AlfalfaGEDB | MS.gene87253

M. sativa cultivar XinJiangDaYe / MS.gene87253

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87253.t1	RHN81411.1	73.4	770	189	5	1	765	1	759	0.00E+00	1128.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87253.t1	Q9SY66	47.9	662	334	4	16	672	10	665	2.6e-178	627.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87253.t1	A0A396JX52	73.4	770	189	5	1	765	1	759	0.0e+00	1128.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene87253.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87253.t1	MTR_3g450850	66.327	294	87	3	1	290	1	286	1.93e-127	384
MS.gene87253.t1	MTR_4g035820	42.537	268	137	5	45	306	68	324	2.24e-58	211
MS.gene87253.t1	MTR_4g035820	46.875	96	51	0	439	534	326	421	3.43e-20	95.9
MS.gene87253.t1	MTR_4g071400	70.968	124	33	1	594	717	1	121	2.83e-53	180
MS.gene87253.t1	MTR_3g012160	87.097	93	12	0	199	291	1	93	2.84e-48	165
MS.gene87253.t1	MTR_1g070355	34.510	255	150	8	45	296	69	309	1.96e-31	130
MS.gene87253.t1	MTR_6g051425	29.286	280	185	5	55	329	18	289	1.73e-30	123
MS.gene87253.t1	MTR_5g076070	27.119	236	161	5	57	290	56	282	4.21e-23	100
MS.gene87253.t1	MTR_5g083630	67.241	58	19	0	200	257	19	76	4.12e-19	84.0
MS.gene87253.t1	MTR_6g014355	37.662	154	79	4	133	277	14	159	3.68e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87253.t1	AT1G10240	49.524	630	307	4	48	672	42	665	0.0	646
MS.gene87253.t1	AT1G10240	49.524	630	307	4	48	672	42	665	0.0	646
MS.gene87253.t1	AT5G28530	43.259	675	339	11	25	678	28	679	0.0	545
MS.gene87253.t1	AT5G28530	43.259	675	339	11	25	678	28	679	0.0	545
MS.gene87253.t1	AT5G28530	43.259	675	343	11	25	678	28	683	0.0	543
MS.gene87253.t1	AT5G28530	38.647	665	321	12	25	678	28	616	3.52e-147	445
MS.gene87253.t1	AT5G28530	38.647	665	325	12	25	678	28	620	8.19e-147	444
MS.gene87253.t1	AT4G38180	30.836	574	379	7	54	617	73	638	1.14e-84	285
MS.gene87253.t1	AT4G15090	28.716	693	443	16	54	721	51	717	4.03e-82	280
MS.gene87253.t1	AT4G15090	28.716	693	443	16	54	721	51	717	4.03e-82	280

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Find 107 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTCAAGGCCAAAAGG+TGG	0.631199	2.2:-14550002	MS.gene87253:CDS
AAATACATTGTAAAATTCAT+AGG	0.433492	2.2:+14552110	None:intergenic
AAATATGCTGCCATTCATAC+AGG	0.475969	2.2:-14550506	MS.gene87253:CDS
AAATCCAAAGGTCGGCCAAA+AGG	0.496241	2.2:-14550020	MS.gene87253:CDS
AAATTCCTCCGACAGATAAA+AGG	0.354413	2.2:-14550140	MS.gene87253:CDS
AACCGTTATGATATGCCACT+TGG	0.555362	2.2:-14551424	MS.gene87253:CDS
AACTAGTACTGTTCATGAAT+GGG	0.472834	2.2:-14552172	MS.gene87253:CDS
AAGGTCGGCCAAAAGGTTCA+AGG	0.530766	2.2:-14550013	MS.gene87253:CDS
AATAGTCCTTCAAATAAGCT+AGG	0.536211	2.2:+14550883	None:intergenic
AATCATCTATAGATTCTAAA+TGG	0.332504	2.2:+14550997	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAGTACTGTTCATGAAT+GGG	-	chr2.2:14549881-14549900	MS.gene87253:CDS	30.0%
AATAGTCCTTCAAATAAGCT+AGG	+	chr2.2:14551173-14551192	None:intergenic	30.0%
ACTTTAAACAGGAGTTTCAT+AGG	-	chr2.2:14551028-14551047	MS.gene87253:CDS	30.0%
AGAAGAAATCTTCATTCAGA+TGG	-	chr2.2:14550717-14550736	MS.gene87253:intron	30.0%
ATATCCACAAACAATCCTTA+CGG	-	chr2.2:14550876-14550895	MS.gene87253:CDS	30.0%
CCATGAGTTATTAGATGATA+AGG	-	chr2.2:14550223-14550242	MS.gene87253:CDS	30.0%
CCTTATCATCTAATAACTCA+TGG	+	chr2.2:14550226-14550245	None:intergenic	30.0%
CTTTAAACAGGAGTTTCATA+GGG	-	chr2.2:14551029-14551048	MS.gene87253:CDS	30.0%
GAAGAAATCTTCATTCAGAT+GGG	-	chr2.2:14550718-14550737	MS.gene87253:intron	30.0%
GAATTAATGGTTGCACAATT+TGG	-	chr2.2:14551093-14551112	MS.gene87253:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	14549747	14552328	14549747	ID=MS.gene87253
chr2.2	mRNA	14549747	14552328	14549747	ID=MS.gene87253.t1;Parent=MS.gene87253
chr2.2	exon	14551327	14552328	14551327	ID=MS.gene87253.t1.exon1;Parent=MS.gene87253.t1
chr2.2	CDS	14551327	14552328	14551327	ID=cds.MS.gene87253.t1;Parent=MS.gene87253.t1
chr2.2	exon	14550782	14551225	14550782	ID=MS.gene87253.t1.exon2;Parent=MS.gene87253.t1
chr2.2	CDS	14550782	14551225	14550782	ID=cds.MS.gene87253.t1;Parent=MS.gene87253.t1
chr2.2	exon	14549876	14550696	14549876	ID=MS.gene87253.t1.exon3;Parent=MS.gene87253.t1
chr2.2	CDS	14549876	14550696	14549876	ID=cds.MS.gene87253.t1;Parent=MS.gene87253.t1
chr2.2	exon	14549747	14549789	14549747	ID=MS.gene87253.t1.exon4;Parent=MS.gene87253.t1
chr2.2	CDS	14549747	14549789	14549747	ID=cds.MS.gene87253.t1;Parent=MS.gene87253.t1

Gene Sequence

>MS.gene87253

ATGACATCTGAAGTAAGAAATAGTGCTAGTGATTGGCACTTAGAGCTTCTTAAAGATTACACTTCTACATATGAAGATGATGAATATAGAAATTCATTTAGCTTTCAAGAGCCACATCAAGAACCTCAGCCTGGAACTAGTACTGTTCATGAATGGGTTCCTTTTGAAGGACAAATTTTTAACACTGATGATGATGCCTATGAATTTTACAATGTATTTGCACGAAAAAATGGATTTTCGATTAGGCGTGATCGCATTTGCAAATCTCATAAAAATGAGTCTGAAGATAATCCATCAGGAGTTTATAAAAGAGAATTTGTTTGTCATCGAGCTGGTATTGTTAAGCAACGCAAAGTTGATGAAGTGAAAAATCAAAGGAAACGGAAATCTTCGCGATGTAGTTGTAGCGCAAAGTTGTTGGTTTCTAAAGGCTTTGAAGGAAAATGGGTGGTTAAATATTTTAATAATAACCACAACCATGAGTTATTAGATGATAAGGAGGTTCAATTTCTTCCCGCTTATCGTAACATCCCAATTGACGATCAAAATCGTATATTATTGTTATCAAAAGCAGGTTGCTCTGTGAGTCTCATAATGAGAGTGCTTGAGTTAGAGAAATCAATAGATACAGGTAACTTACCATTTCTGGAGAAGGATATTAGAAATTTTATTCAATCACACAGTGGTATTGATAAAGAAAATGATGCTTCAGATGTTCTCAAATTATGTAAAAGTCTGAAAGATATGGATAGTGCATTTGAATATGATTTCACAATAGATGAAAGTAACAAACTAGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAATCTTTTGGTGATGTGGTTGTTTTCGATACTACATATCGAATAAACCGTTATGATATGCCACTTGGAATGTGGATTGGGGTTGATAATCATGGAAATTCAATTTTCTTTGGCTGTGTTCTATTGCGAAATGAGAAGAAATCTTCATTCAGATGGGCTTTAAAGGTAAAATTATATTTACATGATAATTTTGTATCTCCTGTCTAACAAAAAAATGATTATTATGTTTATAATAACATTAAAAAAATGATTATTTTCTATTTCAGAGTTTTCTAACTTTTGTTGAAGGAAAATATCCACAAACAATCCTTACGGATCAAGATCTTGCACTTACAGAAGCCATTGCAAAGGAATTGCCAAATACAAAACATGCATTTTGCATATGGCATATTGTTGCAAAGTTGTCTAGTTGGTTTTCTTTTCCGTTGGGTTCGAGATATATTGACTTTAAACAGGAGTTTCATAGGGTGTACCATTTAGAATCTATAGATGATTTTGAACGAGAATGGGAATTAATGGTTGCACAATTTGGTCTAAGCAAGGACGATCATATTGACTTGCTCTACTCTCATCGTCAATTTTGGGGCCTAGCTTATTTGAAGGACTATTTTTTTGCTGGGATGACGACAACTGGACGTTCTGAATCAATCAACTCGTATGTAAAAAGATTCTTAGATGTGAAAACAAGTTTGACTGATTTTGTAAATCAGGTATGAACTTATTTTAGTAACTTGTTATAGGTACGTTGTATTTTGGAAATTGAAACTTACATGTAATTAATATATTTGTGAGTAGGTTGGTGTTGCTGTCAAAATTAGACATCAAGCAGGAGAAGAGGCAAGAATGCGTCAAAAGTACCATAATTCTCTAATTAGGACAACTTTTCCTATTGAGGAACATGCTGCAAAAATACTCACTCCATATGCGTTTGAGTTAATCCAACATGAGATTGAATTGTCTACAAAATATGCTGCCATTCATACAGGTAACAATTATATCGTGCGACATCATACCAAAGTTGATGGTGGTCGTCTAGTAAGCTGGATAGAAGAAGAAGAATCAATTTCTTGTTCTTGTAAAGAATTTGAGTTTTCTGGAATATTGTGCAGACATGCCATTCGAGTGCTACTTGTAAAAAATTATTTTCACTTCCCATCAAAATATCTTCCTTTTCGATGGAGAAGAGAAAGTTCATTGATCCCAAAATGCAGTCATATAGTCAAATGCAATAATGGTTCTCATGTTGAGTTTCAGTCTCTAATTCGATGTTTGGAAGTTGAATCATTAAAGACAAAAGAGAGGGAACAAGTTGCTACTGCAGAGTTAGAGAAATTCCTCCGACAGATAAAAGGCATGCCTGCAAGTCAAGATAATTTGATTTATTTGGAACCCAATGTACCCGATGTTCCAAATAATGATGGTTATGATGTTGAAAATCCTGTTGTTTCAAAATCCAAAGGTCGGCCAAAAGGTTCAAGGCCAAAAGGTGGAGTTGAAGCTGCCAAGAAGCTTCGACGTTGTCACGTTCCAAATTGCGGCGGAACCAATCATGACTCGCGGAATTGTCCAAACAAAAAGAAAAATATTGAAGTATTGCCTTCTCAATCTCCTAATAAGTAAGTTCTGATTGTTTATTTTTAAGTTAGTGTCTAGATTTGTACAATGCTATTATTAACTATTTGATTTTATGGTTCTTGGATAGGATCACAAAGGGTTGGAGACAGTCATCTTCAAATGTGCAATGA

Protein sequence

>MS.gene87253.t1

MTSEVRNSASDWHLELLKDYTSTYEDDEYRNSFSFQEPHQEPQPGTSTVHEWVPFEGQIFNTDDDAYEFYNVFARKNGFSIRRDRICKSHKNESEDNPSGVYKREFVCHRAGIVKQRKVDEVKNQRKRKSSRCSCSAKLLVSKGFEGKWVVKYFNNNHNHELLDDKEVQFLPAYRNIPIDDQNRILLLSKAGCSVSLIMRVLELEKSIDTGNLPFLEKDIRNFIQSHSGIDKENDASDVLKLCKSLKDMDSAFEYDFTIDESNKLEHIIWAFGDSIRAYESFGDVVVFDTTYRINRYDMPLGMWIGVDNHGNSIFFGCVLLRNEKKSSFRWALKSFLTFVEGKYPQTILTDQDLALTEAIAKELPNTKHAFCIWHIVAKLSSWFSFPLGSRYIDFKQEFHRVYHLESIDDFEREWELMVAQFGLSKDDHIDLLYSHRQFWGLAYLKDYFFAGMTTTGRSESINSYVKRFLDVKTSLTDFVNQVGVAVKIRHQAGEEARMRQKYHNSLIRTTFPIEEHAAKILTPYAFELIQHEIELSTKYAAIHTGNNYIVRHHTKVDGGRLVSWIEEEESISCSCKEFEFSGILCRHAIRVLLVKNYFHFPSKYLPFRWRRESSLIPKCSHIVKCNNGSHVEFQSLIRCLEVESLKTKEREQVATAELEKFLRQIKGMPASQDNLIYLEPNVPDVPNNDGYDVENPVVSKSKGRPKGSRPKGGVEAAKKLRRCHVPNCGGTNHDSRNCPNKKKNIEVLPSQSPNKITKGWRQSSSNVQ