Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87441.t1 | RHN42115.1 | 67.3 | 324 | 14 | 1 | 1 | 232 | 1 | 324 | 5.70E-112 | 413.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87441.t1 | Q6Z2G9 | 26.7 | 419 | 115 | 8 | 1 | 228 | 1 | 418 | 5.5e-23 | 109.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87441.t1 | A0A396GTK9 | 67.3 | 324 | 14 | 1 | 1 | 232 | 1 | 324 | 4.1e-112 | 413.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87441.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87441.t1 | MTR_8g077640 | 84.906 | 159 | 23 | 1 | 74 | 232 | 230 | 387 | 4.27e-96 | 286 |
| MS.gene87441.t1 | MTR_8g077640 | 96.667 | 90 | 3 | 0 | 1 | 90 | 46 | 135 | 9.16e-45 | 154 |
| MS.gene87441.t1 | MTR_8g077195 | 58.400 | 125 | 51 | 1 | 104 | 228 | 279 | 402 | 5.30e-41 | 144 |
| MS.gene87441.t1 | MTR_8g077195 | 66.667 | 93 | 28 | 1 | 1 | 90 | 1 | 93 | 3.08e-31 | 119 |
| MS.gene87441.t1 | MTR_5g020580 | 49.606 | 127 | 61 | 2 | 104 | 228 | 281 | 406 | 1.10e-30 | 117 |
| MS.gene87441.t1 | MTR_5g020580 | 56.842 | 95 | 36 | 2 | 1 | 90 | 1 | 95 | 2.39e-26 | 105 |
| MS.gene87441.t1 | MTR_8g077650 | 51.200 | 125 | 38 | 2 | 104 | 228 | 225 | 326 | 2.11e-29 | 112 |
| MS.gene87441.t1 | MTR_8g077620 | 50.000 | 130 | 42 | 4 | 104 | 228 | 272 | 383 | 8.37e-28 | 109 |
| MS.gene87441.t1 | MTR_8g077620 | 60.870 | 92 | 34 | 1 | 1 | 90 | 1 | 92 | 1.89e-27 | 108 |
| MS.gene87441.t1 | MTR_8g077675 | 61.111 | 90 | 33 | 1 | 1 | 90 | 1 | 88 | 4.83e-27 | 107 |
| MS.gene87441.t1 | MTR_8g077675 | 47.656 | 128 | 58 | 3 | 104 | 228 | 271 | 392 | 1.65e-24 | 100 |
| MS.gene87441.t1 | MTR_1g022370 | 36.715 | 207 | 63 | 6 | 89 | 228 | 207 | 412 | 1.99e-24 | 100 |
| MS.gene87441.t1 | MTR_1g022370 | 43.119 | 109 | 42 | 3 | 1 | 89 | 1 | 109 | 1.29e-16 | 78.6 |
| MS.gene87441.t1 | MTR_2g076200 | 35.135 | 185 | 74 | 3 | 90 | 229 | 179 | 362 | 8.05e-21 | 90.1 |
| MS.gene87441.t1 | MTR_1g088960 | 50.515 | 97 | 44 | 3 | 132 | 228 | 300 | 392 | 2.79e-19 | 85.9 |
| MS.gene87441.t1 | MTR_2g020280 | 52.381 | 84 | 37 | 3 | 145 | 228 | 204 | 284 | 5.10e-18 | 81.3 |
| MS.gene87441.t1 | MTR_2g020280 | 52.381 | 84 | 37 | 3 | 145 | 228 | 303 | 383 | 8.38e-18 | 81.6 |
| MS.gene87441.t1 | MTR_2g007930 | 46.316 | 95 | 44 | 2 | 140 | 228 | 324 | 417 | 2.11e-17 | 80.5 |
| MS.gene87441.t1 | MTR_2g007930 | 40.625 | 96 | 49 | 3 | 1 | 90 | 1 | 94 | 1.16e-13 | 69.7 |
| MS.gene87441.t1 | MTR_1g023800 | 47.312 | 93 | 43 | 3 | 1 | 89 | 1 | 91 | 7.46e-16 | 72.8 |
| MS.gene87441.t1 | MTR_1g098790 | 44.554 | 101 | 43 | 3 | 140 | 228 | 322 | 421 | 7.14e-15 | 73.6 |
| MS.gene87441.t1 | MTR_1g098790 | 37.234 | 94 | 52 | 2 | 1 | 89 | 1 | 92 | 4.29e-12 | 65.1 |
| MS.gene87441.t1 | MTR_2g076210 | 48.235 | 85 | 41 | 2 | 146 | 228 | 274 | 357 | 9.44e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87441.t1 | AT2G18280 | 45.902 | 122 | 60 | 3 | 107 | 228 | 268 | 383 | 1.32e-23 | 97.8 |
| MS.gene87441.t1 | AT2G18280 | 52.747 | 91 | 37 | 2 | 1 | 89 | 1 | 87 | 1.29e-19 | 86.7 |
| MS.gene87441.t1 | AT2G18280 | 45.902 | 122 | 60 | 3 | 107 | 228 | 268 | 383 | 1.32e-23 | 97.8 |
| MS.gene87441.t1 | AT2G18280 | 52.747 | 91 | 37 | 2 | 1 | 89 | 1 | 87 | 1.29e-19 | 86.7 |
| MS.gene87441.t1 | AT1G47270 | 34.673 | 199 | 70 | 6 | 89 | 228 | 181 | 378 | 2.77e-22 | 94.4 |
| MS.gene87441.t1 | AT1G47270 | 34.673 | 199 | 70 | 6 | 89 | 228 | 206 | 403 | 3.59e-22 | 94.0 |
| MS.gene87441.t1 | AT1G47270 | 34.673 | 199 | 70 | 6 | 89 | 228 | 205 | 402 | 3.64e-22 | 94.0 |
| MS.gene87441.t1 | AT1G53320 | 53.571 | 84 | 38 | 1 | 146 | 229 | 288 | 370 | 5.50e-20 | 87.8 |
| MS.gene87441.t1 | AT3G06380 | 53.571 | 84 | 35 | 2 | 145 | 228 | 199 | 278 | 5.57e-19 | 84.0 |
| MS.gene87441.t1 | AT3G06380 | 54.118 | 85 | 33 | 3 | 145 | 228 | 291 | 370 | 9.42e-19 | 84.3 |
| MS.gene87441.t1 | AT2G47900 | 51.190 | 84 | 38 | 2 | 145 | 228 | 317 | 397 | 1.33e-17 | 81.3 |
| MS.gene87441.t1 | AT2G47900 | 36.264 | 91 | 56 | 1 | 1 | 89 | 1 | 91 | 1.94e-12 | 66.2 |
| MS.gene87441.t1 | AT2G47900 | 51.190 | 84 | 38 | 2 | 145 | 228 | 316 | 396 | 1.46e-17 | 81.3 |
| MS.gene87441.t1 | AT2G47900 | 36.264 | 91 | 56 | 1 | 1 | 89 | 1 | 91 | 2.10e-12 | 66.2 |
| MS.gene87441.t1 | AT2G47900 | 51.190 | 84 | 38 | 2 | 145 | 228 | 316 | 396 | 1.46e-17 | 81.3 |
| MS.gene87441.t1 | AT2G47900 | 36.264 | 91 | 56 | 1 | 1 | 89 | 1 | 91 | 2.10e-12 | 66.2 |
| MS.gene87441.t1 | AT5G18680 | 48.352 | 91 | 36 | 3 | 145 | 228 | 201 | 287 | 2.74e-17 | 79.3 |
| MS.gene87441.t1 | AT1G25280 | 46.000 | 100 | 42 | 2 | 140 | 228 | 159 | 257 | 4.19e-17 | 78.2 |
| MS.gene87441.t1 | AT1G25280 | 46.000 | 100 | 42 | 2 | 140 | 228 | 159 | 257 | 4.19e-17 | 78.2 |
| MS.gene87441.t1 | AT5G18680 | 48.352 | 91 | 36 | 3 | 145 | 228 | 293 | 379 | 4.87e-17 | 79.3 |
| MS.gene87441.t1 | AT1G25280 | 46.000 | 100 | 42 | 2 | 140 | 228 | 337 | 435 | 1.48e-16 | 78.2 |
| MS.gene87441.t1 | AT1G25280 | 63.415 | 41 | 15 | 0 | 50 | 90 | 59 | 99 | 7.12e-12 | 64.7 |
| MS.gene87441.t1 | AT1G76900 | 43.000 | 100 | 40 | 3 | 145 | 228 | 347 | 445 | 7.89e-15 | 73.2 |
| MS.gene87441.t1 | AT1G76900 | 65.000 | 40 | 14 | 0 | 50 | 89 | 57 | 96 | 6.29e-11 | 62.0 |
| MS.gene87441.t1 | AT1G76900 | 43.000 | 100 | 40 | 3 | 145 | 228 | 347 | 445 | 7.89e-15 | 73.2 |
| MS.gene87441.t1 | AT1G76900 | 65.000 | 40 | 14 | 0 | 50 | 89 | 57 | 96 | 6.29e-11 | 62.0 |
| MS.gene87441.t1 | AT1G76900 | 43.000 | 100 | 40 | 3 | 145 | 228 | 347 | 445 | 7.89e-15 | 73.2 |
| MS.gene87441.t1 | AT1G76900 | 65.000 | 40 | 14 | 0 | 50 | 89 | 57 | 96 | 6.29e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGGAAGAGGTTTAAT+TGG | 0.210581 | 8.3:-26623589 | None:intergenic |
| TTTCTCCTGGAGTGCGAAAA+TGG | 0.301102 | 8.3:+26624769 | MS.gene87441:CDS |
| TCTACCACGTGAATTGCTTT+TGG | 0.303093 | 8.3:+26623624 | MS.gene87441:CDS |
| TGGTTGGTGCCCTGACTTCA+TGG | 0.333109 | 8.3:+26624680 | MS.gene87441:CDS |
| AATGAGCCTCTGCTCAATTC+TGG | 0.343539 | 8.3:-26624606 | None:intergenic |
| TCAATTCTGGTAGCTTTGAT+AGG | 0.363224 | 8.3:-26624593 | None:intergenic |
| AGACTTTCCCATTCTCCCTT+TGG | 0.363372 | 8.3:-26623604 | None:intergenic |
| AAATGGCCAATCTTGCAATT+AGG | 0.381085 | 8.3:+26624786 | MS.gene87441:CDS |
| ACACTTCCTAATTGCAAGAT+TGG | 0.394799 | 8.3:-26624792 | None:intergenic |
| ACCTCTTCCAAAGGGAGAAT+GGG | 0.416873 | 8.3:+26623597 | MS.gene87441:CDS |
| AACCTCTTCCAAAGGGAGAA+TGG | 0.426499 | 8.3:+26623596 | MS.gene87441:CDS |
| TCCCATTCTCCCTTTGGAAG+AGG | 0.433706 | 8.3:-26623598 | None:intergenic |
| TTAACACGGCCCATGAAGTC+AGG | 0.453031 | 8.3:-26624690 | None:intergenic |
| TTCTTCTTCACCAGCACTGA+AGG | 0.461098 | 8.3:+26624536 | MS.gene87441:CDS |
| TAGAGCAAATGCTCGCTCTC+AGG | 0.467795 | 8.3:-26623532 | None:intergenic |
| TCTCACTCTCTTCAACCTTA+CGG | 0.479526 | 8.3:-26623654 | None:intergenic |
| ACGACAACAACAGCACGCGC+AGG | 0.482373 | 8.3:-26623685 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.3:+26623662 | MS.gene87441:CDS |
| CGATCTCATAATGTTTCTCC+TGG | 0.484646 | 8.3:+26624756 | MS.gene87441:CDS |
| CTTCATGGGCCGTGTTAAAG+TGG | 0.491362 | 8.3:+26624695 | MS.gene87441:CDS |
| TCCAATTAAACCTCTTCCAA+AGG | 0.493211 | 8.3:+26623588 | MS.gene87441:CDS |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.510477 | 8.3:-26624866 | None:intergenic |
| TTGCAATTAGGAAGTGTGGA+TGG | 0.513083 | 8.3:+26624798 | MS.gene87441:CDS |
| AGAGCGAGCATTTGCTCTAT+CGG | 0.517655 | 8.3:+26623536 | MS.gene87441:CDS |
| CCAATTAAACCTCTTCCAAA+GGG | 0.520678 | 8.3:+26623589 | MS.gene87441:CDS |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8.3:-26624862 | None:intergenic |
| AAGGCTTGGAAGGCAGAGAA+TGG | 0.529766 | 8.3:-26624852 | None:intergenic |
| TGCAATTAGGAAGTGTGGAT+GGG | 0.542295 | 8.3:+26624799 | MS.gene87441:CDS |
| GATAGTGTCGCATCTTGCTA+TGG | 0.548725 | 8.3:+26623558 | MS.gene87441:CDS |
| GTGCTTCAGTGTGTAAATCA+TGG | 0.563699 | 8.3:+26623710 | MS.gene87441:CDS |
| TCTTCTTCACCAGCACTGAA+GGG | 0.574228 | 8.3:+26624537 | MS.gene87441:CDS |
| GGTTGGTGCCCTGACTTCAT+GGG | 0.576908 | 8.3:+26624681 | MS.gene87441:CDS |
| TATGCAACAAATCAAGCAGA+TGG | 0.578623 | 8.3:-26624877 | None:intergenic |
| AATCTTGCAATTAGGAAGTG+TGG | 0.590555 | 8.3:+26624794 | MS.gene87441:CDS |
| ATCGATCAACAACAGCTACA+AGG | 0.593016 | 8.3:-26624737 | None:intergenic |
| GAAAGAGTTTCATCAAACAC+TGG | 0.593740 | 8.3:-26624516 | None:intergenic |
| AAGCATAGTTCAAGAACCCA+AGG | 0.595132 | 8.3:+26623480 | MS.gene87441:CDS |
| AAATGGGATGAGCAGCGCAA+TGG | 0.611060 | 8.3:+26624660 | MS.gene87441:CDS |
| ACAAATCAAGCAGATGGCAA+AGG | 0.618453 | 8.3:-26624871 | None:intergenic |
| AGTGTCGTATATAGTGAACT+TGG | 0.625989 | 8.3:-26624487 | None:intergenic |
| TAACACGGCCCATGAAGTCA+GGG | 0.643723 | 8.3:-26624689 | None:intergenic |
| AGAGTTTCATCAAACACTGG+AGG | 0.644449 | 8.3:-26624513 | None:intergenic |
| TCATAGATTCCACTTTAACA+CGG | 0.648935 | 8.3:-26624704 | None:intergenic |
| GGGATGAGCAGCGCAATGGT+TGG | 0.651798 | 8.3:+26624664 | MS.gene87441:CDS |
| AAGCTACCAGAATTGAGCAG+AGG | 0.699056 | 8.3:+26624600 | MS.gene87441:CDS |
| ATGTCCAAAAGCAATTCACG+TGG | 0.740624 | 8.3:-26623628 | None:intergenic |
| CTTCAGTGTGTAAATCATGG+AGG | 0.768426 | 8.3:+26623713 | MS.gene87441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAAACAAGGCTCTTAAAT+GGG | + | chr8.3:26624644-26624663 | MS.gene87441:CDS | 25.0% |
| ! | AAAAATGGAATATCAAAGCA+GGG | + | chr8.3:26623508-26623527 | MS.gene87441:CDS | 25.0% |
| ! | GACCTTTATACTAAAAAACA+AGG | + | chr8.3:26624632-26624651 | MS.gene87441:CDS | 25.0% |
| ! | TAAAAAACAAGGCTCTTAAA+TGG | + | chr8.3:26624643-26624662 | MS.gene87441:CDS | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+AGG | + | chr8.3:26623507-26623526 | MS.gene87441:CDS | 25.0% |
| ! | TTCTACATTTCTGTTGTATT+TGG | + | chr8.3:26623957-26623976 | MS.gene87441:intron | 25.0% |
| !! | ATATTCACTGTCTTTGAAAA+AGG | - | chr8.3:26624020-26624039 | None:intergenic | 25.0% |
| !! | CAACTTGATTTTTATACGTA+TGG | + | chr8.3:26624444-26624463 | MS.gene87441:intron | 25.0% |
| !!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr8.3:26624637-26624656 | None:intergenic | 25.0% |
| !!! | ATATTGATTTACCCTTCTAT+CGG | + | chr8.3:26624393-26624412 | MS.gene87441:intron | 25.0% |
| !!! | ATTCCATTTTTAATCTCCTT+GGG | - | chr8.3:26623499-26623518 | None:intergenic | 25.0% |
| !!! | TATTCCATTTTTAATCTCCT+TGG | - | chr8.3:26623500-26623519 | None:intergenic | 25.0% |
| AACAAGTTGCTAAAATACGT+AGG | - | chr8.3:26624210-26624229 | None:intergenic | 30.0% | |
| AAGAGAACATAAAAAACTCG+AGG | - | chr8.3:26623864-26623883 | None:intergenic | 30.0% | |
| ACTTACTTGCTCTACATTTA+TGG | + | chr8.3:26624110-26624129 | MS.gene87441:intron | 30.0% | |
| AGAGAACATAAAAAACTCGA+GGG | - | chr8.3:26623863-26623882 | None:intergenic | 30.0% | |
| ATCCGATACATTGCTTTATA+AGG | + | chr8.3:26623920-26623939 | MS.gene87441:intron | 30.0% | |
| ATTTATTGTCATTCCGATTG+TGG | + | chr8.3:26624144-26624163 | MS.gene87441:intron | 30.0% | |
| ATTTCCTATTTCATTGATGC+AGG | + | chr8.3:26623786-26623805 | MS.gene87441:intron | 30.0% | |
| ATTTGAATTAGACCAGAAAG+TGG | - | chr8.3:26623831-26623850 | None:intergenic | 30.0% | |
| CAATGACAATAAACCACAAT+CGG | - | chr8.3:26624160-26624179 | None:intergenic | 30.0% | |
| CTCCTTATAAAGCAATGTAT+CGG | - | chr8.3:26623925-26623944 | None:intergenic | 30.0% | |
| GTTTGGTTGTAATTGTATAG+CGG | + | chr8.3:26624233-26624252 | MS.gene87441:intron | 30.0% | |
| TCATAGATTCCACTTTAACA+CGG | - | chr8.3:26624707-26624726 | None:intergenic | 30.0% | |
| TTTGAATTAGACCAGAAAGT+GGG | - | chr8.3:26623830-26623849 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAACTG+AGG | + | chr8.3:26624352-26624371 | MS.gene87441:intron | 30.0% |
| ! | ATCAAGTTGTGAAGACTATA+AGG | - | chr8.3:26624433-26624452 | None:intergenic | 30.0% |
| ! | TTGATTTTTATACGTATGGC+AGG | + | chr8.3:26624448-26624467 | MS.gene87441:intron | 30.0% |
| !!! | CGTATTTTAGCAACTTGTTT+TGG | + | chr8.3:26624211-26624230 | MS.gene87441:intron | 30.0% |
| !!! | TTTAGCAACTTGTTTTGGTT+TGG | + | chr8.3:26624216-26624235 | MS.gene87441:intron | 30.0% |
| AAATGGCCAATCTTGCAATT+AGG | + | chr8.3:26624786-26624805 | MS.gene87441:CDS | 35.0% | |
| AATCTTGCAATTAGGAAGTG+TGG | + | chr8.3:26624794-26624813 | MS.gene87441:CDS | 35.0% | |
| ACACTTCCTAATTGCAAGAT+TGG | - | chr8.3:26624795-26624814 | None:intergenic | 35.0% | |
| AGTGTCGTATATAGTGAACT+TGG | - | chr8.3:26624490-26624509 | None:intergenic | 35.0% | |
| ATTGCCTGCATCAATGAAAT+AGG | - | chr8.3:26623793-26623812 | None:intergenic | 35.0% | |
| CCAATTAAACCTCTTCCAAA+GGG | + | chr8.3:26623589-26623608 | MS.gene87441:CDS | 35.0% | |
| CGATACATTGCTTTATAAGG+AGG | + | chr8.3:26623923-26623942 | MS.gene87441:intron | 35.0% | |
| GAAAGAGTTTCATCAAACAC+TGG | - | chr8.3:26624519-26624538 | None:intergenic | 35.0% | |
| GAACCCAAGGAGATTAAAAA+TGG | + | chr8.3:26623493-26623512 | MS.gene87441:CDS | 35.0% | |
| TATGCAACAAATCAAGCAGA+TGG | - | chr8.3:26624880-26624899 | None:intergenic | 35.0% | |
| TCCAATTAAACCTCTTCCAA+AGG | + | chr8.3:26623588-26623607 | MS.gene87441:CDS | 35.0% | |
| TTAATTCTTCACCCACTTTC+TGG | + | chr8.3:26623816-26623835 | MS.gene87441:intron | 35.0% | |
| ! | AGTTGTTATTAGCTGCCAAA+AGG | + | chr8.3:26624271-26624290 | MS.gene87441:intron | 35.0% |
| ! | CACTGTCTTTGAAAAAGGTA+AGG | - | chr8.3:26624015-26624034 | None:intergenic | 35.0% |
| ! | TTTGACGATCTCTTTTGTGA+CGG | - | chr8.3:26623740-26623759 | None:intergenic | 35.0% |
| !! | TCAATTCTGGTAGCTTTGAT+AGG | - | chr8.3:26624596-26624615 | None:intergenic | 35.0% |
| AAACTCTTCAGCAATGTGGA+AGG | + | chr8.3:26623758-26623777 | MS.gene87441:intron | 40.0% | |
| AAGCATAGTTCAAGAACCCA+AGG | + | chr8.3:26623480-26623499 | MS.gene87441:CDS | 40.0% | |
| ACAAATCAAGCAGATGGCAA+AGG | - | chr8.3:26624874-26624893 | None:intergenic | 40.0% | |
| ACGATGAAATGCCGATAGAA+GGG | - | chr8.3:26624407-26624426 | None:intergenic | 40.0% | |
| AGAAAAATCATCTGCAGCCA+AGG | - | chr8.3:26624322-26624341 | None:intergenic | 40.0% | |
| AGAGTTTCATCAAACACTGG+AGG | - | chr8.3:26624516-26624535 | None:intergenic | 40.0% | |
| ATCGATCAACAACAGCTACA+AGG | - | chr8.3:26624740-26624759 | None:intergenic | 40.0% | |
| ATGTCCAAAAGCAATTCACG+TGG | - | chr8.3:26623631-26623650 | None:intergenic | 40.0% | |
| CAATGTATCGGATAATCACG+AGG | - | chr8.3:26623913-26623932 | None:intergenic | 40.0% | |
| CGAGCAAGCAACAAATATGT+TGG | + | chr8.3:26624342-26624361 | MS.gene87441:intron | 40.0% | |
| CGATCTCATAATGTTTCTCC+TGG | + | chr8.3:26624756-26624775 | MS.gene87441:CDS | 40.0% | |
| CTTCAGTGTGTAAATCATGG+AGG | + | chr8.3:26623713-26623732 | MS.gene87441:CDS | 40.0% | |
| GTCAAAACTCTTCAGCAATG+TGG | + | chr8.3:26623754-26623773 | MS.gene87441:intron | 40.0% | |
| GTGCTTCAGTGTGTAAATCA+TGG | + | chr8.3:26623710-26623729 | MS.gene87441:CDS | 40.0% | |
| TCTCACTCTCTTCAACCTTA+CGG | - | chr8.3:26623657-26623676 | None:intergenic | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.3:26623662-26623681 | MS.gene87441:CDS | 40.0% | |
| ! | CCCTTTGGAAGAGGTTTAAT+TGG | - | chr8.3:26623592-26623611 | None:intergenic | 40.0% |
| ! | CGTATGGCAGGTCAAATTTT+TGG | + | chr8.3:26624460-26624479 | MS.gene87441:intron | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+AGG | + | chr8.3:26623639-26623658 | MS.gene87441:CDS | 40.0% |
| ! | TCTACCACGTGAATTGCTTT+TGG | + | chr8.3:26623624-26623643 | MS.gene87441:CDS | 40.0% |
| ! | TGCAATTAGGAAGTGTGGAT+GGG | + | chr8.3:26624799-26624818 | MS.gene87441:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | + | chr8.3:26624362-26624381 | MS.gene87441:intron | 40.0% |
| ! | TTGCAATTAGGAAGTGTGGA+TGG | + | chr8.3:26624798-26624817 | MS.gene87441:CDS | 40.0% |
| AACCTCTTCCAAAGGGAGAA+TGG | + | chr8.3:26623596-26623615 | MS.gene87441:CDS | 45.0% | |
| AAGCTACCAGAATTGAGCAG+AGG | + | chr8.3:26624600-26624619 | MS.gene87441:CDS | 45.0% | |
| AATGAGCCTCTGCTCAATTC+TGG | - | chr8.3:26624609-26624628 | None:intergenic | 45.0% | |
| ACCTCTTCCAAAGGGAGAAT+GGG | + | chr8.3:26623597-26623616 | MS.gene87441:CDS | 45.0% | |
| AGACTTTCCCATTCTCCCTT+TGG | - | chr8.3:26623607-26623626 | None:intergenic | 45.0% | |
| AGAGCGAGCATTTGCTCTAT+CGG | + | chr8.3:26623536-26623555 | MS.gene87441:CDS | 45.0% | |
| AGCCAAGGATATGACGAAGT+TGG | - | chr8.3:26624307-26624326 | None:intergenic | 45.0% | |
| CACGATGAAATGCCGATAGA+AGG | - | chr8.3:26624408-26624427 | None:intergenic | 45.0% | |
| CAGGCTAAGCATGCACATAA+AGG | - | chr8.3:26623888-26623907 | None:intergenic | 45.0% | |
| CTTCTATCGGCATTTCATCG+TGG | + | chr8.3:26624406-26624425 | MS.gene87441:intron | 45.0% | |
| CTTTATGTGCATGCTTAGCC+TGG | + | chr8.3:26623886-26623905 | MS.gene87441:intron | 45.0% | |
| GATAGTGTCGCATCTTGCTA+TGG | + | chr8.3:26623558-26623577 | MS.gene87441:CDS | 45.0% | |
| GTCCAACTTCGTCATATCCT+TGG | + | chr8.3:26624302-26624321 | MS.gene87441:intron | 45.0% | |
| TAGCTGCCAAAAGGATACGA+AGG | + | chr8.3:26624280-26624299 | MS.gene87441:intron | 45.0% | |
| TTTCTCCTGGAGTGCGAAAA+TGG | + | chr8.3:26624769-26624788 | MS.gene87441:CDS | 45.0% | |
| ! | GTTGGACCTTCGTATCCTTT+TGG | - | chr8.3:26624289-26624308 | None:intergenic | 45.0% |
| ! | TCTTCTTCACCAGCACTGAA+GGG | + | chr8.3:26624537-26624556 | MS.gene87441:CDS | 45.0% |
| ! | TTCTTCTTCACCAGCACTGA+AGG | + | chr8.3:26624536-26624555 | MS.gene87441:CDS | 45.0% |
| AAATGGGATGAGCAGCGCAA+TGG | + | chr8.3:26624660-26624679 | MS.gene87441:CDS | 50.0% | |
| AAGGCTTGGAAGGCAGAGAA+TGG | - | chr8.3:26624855-26624874 | None:intergenic | 50.0% | |
| ATCGGATAATCACGAGGACC+AGG | - | chr8.3:26623907-26623926 | None:intergenic | 50.0% | |
| CTTCATGGGCCGTGTTAAAG+TGG | + | chr8.3:26624695-26624714 | MS.gene87441:CDS | 50.0% | |
| TAACACGGCCCATGAAGTCA+GGG | - | chr8.3:26624692-26624711 | None:intergenic | 50.0% | |
| TAGAGCAAATGCTCGCTCTC+AGG | - | chr8.3:26623535-26623554 | None:intergenic | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | - | chr8.3:26624869-26624888 | None:intergenic | 50.0% | |
| TTAACACGGCCCATGAAGTC+AGG | - | chr8.3:26624693-26624712 | None:intergenic | 50.0% | |
| ! | TCCCATTCTCCCTTTGGAAG+AGG | - | chr8.3:26623601-26623620 | None:intergenic | 50.0% |
| !! | ATTGGCCATTTTCGCACTCC+AGG | - | chr8.3:26624777-26624796 | None:intergenic | 50.0% |
| GCAGATGGCAAAGGCTTGGA+AGG | - | chr8.3:26624865-26624884 | None:intergenic | 55.0% | |
| ! | CGACGTTTTCCCTTCAGTGC+TGG | - | chr8.3:26624549-26624568 | None:intergenic | 55.0% |
| ! | GGTTGGTGCCCTGACTTCAT+GGG | + | chr8.3:26624681-26624700 | MS.gene87441:CDS | 55.0% |
| ! | TGGTTGGTGCCCTGACTTCA+TGG | + | chr8.3:26624680-26624699 | MS.gene87441:CDS | 55.0% |
| ACGACAACAACAGCACGCGC+AGG | - | chr8.3:26623688-26623707 | None:intergenic | 60.0% | |
| GGGATGAGCAGCGCAATGGT+TGG | + | chr8.3:26624664-26624683 | MS.gene87441:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26623469 | 26624902 | 26623469 | ID=MS.gene87441 |
| chr8.3 | mRNA | 26623469 | 26624902 | 26623469 | ID=MS.gene87441.t1;Parent=MS.gene87441 |
| chr8.3 | exon | 26623469 | 26623734 | 26623469 | ID=MS.gene87441.t1.exon1;Parent=MS.gene87441.t1 |
| chr8.3 | CDS | 26623469 | 26623734 | 26623469 | ID=cds.MS.gene87441.t1;Parent=MS.gene87441.t1 |
| chr8.3 | exon | 26624470 | 26624902 | 26624470 | ID=MS.gene87441.t1.exon2;Parent=MS.gene87441.t1 |
| chr8.3 | CDS | 26624470 | 26624902 | 26624470 | ID=cds.MS.gene87441.t1;Parent=MS.gene87441.t1 |
| Gene Sequence |
| Protein sequence |
