAGATGG+TGG | - | chr7.4:65475441-65475460 | MS.gene87180:intron | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr7.4:65475352-65475371 | MS.gene87180:intron | 30.0% | |
| ATATCAACTTCATCTGATAG+TGG | - | chr7.4:65474749-65474768 | MS.gene87180:CDS | 30.0% | |
| ATCATGATCTTCAAAACTTG+GGG | + | chr7.4:65477078-65477097 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr7.4:65475037-65475056 | MS.gene87180:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7.4:65476916-65476935 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAG+GGG | - | chr7.4:65475787-65475806 | MS.gene87180:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7.4:65476914-65476933 | MS.gene87180:CDS | 30.0% | |
| GACAATTCATCAAAAAGAGA+TGG | - | chr7.4:65475438-65475457 | MS.gene87180:intron | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | + | chr7.4:65477079-65477098 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7.4:65475645-65475664 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr7.4:65474941-65474960 | MS.gene87180:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr7.4:65475074-65475093 | MS.gene87180:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7.4:65476722-65476741 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr7.4:65476189-65476208 | MS.gene87180:intron | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr7.4:65475048-65475067 | MS.gene87180:CDS | 30.0% | |
| TAAGAACTATAGTCATTCCT+AGG | + | chr7.4:65475771-65475790 | None:intergenic | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr7.4:65475213-65475232 | MS.gene87180:CDS | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr7.4:65475852-65475871 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | + | chr7.4:65474877-65474896 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr7.4:65476876-65476895 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr7.4:65475279-65475298 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr7.4:65474878-65474897 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr7.4:65475406-65475425 | None:intergenic | 30.0% | |
| ! | ATGATGATGCTGATAATGAT+GGG | - | chr7.4:65477006-65477025 | MS.gene87180:CDS | 30.0% |
| ! | TATGATGATGCTGATAATGA+TGG | - | chr7.4:65477005-65477024 | MS.gene87180:CDS | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | - | chr7.4:65475811-65475830 | MS.gene87180:intron | 30.0% |
| ! | TTTAACCATGCTGTTTGTTT+AGG | - | chr7.4:65475810-65475829 | MS.gene87180:intron | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7.4:65477578-65477597 | None:intergenic | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr7.4:65477090-65477109 | MS.gene87180:CDS | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr7.4:65475319-65475338 | MS.gene87180:intron | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr7.4:65477258-65477277 | MS.gene87180:CDS | 30.0% |
| !!! | TAGTGTTTTTTACATCTCTC+AGG | - | chr7.4:65475673-65475692 | MS.gene87180:intron | 30.0% |
| AAACCACAGACGATTTATAC+AGG | - | chr7.4:65476324-65476343 | MS.gene87180:intron | 35.0% | |
| AAATCCCTAAACAAACAGCA+TGG | + | chr7.4:65475818-65475837 | None:intergenic | 35.0% | |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr7.4:65476319-65476338 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7.4:65476751-65476770 | MS.gene87180:intron | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | - | chr7.4:65476028-65476047 | MS.gene87180:CDS | 35.0% | |
| AGGCTAGCAATGACTAATTA+AGG | - | chr7.4:65476023-65476042 | MS.gene87180:intron | 35.0% | |
| AGGTGTGTACTTGTTTACAA+CGG | + | chr7.4:65476856-65476875 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr7.4:65475510-65475529 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr7.4:65477154-65477173 | MS.gene87180:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7.4:65476752-65476771 | MS.gene87180:intron | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr7.4:65474876-65474895 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7.4:65475289-65475308 | MS.gene87180:CDS | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | + | chr7.4:65477080-65477099 | None:intergenic | 35.0% | |
| CTTACGTAAATCGTATGCAT+TGG | - | chr7.4:65476598-65476617 | MS.gene87180:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr7.4:65476877-65476896 | MS.gene87180:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr7.4:65475138-65475157 | MS.gene87180:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr7.4:65475132-65475151 | MS.gene87180:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr7.4:65475351-65475370 | MS.gene87180:intron | 35.0% | |
| GCATACGATTTACGTAAGTT+TGG | + | chr7.4:65476596-65476615 | None:intergenic | 35.0% | |
| GGCTAGCAATGACTAATTAA+GGG | - | chr7.4:65476024-65476043 | MS.gene87180:intron | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr7.4:65475509-65475528 | None:intergenic | 35.0% | |
| TCAAAACATGTCGACATAAG+AGG | + | chr7.4:65477181-65477200 | None:intergenic | 35.0% | |
| TCACACAAGATAAAATGCCT+AGG | + | chr7.4:65475908-65475927 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | + | chr7.4:65477032-65477051 | None:intergenic | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr7.4:65475358-65475377 | MS.gene87180:intron | 35.0% | |
| TCTTTCTTTGAACTTTGGTG+CGG | + | chr7.4:65477573-65477592 | None:intergenic | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr7.4:65475137-65475156 | MS.gene87180:CDS | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | - | chr7.4:65476033-65476052 | MS.gene87180:CDS | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | + | chr7.4:65477036-65477055 | None:intergenic | 35.0% | |
| TGTAGAAAGCTGAACTGTAA+CGG | + | chr7.4:65477381-65477400 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | - | chr7.4:65477445-65477464 | MS.gene87180:CDS | 35.0% | |
| TTCACAAACTCAATAACCAG+TGG | + | chr7.4:65475115-65475134 | None:intergenic | 35.0% | |
| TTGAGGATCTTAGAGTTCTT+AGG | - | chr7.4:65477197-65477216 | MS.gene87180:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr7.4:65475171-65475190 | MS.gene87180:CDS | 35.0% |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr7.4:65477602-65477621 | None:intergenic | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr7.4:65476381-65476400 | MS.gene87180:intron | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr7.4:65475974-65475993 | MS.gene87180:intron | 35.0% |
| ! | CATTCTTTGAAGACAATACC+TGG | - | chr7.4:65477236-65477255 | MS.gene87180:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr7.4:65475250-65475269 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr7.4:65476382-65476401 | MS.gene87180:intron | 35.0% |
| ! | TACACGTTTTTATGCAGATC+CGG | - | chr7.4:65477397-65477416 | MS.gene87180:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr7.4:65476369-65476388 | MS.gene87180:intron | 35.0% |
| ! | TCTTATGTCGACATGTTTTG+AGG | - | chr7.4:65477180-65477199 | MS.gene87180:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7.4:65476681-65476700 | MS.gene87180:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr7.4:65477257-65477276 | None:intergenic | 35.0% |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr7.4:65477482-65477501 | MS.gene87180:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr7.4:65477515-65477534 | None:intergenic | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr7.4:65475562-65475581 | MS.gene87180:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr7.4:65476394-65476413 | MS.gene87180:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7.4:65476717-65476736 | None:intergenic | 40.0% | |
| AGGATCTTAGAGTTCTTAGG+TGG | - | chr7.4:65477200-65477219 | MS.gene87180:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7.4:65476928-65476947 | MS.gene87180:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr7.4:65477153-65477172 | MS.gene87180:CDS | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr7.4:65474873-65474892 | MS.gene87180:CDS | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | - | chr7.4:65477470-65477489 | MS.gene87180:CDS | 40.0% | |
| GATCTTCAAAACTTGGGGAA+AGG | + | chr7.4:65477073-65477092 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr7.4:65477299-65477318 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTGA+CGG | + | chr7.4:65477324-65477343 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7.4:65476927-65476946 | MS.gene87180:CDS | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | - | chr7.4:65477521-65477540 | MS.gene87180:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr7.4:65477155-65477174 | MS.gene87180:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr7.4:65477348-65477367 | None:intergenic | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | + | chr7.4:65477509-65477528 | None:intergenic | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | - | chr7.4:65475834-65475853 | MS.gene87180:intron | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr7.4:65475751-65475770 | MS.gene87180:intron | 40.0% |
| ! | CATCAAAAAGAGATGGTGGT+TGG | - | chr7.4:65475445-65475464 | MS.gene87180:intron | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | - | chr7.4:65475389-65475408 | MS.gene87180:intron | 40.0% |
| ! | GCCTTCCAATGTTGATGTTT+TGG | - | chr7.4:65477028-65477047 | MS.gene87180:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr7.4:65476633-65476652 | MS.gene87180:intron | 40.0% |
| !! | GATAGTGGACATCTTAGTGT+TGG | - | chr7.4:65474764-65474783 | MS.gene87180:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr7.4:65476611-65476630 | MS.gene87180:intron | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr7.4:65476265-65476284 | MS.gene87180:intron | 40.0% |
| !!! | CATCGCAAGAGTGTTTTGTT+TGG | - | chr7.4:65476222-65476241 | MS.gene87180:intron | 40.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr7.4:65476350-65476369 | None:intergenic | 45.0% | |
| ACAGACGATTTATACAGGCC+AGG | - | chr7.4:65476329-65476348 | MS.gene87180:intron | 45.0% | |
| ATCCCAACAATCAGCTGATG+CGG | - | chr7.4:65476829-65476848 | MS.gene87180:CDS | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr7.4:65476390-65476409 | None:intergenic | 45.0% | |
| CTGAAATCGACCGTCAATGT+TGG | - | chr7.4:65477311-65477330 | MS.gene87180:CDS | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr7.4:65475142-65475161 | MS.gene87180:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr7.4:65475364-65475383 | MS.gene87180:intron | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7.4:65476770-65476789 | MS.gene87180:intron | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | - | chr7.4:65477451-65477470 | MS.gene87180:CDS | 45.0% | |
| TGGCCTGTATAAATCGTCTG+TGG | + | chr7.4:65476330-65476349 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr7.4:65475151-65475170 | None:intergenic | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | + | chr7.4:65477508-65477527 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | - | chr7.4:65477537-65477556 | MS.gene87180:CDS | 45.0% |
| ! | TCATGCTGAGTTGGACTTCA+AGG | - | chr7.4:65476779-65476798 | MS.gene87180:intron | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr7.4:65477569-65477588 | None:intergenic | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | - | chr7.4:65477538-65477557 | MS.gene87180:CDS | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr7.4:65477570-65477589 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7.4:65475154-65475173 | MS.gene87180:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr7.4:65476610-65476629 | MS.gene87180:intron | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr7.4:65474794-65474813 | MS.gene87180:CDS | 45.0% |
| CTAAGGTAACGCGAATGCTC+TGG | + | chr7.4:65475262-65475281 | None:intergenic | 50.0% | |
| GAAGGCCTACCTCAGACTTT+AGG | - | chr7.4:65476562-65476581 | MS.gene87180:intron | 50.0% | |
| GACAAGCCACCTAAAGTCTG+AGG | + | chr7.4:65476574-65476593 | None:intergenic | 50.0% | |
| GACCGCATCAGCTGATTGTT+GGG | + | chr7.4:65476834-65476853 | None:intergenic | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr7.4:65475367-65475386 | MS.gene87180:intron | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr7.4:65476570-65476589 | None:intergenic | 50.0% |
| ! | GCTGTTGGTGAAACATCTGC+TGG | - | chr7.4:65477536-65477555 | MS.gene87180:CDS | 50.0% |
| ! | TCTGCTGTTGGCCTGTTGTT+AGG | + | chr7.4:65475088-65475107 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr7.4:65476401-65476420 | MS.gene87180:intron | 50.0% |
| CTCGACGGTGTTCTTGAAGC+TGG | - | chr7.4:65477437-65477456 | MS.gene87180:CDS | 55.0% | |
| GGACCGCATCAGCTGATTGT+TGG | + | chr7.4:65476835-65476854 | None:intergenic | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | - | chr7.4:65476565-65476584 | MS.gene87180:intron | 55.0% | |
| !! | ACCAGTGGACTGTCTGCTGT+TGG | + | chr7.4:65475100-65475119 | None:intergenic | 55.0% |
| GCCAACAGCAGACAGTCCAC+TGG | - | chr7.4:65475096-65475115 | MS.gene87180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 65474740 | 65477640 | 65474740 | ID=MS.gene87180 |
| chr7.4 | mRNA | 65474740 | 65477640 | 65474740 | ID=MS.gene87180.t1;Parent=MS.gene87180 |
| chr7.4 | exon | 65476815 | 65477640 | 65476815 | ID=MS.gene87180.t1.exon1;Parent=MS.gene87180.t1 |
| chr7.4 | CDS | 65476815 | 65477640 | 65476815 | ID=cds.MS.gene87180.t1;Parent=MS.gene87180.t1 |
| chr7.4 | exon | 65476026 | 65476181 | 65476026 | ID=MS.gene87180.t1.exon2;Parent=MS.gene87180.t1 |
| chr7.4 | CDS | 65476026 | 65476181 | 65476026 | ID=cds.MS.gene87180.t1;Parent=MS.gene87180.t1 |
| chr7.4 | exon | 65474740 | 65475323 | 65474740 | ID=MS.gene87180.t1.exon3;Parent=MS.gene87180.t1 |
| chr7.4 | CDS | 65474740 | 65475323 | 65474740 | ID=cds.MS.gene87180.t1;Parent=MS.gene87180.t1 |
| Gene Sequence |
| Protein sequence |
