Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87439.t1 | XP_024628855.1 | 35.5 | 256 | 36 | 1 | 11 | 137 | 63 | 318 | 6.10E-29 | 137.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87439.t1 | Q6Z2G9 | 51.9 | 77 | 36 | 1 | 61 | 137 | 341 | 416 | 5.2e-13 | 75.5 |
MS.gene87439.t1 | Q6Z2G9 | 62.2 | 45 | 17 | 0 | 17 | 61 | 87 | 131 | 1.9e-10 | 67.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87439.t1 | G7LES5 | 33.2 | 274 | 36 | 1 | 11 | 137 | 108 | 381 | 5.3e-27 | 130.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene87439.t1 | TF | TUB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87439.t1 | MTR_8g077640 | 67.532 | 77 | 25 | 0 | 61 | 137 | 305 | 381 | 2.95e-30 | 112 |
MS.gene87439.t1 | MTR_8g077640 | 76.471 | 51 | 12 | 0 | 11 | 61 | 108 | 158 | 3.50e-12 | 62.4 |
MS.gene87439.t1 | MTR_8g077195 | 54.639 | 97 | 42 | 1 | 10 | 106 | 65 | 159 | 4.29e-20 | 85.1 |
MS.gene87439.t1 | MTR_8g077195 | 56.757 | 74 | 31 | 1 | 64 | 137 | 328 | 400 | 3.51e-18 | 79.7 |
MS.gene87439.t1 | MTR_8g077650 | 46.465 | 99 | 52 | 1 | 39 | 137 | 227 | 324 | 1.48e-17 | 77.4 |
MS.gene87439.t1 | MTR_1g022370 | 53.247 | 77 | 35 | 1 | 61 | 137 | 335 | 410 | 2.30e-17 | 77.4 |
MS.gene87439.t1 | MTR_1g022370 | 60.000 | 45 | 18 | 0 | 17 | 61 | 89 | 133 | 2.85e-11 | 60.1 |
MS.gene87439.t1 | MTR_8g077675 | 67.308 | 52 | 17 | 0 | 10 | 61 | 60 | 111 | 6.27e-17 | 75.9 |
MS.gene87439.t1 | MTR_5g020580 | 54.054 | 74 | 33 | 1 | 64 | 137 | 332 | 404 | 8.14e-17 | 75.9 |
MS.gene87439.t1 | MTR_5g020580 | 63.462 | 52 | 19 | 0 | 10 | 61 | 67 | 118 | 4.44e-16 | 73.6 |
MS.gene87439.t1 | MTR_8g077620 | 61.538 | 52 | 20 | 0 | 10 | 61 | 64 | 115 | 6.67e-15 | 70.5 |
MS.gene87439.t1 | MTR_8g077620 | 51.948 | 77 | 31 | 3 | 66 | 137 | 306 | 381 | 4.82e-13 | 65.1 |
MS.gene87439.t1 | MTR_2g076200 | 49.351 | 77 | 38 | 1 | 61 | 137 | 284 | 359 | 1.79e-14 | 68.9 |
MS.gene87439.t1 | MTR_1g088960 | 42.453 | 106 | 53 | 4 | 34 | 137 | 291 | 390 | 1.67e-13 | 66.2 |
MS.gene87439.t1 | MTR_2g020280 | 45.455 | 77 | 39 | 2 | 61 | 137 | 209 | 282 | 9.85e-13 | 63.9 |
MS.gene87439.t1 | MTR_2g020280 | 45.455 | 77 | 39 | 2 | 61 | 137 | 308 | 381 | 1.14e-12 | 63.9 |
MS.gene87439.t1 | MTR_2g007930 | 45.000 | 80 | 37 | 2 | 64 | 137 | 337 | 415 | 3.90e-12 | 62.4 |
MS.gene87439.t1 | MTR_1g098790 | 55.556 | 45 | 20 | 0 | 17 | 61 | 72 | 116 | 2.23e-11 | 60.5 |
MS.gene87439.t1 | MTR_1g098790 | 41.860 | 86 | 37 | 2 | 64 | 137 | 335 | 419 | 5.33e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87439.t1 | AT2G18280 | 50.000 | 74 | 36 | 1 | 64 | 137 | 309 | 381 | 6.94e-15 | 70.5 |
MS.gene87439.t1 | AT2G18280 | 61.702 | 47 | 18 | 0 | 15 | 61 | 65 | 111 | 4.37e-14 | 68.2 |
MS.gene87439.t1 | AT2G18280 | 50.000 | 74 | 36 | 1 | 64 | 137 | 309 | 381 | 6.94e-15 | 70.5 |
MS.gene87439.t1 | AT2G18280 | 61.702 | 47 | 18 | 0 | 15 | 61 | 65 | 111 | 4.37e-14 | 68.2 |
MS.gene87439.t1 | AT1G53320 | 44.444 | 99 | 52 | 2 | 39 | 137 | 272 | 367 | 8.22e-15 | 70.1 |
MS.gene87439.t1 | AT3G06380 | 49.351 | 77 | 35 | 3 | 61 | 137 | 204 | 276 | 3.31e-14 | 67.8 |
MS.gene87439.t1 | AT3G06380 | 49.351 | 77 | 35 | 3 | 61 | 137 | 296 | 368 | 5.92e-14 | 67.8 |
MS.gene87439.t1 | AT1G47270 | 46.753 | 77 | 37 | 2 | 64 | 137 | 301 | 376 | 9.25e-14 | 67.0 |
MS.gene87439.t1 | AT1G47270 | 46.753 | 77 | 37 | 2 | 64 | 137 | 325 | 400 | 9.89e-14 | 67.0 |
MS.gene87439.t1 | AT1G47270 | 46.753 | 77 | 37 | 2 | 64 | 137 | 326 | 401 | 1.00e-13 | 67.0 |
MS.gene87439.t1 | AT2G47900 | 46.753 | 77 | 38 | 2 | 61 | 137 | 322 | 395 | 4.14e-12 | 62.4 |
MS.gene87439.t1 | AT2G47900 | 46.753 | 77 | 38 | 2 | 61 | 137 | 321 | 394 | 4.21e-12 | 62.4 |
MS.gene87439.t1 | AT2G47900 | 46.753 | 77 | 38 | 2 | 61 | 137 | 321 | 394 | 4.21e-12 | 62.4 |
MS.gene87439.t1 | AT5G18680 | 48.101 | 79 | 34 | 4 | 64 | 137 | 209 | 285 | 5.71e-12 | 61.6 |
MS.gene87439.t1 | AT5G18680 | 48.750 | 80 | 32 | 4 | 64 | 137 | 301 | 377 | 8.90e-12 | 61.6 |
MS.gene87439.t1 | AT1G25280 | 42.353 | 85 | 37 | 2 | 64 | 137 | 172 | 255 | 6.83e-11 | 58.5 |
MS.gene87439.t1 | AT1G25280 | 42.353 | 85 | 37 | 2 | 64 | 137 | 172 | 255 | 6.83e-11 | 58.5 |
MS.gene87439.t1 | AT1G25280 | 42.353 | 85 | 37 | 2 | 64 | 137 | 350 | 433 | 8.68e-11 | 58.5 |
MS.gene87439.t1 | AT1G25280 | 48.936 | 47 | 24 | 0 | 15 | 61 | 76 | 122 | 9.94e-11 | 58.5 |
Find 35 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCGTGCAGATCGAAAA+TGG | 0.275180 | 8.3:+26610412 | MS.gene87439:CDS |
ATTACCTGCATCAGTGAAAT+AGG | 0.310386 | 8.3:-26609852 | None:intergenic |
AATTATGTCTAAAAGCAATT+CGG | 0.348399 | 8.3:-26609704 | None:intergenic |
ATTATGTCTAAAAGCAATTC+GGG | 0.401390 | 8.3:-26609703 | None:intergenic |
TTAACACGCCCCATGACATC+AGG | 0.446343 | 8.3:-26610333 | None:intergenic |
ATTTCCTATTTCACTGATGC+AGG | 0.447311 | 8.3:+26609848 | MS.gene87439:CDS |
GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.3:+26609772 | MS.gene87439:CDS |
ATTCGAAGGGTGAGACATCT+TGG | 0.459333 | 8.3:+26609724 | MS.gene87439:CDS |
TGGTTGGTGCCCTGATGTCA+TGG | 0.480715 | 8.3:+26610323 | MS.gene87439:CDS |
ATCCTTCCACATTGCTGAGT+TGG | 0.504963 | 8.3:-26609822 | None:intergenic |
GGTTGGTGCCCTGATGTCAT+GGG | 0.515230 | 8.3:+26610324 | MS.gene87439:CDS |
AATACAACAACAGCACGCAC+AGG | 0.528271 | 8.3:-26609747 | None:intergenic |
ATCGATAAACAATGGCTACA+AGG | 0.537056 | 8.3:-26610380 | None:intergenic |
CTCTCGCAGTTACCAAGGGC+TGG | 0.541801 | 8.3:+26610438 | MS.gene87439:CDS |
GCCCTTGGTAACTGCGAGAG+TGG | 0.543528 | 8.3:-26610435 | None:intergenic |
TCAGATGGCAAAGGCTAGGA+AGG | 0.547032 | 8.3:-26610505 | None:intergenic |
GGCCACTCTCGCAGTTACCA+AGG | 0.570120 | 8.3:+26610433 | MS.gene87439:CDS |
TCAATCAGATGGCAAAGGCT+AGG | 0.587267 | 8.3:-26610509 | None:intergenic |
TACATATGACATCAATCAGA+TGG | 0.588087 | 8.3:-26610520 | None:intergenic |
CGCCAACTCAGCAATGTGGA+AGG | 0.589078 | 8.3:+26609820 | MS.gene87439:CDS |
GCCACTCTCGCAGTTACCAA+GGG | 0.598257 | 8.3:+26610434 | MS.gene87439:CDS |
AAGGCTAGGAAGGCAGAGAG+TGG | 0.603013 | 8.3:-26610495 | None:intergenic |
AAACAATGGCTACAAGGTCA+AGG | 0.605692 | 8.3:-26610374 | None:intergenic |
ATTACAAGATCGATAAACAA+TGG | 0.620701 | 8.3:-26610388 | None:intergenic |
GAGTGGATAAGTGTAGTCCA+TGG | 0.637239 | 8.3:-26610478 | None:intergenic |
TGACATCAATCAGATGGCAA+AGG | 0.647282 | 8.3:-26610514 | None:intergenic |
TAACACGCCCCATGACATCA+GGG | 0.652203 | 8.3:-26610332 | None:intergenic |
CGATGGGATGAACAGTACAA+TGG | 0.659156 | 8.3:+26610303 | MS.gene87439:CDS |
GGTATGTAAATCATGGAGGT+CGG | 0.660173 | 8.3:+26609779 | MS.gene87439:CDS |
TAGAAAAGATGTATTCACCA+TGG | 0.664951 | 8.3:+26610461 | MS.gene87439:CDS |
ATGTCTAAAAGCAATTCGGG+TGG | 0.680227 | 8.3:-26609700 | None:intergenic |
GGGATGAACAGTACAATGGT+TGG | 0.683939 | 8.3:+26610307 | MS.gene87439:CDS |
GTTGGTGCCCTGATGTCATG+GGG | 0.688750 | 8.3:+26610325 | MS.gene87439:CDS |
ATTACGCCAACTCAGCAATG+TGG | 0.692751 | 8.3:+26609816 | MS.gene87439:CDS |
CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.3:+26609775 | MS.gene87439:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATGTCTAAAAGCAATT+CGG | - | chr8.3:26609707-26609726 | None:intergenic | 20.0% |
!! | TACCTTTATACTAAAAAACA+AGG | + | chr8.3:26610275-26610294 | MS.gene87439:intron | 20.0% |
!! | TTGATATTTATACATATGAC+AGG | + | chr8.3:26610091-26610110 | MS.gene87439:intron | 20.0% |
! | AATAAAATTTGACCCGAAAA+TGG | - | chr8.3:26609889-26609908 | None:intergenic | 25.0% |
! | ATAAAATTTGACCCGAAAAT+GGG | - | chr8.3:26609888-26609907 | None:intergenic | 25.0% |
! | ATTACAAGATCGATAAACAA+TGG | - | chr8.3:26610391-26610410 | None:intergenic | 25.0% |
! | ATTATGTCTAAAAGCAATTC+GGG | - | chr8.3:26609706-26609725 | None:intergenic | 25.0% |
! | GAAAAAGTTTCATCAAATAC+TGG | - | chr8.3:26610162-26610181 | None:intergenic | 25.0% |
!! | ATTCCTTTTGTACTTAGATT+TGG | + | chr8.3:26610014-26610033 | MS.gene87439:intron | 25.0% |
!!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr8.3:26610280-26610299 | None:intergenic | 25.0% |
AAAGTTTCATCAAATACTGG+AGG | - | chr8.3:26610159-26610178 | None:intergenic | 30.0% | |
AAGACAACATAAAAAACCTG+AGG | - | chr8.3:26609915-26609934 | None:intergenic | 30.0% | |
AGACAACATAAAAAACCTGA+GGG | - | chr8.3:26609914-26609933 | None:intergenic | 30.0% | |
CTTCTGATATAGCATTGTAT+CGG | - | chr8.3:26609976-26609995 | None:intergenic | 30.0% | |
GCAAAGTATGAATCTTACAT+TGG | - | chr8.3:26610213-26610232 | None:intergenic | 30.0% | |
TAGAAAAGATGTATTCACCA+TGG | + | chr8.3:26610461-26610480 | MS.gene87439:CDS | 30.0% | |
! | ATACATTCTTCACCCATTTT+CGG | + | chr8.3:26609873-26609892 | MS.gene87439:intron | 30.0% |
! | ATCAAGTTGTGAAGCTTATA+AGG | - | chr8.3:26610076-26610095 | None:intergenic | 30.0% |
! | GCTTTTAGACATAATTCGAA+GGG | + | chr8.3:26609711-26609730 | MS.gene87439:CDS | 30.0% |
! | TCAAGTTGTGAAGCTTATAA+GGG | - | chr8.3:26610075-26610094 | None:intergenic | 30.0% |
! | TGCTTTTAGACATAATTCGA+AGG | + | chr8.3:26609710-26609729 | MS.gene87439:CDS | 30.0% |
! | TGTTGTTGTATTTTGTGCTT+CGG | + | chr8.3:26609758-26609777 | MS.gene87439:CDS | 30.0% |
!! | TTAGTATAAAGGTATCGATC+TGG | - | chr8.3:26610269-26610288 | None:intergenic | 30.0% |
!!! | GTCAAATTTTATTTTCCCTC+AGG | + | chr8.3:26609896-26609915 | MS.gene87439:intron | 30.0% |
AAAAAACAAGGCTCTTCGAT+GGG | + | chr8.3:26610287-26610306 | MS.gene87439:intron | 35.0% | |
ACTGTCGTATATAGTGAACT+TGG | - | chr8.3:26610133-26610152 | None:intergenic | 35.0% | |
ATCGATAAACAATGGCTACA+AGG | - | chr8.3:26610383-26610402 | None:intergenic | 35.0% | |
ATTACCTGCATCAGTGAAAT+AGG | - | chr8.3:26609855-26609874 | None:intergenic | 35.0% | |
ATTTCCTATTTCACTGATGC+AGG | + | chr8.3:26609848-26609867 | MS.gene87439:CDS | 35.0% | |
CATTGTATCGGATGATTAGA+GGG | - | chr8.3:26609964-26609983 | None:intergenic | 35.0% | |
CGATACAATGCTATATCAGA+AGG | + | chr8.3:26609974-26609993 | MS.gene87439:intron | 35.0% | |
CGGGCTATTTATACACATAA+AGG | - | chr8.3:26609939-26609958 | None:intergenic | 35.0% | |
GCACCAAATCTAAGTACAAA+AGG | - | chr8.3:26610020-26610039 | None:intergenic | 35.0% | |
TAAAAAACAAGGCTCTTCGA+TGG | + | chr8.3:26610286-26610305 | MS.gene87439:intron | 35.0% | |
! | TACATTCTTCACCCATTTTC+GGG | + | chr8.3:26609874-26609893 | MS.gene87439:intron | 35.0% |
AAACAATGGCTACAAGGTCA+AGG | - | chr8.3:26610377-26610396 | None:intergenic | 40.0% | |
ATGTCTAAAAGCAATTCGGG+TGG | - | chr8.3:26609703-26609722 | None:intergenic | 40.0% | |
CATACTTTGCAAGCCTATCA+AGG | + | chr8.3:26610223-26610242 | MS.gene87439:intron | 40.0% | |
CTTCGGTATGTAAATCATGG+AGG | + | chr8.3:26609775-26609794 | MS.gene87439:CDS | 40.0% | |
GCATTGTATCGGATGATTAG+AGG | - | chr8.3:26609965-26609984 | None:intergenic | 40.0% | |
GGTATGTAAATCATGGAGGT+CGG | + | chr8.3:26609779-26609798 | MS.gene87439:CDS | 40.0% | |
GTGCTTCGGTATGTAAATCA+TGG | + | chr8.3:26609772-26609791 | MS.gene87439:CDS | 40.0% | |
GTTGTGAAGCTTATAAGGGA+TGG | - | chr8.3:26610071-26610090 | None:intergenic | 40.0% | |
TATCGGATGATTAGAGGGAA+CGG | - | chr8.3:26609959-26609978 | None:intergenic | 40.0% | |
TTTCTCGTGCAGATCGAAAA+TGG | + | chr8.3:26610412-26610431 | MS.gene87439:CDS | 40.0% | |
AATACAACAACAGCACGCAC+AGG | - | chr8.3:26609750-26609769 | None:intergenic | 45.0% | |
ATCCTTCCACATTGCTGAGT+TGG | - | chr8.3:26609825-26609844 | None:intergenic | 45.0% | |
ATCGGATGATTAGAGGGAAC+GGG | - | chr8.3:26609958-26609977 | None:intergenic | 45.0% | |
ATTACGCCAACTCAGCAATG+TGG | + | chr8.3:26609816-26609835 | MS.gene87439:CDS | 45.0% | |
ATTCGAAGGGTGAGACATCT+TGG | + | chr8.3:26609724-26609743 | MS.gene87439:CDS | 45.0% | |
CGATGGGATGAACAGTACAA+TGG | + | chr8.3:26610303-26610322 | MS.gene87439:CDS | 45.0% | |
GAGTGGATAAGTGTAGTCCA+TGG | - | chr8.3:26610481-26610500 | None:intergenic | 45.0% | |
GGGATGAACAGTACAATGGT+TGG | + | chr8.3:26610307-26610326 | MS.gene87439:CDS | 45.0% | |
! | ACATCTTTTCTACCAGCCCT+TGG | - | chr8.3:26610453-26610472 | None:intergenic | 45.0% |
!! | TAAAGGTATCGATCTGGCCT+TGG | - | chr8.3:26610263-26610282 | None:intergenic | 45.0% |
GCAAGCCTATCAAGGCTACA+CGG | + | chr8.3:26610231-26610250 | MS.gene87439:intron | 50.0% | |
TAACACGCCCCATGACATCA+GGG | - | chr8.3:26610335-26610354 | None:intergenic | 50.0% | |
TCAGATGGCAAAGGCTAGGA+AGG | - | chr8.3:26610508-26610527 | None:intergenic | 50.0% | |
TTAACACGCCCCATGACATC+AGG | - | chr8.3:26610336-26610355 | None:intergenic | 50.0% | |
TTTCCCTTCAGTGCAGGTGA+CGG | - | chr8.3:26610186-26610205 | None:intergenic | 50.0% | |
! | GGATGTTTTCCCTTCAGTGC+AGG | - | chr8.3:26610192-26610211 | None:intergenic | 50.0% |
! | TCAGTCCGTGTAGCCTTGAT+AGG | - | chr8.3:26610239-26610258 | None:intergenic | 50.0% |
AAGGCTAGGAAGGCAGAGAG+TGG | - | chr8.3:26610498-26610517 | None:intergenic | 55.0% | |
CGCCAACTCAGCAATGTGGA+AGG | + | chr8.3:26609820-26609839 | MS.gene87439:CDS | 55.0% | |
GCCACTCTCGCAGTTACCAA+GGG | + | chr8.3:26610434-26610453 | MS.gene87439:CDS | 55.0% | |
TCTCCGTCACCTGCACTGAA+GGG | + | chr8.3:26610180-26610199 | MS.gene87439:intron | 55.0% | |
TTCTCCGTCACCTGCACTGA+AGG | + | chr8.3:26610179-26610198 | MS.gene87439:intron | 55.0% | |
! | GGTTGGTGCCCTGATGTCAT+GGG | + | chr8.3:26610324-26610343 | MS.gene87439:CDS | 55.0% |
! | GTTGGTGCCCTGATGTCATG+GGG | + | chr8.3:26610325-26610344 | MS.gene87439:CDS | 55.0% |
! | TGGTTGGTGCCCTGATGTCA+TGG | + | chr8.3:26610323-26610342 | MS.gene87439:CDS | 55.0% |
CTCTCGCAGTTACCAAGGGC+TGG | + | chr8.3:26610438-26610457 | MS.gene87439:CDS | 60.0% | |
GGCCACTCTCGCAGTTACCA+AGG | + | chr8.3:26610433-26610452 | MS.gene87439:CDS | 60.0% | |
! | AGGCTACACGGACTGAGCCA+AGG | + | chr8.3:26610243-26610262 | MS.gene87439:intron | 60.0% |
! | GCCCTTGGTAACTGCGAGAG+TGG | - | chr8.3:26610438-26610457 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 26609687 | 26610527 | 26609687 | ID=MS.gene87439 |
chr8.3 | mRNA | 26609687 | 26610527 | 26609687 | ID=MS.gene87439.t1;Parent=MS.gene87439 |
chr8.3 | exon | 26609687 | 26609869 | 26609687 | ID=MS.gene87439.t1.exon1;Parent=MS.gene87439.t1 |
chr8.3 | CDS | 26609687 | 26609869 | 26609687 | ID=cds.MS.gene87439.t1;Parent=MS.gene87439.t1 |
chr8.3 | exon | 26610297 | 26610527 | 26610297 | ID=MS.gene87439.t1.exon2;Parent=MS.gene87439.t1 |
chr8.3 | CDS | 26610297 | 26610527 | 26610297 | ID=cds.MS.gene87439.t1;Parent=MS.gene87439.t1 |
Gene Sequence |
Protein sequence |