AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87327.t1 MTR_8g079660 86.742 264 35 0 6 269 1 264 3.94e-162 450
MS.gene87327.t1 MTR_8g079620 68.045 266 48 2 6 271 1 229 5.65e-124 353
MS.gene87327.t1 MTR_8g079580 52.326 172 78 2 6 176 1 169 1.31e-54 176
MS.gene87327.t1 MTR_5g017950 45.638 149 70 2 13 150 8 156 1.02e-39 140
MS.gene87327.t1 MTR_3g073690 53.636 110 51 0 13 122 9 118 2.09e-39 136
MS.gene87327.t1 MTR_3g452660 53.043 115 53 1 13 126 7 121 8.17e-38 135
MS.gene87327.t1 MTR_6g005080 46.154 104 56 0 13 116 10 113 5.36e-32 115
MS.gene87327.t1 MTR_2g093310 48.113 106 55 0 8 113 28 133 5.85e-32 117
MS.gene87327.t1 MTR_4g105170 47.115 104 55 0 13 116 11 114 2.03e-31 115
MS.gene87327.t1 MTR_3g077240 47.115 104 55 0 13 116 10 113 1.25e-30 113
MS.gene87327.t1 MTR_7g033800 45.283 106 58 0 13 118 11 116 1.40e-30 112
MS.gene87327.t1 MTR_6g005070 46.602 103 55 0 13 115 9 111 5.81e-30 110
MS.gene87327.t1 MTR_3g031660 45.545 101 55 0 13 113 7 107 1.21e-29 110
MS.gene87327.t1 MTR_2g068760 46.602 103 55 0 11 113 11 113 1.53e-29 109
MS.gene87327.t1 MTR_5g083230 47.525 101 53 0 13 113 6 106 1.55e-29 109
MS.gene87327.t1 MTR_8g040900 40.411 146 84 1 13 158 7 149 2.33e-29 111
MS.gene87327.t1 MTR_4g060950 46.226 106 56 1 9 113 20 125 2.39e-29 110
MS.gene87327.t1 MTR_4g083680 42.424 132 71 3 13 144 15 141 3.40e-29 109
MS.gene87327.t1 MTR_5g083960 46.154 104 56 0 13 116 39 142 7.31e-29 108
MS.gene87327.t1 MTR_3g094690 47.170 106 56 0 11 116 45 150 7.65e-29 110
MS.gene87327.t1 MTR_3g071590 46.535 101 54 0 13 113 8 108 1.72e-28 107
MS.gene87327.t1 MTR_3g094690 48.113 106 54 1 11 116 45 149 5.51e-28 107
MS.gene87327.t1 MTR_1g095850 48.000 100 52 0 14 113 73 172 7.14e-28 107
MS.gene87327.t1 MTR_5g075020 43.478 115 65 0 11 125 41 155 6.62e-27 104
MS.gene87327.t1 MTR_5g075020 43.478 115 65 0 11 125 45 159 1.03e-26 104
MS.gene87327.t1 MTR_5g083010 47.059 102 54 0 14 115 12 113 1.09e-26 102
MS.gene87327.t1 MTR_7g028905 39.623 106 64 0 9 114 1 106 2.31e-25 97.4
MS.gene87327.t1 MTR_5g093010 39.623 106 64 0 9 114 1 106 4.12e-25 97.8
MS.gene87327.t1 MTR_4g099230 45.098 102 55 1 14 114 3 104 8.51e-25 97.1
MS.gene87327.t1 MTR_3g071420 47.423 97 51 0 14 110 15 111 3.27e-24 96.7
MS.gene87327.t1 MTR_6g027710 42.857 105 59 1 10 113 37 141 3.96e-24 97.4
MS.gene87327.t1 MTR_7g096530 41.748 103 59 1 13 114 14 116 2.39e-22 92.4
MS.gene87327.t1 MTR_6g027700 39.623 106 62 2 6 110 1 105 2.80e-22 92.0
MS.gene87327.t1 MTR_1g070220 43.434 99 55 1 13 110 15 113 1.52e-21 90.1
MS.gene87327.t1 MTR_8g036085 39.048 105 63 1 13 116 23 127 5.79e-21 89.0
MS.gene87327.t1 MTR_8g017090 36.893 103 65 0 14 116 13 115 1.93e-20 89.0
MS.gene87327.t1 MTR_7g074990 40.196 102 60 1 13 113 20 121 2.23e-20 87.4
MS.gene87327.t1 MTR_8g036105 42.718 103 58 1 13 114 18 120 2.92e-20 86.7
MS.gene87327.t1 MTR_6g011250 39.216 102 61 1 14 114 10 111 7.39e-20 84.7
MS.gene87327.t1 MTR_1g070205 39.423 104 62 1 13 115 12 115 4.01e-19 84.0
MS.gene87327.t1 MTR_5g085390 41.284 109 60 2 10 114 3 111 6.04e-19 83.6
MS.gene87327.t1 MTR_6g011200 36.697 109 65 2 10 114 3 111 6.97e-19 84.0
MS.gene87327.t1 MTR_4g107450 38.235 102 63 0 12 113 9 110 2.06e-18 83.2
MS.gene87327.t1 MTR_6g011230 35.088 114 67 1 12 118 10 123 8.67e-18 79.7
MS.gene87327.t1 MTR_2g100020 33.010 103 69 0 12 114 18 120 9.35e-18 81.3
MS.gene87327.t1 MTR_7g096610 36.538 104 65 1 13 115 8 111 9.96e-18 80.1
MS.gene87327.t1 MTR_5g080470 35.922 103 65 1 14 115 8 110 2.88e-16 75.5
MS.gene87327.t1 MTR_7g075230 38.095 105 62 2 13 114 12 116 4.18e-16 75.1
MS.gene87327.t1 MTR_4g088035 34.884 86 56 0 14 99 7 92 1.70e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87327.t1 AT5G66870 44.872 156 73 2 13 168 7 149 1.29e-38 137
MS.gene87327.t1 AT2G23660 50.909 110 54 0 13 122 5 114 1.33e-34 127
MS.gene87327.t1 AT2G23660 50.909 110 54 0 13 122 5 114 1.33e-34 127
MS.gene87327.t1 AT2G23660 50.909 110 54 0 13 122 5 114 1.33e-34 127
MS.gene87327.t1 AT1G07900 48.113 106 55 0 8 113 28 133 2.11e-32 118
MS.gene87327.t1 AT3G27650 45.133 113 62 0 4 116 30 142 2.23e-31 114
MS.gene87327.t1 AT5G63090 48.077 104 54 0 13 116 11 114 2.27e-31 115
MS.gene87327.t1 AT5G63090 48.077 104 54 0 13 116 11 114 2.27e-31 115
MS.gene87327.t1 AT5G63090 48.077 104 54 0 13 116 11 114 2.27e-31 115
MS.gene87327.t1 AT5G63090 48.077 104 54 0 13 116 11 114 2.27e-31 115
MS.gene87327.t1 AT1G65620 51.887 106 51 0 13 118 9 114 2.87e-31 115
MS.gene87327.t1 AT1G65620 51.887 106 51 0 13 118 9 114 2.87e-31 115
MS.gene87327.t1 AT1G65620 51.887 106 51 0 13 118 9 114 2.87e-31 115
MS.gene87327.t1 AT1G65620 51.887 106 51 0 13 118 9 114 2.87e-31 115
MS.gene87327.t1 AT1G65620 51.887 106 51 0 13 118 9 114 2.87e-31 115
MS.gene87327.t1 AT2G28500 47.619 105 55 0 9 113 51 155 5.39e-31 115
MS.gene87327.t1 AT2G30130 47.525 101 53 0 13 113 8 108 4.91e-30 112
MS.gene87327.t1 AT2G30340 45.283 106 58 0 11 116 51 156 2.56e-28 109
MS.gene87327.t1 AT2G30340 45.283 106 58 0 11 116 50 155 2.79e-28 109
MS.gene87327.t1 AT2G40470 49.057 106 54 0 11 116 18 123 3.48e-28 107
MS.gene87327.t1 AT1G16530 45.192 104 56 1 11 113 12 115 4.96e-28 105
MS.gene87327.t1 AT2G40470 47.321 112 59 0 11 122 43 154 8.84e-28 107
MS.gene87327.t1 AT3G26660 42.574 101 58 0 14 114 6 106 1.60e-27 103
MS.gene87327.t1 AT3G26620 42.574 101 58 0 14 114 6 106 1.90e-27 103
MS.gene87327.t1 AT1G31320 50.000 88 44 0 13 100 13 100 9.57e-27 102
MS.gene87327.t1 AT3G11090 43.000 100 57 0 14 113 12 111 5.88e-24 95.1
MS.gene87327.t1 AT3G50510 40.187 107 64 0 10 116 9 115 1.88e-23 94.7
MS.gene87327.t1 AT3G50510 40.187 107 64 0 10 116 9 115 1.88e-23 94.7
MS.gene87327.t1 AT5G35900 40.385 104 62 0 14 117 6 109 1.44e-22 92.8
MS.gene87327.t1 AT4G00210 43.689 103 57 1 13 114 11 113 2.72e-22 92.4
MS.gene87327.t1 AT1G72980 40.000 100 60 0 14 113 14 113 3.86e-22 91.7
MS.gene87327.t1 AT3G47870 39.048 105 64 0 14 118 37 141 1.53e-21 92.4
MS.gene87327.t1 AT3G03760 42.157 102 58 1 13 113 51 152 1.70e-21 91.3
MS.gene87327.t1 AT2G42430 38.095 105 64 1 13 116 15 119 6.71e-20 86.7
MS.gene87327.t1 AT3G13850 36.893 103 65 0 14 116 37 139 1.16e-19 86.3
MS.gene87327.t1 AT4G00220 40.000 100 59 1 16 114 20 119 6.34e-19 83.6
MS.gene87327.t1 AT3G58190 38.462 104 63 1 13 115 11 114 1.10e-18 82.8
MS.gene87327.t1 AT2G45410 42.000 100 57 1 16 114 19 118 3.51e-18 80.5
MS.gene87327.t1 AT2G42440 35.577 104 66 1 13 115 7 110 1.08e-17 80.5
MS.gene87327.t1 AT2G45420 37.000 100 62 1 16 114 40 139 5.12e-17 79.0
MS.gene87327.t1 AT1G06280 41.558 77 45 0 14 90 25 101 4.68e-16 75.1
MS.gene87327.t1 AT4G22700 36.508 126 76 4 14 136 6 130 2.39e-15 72.8
MS.gene87327.t1 AT2G31310 31.731 104 70 1 13 115 7 110 3.39e-15 72.4
MS.gene87327.t1 AT5G06080 33.654 104 68 1 14 116 8 111 4.27e-15 72.0

Find 80 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCTTGTTCGTGATTC+TGG 0.092323 8.3:+24627259 MS.gene87327:CDS
ATCTCTCTTATTATTCTTGT+TGG 0.231044 8.3:-24627384 None:intergenic
CTCGCCTTTCCTGATTGTTT+CGG 0.296820 8.3:+24626956 MS.gene87327:CDS
ATGTTCTTGTTCGTGATTCT+GGG 0.333393 8.3:+24627260 MS.gene87327:CDS
TAATATCGCATGGCATTGTT+AGG 0.339594 8.3:+24626471 None:intergenic
ATCAAGGTACACTCTGTGTT+TGG 0.360225 8.3:+24626707 MS.gene87327:CDS
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.3:-24626851 None:intergenic
TGAACAAGTTATTGAATCAT+TGG 0.367700 8.3:+24626778 MS.gene87327:CDS
GAGGAACGTCGGGAAGCATC+TGG 0.370862 8.3:-24627294 None:intergenic
GACCTGAGGACTGAGGTATT+TGG 0.383512 8.3:-24626921 None:intergenic
TTAAAACAAAAGCTTCTTAG+TGG 0.403319 8.3:+24627091 MS.gene87327:CDS
AGATGCTTGCACGCTGCGCA+CGG 0.403514 8.3:-24626617 None:intergenic
ATAGTATCAGCCCTAGAAAA+AGG 0.404708 8.3:-24627340 None:intergenic
GGCTTAAAGCCGAAACAATC+AGG 0.414666 8.3:-24626965 None:intergenic
GTTCGTGATTCTGGGTTGGC+AGG 0.416595 8.3:+24627268 MS.gene87327:CDS
ATGAAACGCTCCGGGTTGTC+AGG 0.419582 8.3:-24626686 None:intergenic
CACGAACATTAACATTCATC+TGG 0.422515 8.3:-24627144 None:intergenic
GTTGGTGGTGGTTCTGTCAA+TGG 0.425339 8.3:+24627202 MS.gene87327:CDS
CAAGAACATCAGCATCCATC+TGG 0.431742 8.3:-24627246 None:intergenic
TTGACAGAACCACCACCAAC+AGG 0.441240 8.3:-24627199 None:intergenic
AGGTTGAGGGACCCAGTCTA+TGG 0.443471 8.3:+24626818 MS.gene87327:CDS
GCCAACCCATCATCACCATC+GGG 0.452840 8.3:-24627115 None:intergenic
GACAGCCGGTGCAAGACAAT+TGG 0.454656 8.3:+24627009 MS.gene87327:CDS
CTTCATTCAACCTACCTTGA+AGG 0.457276 8.3:-24626862 None:intergenic
AGCGTGCAAGCATCTCCGTC+AGG 0.463439 8.3:+24626625 MS.gene87327:CDS
AGTGGCCCCGATGGTGATGA+TGG 0.469173 8.3:+24627109 MS.gene87327:CDS
ATAGTCGGTGCAGATGCATC+TGG 0.475778 8.3:-24626986 None:intergenic
GATGCTTGCACGCTGCGCAC+GGG 0.491513 8.3:-24626616 None:intergenic
GGGTTGTCAGGTGGAAAGTA+AGG 0.500064 8.3:-24626674 None:intergenic
TGCCAACCCATCATCACCAT+CGG 0.501173 8.3:-24627116 None:intergenic
TGAGGCTGAGGCCAGGTTGA+GGG 0.503784 8.3:+24626805 MS.gene87327:CDS
GCATCAACATGAGGAACGTC+GGG 0.507797 8.3:-24627304 None:intergenic
TATTGAATCATTGGTGTATG+AGG 0.512390 8.3:+24626787 MS.gene87327:CDS
GTTAATGTTCGTGTTGAAAA+CGG 0.513261 8.3:+24627154 MS.gene87327:CDS
AGGTCCCACCCTGTTGGTGG+TGG 0.515024 8.3:+24627190 MS.gene87327:CDS
GACCCAGTCTATGGTTGTGC+GGG 0.517881 8.3:+24626827 MS.gene87327:CDS
GGCCAAATACCTCAGTCCTC+AGG 0.517957 8.3:+24626919 MS.gene87327:CDS
ATGAGGCTGAGGCCAGGTTG+AGG 0.520828 8.3:+24626804 MS.gene87327:CDS
GATGGTGATGATGGGTTGGC+AGG 0.524172 8.3:+24627118 MS.gene87327:CDS
GGACCCGCACAACCATAGAC+TGG 0.527412 8.3:-24626830 None:intergenic
ACTAGGTCCCACCCTGTTGG+TGG 0.529498 8.3:+24627187 MS.gene87327:CDS
AAAAGCCAATTGTCTTGCAC+CGG 0.536187 8.3:-24627014 None:intergenic
CCCCGATGGTGATGATGGGT+TGG 0.540092 8.3:+24627114 MS.gene87327:CDS
TGTACCTTGATGAAACGCTC+CGG 0.546143 8.3:-24626695 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.3:+24626848 MS.gene87327:CDS
CTTGCACCGGCTGTCATAGT+CGG 0.551252 8.3:-24627001 None:intergenic
ATCATTGGTGTATGAGGCTG+AGG 0.566661 8.3:+24626793 MS.gene87327:CDS
CAAGAGTGTGAAGAACGAAC+TGG 0.569336 8.3:+24626898 MS.gene87327:CDS
AAAACGGTGGCACTAGTACT+AGG 0.572087 8.3:+24627170 MS.gene87327:CDS
TGGTGTATGAGGCTGAGGCC+AGG 0.580144 8.3:+24626798 MS.gene87327:CDS
GTACCTTGATGAAACGCTCC+GGG 0.582999 8.3:-24626694 None:intergenic
TCTTGTTCGTGATTCTGGGT+TGG 0.583224 8.3:+24627264 MS.gene87327:CDS
AAACGCTCCGGGTTGTCAGG+TGG 0.583405 8.3:-24626683 None:intergenic
AGGAACGTCGGGAAGCATCT+GGG 0.584489 8.3:-24627293 None:intergenic
ATAGACTGGGTCCCTCAACC+TGG 0.587297 8.3:-24626816 None:intergenic
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.3:+24627100 MS.gene87327:CDS
TTACTTTCCACCTGACAACC+CGG 0.587420 8.3:+24626676 MS.gene87327:CDS
AGCATCAACATGAGGAACGT+CGG 0.589738 8.3:-24627305 None:intergenic
TGTCAATGGCAGTAGTGACT+CGG 0.589855 8.3:+24627216 MS.gene87327:CDS
GGACCCAGTCTATGGTTGTG+CGG 0.592627 8.3:+24626826 MS.gene87327:CDS
AGTACTAGGTCCCACCCTGT+TGG 0.592718 8.3:+24627184 MS.gene87327:CDS
GACCCGCACAACCATAGACT+GGG 0.592838 8.3:-24626829 None:intergenic
AGCTTGAGTCGCACTCCTGA+CGG 0.594185 8.3:-24626640 None:intergenic
CAACCCGGAGCGTTTCATCA+AGG 0.598807 8.3:+24626691 MS.gene87327:CDS
TGACTCGGCAAGACTCCAGA+TGG 0.599897 8.3:+24627231 MS.gene87327:CDS
TCTGCACCGACTATGACAGC+CGG 0.611769 8.3:+24626995 MS.gene87327:CDS
TAGGTTGAATGAAGTTCGAA+CGG 0.624296 8.3:+24626871 MS.gene87327:CDS
CAGCAAATGACCTTCAAGGT+AGG 0.629800 8.3:+24626852 MS.gene87327:CDS
GTGGCCCCGATGGTGATGAT+GGG 0.639305 8.3:+24627110 MS.gene87327:CDS
AAAGCCGAAACAATCAGGAA+AGG 0.640067 8.3:-24626960 None:intergenic
AGAACCACCACCAACAGGGT+GGG 0.644655 8.3:-24627194 None:intergenic
AGAACAAATTCAACGACCTG+AGG 0.670458 8.3:-24626935 None:intergenic
TGACAGAACCACCACCAACA+GGG 0.675621 8.3:-24627198 None:intergenic
CAGAACCACCACCAACAGGG+TGG 0.682884 8.3:-24627195 None:intergenic
AGGGCTGATACTATTGACAA+TGG 0.685373 8.3:+24627349 MS.gene87327:CDS
CAGGTGGAAAGTAAGGAGCA+AGG 0.685400 8.3:-24626667 None:intergenic
ACAGAAGGAGCATCAACATG+AGG 0.691100 8.3:-24627313 None:intergenic
ATTCAACGACCTGAGGACTG+AGG 0.713865 8.3:-24626928 None:intergenic
CCAACCCATCATCACCATCG+GGG 0.738435 8.3:-24627114 None:intergenic
AATGTTCGTGTTGAAAACGG+TGG 0.764052 8.3:+24627157 MS.gene87327:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAGAAAAAAATATAGACAA+TGG + chr8.3:24626495-24626514 MS.gene87327:intron 20.0%
! TGAACAAGTTATTGAATCAT+TGG + chr8.3:24626778-24626797 MS.gene87327:CDS 25.0%
! TTAAAACAAAAGCTTCTTAG+TGG + chr8.3:24627091-24627110 MS.gene87327:CDS 25.0%
GTTAATGTTCGTGTTGAAAA+CGG + chr8.3:24627154-24627173 MS.gene87327:CDS 30.0%
GTTAATTTAATGTGCAGTGA+TGG + chr8.3:24626577-24626596 MS.gene87327:intron 30.0%
TATTGAATCATTGGTGTATG+AGG + chr8.3:24626787-24626806 MS.gene87327:CDS 30.0%
ATAGTATCAGCCCTAGAAAA+AGG - chr8.3:24627343-24627362 None:intergenic 35.0%
ATGTTCTTGTTCGTGATTCT+GGG + chr8.3:24627260-24627279 MS.gene87327:CDS 35.0%
CACGAACATTAACATTCATC+TGG - chr8.3:24627147-24627166 None:intergenic 35.0%
! TAGGTTGAATGAAGTTCGAA+CGG + chr8.3:24626871-24626890 MS.gene87327:CDS 35.0%
! TTCTGTGCTTCCTTTTTCTA+GGG + chr8.3:24627330-24627349 MS.gene87327:CDS 35.0%
!!! ATTGGCTTTTAATCAGCTGT+CGG + chr8.3:24627027-24627046 MS.gene87327:CDS 35.0%
AAAAGCCAATTGTCTTGCAC+CGG - chr8.3:24627017-24627036 None:intergenic 40.0%
AAAGCCGAAACAATCAGGAA+AGG - chr8.3:24626963-24626982 None:intergenic 40.0%
AATGTTCGTGTTGAAAACGG+TGG + chr8.3:24627157-24627176 MS.gene87327:CDS 40.0%
AGAACAAATTCAACGACCTG+AGG - chr8.3:24626938-24626957 None:intergenic 40.0%
AGGGCTGATACTATTGACAA+TGG + chr8.3:24627349-24627368 MS.gene87327:CDS 40.0%
ATCAAGGTACACTCTGTGTT+TGG + chr8.3:24626707-24626726 MS.gene87327:CDS 40.0%
CTTCATTCAACCTACCTTGA+AGG - chr8.3:24626865-24626884 None:intergenic 40.0%
GATGTTCTTGTTCGTGATTC+TGG + chr8.3:24627259-24627278 MS.gene87327:CDS 40.0%
! CTAGAAAAAGGAAGCACAGA+AGG - chr8.3:24627331-24627350 None:intergenic 40.0%
! CTTCTGTGCTTCCTTTTTCT+AGG + chr8.3:24627329-24627348 MS.gene87327:CDS 40.0%
AAAACGGTGGCACTAGTACT+AGG + chr8.3:24627170-24627189 MS.gene87327:CDS 45.0%
AGCATCAACATGAGGAACGT+CGG - chr8.3:24627308-24627327 None:intergenic 45.0%
ATCATTGGTGTATGAGGCTG+AGG + chr8.3:24626793-24626812 MS.gene87327:CDS 45.0%
CAAGAACATCAGCATCCATC+TGG - chr8.3:24627249-24627268 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG + chr8.3:24626852-24626871 MS.gene87327:CDS 45.0%
CTACCTTGAAGGTCATTTGC+TGG - chr8.3:24626854-24626873 None:intergenic 45.0%
CTCGCCTTTCCTGATTGTTT+CGG + chr8.3:24626956-24626975 MS.gene87327:CDS 45.0%
GGCTTAAAGCCGAAACAATC+AGG - chr8.3:24626968-24626987 None:intergenic 45.0%
TCTTGTTCGTGATTCTGGGT+TGG + chr8.3:24627264-24627283 MS.gene87327:CDS 45.0%
TGTACCTTGATGAAACGCTC+CGG - chr8.3:24626698-24626717 None:intergenic 45.0%
TGTCAATGGCAGTAGTGACT+CGG + chr8.3:24627216-24627235 MS.gene87327:CDS 45.0%
TTACTTTCCACCTGACAACC+CGG + chr8.3:24626676-24626695 MS.gene87327:CDS 45.0%
! CAAGAGTGTGAAGAACGAAC+TGG + chr8.3:24626898-24626917 MS.gene87327:CDS 45.0%
!! ACAGAAGGAGCATCAACATG+AGG - chr8.3:24627316-24627335 None:intergenic 45.0%
ATAGTCGGTGCAGATGCATC+TGG - chr8.3:24626989-24627008 None:intergenic 50.0%
ATTCAACGACCTGAGGACTG+AGG - chr8.3:24626931-24626950 None:intergenic 50.0%
CAGGTGGAAAGTAAGGAGCA+AGG - chr8.3:24626670-24626689 None:intergenic 50.0%
GCATCAACATGAGGAACGTC+GGG - chr8.3:24627307-24627326 None:intergenic 50.0%
GGGTTGTCAGGTGGAAAGTA+AGG - chr8.3:24626677-24626696 None:intergenic 50.0%
GGTCCAGCAAATGACCTTCA+AGG + chr8.3:24626848-24626867 MS.gene87327:CDS 50.0%
GTACCTTGATGAAACGCTCC+GGG - chr8.3:24626697-24626716 None:intergenic 50.0%
TGACAGAACCACCACCAACA+GGG - chr8.3:24627201-24627220 None:intergenic 50.0%
TGCCAACCCATCATCACCAT+CGG - chr8.3:24627119-24627138 None:intergenic 50.0%
TTGACAGAACCACCACCAAC+AGG - chr8.3:24627202-24627221 None:intergenic 50.0%
! GACCTGAGGACTGAGGTATT+TGG - chr8.3:24626924-24626943 None:intergenic 50.0%
!! GTTGGTGGTGGTTCTGTCAA+TGG + chr8.3:24627202-24627221 MS.gene87327:CDS 50.0%
AAGCTTCTTAGTGGCCCCGA+TGG + chr8.3:24627100-24627119 MS.gene87327:CDS 55.0%
AGAACCACCACCAACAGGGT+GGG - chr8.3:24627197-24627216 None:intergenic 55.0%
AGCTTGAGTCGCACTCCTGA+CGG - chr8.3:24626643-24626662 None:intergenic 55.0%
AGGTTGAGGGACCCAGTCTA+TGG + chr8.3:24626818-24626837 MS.gene87327:CDS 55.0%
AGTACTAGGTCCCACCCTGT+TGG + chr8.3:24627184-24627203 MS.gene87327:CDS 55.0%
ATAGACTGGGTCCCTCAACC+TGG - chr8.3:24626819-24626838 None:intergenic 55.0%
ATGAAACGCTCCGGGTTGTC+AGG - chr8.3:24626689-24626708 None:intergenic 55.0%
CCAACCCATCATCACCATCG+GGG - chr8.3:24627117-24627136 None:intergenic 55.0%
GACAGCCGGTGCAAGACAAT+TGG + chr8.3:24627009-24627028 MS.gene87327:CDS 55.0%
GACCCAGTCTATGGTTGTGC+GGG + chr8.3:24626827-24626846 MS.gene87327:CDS 55.0%
GACCCGCACAACCATAGACT+GGG - chr8.3:24626832-24626851 None:intergenic 55.0%
GCCAACCCATCATCACCATC+GGG - chr8.3:24627118-24627137 None:intergenic 55.0%
GGACCCAGTCTATGGTTGTG+CGG + chr8.3:24626826-24626845 MS.gene87327:CDS 55.0%
GGCCAAATACCTCAGTCCTC+AGG + chr8.3:24626919-24626938 MS.gene87327:CDS 55.0%
! CAACCCGGAGCGTTTCATCA+AGG + chr8.3:24626691-24626710 MS.gene87327:CDS 55.0%
! TGACTCGGCAAGACTCCAGA+TGG + chr8.3:24627231-24627250 MS.gene87327:CDS 55.0%
!! AGGAACGTCGGGAAGCATCT+GGG - chr8.3:24627296-24627315 None:intergenic 55.0%
!! CTTGCACCGGCTGTCATAGT+CGG - chr8.3:24627004-24627023 None:intergenic 55.0%
!! GATGGTGATGATGGGTTGGC+AGG + chr8.3:24627118-24627137 MS.gene87327:CDS 55.0%
!! GTTCGTGATTCTGGGTTGGC+AGG + chr8.3:24627268-24627287 MS.gene87327:CDS 55.0%
!! TCTGCACCGACTATGACAGC+CGG + chr8.3:24626995-24627014 MS.gene87327:CDS 55.0%
AAACGCTCCGGGTTGTCAGG+TGG - chr8.3:24626686-24626705 None:intergenic 60.0%
ACTAGGTCCCACCCTGTTGG+TGG + chr8.3:24627187-24627206 MS.gene87327:CDS 60.0%
AGATGCTTGCACGCTGCGCA+CGG - chr8.3:24626620-24626639 None:intergenic 60.0%
AGCGTGCAAGCATCTCCGTC+AGG + chr8.3:24626625-24626644 MS.gene87327:CDS 60.0%
ATGAGGCTGAGGCCAGGTTG+AGG + chr8.3:24626804-24626823 MS.gene87327:CDS 60.0%
CAGAACCACCACCAACAGGG+TGG - chr8.3:24627198-24627217 None:intergenic 60.0%
GGACCCGCACAACCATAGAC+TGG - chr8.3:24626833-24626852 None:intergenic 60.0%
TGGTGTATGAGGCTGAGGCC+AGG + chr8.3:24626798-24626817 MS.gene87327:CDS 60.0%
! AGTGGCCCCGATGGTGATGA+TGG + chr8.3:24627109-24627128 MS.gene87327:CDS 60.0%
! GTGGCCCCGATGGTGATGAT+GGG + chr8.3:24627110-24627129 MS.gene87327:CDS 60.0%
! TGAGGCTGAGGCCAGGTTGA+GGG + chr8.3:24626805-24626824 MS.gene87327:CDS 60.0%
!! CCCCGATGGTGATGATGGGT+TGG + chr8.3:24627114-24627133 MS.gene87327:CDS 60.0%
!! GAGGAACGTCGGGAAGCATC+TGG - chr8.3:24627297-24627316 None:intergenic 60.0%
GATGCTTGCACGCTGCGCAC+GGG - chr8.3:24626619-24626638 None:intergenic 65.0%
! AGGTCCCACCCTGTTGGTGG+TGG + chr8.3:24627190-24627209 MS.gene87327:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 24626480 24627396 24626480 ID=MS.gene87327
chr8.3 mRNA 24626480 24627396 24626480 ID=MS.gene87327.t1;Parent=MS.gene87327
chr8.3 exon 24626480 24626492 24626480 ID=MS.gene87327.t1.exon1;Parent=MS.gene87327.t1
chr8.3 CDS 24626480 24626492 24626480 ID=cds.MS.gene87327.t1;Parent=MS.gene87327.t1
chr8.3 exon 24626594 24627396 24626594 ID=MS.gene87327.t1.exon2;Parent=MS.gene87327.t1
chr8.3 CDS 24626594 24627396 24626594 ID=cds.MS.gene87327.t1;Parent=MS.gene87327.t1
Gene Sequence

>MS.gene87327

ATGGCATTGTTAGGTCAAGAAAAAAATATAGACAATGGATTTTGTTTTCACTTTTTGTGTTATATATTGTTGTTGAATGAACTTAGTAATTGAATTTGTTAATTTAATGTGCAGTGATGGCAAGAGTGATTATTCGCCCGTGCGCAGCGTGCAAGCATCTCCGTCAGGAGTGCGACTCAAGCTGTGACCTTGCTCCTTACTTTCCACCTGACAACCCGGAGCGTTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAATATGTTGAAAAAACTTGATGCTTCACATCATGAACAAGTTATTGAATCATTGGTGTATGAGGCTGAGGCCAGGTTGAGGGACCCAGTCTATGGTTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGTTCGAACGGAACTCAAGAGTGTGAAGAACGAACTGGCCAAATACCTCAGTCCTCAGGTCGTTGAATTTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAGATGCATCTGCACCGACTATGACAGCCGGTGCAAGACAATTGGCTTTTAATCAGCTGTCGGCTGCTGAGTTGACGACTCAACAGATTCACAACTTAAAAGTGTTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGAATGTTAATGTTCGTGTTGAAAACGGTGGCACTAGTACTAGGTCCCACCCTGTTGGTGGTGGTTCTGTCAATGGCAGTAGTGACTCGGCAAGACTCCAGATGGATGCTGATGTTCTTGTTCGTGATTCTGGGTTGGCAGGATCCCAGATGCTTCCCGACGTTCCTCATGTTGATGCTCCTTCTGTGCTTCCTTTTTCTAGGGCTGATACTATTGACAATGGTGAGACTAGCAACCAACAAGAATAA
Protein sequence

>MS.gene87327.t1

MALLVMARVIIRPCAACKHLRQECDSSCDLAPYFPPDNPERFIKVHSVFGKNNVSNMLKKLDASHHEQVIESLVYEAEARLRDPVYGCAGPANDLQGRLNEVRTELKSVKNELAKYLSPQVVEFVLAFPDCFGFKPDASAPTMTAGARQLAFNQLSAAELTTQQIHNLKVLKQKLLSGPDGDDGLAGFQMNVNVRVENGGTSTRSHPVGGGSVNGSSDSARLQMDADVLVRDSGLAGSQMLPDVPHVDAPSVLPFSRADTIDNGETSNQQE