Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87221.t1 | RYR21771.1 | 61.2 | 905 | 240 | 11 | 62 | 900 | 3 | 862 | 3.70E-268 | 934.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87221.t1 | Q6H7U2 | 30.6 | 447 | 251 | 15 | 66 | 484 | 11 | 426 | 1.2e-33 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87221.t1 | A0A445A5N9 | 61.2 | 905 | 240 | 11 | 62 | 900 | 3 | 862 | 2.7e-268 | 934.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87221.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87221.t1 | MTR_4g046697 | 96.061 | 457 | 16 | 2 | 43 | 499 | 7 | 461 | 0.0 | 900 |
| MS.gene87221.t1 | MTR_4g046697 | 96.145 | 441 | 15 | 2 | 59 | 499 | 1 | 439 | 0.0 | 871 |
| MS.gene87221.t1 | MTR_4g046697 | 95.980 | 398 | 14 | 2 | 102 | 499 | 19 | 414 | 0.0 | 774 |
| MS.gene87221.t1 | MTR_4g046707 | 96.389 | 360 | 11 | 1 | 541 | 900 | 1 | 358 | 0.0 | 711 |
| MS.gene87221.t1 | MTR_4g046697 | 97.414 | 348 | 9 | 0 | 59 | 406 | 1 | 348 | 0.0 | 699 |
| MS.gene87221.t1 | MTR_4g046697 | 97.377 | 305 | 8 | 0 | 102 | 406 | 19 | 323 | 0.0 | 603 |
| MS.gene87221.t1 | MTR_4g046697 | 94.366 | 284 | 14 | 2 | 216 | 499 | 34 | 315 | 0.0 | 541 |
| MS.gene87221.t1 | MTR_6g055230 | 48.443 | 289 | 108 | 3 | 611 | 895 | 46 | 297 | 1.07e-74 | 247 |
| MS.gene87221.t1 | MTR_4g046663 | 69.737 | 76 | 23 | 0 | 804 | 879 | 1 | 76 | 2.79e-30 | 115 |
| MS.gene87221.t1 | MTR_1g101540 | 29.694 | 229 | 140 | 5 | 640 | 849 | 93 | 319 | 2.49e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87221.t1 | AT1G05270 | 58.777 | 376 | 134 | 4 | 541 | 900 | 1 | 371 | 2.49e-149 | 445 |
| MS.gene87221.t1 | AT2G32340 | 56.977 | 344 | 131 | 5 | 570 | 897 | 13 | 355 | 1.05e-126 | 386 |
| MS.gene87221.t1 | AT2G32340 | 62.500 | 248 | 85 | 4 | 576 | 821 | 38 | 279 | 7.12e-98 | 308 |
| MS.gene87221.t1 | AT3G21810 | 37.329 | 292 | 168 | 4 | 66 | 342 | 7 | 298 | 2.46e-43 | 164 |
| MS.gene87221.t1 | AT3G21810 | 36.287 | 237 | 148 | 1 | 109 | 342 | 38 | 274 | 2.99e-31 | 127 |
| MS.gene87221.t1 | AT5G52030 | 30.738 | 244 | 133 | 7 | 640 | 849 | 94 | 335 | 3.44e-20 | 94.4 |
| MS.gene87221.t1 | AT5G52030 | 34.266 | 143 | 88 | 4 | 711 | 849 | 51 | 191 | 3.59e-15 | 77.0 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGTTTGAAGTACTTTA+TGG | 0.122060 | 4.4:-54122224 | MS.gene87221:CDS |
| GATACTTCAATTCCATTATC+AGG | 0.154544 | 4.4:+54128835 | None:intergenic |
| TCCAATCACCAAACATAATT+TGG | 0.183533 | 4.4:-54129721 | MS.gene87221:CDS |
| AGTAAGCTTGAGGTCTTTCC+TGG | 0.209500 | 4.4:-54122040 | MS.gene87221:CDS |
| TAAAGAGTTTCCAACTTTAA+TGG | 0.223585 | 4.4:-54120962 | MS.gene87221:CDS |
| GTTCCTGAATTCTAGAATTA+AGG | 0.245226 | 4.4:+54130229 | None:intergenic |
| TCTGTAGGTGTTGGCGTGGC+TGG | 0.248845 | 4.4:-54120083 | MS.gene87221:CDS |
| GCGTGTTGTTGCTGAGAAAA+AGG | 0.263018 | 4.4:+54134948 | None:intergenic |
| TAGCCTTAATTCTAGAATTC+AGG | 0.264978 | 4.4:-54130232 | MS.gene87221:CDS |
| TCGAATGCACAATCAGAAAT+TGG | 0.265489 | 4.4:-54130010 | MS.gene87221:CDS |
| TGGTGTTTGTGATGTTTATT+TGG | 0.269311 | 4.4:-54125427 | MS.gene87221:CDS |
| AAGATAGATGCCCGATATTA+TGG | 0.284970 | 4.4:+54120055 | None:intergenic |
| TTCTCAGACATTTCTAGAAT+TGG | 0.297684 | 4.4:-54129804 | MS.gene87221:CDS |
| GCGGATCTCCTTGCAGAAAA+AGG | 0.300826 | 4.4:-54129689 | MS.gene87221:CDS |
| TGATAATGGAATGGCATTAC+AGG | 0.320982 | 4.4:-54128402 | MS.gene87221:CDS |
| AAGAGGATGGGGAGTATAAA+AGG | 0.327357 | 4.4:-54130188 | MS.gene87221:intron |
| TTGCTGCGGGGAATCAAATC+TGG | 0.330633 | 4.4:+54128353 | None:intergenic |
| TACAAGGAATAAAGAAGAAT+TGG | 0.330803 | 4.4:-54120382 | MS.gene87221:CDS |
| GATGCGCGTCCATTGGAGTT+AGG | 0.335868 | 4.4:+54125721 | None:intergenic |
| GGCTGGGGTTGCCATAATAT+CGG | 0.343037 | 4.4:-54120066 | MS.gene87221:CDS |
| CTGTAGGTGTTGGCGTGGCT+GGG | 0.344238 | 4.4:-54120082 | MS.gene87221:CDS |
| CATTGCAGAGATAGCTGGTT+TGG | 0.349792 | 4.4:+54120118 | None:intergenic |
| TTGGAGTTAGGGTGCGGCGG+AGG | 0.358131 | 4.4:+54125733 | None:intergenic |
| TGTGAGGAGGCCCCTGATAA+TGG | 0.359411 | 4.4:-54128847 | MS.gene87221:CDS |
| GCAGGAAAGAGAGACTATTT+AGG | 0.365279 | 4.4:-54132377 | MS.gene87221:intron |
| TTCTGTCCTTGAAGTTTCAT+TGG | 0.368375 | 4.4:+54128427 | None:intergenic |
| GGAGGGTGGTTGAGAAGAAT+TGG | 0.368594 | 4.4:+54125751 | None:intergenic |
| TAGAAATACTCTTGAGGATC+AGG | 0.371223 | 4.4:-54130779 | MS.gene87221:intron |
| TGAAAATTCACCATTATAGT+TGG | 0.375369 | 4.4:+54134761 | None:intergenic |
| GAAAACACAAGAAAGGAATA+TGG | 0.376155 | 4.4:-54128792 | MS.gene87221:CDS |
| ACTTTGGTACAAGACAAAAT+TGG | 0.377559 | 4.4:-54121194 | MS.gene87221:CDS |
| TCACATCCACGATCTCAAAA+TGG | 0.378158 | 4.4:-54125649 | MS.gene87221:CDS |
| GCTTACCCTTCAAAATCTTA+AGG | 0.379693 | 4.4:-54123207 | MS.gene87221:intron |
| GTTTGTGATGTTTATTTGGT+TGG | 0.379917 | 4.4:-54125423 | MS.gene87221:CDS |
| AGTGGCCAAAGTGATATTTC+TGG | 0.381454 | 4.4:-54130868 | MS.gene87221:CDS |
| GGTTGACGGCACTTCAATCC+TGG | 0.385159 | 4.4:+54128511 | None:intergenic |
| GAACTTACTGATCTCGTTCA+TGG | 0.387801 | 4.4:+54120929 | None:intergenic |
| TCAAGGACAGAAAATGATAA+TGG | 0.388686 | 4.4:-54128416 | MS.gene87221:CDS |
| TCAATCATTTCTCTCATAGT+AGG | 0.391823 | 4.4:+54122266 | None:intergenic |
| GGGGTGGTGGAGGAGGAATC+TGG | 0.395928 | 4.4:+54125696 | None:intergenic |
| AGGAAAGACCTCAAGCTTAC+TGG | 0.396406 | 4.4:+54122042 | None:intergenic |
| GCGTCGTCTGCTCCTGCATC+AGG | 0.405231 | 4.4:+54125549 | None:intergenic |
| AGTATCTAGGCACCAAGATC+TGG | 0.407157 | 4.4:-54128818 | MS.gene87221:CDS |
| TATGAAGAAGCAATTAAGTA+TGG | 0.408284 | 4.4:-54121998 | MS.gene87221:CDS |
| TCCAAATTATGTTTGGTGAT+TGG | 0.408302 | 4.4:+54129720 | None:intergenic |
| GTGGTGGAGGAGGAATCTGG+TGG | 0.411485 | 4.4:+54125699 | None:intergenic |
| GAGGGTGGTTGAGAAGAATT+GGG | 0.413398 | 4.4:+54125752 | None:intergenic |
| ATGAATGAAAGGCGCGAGTT+GGG | 0.425930 | 4.4:+54125803 | None:intergenic |
| AAAATGCATCCAACCTGTAC+AGG | 0.427268 | 4.4:+54121950 | None:intergenic |
| AAGTCTTCGACGGCGACGGC+GGG | 0.444515 | 4.4:+54125675 | None:intergenic |
| GTCTTCGACGGCGACGGCGG+GGG | 0.448870 | 4.4:+54125677 | None:intergenic |
| TCTGGTGGATGCGCGTCCAT+TGG | 0.449204 | 4.4:+54125714 | None:intergenic |
| CACGACTCGAGCACAATTCA+AGG | 0.450223 | 4.4:+54123237 | None:intergenic |
| CAGAAGACATAGGAGAAAAC+AGG | 0.454769 | 4.4:-54130896 | MS.gene87221:CDS |
| ATTGCAGAGATAGCTGGTTT+GGG | 0.457276 | 4.4:+54120119 | None:intergenic |
| CATGTGCAAAAGAACAGTTC+TGG | 0.459711 | 4.4:+54134811 | None:intergenic |
| TCGGATCGATGATCATTCTT+CGG | 0.462677 | 4.4:-54125604 | MS.gene87221:CDS |
| TGGAGTTAGGGTGCGGCGGA+GGG | 0.462807 | 4.4:+54125734 | None:intergenic |
| TCTCGAGCCGGTGAATATCT+TGG | 0.463968 | 4.4:+54132308 | None:intergenic |
| GTTGTGTTCCAAATTATGTT+TGG | 0.469670 | 4.4:+54129713 | None:intergenic |
| TTTAGGTAATAATGACTTGA+GGG | 0.469756 | 4.4:-54132360 | MS.gene87221:CDS |
| ACAACACGCTCGGCGCAACT+TGG | 0.471805 | 4.4:-54134934 | MS.gene87221:CDS |
| TAACAACATTCATTCAGAAA+AGG | 0.473891 | 4.4:-54128761 | MS.gene87221:intron |
| GTAAGCAATGGTGAGAATAC+TGG | 0.475904 | 4.4:-54129750 | MS.gene87221:CDS |
| TTATGGCTGGTTCCTTGCCA+AGG | 0.479240 | 4.4:-54122207 | MS.gene87221:intron |
| ATAATGGAATTGAAGTATCT+AGG | 0.479355 | 4.4:-54128831 | MS.gene87221:CDS |
| GAGATAGCTGGTTTGGGAGA+TGG | 0.479500 | 4.4:+54120125 | None:intergenic |
| AGATCAGTTGTGGCTGTTGT+TGG | 0.480034 | 4.4:-54120416 | MS.gene87221:CDS |
| ATGCGCGTCCATTGGAGTTA+GGG | 0.482953 | 4.4:+54125722 | None:intergenic |
| TCGTCTGCTCCTCCTGATGC+AGG | 0.483156 | 4.4:-54125561 | MS.gene87221:CDS |
| AAAGTACTTCAAACATGTTA+CGG | 0.487465 | 4.4:+54122228 | None:intergenic |
| ACTCTCATTGCAGAGATAGC+TGG | 0.489816 | 4.4:+54120113 | None:intergenic |
| CTGATACCAATGAAACTTCA+AGG | 0.492224 | 4.4:-54128433 | MS.gene87221:CDS |
| GTTATTAAGATCATCAGAGC+TGG | 0.494439 | 4.4:+54121138 | None:intergenic |
| CGACCTCTTGCCTCTCGAGC+CGG | 0.496526 | 4.4:+54132296 | None:intergenic |
| TCTTGTGAATCTTCTGCTGA+AGG | 0.497214 | 4.4:-54125450 | MS.gene87221:CDS |
| ATACTTCAATTCCATTATCA+GGG | 0.497610 | 4.4:+54128836 | None:intergenic |
| GCTTCTTCAGATGAAGGAGA+TGG | 0.498793 | 4.4:-54121025 | MS.gene87221:intron |
| TGCTGCGGGGAATCAAATCT+GGG | 0.499304 | 4.4:+54128354 | None:intergenic |
| TTCTAGAATTCAGGAACTTG+AGG | 0.500849 | 4.4:-54130223 | MS.gene87221:CDS |
| AGTTAGGGTGCGGCGGAGGG+TGG | 0.502340 | 4.4:+54125737 | None:intergenic |
| ACAAGGGTCTCCATTAAAGT+TGG | 0.503321 | 4.4:+54120952 | None:intergenic |
| AGTCTTCGACGGCGACGGCG+GGG | 0.505145 | 4.4:+54125676 | None:intergenic |
| CAGGTCCGACTTCAAAGGTT+CGG | 0.509285 | 4.4:-54129837 | MS.gene87221:CDS |
| GGCAGCAGCAGCAGCCCATG+TGG | 0.509296 | 4.4:-54128180 | MS.gene87221:CDS |
| ACTTCAATCCTGGATTCCTT+CGG | 0.509539 | 4.4:+54128521 | None:intergenic |
| GTTACCGTTGTGTTTATCAT+CGG | 0.510198 | 4.4:-54136674 | MS.gene87221:CDS |
| AATTATGTTTGGTGATTGGA+GGG | 0.510840 | 4.4:+54129724 | None:intergenic |
| TGTTTGAAGTACTTTATGGC+TGG | 0.512196 | 4.4:-54122220 | MS.gene87221:CDS |
| AGCGTTGATATTGTAAGCAA+TGG | 0.513750 | 4.4:-54129762 | MS.gene87221:CDS |
| AAGCAATTAAGTATGGTGGC+AGG | 0.514395 | 4.4:-54121991 | MS.gene87221:CDS |
| TGTAGGTGTTGGCGTGGCTG+GGG | 0.514441 | 4.4:-54120081 | MS.gene87221:CDS |
| GTCCGCCACATTATTAAAAG+TGG | 0.514526 | 4.4:-54120450 | MS.gene87221:CDS |
| GTAACCACCTTCGAGGTAGC+TGG | 0.514586 | 4.4:+54136692 | None:intergenic |
| AAATTATGTTTGGTGATTGG+AGG | 0.515054 | 4.4:+54129723 | None:intergenic |
| AACTTCCAGAAATATCACTT+TGG | 0.517782 | 4.4:+54130863 | None:intergenic |
| CTCTGATGATCTTAATAACA+TGG | 0.517890 | 4.4:-54121134 | MS.gene87221:intron |
| GCTGGGGTTGCCATAATATC+GGG | 0.522863 | 4.4:-54120065 | MS.gene87221:CDS |
| ATATAGTCCACTGAGGTCTC+CGG | 0.522959 | 4.4:-54131843 | MS.gene87221:CDS |
| GTCGTTACATCTGTAGGTGT+TGG | 0.523250 | 4.4:-54120092 | MS.gene87221:CDS |
| AACCTGCGAATAATTGCTGC+GGG | 0.524739 | 4.4:+54128340 | None:intergenic |
| GTTGATATTGAGCATGATAA+CGG | 0.525710 | 4.4:-54128458 | MS.gene87221:CDS |
| TGAGGTCTCCGGAGAAAAGA+AGG | 0.526705 | 4.4:-54131832 | MS.gene87221:intron |
| CTCAGTTAAACAAAGAGGAT+GGG | 0.527683 | 4.4:-54130200 | MS.gene87221:CDS |
| ATCACCTCCAAGATATTCAC+CGG | 0.528176 | 4.4:-54132315 | MS.gene87221:CDS |
| TGGAATGGCATTACAGGTGA+AGG | 0.528941 | 4.4:-54128396 | MS.gene87221:CDS |
| TGAGGGATAAACTTGACAAA+AGG | 0.534124 | 4.4:-54132343 | MS.gene87221:CDS |
| ACCTTCGAGGTAGCTGGCAG+CGG | 0.535764 | 4.4:+54136698 | None:intergenic |
| ATATACAGCCGAAGGAATCC+AGG | 0.536998 | 4.4:-54128529 | MS.gene87221:intron |
| TTCTAGAATTGGTGCTGATG+AGG | 0.537743 | 4.4:-54129793 | MS.gene87221:CDS |
| GCTCAGTTAAACAAAGAGGA+TGG | 0.540853 | 4.4:-54130201 | MS.gene87221:CDS |
| TCCTGGGTCTGAGTTTCGTG+TGG | 0.541592 | 4.4:-54122023 | MS.gene87221:CDS |
| CATGGAGTAAGATGCCACTT+TGG | 0.542574 | 4.4:-54121210 | MS.gene87221:CDS |
| ACTTGGTGACCGCCCTGTAC+AGG | 0.542788 | 4.4:-54121963 | MS.gene87221:intron |
| TCCCCGCAGCAATTATTCGC+AGG | 0.545017 | 4.4:-54128342 | MS.gene87221:intron |
| TCAACTTTGAACAATTCGAT+CGG | 0.545191 | 4.4:+54134904 | None:intergenic |
| GGAGTTGAGTGCGAGTGAGG+TGG | 0.547101 | 4.4:+54125826 | None:intergenic |
| ACCGTTGTGTTTATCATCGG+AGG | 0.549225 | 4.4:-54136671 | MS.gene87221:intron |
| GAATGTTCACATACCATGAC+AGG | 0.549536 | 4.4:+54120353 | None:intergenic |
| TGAATGAAAGGCGCGAGTTG+GGG | 0.550550 | 4.4:+54125804 | None:intergenic |
| AATGAAGTCTTCGACGGCGA+CGG | 0.550908 | 4.4:+54125671 | None:intergenic |
| GATGAATGAAAGGCGCGAGT+TGG | 0.551408 | 4.4:+54125802 | None:intergenic |
| AGAGGTCGGCAGACCATTCG+CGG | 0.553269 | 4.4:-54132281 | MS.gene87221:intron |
| CCGCCGCACCCTAACTCCAA+TGG | 0.554812 | 4.4:-54125730 | MS.gene87221:CDS |
| GAATTGGAAGCAACCTGTCA+TGG | 0.555197 | 4.4:-54120366 | MS.gene87221:intron |
| GCTTATCCGATAGCATGGTT+CGG | 0.555726 | 4.4:-54125623 | MS.gene87221:CDS |
| TTATGCGCGCTTTATCAGAA+TGG | 0.556261 | 4.4:-54134846 | MS.gene87221:CDS |
| CTTCTTGAACACTCTCATCC+AGG | 0.556266 | 4.4:+54130259 | None:intergenic |
| ATCTTGTGTCTAACCGCGAA+TGG | 0.556846 | 4.4:+54132268 | None:intergenic |
| ACATTCCTCGATAACTCCTC+AGG | 0.557097 | 4.4:+54125483 | None:intergenic |
| AGACGAAGCTGCTGCATCGA+CGG | 0.557145 | 4.4:+54125578 | None:intergenic |
| CGAGCCGGTGAATATCTTGG+AGG | 0.558434 | 4.4:+54132311 | None:intergenic |
| CTGGAAGGAAAACACAAGAA+AGG | 0.561449 | 4.4:-54128799 | MS.gene87221:CDS |
| GTAAGCTTGAGGTCTTTCCT+GGG | 0.562244 | 4.4:-54122039 | MS.gene87221:CDS |
| GACAGAAAATGATAATGGAA+TGG | 0.562419 | 4.4:-54128411 | MS.gene87221:CDS |
| CTAGTTAAACCATGTCCACA+TGG | 0.563579 | 4.4:+54128165 | None:intergenic |
| ATGAGAGTCGTTACATCTGT+AGG | 0.564166 | 4.4:-54120098 | MS.gene87221:CDS |
| AGTTGTGGCTGTTGTTGGAA+AGG | 0.565891 | 4.4:-54120411 | MS.gene87221:CDS |
| AGCAGCAGCCCATGTGGACA+TGG | 0.566741 | 4.4:-54128174 | MS.gene87221:intron |
| GAAGTCTTCGACGGCGACGG+CGG | 0.566753 | 4.4:+54125674 | None:intergenic |
| GTTGTGGCTGTTGTTGGAAA+GGG | 0.566868 | 4.4:-54120410 | MS.gene87221:CDS |
| AAGATATTCACCGGCTCGAG+AGG | 0.567135 | 4.4:-54132306 | MS.gene87221:CDS |
| TAACTTAATGTGCAGTATGA+GGG | 0.569651 | 4.4:-54128242 | MS.gene87221:intron |
| GATCACAGGTCCGACTTCAA+AGG | 0.571245 | 4.4:-54129842 | MS.gene87221:CDS |
| GACAACATGAGCTGCCATGC+TGG | 0.571700 | 4.4:+54128490 | None:intergenic |
| CGTCCATTGGAGTTAGGGTG+CGG | 0.575699 | 4.4:+54125727 | None:intergenic |
| AGCAATTAAGTATGGTGGCA+GGG | 0.576248 | 4.4:-54121990 | MS.gene87221:CDS |
| CGACGCTGTCGTCGCCGCGG+TGG | 0.577667 | 4.4:-54125532 | MS.gene87221:CDS |
| TTGAGATGGTGATGAATGAA+AGG | 0.577954 | 4.4:+54125792 | None:intergenic |
| TGTGAATCTTCTGCTGAAGG+TGG | 0.578487 | 4.4:-54125447 | MS.gene87221:CDS |
| GGATGAGAGTGTTCAAGAAG+TGG | 0.580126 | 4.4:-54130256 | MS.gene87221:CDS |
| ACTGATCTCGTTCATGGACA+AGG | 0.581009 | 4.4:+54120935 | None:intergenic |
| TCAGTTAAACAAAGAGGATG+GGG | 0.582580 | 4.4:-54130199 | MS.gene87221:CDS |
| GAACCGAAAATCCCAACTAT+CGG | 0.583849 | 4.4:-54130621 | MS.gene87221:intron |
| CACAACGGTAACCACCTTCG+AGG | 0.583878 | 4.4:+54136685 | None:intergenic |
| GCCACACGAAACTCAGACCC+AGG | 0.583957 | 4.4:+54122022 | None:intergenic |
| GCCGCTGCCAGCTACCTCGA+AGG | 0.584623 | 4.4:-54136699 | MS.gene87221:CDS |
| ATCGATCCGAACCATGCTAT+CGG | 0.589640 | 4.4:+54125617 | None:intergenic |
| TGAGCTGCCATGCTGGTTGA+CGG | 0.590544 | 4.4:+54128497 | None:intergenic |
| TCGTCTGCTCCTGCATCAGG+AGG | 0.591008 | 4.4:+54125552 | None:intergenic |
| GTTGGAAAGGGACATCTACA+AGG | 0.592838 | 4.4:-54120398 | MS.gene87221:CDS |
| TATGGTGGCAGGGTGATACT+TGG | 0.597732 | 4.4:-54121980 | MS.gene87221:CDS |
| ATTTAGGTAATAATGACTTG+AGG | 0.602441 | 4.4:-54132361 | MS.gene87221:CDS |
| TGGAACTGCTCATGTTTCTG+AGG | 0.605070 | 4.4:-54125403 | MS.gene87221:intron |
| GATCTCCGAACCTTTGAAGT+CGG | 0.606184 | 4.4:+54129832 | None:intergenic |
| GCATGCAGAACGAGATTCTG+TGG | 0.606610 | 4.4:-54129664 | MS.gene87221:CDS |
| AAATGCATCCAACCTGTACA+GGG | 0.606824 | 4.4:+54121951 | None:intergenic |
| CATAGAAACATGCCTTGGCA+AGG | 0.609074 | 4.4:+54122195 | None:intergenic |
| GGAGAGCTTATCCGATAGCA+TGG | 0.611123 | 4.4:-54125628 | MS.gene87221:CDS |
| TCAGTTGAAACAGCAAGAAG+CGG | 0.613051 | 4.4:-54128916 | MS.gene87221:CDS |
| TTATTAAGATCATCAGAGCT+GGG | 0.614482 | 4.4:+54121139 | None:intergenic |
| ACAGATTGCCAGTAAGCTTG+AGG | 0.615590 | 4.4:-54122050 | MS.gene87221:intron |
| TACTTCAATTCCATTATCAG+GGG | 0.616698 | 4.4:+54128837 | None:intergenic |
| CGCTTCCTGAGGAGTTATCG+AGG | 0.618132 | 4.4:-54125488 | MS.gene87221:CDS |
| AGATTACATTGAAGAGAACA+TGG | 0.619490 | 4.4:-54121228 | MS.gene87221:CDS |
| AAGAGTATTTCTAGAACCAG+AGG | 0.619782 | 4.4:+54130789 | None:intergenic |
| AGGGTGGTTGAGAAGAATTG+GGG | 0.623289 | 4.4:+54125753 | None:intergenic |
| GAATGAAAGGCGCGAGTTGG+GGG | 0.623865 | 4.4:+54125805 | None:intergenic |
| GCTGCCAGCTACCTCGAAGG+TGG | 0.624077 | 4.4:-54136696 | MS.gene87221:CDS |
| GGAATGGCATTACAGGTGAA+GGG | 0.625351 | 4.4:-54128395 | MS.gene87221:CDS |
| TGAAGTGCCGTCAACCAGCA+TGG | 0.625663 | 4.4:-54128504 | MS.gene87221:CDS |
| TGGTTCTAGAAATACTCTTG+AGG | 0.626257 | 4.4:-54130785 | MS.gene87221:CDS |
| GAAGAAGCAATTAAGTATGG+TGG | 0.634407 | 4.4:-54121995 | MS.gene87221:CDS |
| GGCAGCTCATGTTGTCGATG+AGG | 0.635035 | 4.4:-54128483 | MS.gene87221:CDS |
| TGTCAGTTTACTGAAACCAG+AGG | 0.635790 | 4.4:-54123386 | MS.gene87221:intron |
| TGTGGATGGTCTTGATGAAG+AGG | 0.636361 | 4.4:-54128201 | MS.gene87221:CDS |
| GATGTGAATGAAGTCTTCGA+CGG | 0.639985 | 4.4:+54125665 | None:intergenic |
| TGAGGCTCAGTTAAACAAAG+AGG | 0.640733 | 4.4:-54130205 | MS.gene87221:CDS |
| TTTCTCAGCAACAACACGCT+CGG | 0.644189 | 4.4:-54134944 | MS.gene87221:CDS |
| AGTTGCAAGATGAACTGAAG+AGG | 0.645881 | 4.4:-54129987 | MS.gene87221:intron |
| AAGTGAGAGCAGATCAGTTG+TGG | 0.647491 | 4.4:-54120426 | MS.gene87221:CDS |
| TAACCTGCGAATAATTGCTG+CGG | 0.648704 | 4.4:+54128339 | None:intergenic |
| CTGATCTCGTTCATGGACAA+GGG | 0.650040 | 4.4:+54120936 | None:intergenic |
| AACGAGAATGTGGATGTGGA+TGG | 0.650385 | 4.4:-54128215 | MS.gene87221:CDS |
| ATCGATTGACAAGAGTTGTG+AGG | 0.651602 | 4.4:-54128863 | MS.gene87221:CDS |
| TCACCGGCTCGAGAGGCAAG+AGG | 0.653046 | 4.4:-54132299 | MS.gene87221:CDS |
| CATAATTTGGAACACAACGG+CGG | 0.658852 | 4.4:-54129708 | MS.gene87221:CDS |
| CGGCTCGAGAGGCAAGAGGT+CGG | 0.660465 | 4.4:-54132295 | MS.gene87221:CDS |
| TACATCTGTAGGTGTTGGCG+TGG | 0.660996 | 4.4:-54120087 | MS.gene87221:CDS |
| AAACATAATTTGGAACACAA+CGG | 0.668028 | 4.4:-54129711 | MS.gene87221:CDS |
| AAACAGCAAGAAGCGGAAAG+CGG | 0.668812 | 4.4:-54128909 | MS.gene87221:CDS |
| GGTGCAGTGACAGAAGACAT+AGG | 0.669837 | 4.4:-54130906 | MS.gene87221:intron |
| TCTAGGCACCAAGATCTGGA+AGG | 0.672774 | 4.4:-54128814 | MS.gene87221:CDS |
| AGGAGAAAACAGGATATCAG+TGG | 0.680364 | 4.4:-54130886 | MS.gene87221:CDS |
| ACAGAAAGTTACGCTTCCTG+AGG | 0.681688 | 4.4:-54125499 | MS.gene87221:CDS |
| AGACGACGCTGTCGTCGCCG+CGG | 0.685592 | 4.4:-54125535 | MS.gene87221:CDS |
| TAGTTAAACCATGTCCACAT+GGG | 0.685652 | 4.4:+54128166 | None:intergenic |
| CCATTGGAGTTAGGGTGCGG+CGG | 0.686338 | 4.4:+54125730 | None:intergenic |
| GATTGACAAGAGTTGTGAGG+AGG | 0.689653 | 4.4:-54128860 | MS.gene87221:CDS |
| GCTGCGGGGAATCAAATCTG+GGG | 0.713601 | 4.4:+54128355 | None:intergenic |
| GGGTGGTTGAGAAGAATTGG+GGG | 0.720249 | 4.4:+54125754 | None:intergenic |
| TGCATCCAACCTGTACAGGG+CGG | 0.738963 | 4.4:+54121954 | None:intergenic |
| TCTGTGGAAGAGTTACAACA+AGG | 0.739554 | 4.4:-54129648 | MS.gene87221:intron |
| ACCTCCGATGATAAACACAA+CGG | 0.740253 | 4.4:+54136670 | None:intergenic |
| ACCTGCGAATAATTGCTGCG+GGG | 0.744720 | 4.4:+54128341 | None:intergenic |
| TTGCAGAATATAGTCCACTG+AGG | 0.772392 | 4.4:-54131850 | MS.gene87221:intron |
| CTGTTGATCTGAATCCACCG+CGG | 0.824627 | 4.4:+54125518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 54120040 | 54136739 | 54120040 | ID=MS.gene87221 |
| chr4.4 | mRNA | 54120040 | 54136739 | 54120040 | ID=MS.gene87221.t1;Parent=MS.gene87221 |
| chr4.4 | exon | 54136672 | 54136739 | 54136672 | ID=MS.gene87221.t1.exon1;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54136672 | 54136739 | 54136672 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54136538 | 54136560 | 54136538 | ID=MS.gene87221.t1.exon2;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54136538 | 54136560 | 54136538 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54134772 | 54134984 | 54134772 | ID=MS.gene87221.t1.exon3;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54134772 | 54134984 | 54134772 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54132282 | 54132395 | 54132282 | ID=MS.gene87221.t1.exon4;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54132282 | 54132395 | 54132282 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54131833 | 54131866 | 54131833 | ID=MS.gene87221.t1.exon5;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54131833 | 54131866 | 54131833 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54130780 | 54130921 | 54130780 | ID=MS.gene87221.t1.exon6;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54130780 | 54130921 | 54130780 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54130622 | 54130678 | 54130622 | ID=MS.gene87221.t1.exon7;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54130622 | 54130678 | 54130622 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54130189 | 54130286 | 54130189 | ID=MS.gene87221.t1.exon8;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54130189 | 54130286 | 54130189 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54129988 | 54130059 | 54129988 | ID=MS.gene87221.t1.exon9;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54129988 | 54130059 | 54129988 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54129649 | 54129863 | 54129649 | ID=MS.gene87221.t1.exon10;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54129649 | 54129863 | 54129649 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54128762 | 54128943 | 54128762 | ID=MS.gene87221.t1.exon11;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54128762 | 54128943 | 54128762 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54128343 | 54128543 | 54128343 | ID=MS.gene87221.t1.exon12;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54128343 | 54128543 | 54128343 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54128175 | 54128249 | 54128175 | ID=MS.gene87221.t1.exon13;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54128175 | 54128249 | 54128175 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54125404 | 54125859 | 54125404 | ID=MS.gene87221.t1.exon14;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54125404 | 54125859 | 54125404 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54123387 | 54123434 | 54123387 | ID=MS.gene87221.t1.exon15;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54123387 | 54123434 | 54123387 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54123208 | 54123267 | 54123208 | ID=MS.gene87221.t1.exon16;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54123208 | 54123267 | 54123208 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54122208 | 54122291 | 54122208 | ID=MS.gene87221.t1.exon17;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54122208 | 54122291 | 54122208 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54121964 | 54122068 | 54121964 | ID=MS.gene87221.t1.exon18;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54121964 | 54122068 | 54121964 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54121135 | 54121248 | 54121135 | ID=MS.gene87221.t1.exon19;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54121135 | 54121248 | 54121135 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54120937 | 54121037 | 54120937 | ID=MS.gene87221.t1.exon20;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54120937 | 54121037 | 54120937 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54120367 | 54120478 | 54120367 | ID=MS.gene87221.t1.exon21;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54120367 | 54120478 | 54120367 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| chr4.4 | exon | 54120040 | 54120168 | 54120040 | ID=MS.gene87221.t1.exon22;Parent=MS.gene87221.t1 |
| chr4.4 | CDS | 54120040 | 54120168 | 54120040 | ID=cds.MS.gene87221.t1;Parent=MS.gene87221.t1 |
| Gene Sequence |
| Protein sequence |
