AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87440.t1 MTR_8g077650 84.046 351 18 2 1 331 1 333 0.0 579
MS.gene87440.t1 MTR_8g077195 54.974 382 110 9 3 331 37 409 2.12e-119 350
MS.gene87440.t1 MTR_5g020580 48.724 392 123 12 3 331 37 413 2.87e-104 312
MS.gene87440.t1 MTR_8g077675 50.785 382 111 12 3 326 32 394 2.56e-98 296
MS.gene87440.t1 MTR_8g077620 50.000 376 106 12 3 324 36 383 5.67e-95 287
MS.gene87440.t1 MTR_1g022370 41.243 354 153 11 22 331 77 419 2.47e-66 214
MS.gene87440.t1 MTR_8g077640 42.210 353 129 9 1 324 77 383 6.48e-64 207
MS.gene87440.t1 MTR_2g007930 37.632 380 161 13 14 326 49 419 6.38e-57 190
MS.gene87440.t1 MTR_2g020280 35.405 370 168 10 12 326 32 385 8.22e-54 181
MS.gene87440.t1 MTR_1g098790 36.623 385 163 14 14 326 48 423 2.09e-52 178
MS.gene87440.t1 MTR_1g088960 33.422 374 188 12 3 326 32 394 2.30e-50 172
MS.gene87440.t1 MTR_2g020280 37.086 302 143 8 56 326 1 286 2.68e-47 161
MS.gene87440.t1 MTR_2g076200 35.714 350 145 12 22 326 49 363 1.33e-45 159
MS.gene87440.t1 MTR_2g076210 33.696 368 163 13 7 326 25 359 3.16e-38 139
MS.gene87440.t1 MTR_0210s0010 42.708 96 43 3 44 139 15 98 6.08e-15 70.5
MS.gene87440.t1 MTR_1g023800 40.000 115 38 6 3 92 37 145 1.12e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87440.t1 AT2G18280 42.520 381 147 11 3 331 30 390 3.73e-78 244
MS.gene87440.t1 AT2G18280 42.520 381 147 11 3 331 30 390 3.73e-78 244
MS.gene87440.t1 AT1G47270 39.178 365 161 11 12 331 37 385 2.10e-65 211
MS.gene87440.t1 AT1G47270 39.178 365 161 11 12 331 62 410 2.86e-65 211
MS.gene87440.t1 AT1G47270 39.178 365 161 11 12 331 61 409 3.17e-65 211
MS.gene87440.t1 AT1G25280 36.923 390 163 13 14 326 54 437 6.08e-58 193
MS.gene87440.t1 AT2G47900 37.265 373 163 13 9 326 42 398 1.07e-55 186
MS.gene87440.t1 AT2G47900 37.265 373 163 13 9 326 42 398 1.07e-55 186
MS.gene87440.t1 AT2G47900 37.166 374 163 13 9 326 42 399 1.51e-55 186
MS.gene87440.t1 AT5G18680 38.585 311 151 10 41 326 86 381 3.18e-53 179
MS.gene87440.t1 AT1G76900 35.766 411 157 15 11 326 49 447 2.35e-51 176
MS.gene87440.t1 AT1G76900 35.766 411 157 15 11 326 49 447 2.35e-51 176
MS.gene87440.t1 AT1G76900 35.766 411 157 15 11 326 49 447 2.35e-51 176
MS.gene87440.t1 AT3G06380 36.424 302 161 10 44 326 83 372 7.09e-51 173
MS.gene87440.t1 AT1G43640 34.987 383 168 15 14 326 50 421 2.41e-48 168
MS.gene87440.t1 AT5G18680 37.417 302 149 10 50 326 3 289 5.36e-48 163
MS.gene87440.t1 AT1G43640 37.690 329 148 13 44 326 38 355 1.84e-46 161
MS.gene87440.t1 AT3G06380 35.764 288 154 10 58 326 5 280 5.49e-46 158
MS.gene87440.t1 AT1G53320 36.752 351 146 11 22 326 51 371 2.01e-44 156
MS.gene87440.t1 AT1G25280 39.256 242 111 7 119 326 20 259 7.64e-39 139
MS.gene87440.t1 AT1G25280 39.256 242 111 7 119 326 20 259 7.64e-39 139

Find 87 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTGCTTCACTGAAAT+AGG 0.203520 8.3:-26612942 None:intergenic
ATCCGGCTTGATCGACAATT+TGG 0.228814 8.3:-26613740 None:intergenic
TATGTTGATCGACAATTCTT+TGG 0.237593 8.3:-26613788 None:intergenic
CACTTTACCAGCACATTTGC+TGG 0.239605 8.3:-26613551 None:intergenic
TTTCAGTTGTACTTAGGTTT+GGG 0.243955 8.3:+26613124 MS.gene87440:CDS
ATGATGCAATGTATTCTTCT+TGG 0.252868 8.3:-26613869 None:intergenic
ATCTTACAGTTTGGAAAGAT+TGG 0.311656 8.3:+26614223 MS.gene87440:CDS
GCGGTTAATAACAACTTATC+AGG 0.340398 8.3:-26613469 None:intergenic
CCCTGTTGAATAGGTTCAAC+TGG 0.343357 8.3:-26612813 None:intergenic
GTTCAAACTTGCTGTCCTAT+TGG 0.349852 8.3:-26613491 None:intergenic
ATCCGATGCAGTGCTTTATT+CGG 0.354028 8.3:+26613068 MS.gene87440:CDS
TCCAGTTGAACCTATTCAAC+AGG 0.363499 8.3:+26612812 MS.gene87440:CDS
CTGTCTCAGCTATTCATAAA+GGG 0.367799 8.3:+26613903 MS.gene87440:CDS
ACCCATTGTCCCTGTTGAAT+AGG 0.369804 8.3:-26612822 None:intergenic
ATTACCCTTTCTTGCTCCTC+AGG 0.370302 8.3:-26614202 None:intergenic
GAAAGGGTAATCTTACAGTT+TGG 0.371540 8.3:+26614214 MS.gene87440:CDS
ATAACTTATTATTAAATATC+CGG 0.376545 8.3:-26613757 None:intergenic
ACAATGGGTAAGTCTGCTTT+TGG 0.377762 8.3:+26612836 MS.gene87440:CDS
CCAAGCCTTTGCCATCTGCT+TGG 0.383935 8.3:+26614291 MS.gene87440:CDS
TCAAAAGCAAGGCTCCTAGA+TGG 0.387776 8.3:+26614071 MS.gene87440:CDS
CCTGTCTCAGCTATTCATAA+AGG 0.399999 8.3:+26613902 MS.gene87440:CDS
TCAGTCCTGGTAGCTCTGAT+TGG 0.423592 8.3:-26614033 None:intergenic
AGTTGTTATTAACCGCCAAT+AGG 0.427507 8.3:+26613476 MS.gene87440:CDS
TCTTCTTGGCGAGTGGACTT+TGG 0.427811 8.3:-26613855 None:intergenic
CATCGGATGATCACGGGGAC+CGG 0.448035 8.3:-26613053 None:intergenic
GGGTTGGCACCTAGACTTCA+AGG 0.451538 8.3:+26614108 MS.gene87440:CDS
ACCTATTCAACAGGGACAAT+GGG 0.455866 8.3:+26612821 MS.gene87440:CDS
GAGGTAAAGATGTCAATGTC+AGG 0.460528 8.3:-26613934 None:intergenic
GAAAACGTTTCATCAGATAC+TGG 0.463759 8.3:-26613956 None:intergenic
TTCTCCTTCGCCAACACTGA+AGG 0.471471 8.3:+26613976 MS.gene87440:CDS
TAACACATCCCTTGAAGTCT+AGG 0.482014 8.3:-26614117 None:intergenic
TTGCACTGCTCATCCCATCT+AGG 0.486778 8.3:-26614085 None:intergenic
TTTCTCCTGAGGAGCAAGAA+AGG 0.491680 8.3:+26614197 MS.gene87440:CDS
TGGCGAGTGGACTTTGGAAA+TGG 0.496588 8.3:-26613849 None:intergenic
GCAGATGGCAAAGGCTTGGA+AGG 0.500254 8.3:-26614287 None:intergenic
CCTTTATGAATAGCTGAGAC+AGG 0.505478 8.3:-26613902 None:intergenic
GTGATCCTTTCTCTTTGCTG+AGG 0.510106 8.3:-26612915 None:intergenic
CAAACTTGCTGTCCTATTGG+CGG 0.512359 8.3:-26613488 None:intergenic
TTCAGTTGTACTTAGGTTTG+GGG 0.513779 8.3:+26613125 MS.gene87440:CDS
CTCCTTCGCCAACACTGAAG+GGG 0.516445 8.3:+26613978 MS.gene87440:CDS
CCAAGCAGATGGCAAAGGCT+TGG 0.517089 8.3:-26614291 None:intergenic
GCACTGCATCGGATGATCAC+GGG 0.519512 8.3:-26613059 None:intergenic
CAAAAGCAAGGCTCCTAGAT+GGG 0.521682 8.3:+26614072 MS.gene87440:CDS
TCTCCTTCGCCAACACTGAA+GGG 0.525573 8.3:+26613977 MS.gene87440:CDS
GTCAAGGGCTCACTCAGTCC+TGG 0.526580 8.3:-26614046 None:intergenic
AAAGGCAGAAGCCAAGCAGA+TGG 0.530004 8.3:-26614302 None:intergenic
GGTTCAACTGGAGTTACATC+GGG 0.530037 8.3:-26612801 None:intergenic
GCAAGCCAATCAGAGCTACC+AGG 0.536157 8.3:+26614028 MS.gene87440:CDS
ATCGGATGATCACGGGGACC+GGG 0.536395 8.3:-26613052 None:intergenic
ATAAGTTTAGGGGCCAGAAA+AGG 0.544807 8.3:-26614320 None:intergenic
TTCCCCTTCAGTGTTGGCGA+AGG 0.546113 8.3:-26613980 None:intergenic
TTGAACCTCAGCAAAGAGAA+AGG 0.547330 8.3:+26612910 MS.gene87440:CDS
AACCTATTCAACAGGGACAA+TGG 0.551901 8.3:+26612820 MS.gene87440:CDS
GATCGACAATTCTTTGGAGA+CGG 0.555282 8.3:-26613782 None:intergenic
TTCTCCTGAGGAGCAAGAAA+GGG 0.559662 8.3:+26614198 MS.gene87440:CDS
AGAAGCCAAGCAGATGGCAA+AGG 0.563592 8.3:-26614296 None:intergenic
CGATGCAGTGCTTTATTCGG+AGG 0.578350 8.3:+26613071 MS.gene87440:CDS
AAGAATTGTCGATCAACATA+CGG 0.580042 8.3:+26613791 MS.gene87440:CDS
AGGTTCAACTGGAGTTACAT+CGG 0.583414 8.3:-26612802 None:intergenic
AACCAAATTGTCGATCAAGC+CGG 0.584672 8.3:+26613738 MS.gene87440:CDS
TCTCAAGCCAGCAAATGTGC+TGG 0.586754 8.3:+26613544 MS.gene87440:CDS
TGAGGTTCAACAGCACGCGC+AGG 0.587298 8.3:-26612897 None:intergenic
AAGGCTTGGAAGGCGGAGAG+TGG 0.587325 8.3:-26614277 None:intergenic
CTAACAAGACGGCTACATGT+TGG 0.589236 8.3:-26613824 None:intergenic
AGCACTGCATCGGATGATCA+CGG 0.590485 8.3:-26613060 None:intergenic
TAGATGGGATGAGCAGTGCA+AGG 0.593291 8.3:+26614087 MS.gene87440:CDS
CTCCGAATAAAGCACTGCAT+CGG 0.601688 8.3:-26613070 None:intergenic
TTGAAGAGCTCGAGACATCT+CGG 0.605518 8.3:+26612874 MS.gene87440:CDS
TGTCTCAGCTATTCATAAAG+GGG 0.608301 8.3:+26613904 MS.gene87440:CDS
TAGCTCTGATTGGCTTGCAG+AGG 0.609870 8.3:-26614023 None:intergenic
GCCCTTGACACTCAAAAGCA+AGG 0.612932 8.3:+26614060 MS.gene87440:CDS
GGGATGAGCAGTGCAAGGGT+TGG 0.613229 8.3:+26614092 MS.gene87440:CDS
TCTCGAGCTCTTCAACCCTA+CGG 0.616335 8.3:-26612866 None:intergenic
GTCTCATAATGTTTCTCCTG+AGG 0.621196 8.3:+26614186 MS.gene87440:CDS
CACTGCATCGGATGATCACG+GGG 0.621816 8.3:-26613058 None:intergenic
AATGTATTCTTCTTGGCGAG+TGG 0.627171 8.3:-26613862 None:intergenic
TGGAAATGGTGCTAACAAGA+CGG 0.633735 8.3:-26613835 None:intergenic
AGATGGGATGAGCAGTGCAA+GGG 0.635701 8.3:+26614088 MS.gene87440:CDS
TCAGGAGAAACATTATGAGA+CGG 0.641318 8.3:-26614184 None:intergenic
AGGTAAAGATGTCAATGTCA+GGG 0.644230 8.3:-26613933 None:intergenic
GATGGCAAAGGCTTGGAAGG+CGG 0.644428 8.3:-26614284 None:intergenic
GAGTGGATAAGAGTAGTCCA+TGG 0.657388 8.3:-26614260 None:intergenic
GGTTGGCACCTAGACTTCAA+GGG 0.671549 8.3:+26614109 MS.gene87440:CDS
AACGTTTCATCAGATACTGG+AGG 0.677184 8.3:-26613953 None:intergenic
CTTCAAGGGATGTGTTACAG+TGG 0.682112 8.3:+26614123 MS.gene87440:CDS
TGGAACAGATATATTCACCA+TGG 0.684144 8.3:+26614243 MS.gene87440:CDS
CCAGTTGAACCTATTCAACA+GGG 0.686684 8.3:+26612813 MS.gene87440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATTATTAAATATC+CGG - chr8.3:26613760-26613779 None:intergenic 10.0%
!! AATAGAACATAAAAAATATG+AGG - chr8.3:26613012-26613031 None:intergenic 15.0%
!! ATAGAACATAAAAAATATGA+GGG - chr8.3:26613011-26613030 None:intergenic 15.0%
! CATAAAAAATATGAGGGAAA+AGG - chr8.3:26613005-26613024 None:intergenic 25.0%
! GAAAAATCGATAGAATAGAA+GGG - chr8.3:26613610-26613629 None:intergenic 25.0%
! TGAAAAATCGATAGAATAGA+AGG - chr8.3:26613611-26613630 None:intergenic 25.0%
!! ATCAAGTTGTGAAGATTATA+AGG - chr8.3:26613643-26613662 None:intergenic 25.0%
!! TCAAGTTGTGAAGATTATAA+GGG - chr8.3:26613642-26613661 None:intergenic 25.0%
!! TCACAACTTGATTTTTATAC+AGG + chr8.3:26613651-26613670 MS.gene87440:intron 25.0%
AAGAATTGTCGATCAACATA+CGG + chr8.3:26613791-26613810 MS.gene87440:CDS 30.0%
ATCTTACAGTTTGGAAAGAT+TGG + chr8.3:26614223-26614242 MS.gene87440:CDS 30.0%
ATGATGCAATGTATTCTTCT+TGG - chr8.3:26613872-26613891 None:intergenic 30.0%
ATTACTTGCTTCACTGAAAT+AGG - chr8.3:26612945-26612964 None:intergenic 30.0%
CAAGTTGTGAAGATTATAAG+GGG - chr8.3:26613641-26613660 None:intergenic 30.0%
CATTGTCTTAGAAAAAGAGA+TGG - chr8.3:26613180-26613199 None:intergenic 30.0%
TAGAAAAAGAGATGGAATGT+TGG - chr8.3:26613172-26613191 None:intergenic 30.0%
TATGAGGGAAAAGGATAAAT+TGG - chr8.3:26612996-26613015 None:intergenic 30.0%
TATGTTGATCGACAATTCTT+TGG - chr8.3:26613791-26613810 None:intergenic 30.0%
TTTCAGTTGTACTTAGGTTT+GGG + chr8.3:26613124-26613143 MS.gene87440:CDS 30.0%
! CAAACTTTTCAGTTGTACTT+AGG + chr8.3:26613118-26613137 MS.gene87440:CDS 30.0%
! TTTTATACAGGTCCAGTTTT+GGG + chr8.3:26613663-26613682 MS.gene87440:intron 30.0%
! TTTTCAGTTGTACTTAGGTT+TGG + chr8.3:26613123-26613142 MS.gene87440:CDS 30.0%
! TTTTTATACAGGTCCAGTTT+TGG + chr8.3:26613662-26613681 MS.gene87440:intron 30.0%
!! ACAAACTTGCTCTAAAGTTA+TGG + chr8.3:26613275-26613294 MS.gene87440:intron 30.0%
!! CAAACTTGCTCTAAAGTTAT+GGG + chr8.3:26613276-26613295 MS.gene87440:intron 30.0%
!!! GTGTTTAAGCATCTCTTTTT+TGG + chr8.3:26613416-26613435 MS.gene87440:intron 30.0%
AGAGAGAGAGAGAGAAAAAT+TGG - chr8.3:26613370-26613389 None:intergenic 35.0%
AGGTAAAGATGTCAATGTCA+GGG - chr8.3:26613936-26613955 None:intergenic 35.0%
CTGTCTCAGCTATTCATAAA+GGG + chr8.3:26613903-26613922 MS.gene87440:CDS 35.0%
GAAAACGTTTCATCAGATAC+TGG - chr8.3:26613959-26613978 None:intergenic 35.0%
GAAAGGGTAATCTTACAGTT+TGG + chr8.3:26614214-26614233 MS.gene87440:CDS 35.0%
GCGGTTAATAACAACTTATC+AGG - chr8.3:26613472-26613491 None:intergenic 35.0%
GTGAAGATTATAAGGGGATA+TGG - chr8.3:26613635-26613654 None:intergenic 35.0%
GTTTGCTTGTACTTGTATAG+CGG + chr8.3:26613438-26613457 MS.gene87440:intron 35.0%
TAAATTATTCGCCCACTTTC+TGG + chr8.3:26612964-26612983 MS.gene87440:intron 35.0%
TCAGGAGAAACATTATGAGA+CGG - chr8.3:26614187-26614206 None:intergenic 35.0%
TGGAACAGATATATTCACCA+TGG + chr8.3:26614243-26614262 MS.gene87440:CDS 35.0%
TGTCTCAGCTATTCATAAAG+GGG + chr8.3:26613904-26613923 MS.gene87440:CDS 35.0%
TTCAGTTGTACTTAGGTTTG+GGG + chr8.3:26613125-26613144 MS.gene87440:CDS 35.0%
! AATTGGATTAGACCAGAAAG+TGG - chr8.3:26612979-26612998 None:intergenic 35.0%
! AGTTGTTATTAACCGCCAAT+AGG + chr8.3:26613476-26613495 MS.gene87440:CDS 35.0%
! ATTGGATTAGACCAGAAAGT+GGG - chr8.3:26612978-26612997 None:intergenic 35.0%
AACCAAATTGTCGATCAAGC+CGG + chr8.3:26613738-26613757 MS.gene87440:CDS 40.0%
AACCTATTCAACAGGGACAA+TGG + chr8.3:26612820-26612839 MS.gene87440:CDS 40.0%
AACGTTTCATCAGATACTGG+AGG - chr8.3:26613956-26613975 None:intergenic 40.0%
AATGTATTCTTCTTGGCGAG+TGG - chr8.3:26613865-26613884 None:intergenic 40.0%
ACCTATTCAACAGGGACAAT+GGG + chr8.3:26612821-26612840 MS.gene87440:CDS 40.0%
AGGTTCAACTGGAGTTACAT+CGG - chr8.3:26612805-26612824 None:intergenic 40.0%
CCAGTTGAACCTATTCAACA+GGG + chr8.3:26612813-26612832 MS.gene87440:CDS 40.0%
CCTGTCTCAGCTATTCATAA+AGG + chr8.3:26613902-26613921 MS.gene87440:CDS 40.0%
CCTTTATGAATAGCTGAGAC+AGG - chr8.3:26613905-26613924 None:intergenic 40.0%
CTTCATGTGTATGAATAGCC+CGG + chr8.3:26613034-26613053 MS.gene87440:intron 40.0%
GAGGTAAAGATGTCAATGTC+AGG - chr8.3:26613937-26613956 None:intergenic 40.0%
GTCTCATAATGTTTCTCCTG+AGG + chr8.3:26614186-26614205 MS.gene87440:CDS 40.0%
TAACACATCCCTTGAAGTCT+AGG - chr8.3:26614120-26614139 None:intergenic 40.0%
TCCAGTTGAACCTATTCAAC+AGG + chr8.3:26612812-26612831 MS.gene87440:CDS 40.0%
TTGAACCTCAGCAAAGAGAA+AGG + chr8.3:26612910-26612929 MS.gene87440:CDS 40.0%
! ACAATGGGTAAGTCTGCTTT+TGG + chr8.3:26612836-26612855 MS.gene87440:CDS 40.0%
! ATCCGATGCAGTGCTTTATT+CGG + chr8.3:26613068-26613087 MS.gene87440:CDS 40.0%
! GATCGACAATTCTTTGGAGA+CGG - chr8.3:26613785-26613804 None:intergenic 40.0%
! GCTTTTGGACTTAATCCGTA+GGG + chr8.3:26612851-26612870 MS.gene87440:CDS 40.0%
! TGCTTTTGGACTTAATCCGT+AGG + chr8.3:26612850-26612869 MS.gene87440:CDS 40.0%
! TGGAAATGGTGCTAACAAGA+CGG - chr8.3:26613838-26613857 None:intergenic 40.0%
! TGGTAAAGTGAGGCAAGTTT+TGG + chr8.3:26613564-26613583 MS.gene87440:intron 40.0%
! TTTGGGGCCATGTAAGTATT+CGG + chr8.3:26613141-26613160 MS.gene87440:intron 40.0%
!! GTTCAAACTTGCTGTCCTAT+TGG - chr8.3:26613494-26613513 None:intergenic 40.0%
!! TAAAGTGAGGCAAGTTTTGG+TGG + chr8.3:26613567-26613586 MS.gene87440:intron 40.0%
ACCCATTGTCCCTGTTGAAT+AGG - chr8.3:26612825-26612844 None:intergenic 45.0%
ATTACCCTTTCTTGCTCCTC+AGG - chr8.3:26614205-26614224 None:intergenic 45.0%
CAAAAGCAAGGCTCCTAGAT+GGG + chr8.3:26614072-26614091 MS.gene87440:CDS 45.0%
CACTTTACCAGCACATTTGC+TGG - chr8.3:26613554-26613573 None:intergenic 45.0%
CCCTGTTGAATAGGTTCAAC+TGG - chr8.3:26612816-26612835 None:intergenic 45.0%
CGGGCTATTCATACACATGA+AGG - chr8.3:26613036-26613055 None:intergenic 45.0%
CTAACAAGACGGCTACATGT+TGG - chr8.3:26613827-26613846 None:intergenic 45.0%
CTTCAAGGGATGTGTTACAG+TGG + chr8.3:26614123-26614142 MS.gene87440:CDS 45.0%
GAGTGGATAAGAGTAGTCCA+TGG - chr8.3:26614263-26614282 None:intergenic 45.0%
GGAGCAACCGAATACTTACA+TGG - chr8.3:26613151-26613170 None:intergenic 45.0%
GGTTCAACTGGAGTTACATC+GGG - chr8.3:26612804-26612823 None:intergenic 45.0%
GTGATCCTTTCTCTTTGCTG+AGG - chr8.3:26612918-26612937 None:intergenic 45.0%
TCAAAAGCAAGGCTCCTAGA+TGG + chr8.3:26614071-26614090 MS.gene87440:CDS 45.0%
TTCTCCTGAGGAGCAAGAAA+GGG + chr8.3:26614198-26614217 MS.gene87440:CDS 45.0%
TTGAAGAGCTCGAGACATCT+CGG + chr8.3:26612874-26612893 MS.gene87440:CDS 45.0%
TTTCTCCTGAGGAGCAAGAA+AGG + chr8.3:26614197-26614216 MS.gene87440:CDS 45.0%
! ATCCGGCTTGATCGACAATT+TGG - chr8.3:26613743-26613762 None:intergenic 45.0%
! GCAAATGTGCTGGTAAAGTG+AGG + chr8.3:26613554-26613573 MS.gene87440:intron 45.0%
! TGAGTTTTCCCCTTCAGTGT+TGG - chr8.3:26613989-26614008 None:intergenic 45.0%
!! AGCCTTGCTTTTGAGTGTCA+AGG - chr8.3:26614065-26614084 None:intergenic 45.0%
!! CAAACTTGCTGTCCTATTGG+CGG - chr8.3:26613491-26613510 None:intergenic 45.0%
!! CTCCGAATAAAGCACTGCAT+CGG - chr8.3:26613073-26613092 None:intergenic 45.0%
!! GAACTTGTTGAGCCCAAAAC+TGG - chr8.3:26613678-26613697 None:intergenic 45.0%
!! GCCTTGCTTTTGAGTGTCAA+GGG - chr8.3:26614064-26614083 None:intergenic 45.0%
AAAGGCAGAAGCCAAGCAGA+TGG - chr8.3:26614305-26614324 None:intergenic 50.0%
AGAAGCCAAGCAGATGGCAA+AGG - chr8.3:26614299-26614318 None:intergenic 50.0%
AGATGGGATGAGCAGTGCAA+GGG + chr8.3:26614088-26614107 MS.gene87440:CDS 50.0%
AGCACTGCATCGGATGATCA+CGG - chr8.3:26613063-26613082 None:intergenic 50.0%
GCCCTTGACACTCAAAAGCA+AGG + chr8.3:26614060-26614079 MS.gene87440:CDS 50.0%
GGTTGAACTGCAGCATCATC+TGG - chr8.3:26613722-26613741 None:intergenic 50.0%
GGTTGGCACCTAGACTTCAA+GGG + chr8.3:26614109-26614128 MS.gene87440:CDS 50.0%
TAGATGGGATGAGCAGTGCA+AGG + chr8.3:26614087-26614106 MS.gene87440:CDS 50.0%
TCTCAAGCCAGCAAATGTGC+TGG + chr8.3:26613544-26613563 MS.gene87440:CDS 50.0%
TCTCCTTCGCCAACACTGAA+GGG + chr8.3:26613977-26613996 MS.gene87440:CDS 50.0%
TCTCGAGCTCTTCAACCCTA+CGG - chr8.3:26612869-26612888 None:intergenic 50.0%
TGAACTGCAGCATCATCTGG+AGG - chr8.3:26613719-26613738 None:intergenic 50.0%
TTCTCCTTCGCCAACACTGA+AGG + chr8.3:26613976-26613995 MS.gene87440:CDS 50.0%
TTGCACTGCTCATCCCATCT+AGG - chr8.3:26614088-26614107 None:intergenic 50.0%
! CGATGCAGTGCTTTATTCGG+AGG + chr8.3:26613071-26613090 MS.gene87440:CDS 50.0%
! TCTTCTTGGCGAGTGGACTT+TGG - chr8.3:26613858-26613877 None:intergenic 50.0%
! TGCTTGGCTTCTGCCTTTTC+TGG + chr8.3:26614307-26614326 MS.gene87440:CDS 50.0%
! TGGCGAGTGGACTTTGGAAA+TGG - chr8.3:26613852-26613871 None:intergenic 50.0%
!! TAGCTCTGATTGGCTTGCAG+AGG - chr8.3:26614026-26614045 None:intergenic 50.0%
!! TCAGTCCTGGTAGCTCTGAT+TGG - chr8.3:26614036-26614055 None:intergenic 50.0%
CACTGCATCGGATGATCACG+GGG - chr8.3:26613061-26613080 None:intergenic 55.0%
CCAAGCAGATGGCAAAGGCT+TGG - chr8.3:26614294-26614313 None:intergenic 55.0%
CCAAGCCTTTGCCATCTGCT+TGG + chr8.3:26614291-26614310 MS.gene87440:CDS 55.0%
CTCCTTCGCCAACACTGAAG+GGG + chr8.3:26613978-26613997 MS.gene87440:CDS 55.0%
GATGGCAAAGGCTTGGAAGG+CGG - chr8.3:26614287-26614306 None:intergenic 55.0%
GCAAGCCAATCAGAGCTACC+AGG + chr8.3:26614028-26614047 MS.gene87440:CDS 55.0%
GCACTGCATCGGATGATCAC+GGG - chr8.3:26613062-26613081 None:intergenic 55.0%
GCAGATGGCAAAGGCTTGGA+AGG - chr8.3:26614290-26614309 None:intergenic 55.0%
! GGGTTGGCACCTAGACTTCA+AGG + chr8.3:26614108-26614127 MS.gene87440:CDS 55.0%
!! TTCCCCTTCAGTGTTGGCGA+AGG - chr8.3:26613983-26614002 None:intergenic 55.0%
AAGGCTTGGAAGGCGGAGAG+TGG - chr8.3:26614280-26614299 None:intergenic 60.0%
ATCGGATGATCACGGGGACC+GGG - chr8.3:26613055-26613074 None:intergenic 60.0%
CATCGGATGATCACGGGGAC+CGG - chr8.3:26613056-26613075 None:intergenic 60.0%
GGGATGAGCAGTGCAAGGGT+TGG + chr8.3:26614092-26614111 MS.gene87440:CDS 60.0%
GTCAAGGGCTCACTCAGTCC+TGG - chr8.3:26614049-26614068 None:intergenic 60.0%
TGAGGTTCAACAGCACGCGC+AGG - chr8.3:26612900-26612919 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 26612786 26614336 26612786 ID=MS.gene87440
chr8.3 mRNA 26612786 26614336 26612786 ID=MS.gene87440.t1;Parent=MS.gene87440
chr8.3 exon 26612786 26612959 26612786 ID=MS.gene87440.t1.exon1;Parent=MS.gene87440.t1
chr8.3 CDS 26612786 26612959 26612786 ID=cds.MS.gene87440.t1;Parent=MS.gene87440.t1
chr8.3 exon 26613052 26613151 26613052 ID=MS.gene87440.t1.exon2;Parent=MS.gene87440.t1
chr8.3 CDS 26613052 26613151 26613052 ID=cds.MS.gene87440.t1;Parent=MS.gene87440.t1
chr8.3 exon 26613458 26613565 26613458 ID=MS.gene87440.t1.exon3;Parent=MS.gene87440.t1
chr8.3 CDS 26613458 26613565 26613458 ID=cds.MS.gene87440.t1;Parent=MS.gene87440.t1
chr8.3 exon 26613723 26614336 26613723 ID=MS.gene87440.t1.exon4;Parent=MS.gene87440.t1
chr8.3 CDS 26613723 26614336 26613723 ID=cds.MS.gene87440.t1;Parent=MS.gene87440.t1
Gene Sequence

>MS.gene87440

ATGGAAAATGTTGCTCCCGATGTAACTCCAGTTGAACCTATTCAACAGGGACAATGGGTAAGTCTGCTTTTGGACTTAATCCGTAGGGTTGAAGAGCTCGAGACATCTCGGCCTGCGCGTGCTGTTGAACCTCAGCAAAGAGAAAGGATCACATTTCCTATTTCAGTGAAGCAAGTAATAAATTATTCGCCCACTTTCTGGTCTAATCCAATTTATCCTTTTCCCTCATATTTTTTATGTTCTATTTCCTTCATGTGTATGAATAGCCCGGTCCCCGTGATCATCCGATGCAGTGCTTTATTCGGAGGAAGAAAATGAGAGAATCATCACTTCAAACTTTTCAGTTGTACTTAGGTTTGGGGCCATGTAAGTATTCGGTTGCTCCAACATTCCATCTCTTTTTCTAAGACAATGAACATCAATTTTCAAATTTCTAATCTTTGAGTTACTCTTCAAGCTTGCATTCATGACAGTGAATGTTGAATTTCAACAAACTTGCTCTAAAGTTATGGGTTTTATTATTTATTTATTGTCATTCAGATTGTGATCTTTTAAGTTACTCTTCAAGCTTTCATTCATCGCCAATTTTTCTCTCTCTCTCTCTTTTTTTTTTTGCATTTCATGATCTACGTGTTTAAGCATCTCTTTTTTGGTTTGCTTGTACTTGTATAGCGGCGAATGAACCTGATAAGTTGTTATTAACCGCCAATAGGACAGCAAGTTTGAACTTTGTCATATTCTTCGCTGCAGACAATTTCTCTCAAGCCAGCAAATGTGCTGGTAAAGTGAGGCAAGTTTTGGTGGATAGAAACATTTATTCACCCTTCTATTCTATCGATTTTTCATCCATATCCCCTTATAATCTTCACAACTTGATTTTTATACAGGTCCAGTTTTGGGCTCAACAAGTTCTTTCTATACGACAATCAACCTCCAGATGATGCTGCAGTTCAACCAAATTGTCGATCAAGCCGGATATTTAATAATAAGTTATCACCGTCTCCAAAGAATTGTCGATCAACATACGGAAGAATTGCTCCAACATGTAGCCGTCTTGTTAGCACCATTTCCAAAGTCCACTCGCCAAGAAGAATACATTGCATCATGAATTCTATACCTGTCTCAGCTATTCATAAAGGGGAAAATGCCCTGACATTGACATCTTTACCTCCAGTATCTGATGAAACGTTTTCTCCTTCGCCAACACTGAAGGGGAAAACTCAAATGAGAGATTCATCCTCTGCAAGCCAATCAGAGCTACCAGGACTGAGTGAGCCCTTGACACTCAAAAGCAAGGCTCCTAGATGGGATGAGCAGTGCAAGGGTTGGCACCTAGACTTCAAGGGATGTGTTACAGTGGCATCTGTGAAAAACTTTCAATTTGTAGCTGCTGTTGATCCGTCTCATAATGTTTCTCCTGAGGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAACAGATATATTCACCATGGACTACTCTTATCCACTCTCCGCCTTCCAAGCCTTTGCCATCTGCTTGGCTTCTGCCTTTTCTGGCCCCTAA
Protein sequence

>MS.gene87440.t1

MENVAPDVTPVEPIQQGQWVSLLLDLIRRVEELETSRPARAVEPQQRERITFPISVKQPGPRDHPMQCFIRRKKMRESSLQTFQLYLGLGPSANEPDKLLLTANRTASLNFVIFFAADNFSQASKCADDAAVQPNCRSSRIFNNKLSPSPKNCRSTYGRIAPTCSRLVSTISKVHSPRRIHCIMNSIPVSAIHKGENALTLTSLPPVSDETFSPSPTLKGKTQMRDSSSASQSELPGLSEPLTLKSKAPRWDEQCKGWHLDFKGCVTVASVKNFQFVAAVDPSHNVSPEEQERVILQFGKIGTDIFTMDYSYPLSAFQAFAICLASAFSGP