Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87444.t1 | RHN42114.1 | 75.7 | 366 | 50 | 4 | 1 | 344 | 1 | 349 | 2.60E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87444.t1 | Q6Z2G9 | 40.5 | 422 | 167 | 10 | 1 | 341 | 1 | 419 | 8.0e-66 | 252.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87444.t1 | A0A396GRI1 | 75.7 | 366 | 50 | 4 | 1 | 344 | 1 | 349 | 1.9e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87444.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87444.t1 | MTR_8g077620 | 67.654 | 405 | 54 | 5 | 1 | 345 | 1 | 388 | 0.0 | 509 |
| MS.gene87444.t1 | MTR_8g077195 | 56.265 | 407 | 112 | 9 | 1 | 343 | 1 | 405 | 7.14e-140 | 403 |
| MS.gene87444.t1 | MTR_8g077675 | 50.976 | 410 | 129 | 9 | 1 | 348 | 1 | 400 | 6.78e-114 | 337 |
| MS.gene87444.t1 | MTR_5g020580 | 47.101 | 414 | 143 | 11 | 1 | 343 | 1 | 409 | 1.28e-110 | 329 |
| MS.gene87444.t1 | MTR_8g077650 | 43.875 | 351 | 126 | 10 | 36 | 341 | 3 | 327 | 1.50e-70 | 223 |
| MS.gene87444.t1 | MTR_2g007930 | 35.142 | 424 | 190 | 11 | 1 | 343 | 1 | 420 | 2.17e-68 | 221 |
| MS.gene87444.t1 | MTR_8g077640 | 42.577 | 357 | 169 | 9 | 1 | 340 | 46 | 383 | 7.36e-64 | 208 |
| MS.gene87444.t1 | MTR_2g020280 | 34.615 | 364 | 172 | 8 | 41 | 343 | 28 | 386 | 6.37e-56 | 187 |
| MS.gene87444.t1 | MTR_2g076200 | 35.196 | 358 | 145 | 10 | 45 | 343 | 35 | 364 | 3.19e-52 | 177 |
| MS.gene87444.t1 | MTR_1g022370 | 43.891 | 221 | 101 | 6 | 133 | 343 | 208 | 415 | 1.60e-45 | 160 |
| MS.gene87444.t1 | MTR_1g022370 | 51.128 | 133 | 47 | 2 | 1 | 115 | 1 | 133 | 4.85e-29 | 116 |
| MS.gene87444.t1 | MTR_2g020280 | 41.667 | 216 | 116 | 5 | 133 | 343 | 77 | 287 | 8.61e-42 | 147 |
| MS.gene87444.t1 | MTR_1g098790 | 38.750 | 240 | 112 | 8 | 133 | 343 | 191 | 424 | 8.70e-41 | 148 |
| MS.gene87444.t1 | MTR_1g098790 | 46.218 | 119 | 57 | 3 | 1 | 115 | 1 | 116 | 7.25e-25 | 104 |
| MS.gene87444.t1 | MTR_2g076210 | 32.970 | 367 | 152 | 13 | 40 | 343 | 25 | 360 | 2.69e-38 | 140 |
| MS.gene87444.t1 | MTR_1g088960 | 39.450 | 218 | 116 | 8 | 133 | 343 | 187 | 395 | 2.32e-34 | 130 |
| MS.gene87444.t1 | MTR_1g088960 | 39.669 | 121 | 59 | 2 | 1 | 115 | 1 | 113 | 3.34e-19 | 88.2 |
| MS.gene87444.t1 | MTR_1g023800 | 55.172 | 116 | 50 | 2 | 1 | 115 | 1 | 115 | 4.75e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87444.t1 | AT2G18280 | 42.716 | 405 | 151 | 12 | 1 | 343 | 1 | 386 | 1.08e-83 | 259 |
| MS.gene87444.t1 | AT2G18280 | 42.716 | 405 | 151 | 12 | 1 | 343 | 1 | 386 | 1.08e-83 | 259 |
| MS.gene87444.t1 | AT2G47900 | 34.729 | 406 | 195 | 8 | 1 | 343 | 1 | 399 | 3.47e-64 | 209 |
| MS.gene87444.t1 | AT2G47900 | 34.729 | 406 | 195 | 8 | 1 | 343 | 1 | 399 | 3.47e-64 | 209 |
| MS.gene87444.t1 | AT1G47270 | 36.650 | 412 | 157 | 14 | 1 | 341 | 1 | 379 | 2.48e-62 | 204 |
| MS.gene87444.t1 | AT1G47270 | 36.650 | 412 | 157 | 14 | 1 | 341 | 25 | 403 | 4.19e-62 | 204 |
| MS.gene87444.t1 | AT1G47270 | 36.650 | 412 | 157 | 14 | 1 | 341 | 26 | 404 | 4.54e-62 | 204 |
| MS.gene87444.t1 | AT2G47900 | 33.907 | 407 | 198 | 8 | 1 | 343 | 1 | 400 | 7.07e-60 | 198 |
| MS.gene87444.t1 | AT1G43640 | 33.875 | 431 | 184 | 16 | 1 | 341 | 1 | 420 | 1.33e-58 | 195 |
| MS.gene87444.t1 | AT1G76900 | 31.648 | 455 | 192 | 15 | 1 | 343 | 1 | 448 | 6.03e-56 | 189 |
| MS.gene87444.t1 | AT1G76900 | 31.648 | 455 | 192 | 15 | 1 | 343 | 1 | 448 | 6.03e-56 | 189 |
| MS.gene87444.t1 | AT1G76900 | 31.648 | 455 | 192 | 15 | 1 | 343 | 1 | 448 | 6.03e-56 | 189 |
| MS.gene87444.t1 | AT1G53320 | 35.028 | 354 | 143 | 9 | 52 | 343 | 44 | 372 | 7.30e-50 | 171 |
| MS.gene87444.t1 | AT5G18680 | 33.062 | 369 | 168 | 13 | 40 | 343 | 28 | 382 | 2.24e-45 | 159 |
| MS.gene87444.t1 | AT1G43640 | 32.778 | 360 | 154 | 14 | 64 | 341 | 1 | 354 | 7.85e-45 | 157 |
| MS.gene87444.t1 | AT1G25280 | 37.398 | 246 | 115 | 8 | 133 | 343 | 19 | 260 | 6.57e-38 | 137 |
| MS.gene87444.t1 | AT1G25280 | 37.398 | 246 | 115 | 8 | 133 | 343 | 19 | 260 | 6.57e-38 | 137 |
| MS.gene87444.t1 | AT1G25280 | 37.398 | 246 | 115 | 8 | 133 | 343 | 197 | 438 | 9.45e-37 | 138 |
| MS.gene87444.t1 | AT1G25280 | 40.580 | 138 | 69 | 3 | 1 | 128 | 1 | 135 | 9.83e-25 | 104 |
| MS.gene87444.t1 | AT5G18680 | 38.813 | 219 | 113 | 8 | 133 | 343 | 85 | 290 | 3.21e-33 | 125 |
| MS.gene87444.t1 | AT3G06380 | 38.115 | 244 | 123 | 12 | 109 | 343 | 57 | 281 | 1.26e-31 | 120 |
| MS.gene87444.t1 | AT3G06380 | 38.115 | 244 | 123 | 12 | 109 | 343 | 149 | 373 | 5.78e-31 | 121 |
| MS.gene87444.t1 | AT3G06380 | 38.000 | 100 | 59 | 2 | 32 | 128 | 11 | 110 | 4.92e-13 | 70.1 |
| MS.gene87444.t1 | AT1G61940 | 31.535 | 241 | 102 | 9 | 55 | 293 | 1 | 180 | 8.98e-22 | 93.2 |
| MS.gene87444.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 55 | 115 | 1 | 61 | 1.32e-14 | 73.6 |
Find 80 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCACTTGGTCGAAAATT+TGG | 0.167969 | 8.3:+26641393 | None:intergenic |
| GTTCTACAGGAGAATCATTA+TGG | 0.237254 | 8.3:+26640959 | None:intergenic |
| ATTACCTGCTTCAATGAAAT+AGG | 0.248006 | 8.3:+26642648 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.255588 | 8.3:-26642814 | MS.gene87444:CDS |
| ATGATGCAGTACATTCTTCT+TGG | 0.281518 | 8.3:+26641282 | None:intergenic |
| TAACATTGTTACCACTATTC+AGG | 0.289550 | 8.3:-26641253 | MS.gene87444:CDS |
| TATGGCAGGTCTGATTTCTT+TGG | 0.307220 | 8.3:-26641468 | MS.gene87444:intron |
| ATTATATCCAAAAGCAATTC+AGG | 0.327576 | 8.3:+26642807 | None:intergenic |
| CTACATGCTCGAACTCTTCT+TGG | 0.336761 | 8.3:+26641348 | None:intergenic |
| GTGTTGGTGTTTAGACTTCA+TGG | 0.351367 | 8.3:-26641043 | MS.gene87444:CDS |
| ATACCTGTTGTACTTAGGTT+TGG | 0.369692 | 8.3:-26642479 | MS.gene87444:CDS |
| TGCCCACTGTCCCTGTTGAA+TGG | 0.380040 | 8.3:+26642839 | None:intergenic |
| TTCAACTGAAGCCATTCAAC+AGG | 0.393801 | 8.3:-26642850 | MS.gene87444:CDS |
| CGGAAAAGACATATTCGTTA+TGG | 0.399172 | 8.3:-26640905 | MS.gene87444:CDS |
| GAAAGGGTAGTCTTGCAGTT+TGG | 0.405279 | 8.3:-26640934 | MS.gene87444:CDS |
| GGTGCTGGTGAAGGAGAAAA+AGG | 0.407551 | 8.3:+26641180 | None:intergenic |
| TTGAAGAGAGTGAGAAATCT+TGG | 0.434625 | 8.3:-26642776 | MS.gene87444:CDS |
| CAGACAACAATGGCACGGCC+AGG | 0.434852 | 8.3:+26642753 | None:intergenic |
| TCAAAAGCAAGGACTGCATA+AGG | 0.448680 | 8.3:-26641080 | MS.gene87444:CDS |
| ACTGTCATATATAGTGAAAT+CGG | 0.448882 | 8.3:+26641443 | None:intergenic |
| CATTGTTGTCTGTTGTGCTT+CGG | 0.457188 | 8.3:-26642742 | MS.gene87444:CDS |
| GCAGAGTCTGAATTTGTCAT+TGG | 0.458695 | 8.3:+26641144 | None:intergenic |
| GCTCCAAACCTAAGTACAAC+AGG | 0.464419 | 8.3:+26642476 | None:intergenic |
| GCACGCCCATCAGAGCTACT+AGG | 0.464636 | 8.3:-26641123 | MS.gene87444:CDS |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.3:-26642652 | MS.gene87444:intron |
| TCTACATACCTGTTGTACTT+AGG | 0.468395 | 8.3:-26642484 | MS.gene87444:CDS |
| CTCAGTCCTAGTAGCTCTGA+TGG | 0.472044 | 8.3:+26641117 | None:intergenic |
| TTCTACAGGAGAATCATTAT+GGG | 0.477805 | 8.3:+26640960 | None:intergenic |
| TTCTCCTTCACCAGCACCGA+AGG | 0.479949 | 8.3:-26641175 | MS.gene87444:CDS |
| TCAAGCAGATGGCGAAGGCT+TGG | 0.484081 | 8.3:+26640857 | None:intergenic |
| TTTCCCTTCGGTGCTGGTGA+AGG | 0.486092 | 8.3:+26641171 | None:intergenic |
| ATTCTCCTGTAGAACGAGAA+AGG | 0.488462 | 8.3:-26640951 | MS.gene87444:CDS |
| TAGGTAACAATGTTGGAGAC+GGG | 0.492846 | 8.3:+26641217 | None:intergenic |
| GTCTTGCAGTTTGGAAAGAT+CGG | 0.499553 | 8.3:-26640925 | MS.gene87444:CDS |
| ACTACCCTTTCTCGTTCTAC+AGG | 0.500493 | 8.3:+26640946 | None:intergenic |
| CAAAAGCAAGGACTGCATAA+GGG | 0.505355 | 8.3:-26641079 | MS.gene87444:CDS |
| ATGATCAGAAATGTAGTTTG+AGG | 0.507424 | 8.3:+26640821 | None:intergenic |
| TGTCCGACAGAGCTTATGCT+TGG | 0.514796 | 8.3:+26642899 | None:intergenic |
| GACAAAGTCCCATGTTGCAT+TGG | 0.517025 | 8.3:-26642880 | MS.gene87444:CDS |
| TTCTCCTGTAGAACGAGAAA+GGG | 0.519901 | 8.3:-26640950 | MS.gene87444:CDS |
| CACAACAGACAACAATGGCA+CGG | 0.540201 | 8.3:+26642748 | None:intergenic |
| TGATCAGAAATGTAGTTTGA+GGG | 0.540321 | 8.3:+26640822 | None:intergenic |
| GCAGATGGCGAAGGCTTGGA+AGG | 0.544242 | 8.3:+26640861 | None:intergenic |
| TGTTGGTGTTTAGACTTCAT+GGG | 0.546310 | 8.3:-26641042 | MS.gene87444:CDS |
| AAGCATAGTGTGCAAACTCA+AGG | 0.547135 | 8.3:-26642964 | MS.gene87444:CDS |
| TTAGGTAACAATGTTGGAGA+CGG | 0.553086 | 8.3:+26641216 | None:intergenic |
| TCTCAATTGCGTCAAGCAGA+TGG | 0.556178 | 8.3:+26640846 | None:intergenic |
| TGTTACCACTATTCAGGAAG+GGG | 0.558841 | 8.3:-26641247 | MS.gene87444:CDS |
| ACCCTTGTTGCTCAAAAGCA+AGG | 0.563852 | 8.3:-26641091 | MS.gene87444:CDS |
| GAGAGTGAGAAATCTTGGCC+TGG | 0.564046 | 8.3:-26642771 | MS.gene87444:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.564780 | 8.3:+26642784 | None:intergenic |
| AGCATAGTGTGCAAACTCAA+GGG | 0.568062 | 8.3:-26642963 | MS.gene87444:CDS |
| AGGAAATGGTGCTAACAAGA+TGG | 0.575547 | 8.3:+26641325 | None:intergenic |
| ATTGTTACCACTATTCAGGA+AGG | 0.577100 | 8.3:-26641249 | MS.gene87444:CDS |
| TCAGTCCTAGTAGCTCTGAT+GGG | 0.597534 | 8.3:+26641118 | None:intergenic |
| CTTGACACTCTCTAACGTGA+TGG | 0.598262 | 8.3:+26642701 | None:intergenic |
| AGACCAAGCATAAGCTCTGT+CGG | 0.601094 | 8.3:-26642902 | MS.gene87444:CDS |
| AAGTTACATCCAATGCAACA+TGG | 0.602760 | 8.3:+26642871 | None:intergenic |
| TTGTTACCACTATTCAGGAA+GGG | 0.603135 | 8.3:-26641248 | MS.gene87444:CDS |
| TTGCGTCAAGCAGATGGCGA+AGG | 0.606195 | 8.3:+26640852 | None:intergenic |
| AGCCATTCAACAGGGACAGT+GGG | 0.606811 | 8.3:-26642841 | MS.gene87444:CDS |
| ACAGGAGAATCATTATGGGA+TGG | 0.615397 | 8.3:+26640964 | None:intergenic |
| AAGCCATTCAACAGGGACAG+TGG | 0.618682 | 8.3:-26642842 | MS.gene87444:CDS |
| TCTCCTTCACCAGCACCGAA+GGG | 0.619211 | 8.3:-26641174 | MS.gene87444:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 8.3:+26640871 | None:intergenic |
| GTTACCACTATTCAGGAAGG+GGG | 0.635875 | 8.3:-26641246 | MS.gene87444:CDS |
| GGTTGAACTGCAGCATCATG+TGG | 0.636955 | 8.3:+26641414 | None:intergenic |
| AGTTACATCCAATGCAACAT+GGG | 0.643011 | 8.3:+26642872 | None:intergenic |
| GCATAGTGTGCAAACTCAAG+GGG | 0.643409 | 8.3:-26642962 | MS.gene87444:CDS |
| TTAGAATTAAACATCCCACT+TGG | 0.645533 | 8.3:+26641381 | None:intergenic |
| GTCAAGACTCCTCAGCAATG+TGG | 0.660017 | 8.3:-26642684 | MS.gene87444:CDS |
| AGGTAACAATGTTGGAGACG+GGG | 0.672550 | 8.3:+26641218 | None:intergenic |
| CTTCGGTATGTAAATCGTGG+AGG | 0.672621 | 8.3:-26642725 | MS.gene87444:CDS |
| TCAACTGAAGCCATTCAACA+GGG | 0.681666 | 8.3:-26642849 | MS.gene87444:CDS |
| CGAAGCACAACAGACAACAA+TGG | 0.693040 | 8.3:+26642743 | None:intergenic |
| GTAAGCGTTCCACATTGCTG+AGG | 0.696256 | 8.3:+26642675 | None:intergenic |
| ATATCCAAAAGCAATTCAGG+AGG | 0.702318 | 8.3:+26642810 | None:intergenic |
| GGGATGAGCAGCGAAAGTGT+TGG | 0.703904 | 8.3:-26641059 | MS.gene87444:CDS |
| TGAACTGCAGCATCATGTGG+AGG | 0.706539 | 8.3:+26641417 | None:intergenic |
| GTGCTTCGGTATGTAAATCG+TGG | 0.718786 | 8.3:-26642728 | MS.gene87444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTGGTAAAAAAAAAAACT+TGG | - | chr8.3:26641525-26641544 | MS.gene87444:intron | 20.0% |
| !! | ATTCATTTATTAATGATCCA+AGG | + | chr8.3:26641691-26641710 | None:intergenic | 20.0% |
| !!! | AAAGGTTCATCAAATATTTT+AGG | + | chr8.3:26642605-26642624 | None:intergenic | 20.0% |
| !!! | AAATGTATAGGTTTTACTTT+TGG | - | chr8.3:26641768-26641787 | MS.gene87444:intron | 20.0% |
| !!! | AATATTTTAGGTAACAATGT+TGG | + | chr8.3:26642593-26642612 | None:intergenic | 20.0% |
| !!! | ATTTATTTTCATTTAGGTTG+TGG | - | chr8.3:26642001-26642020 | MS.gene87444:intron | 20.0% |
| !!! | CAACTTGATTTTTAAATGTA+TGG | - | chr8.3:26642314-26642333 | MS.gene87444:intron | 20.0% |
| !!! | GATTTATCCTTTTATTCTAT+TGG | - | chr8.3:26642263-26642282 | MS.gene87444:intron | 20.0% |
| !!! | GTTATTTTTGCAATTTGTTA+AGG | - | chr8.3:26641943-26641962 | MS.gene87444:intron | 20.0% |
| ! | AAACAAAACCCAAAAACTTA+GGG | + | chr8.3:26641471-26641490 | None:intergenic | 25.0% |
| ! | ACTGTCATATATAGTGAAAT+CGG | + | chr8.3:26642360-26642379 | None:intergenic | 25.0% |
| ! | ATTATATCCAAAAGCAATTC+AGG | + | chr8.3:26640996-26641015 | None:intergenic | 25.0% |
| ! | CAAGTTGTCAAGATTATAAA+GGG | + | chr8.3:26642301-26642320 | None:intergenic | 25.0% |
| ! | GAATAAGATCTTAGATAACT+TGG | - | chr8.3:26641508-26641527 | MS.gene87444:intron | 25.0% |
| ! | TAAACAAAACCCAAAAACTT+AGG | + | chr8.3:26641472-26641491 | None:intergenic | 25.0% |
| ! | TACAAATTATTCGTATTGCT+TGG | - | chr8.3:26641202-26641221 | MS.gene87444:CDS | 25.0% |
| ! | TGAAAAGCCAATAGAATAAA+AGG | + | chr8.3:26642273-26642292 | None:intergenic | 25.0% |
| !! | TCAAGTTGTCAAGATTATAA+AGG | + | chr8.3:26642302-26642321 | None:intergenic | 25.0% |
| !! | TTGATTTTTAAATGTATGGC+AGG | - | chr8.3:26642318-26642337 | MS.gene87444:intron | 25.0% |
| !!! | ATTAAAAGATTTCTAGTCCT+TGG | - | chr8.3:26641671-26641690 | MS.gene87444:intron | 25.0% |
| AGCTGATATTCAACATTCAT+AGG | + | chr8.3:26641442-26641461 | None:intergenic | 30.0% | |
| ATCGAAAAACTCATAGGAAA+TGG | + | chr8.3:26642492-26642511 | None:intergenic | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | + | chr8.3:26641155-26641174 | None:intergenic | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | - | chr8.3:26641148-26641167 | MS.gene87444:CDS | 30.0% | |
| CATTGTCTTAGAAAAAGAGA+TGG | + | chr8.3:26641378-26641397 | None:intergenic | 30.0% | |
| TAACATTGTTACCACTATTC+AGG | - | chr8.3:26642547-26642566 | MS.gene87444:intron | 30.0% | |
| TATTAGCTGCCAAAAAGATA+AGG | - | chr8.3:26642144-26642163 | MS.gene87444:intron | 30.0% | |
| TCAGCAATGAAATACTTACA+TGG | + | chr8.3:26641349-26641368 | None:intergenic | 30.0% | |
| TTAGAATTAAACATCCCACT+TGG | + | chr8.3:26642422-26642441 | None:intergenic | 30.0% | |
| TTCTACAGGAGAATCATTAT+GGG | + | chr8.3:26642843-26642862 | None:intergenic | 30.0% | |
| TTGTCAAGATTATAAAGGGA+TGG | + | chr8.3:26642297-26642316 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAAGTC+AGG | - | chr8.3:26642216-26642235 | MS.gene87444:intron | 30.0% |
| ! | ATCACATACAGTGCTTTATT+AGG | - | chr8.3:26641278-26641297 | MS.gene87444:CDS | 30.0% |
| ! | CCTTTTATCGAAAAACTCAT+AGG | + | chr8.3:26642498-26642517 | None:intergenic | 30.0% |
| ! | CTTACTTACCCTAAGTTTTT+GGG | - | chr8.3:26641460-26641479 | MS.gene87444:CDS | 30.0% |
| ! | GTTACTTGCTCTAAATGTAT+AGG | - | chr8.3:26641756-26641775 | MS.gene87444:intron | 30.0% |
| ! | TTACATGTTCTAAACTGAGA+AGG | + | chr8.3:26641588-26641607 | None:intergenic | 30.0% |
| ! | TTCTCAGTTTAGAACATGTA+AGG | - | chr8.3:26641587-26641606 | MS.gene87444:intron | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | + | chr8.3:26642213-26642232 | None:intergenic | 30.0% |
| !! | CCTATGAGTTTTTCGATAAA+AGG | - | chr8.3:26642495-26642514 | MS.gene87444:CDS | 30.0% |
| !! | TGTATTTAAGCAGCTTGTTT+TGG | - | chr8.3:26642078-26642097 | MS.gene87444:intron | 30.0% |
| AAACTCAAGGGGATGAAAAA+TGG | - | chr8.3:26640849-26640868 | MS.gene87444:CDS | 35.0% | |
| AAGTTACATCCAATGCAACA+TGG | + | chr8.3:26640932-26640951 | None:intergenic | 35.0% | |
| AGTTACATCCAATGCAACAT+GGG | + | chr8.3:26640931-26640950 | None:intergenic | 35.0% | |
| ATACCTGTTGTACTTAGGTT+TGG | - | chr8.3:26641321-26641340 | MS.gene87444:CDS | 35.0% | |
| ATATCCAAAAGCAATTCAGG+AGG | + | chr8.3:26640993-26641012 | None:intergenic | 35.0% | |
| ATGATGCAGTACATTCTTCT+TGG | + | chr8.3:26642521-26642540 | None:intergenic | 35.0% | |
| ATTGTTACCACTATTCAGGA+AGG | - | chr8.3:26642551-26642570 | MS.gene87444:intron | 35.0% | |
| ATTTGTATCAGACCAGAAAG+TGG | + | chr8.3:26641189-26641208 | None:intergenic | 35.0% | |
| CACTGTATGTGATAATCACT+GGG | + | chr8.3:26641271-26641290 | None:intergenic | 35.0% | |
| CGGAAAAGACATATTCGTTA+TGG | - | chr8.3:26642895-26642914 | MS.gene87444:CDS | 35.0% | |
| GTTCTACAGGAGAATCATTA+TGG | + | chr8.3:26642844-26642863 | None:intergenic | 35.0% | |
| TAAGCAGACAGTTACACAAA+CGG | + | chr8.3:26641900-26641919 | None:intergenic | 35.0% | |
| TCTACATACCTGTTGTACTT+AGG | - | chr8.3:26641316-26641335 | MS.gene87444:CDS | 35.0% | |
| TGAATTATTCTCCCACTTTC+TGG | - | chr8.3:26641174-26641193 | MS.gene87444:CDS | 35.0% | |
| TTAGGTAACAATGTTGGAGA+CGG | + | chr8.3:26642587-26642606 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAAATCT+TGG | - | chr8.3:26641024-26641043 | MS.gene87444:CDS | 35.0% | |
| TTGTTACCACTATTCAGGAA+GGG | - | chr8.3:26642552-26642571 | MS.gene87444:intron | 35.0% | |
| TTTGTATCAGACCAGAAAGT+GGG | + | chr8.3:26641188-26641207 | None:intergenic | 35.0% | |
| ! | AACCAAATTTTCGACCAAGT+GGG | - | chr8.3:26642405-26642424 | MS.gene87444:intron | 35.0% |
| ! | AAGATCGGACCTTATCTTTT+TGG | + | chr8.3:26642156-26642175 | None:intergenic | 35.0% |
| ! | ACATACAGTGCTTTATTAGG+AGG | - | chr8.3:26641281-26641300 | MS.gene87444:CDS | 35.0% |
| ! | GCTTACTTACCCTAAGTTTT+TGG | - | chr8.3:26641459-26641478 | MS.gene87444:CDS | 35.0% |
| ! | GCTTTTGGATATAATCCGTA+GGG | - | chr8.3:26641001-26641020 | MS.gene87444:CDS | 35.0% |
| ! | TGCTTTTGGATATAATCCGT+AGG | - | chr8.3:26641000-26641019 | MS.gene87444:CDS | 35.0% |
| ! | TGTTGGTGTTTAGACTTCAT+GGG | - | chr8.3:26642758-26642777 | MS.gene87444:CDS | 35.0% |
| !! | ACAATCGAGATAGCTGATTT+TGG | + | chr8.3:26641635-26641654 | None:intergenic | 35.0% |
| !!! | TTAAGCAGCTTGTTTTGGTT+TGG | - | chr8.3:26642083-26642102 | MS.gene87444:intron | 35.0% |
| AACCACACTTTCTTTCTGCA+AGG | + | chr8.3:26641815-26641834 | None:intergenic | 40.0% | |
| AAGCATAGTGTGCAAACTCA+AGG | - | chr8.3:26640836-26640855 | MS.gene87444:CDS | 40.0% | |
| ACAAAAATCGTCTGTTGCCA+AGG | + | chr8.3:26642186-26642205 | None:intergenic | 40.0% | |
| ACAGGAGAATCATTATGGGA+TGG | + | chr8.3:26642839-26642858 | None:intergenic | 40.0% | |
| AGCATAGTGTGCAAACTCAA+GGG | - | chr8.3:26640837-26640856 | MS.gene87444:CDS | 40.0% | |
| ATCCCACTTGGTCGAAAATT+TGG | + | chr8.3:26642410-26642429 | None:intergenic | 40.0% | |
| ATTCTCCTGTAGAACGAGAA+AGG | - | chr8.3:26642849-26642868 | MS.gene87444:CDS | 40.0% | |
| CAAAAGCAAGGACTGCATAA+GGG | - | chr8.3:26642721-26642740 | MS.gene87444:CDS | 40.0% | |
| CAAGCCAGCAACAAATATGT+TGG | - | chr8.3:26642206-26642225 | MS.gene87444:intron | 40.0% | |
| CATATATGAGCCAGAGCAAA+CGG | + | chr8.3:26641871-26641890 | None:intergenic | 40.0% | |
| CATTGTTGTCTGTTGTGCTT+CGG | - | chr8.3:26641058-26641077 | MS.gene87444:CDS | 40.0% | |
| GCACTGTATGTGATAATCAC+TGG | + | chr8.3:26641272-26641291 | None:intergenic | 40.0% | |
| GCAGAGTCTGAATTTGTCAT+TGG | + | chr8.3:26642659-26642678 | None:intergenic | 40.0% | |
| GTCTTGCAGTTTGGAAAGAT+CGG | - | chr8.3:26642875-26642894 | MS.gene87444:CDS | 40.0% | |
| TAGGTAACAATGTTGGAGAC+GGG | + | chr8.3:26642586-26642605 | None:intergenic | 40.0% | |
| TATGGCAGGTCTGATTTCTT+TGG | - | chr8.3:26642332-26642351 | MS.gene87444:intron | 40.0% | |
| TATGTGATAATCACTGGGAC+CGG | + | chr8.3:26641266-26641285 | None:intergenic | 40.0% | |
| TCAAAAGCAAGGACTGCATA+AGG | - | chr8.3:26642720-26642739 | MS.gene87444:CDS | 40.0% | |
| TCAACTGAAGCCATTCAACA+GGG | - | chr8.3:26640951-26640970 | MS.gene87444:CDS | 40.0% | |
| TGCCAAGGATATGACAAGAT+CGG | + | chr8.3:26642171-26642190 | None:intergenic | 40.0% | |
| TGTTACCACTATTCAGGAAG+GGG | - | chr8.3:26642553-26642572 | MS.gene87444:intron | 40.0% | |
| TTCAACTGAAGCCATTCAAC+AGG | - | chr8.3:26640950-26640969 | MS.gene87444:CDS | 40.0% | |
| TTCTCCTGTAGAACGAGAAA+GGG | - | chr8.3:26642850-26642869 | MS.gene87444:CDS | 40.0% | |
| ! | AAGGGGATGAAAAATGGACT+AGG | - | chr8.3:26640855-26640874 | MS.gene87444:CDS | 40.0% |
| ! | AGGAAATGGTGCTAACAAGA+TGG | + | chr8.3:26642478-26642497 | None:intergenic | 40.0% |
| ! | ATTTATGCGTATGACTAGCC+CGG | - | chr8.3:26641244-26641263 | MS.gene87444:CDS | 40.0% |
| ! | CAACCAAATTTTCGACCAAG+TGG | - | chr8.3:26642404-26642423 | MS.gene87444:intron | 40.0% |
| ! | GTGTTGGTGTTTAGACTTCA+TGG | - | chr8.3:26642757-26642776 | MS.gene87444:CDS | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | - | chr8.3:26640986-26641005 | MS.gene87444:CDS | 40.0% |
| ! | TTGCAGAAAGAAAGTGTGGT+TGG | - | chr8.3:26641814-26641833 | MS.gene87444:intron | 40.0% |
| !! | GTCATTGGACTTTTTCCCTT+CGG | + | chr8.3:26642644-26642663 | None:intergenic | 40.0% |
| !! | TCCTTGCTTTTGAGCAACAA+GGG | + | chr8.3:26642713-26642732 | None:intergenic | 40.0% |
| !! | TTTGGTTTGGCTAGTGAGTT+AGG | + | chr8.3:26641617-26641636 | None:intergenic | 40.0% |
| !!! | CGAGATAGCTGATTTTGGTT+TGG | + | chr8.3:26641630-26641649 | None:intergenic | 40.0% |
| ACCCTTGTTGCTCAAAAGCA+AGG | - | chr8.3:26642709-26642728 | MS.gene87444:CDS | 45.0% | |
| ACTACCCTTTCTCGTTCTAC+AGG | + | chr8.3:26642857-26642876 | None:intergenic | 45.0% | |
| AGACCAAGCATAAGCTCTGT+CGG | - | chr8.3:26640898-26640917 | MS.gene87444:CDS | 45.0% | |
| AGCCTTGCAGAAAGAAAGTG+TGG | - | chr8.3:26641810-26641829 | MS.gene87444:intron | 45.0% | |
| AGGTAACAATGTTGGAGACG+GGG | + | chr8.3:26642585-26642604 | None:intergenic | 45.0% | |
| ATGTGATAATCACTGGGACC+GGG | + | chr8.3:26641265-26641284 | None:intergenic | 45.0% | |
| CACAACAGACAACAATGGCA+CGG | + | chr8.3:26641055-26641074 | None:intergenic | 45.0% | |
| CGAAGCACAACAGACAACAA+TGG | + | chr8.3:26641060-26641079 | None:intergenic | 45.0% | |
| CTACATGCTCGAACTCTTCT+TGG | + | chr8.3:26642455-26642474 | None:intergenic | 45.0% | |
| CTTCGGTATGTAAATCGTGG+AGG | - | chr8.3:26641075-26641094 | MS.gene87444:CDS | 45.0% | |
| CTTGACACTCTCTAACGTGA+TGG | + | chr8.3:26641102-26641121 | None:intergenic | 45.0% | |
| GACAAAGTCCCATGTTGCAT+TGG | - | chr8.3:26640920-26640939 | MS.gene87444:CDS | 45.0% | |
| GCATAGTGTGCAAACTCAAG+GGG | - | chr8.3:26640838-26640857 | MS.gene87444:CDS | 45.0% | |
| GCTCCAAACCTAAGTACAAC+AGG | + | chr8.3:26641327-26641346 | None:intergenic | 45.0% | |
| GTCCGATCTTGTCATATCCT+TGG | - | chr8.3:26642166-26642185 | MS.gene87444:intron | 45.0% | |
| GTGCTTCGGTATGTAAATCG+TGG | - | chr8.3:26641072-26641091 | MS.gene87444:CDS | 45.0% | |
| GTTACCACTATTCAGGAAGG+GGG | - | chr8.3:26642554-26642573 | MS.gene87444:intron | 45.0% | |
| TCTCAATTGCGTCAAGCAGA+TGG | + | chr8.3:26642957-26642976 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | + | chr8.3:26641019-26641038 | None:intergenic | 45.0% | |
| ! | GAAAGGGTAGTCTTGCAGTT+TGG | - | chr8.3:26642866-26642885 | MS.gene87444:CDS | 45.0% |
| ! | TGCTTTTGAGCAACAAGGGT+TGG | + | chr8.3:26642709-26642728 | None:intergenic | 45.0% |
| !! | GTCCTTGCTTTTGAGCAACA+AGG | + | chr8.3:26642714-26642733 | None:intergenic | 45.0% |
| !! | TCAGTCCTAGTAGCTCTGAT+GGG | + | chr8.3:26642685-26642704 | None:intergenic | 45.0% |
| !!! | TTATTTATTTATTTTCATTT+AGG | - | chr8.3:26641995-26642014 | MS.gene87444:intron | 5.0% |
| AAGCCATTCAACAGGGACAG+TGG | - | chr8.3:26640958-26640977 | MS.gene87444:CDS | 50.0% | |
| AGCCATTCAACAGGGACAGT+GGG | - | chr8.3:26640959-26640978 | MS.gene87444:CDS | 50.0% | |
| CAGAGCAAACGGTTACAAGC+GGG | + | chr8.3:26641860-26641879 | None:intergenic | 50.0% | |
| CCAGAGCAAACGGTTACAAG+CGG | + | chr8.3:26641861-26641880 | None:intergenic | 50.0% | |
| GAGAGTGAGAAATCTTGGCC+TGG | - | chr8.3:26641029-26641048 | MS.gene87444:CDS | 50.0% | |
| GGTTGAACTGCAGCATCATG+TGG | + | chr8.3:26642389-26642408 | None:intergenic | 50.0% | |
| GTAAGCGTTCCACATTGCTG+AGG | + | chr8.3:26641128-26641147 | None:intergenic | 50.0% | |
| GTCAAGACTCCTCAGCAATG+TGG | - | chr8.3:26641116-26641135 | MS.gene87444:CDS | 50.0% | |
| GTTTCCCCCTTCCTGAATAG+TGG | + | chr8.3:26642561-26642580 | None:intergenic | 50.0% | |
| TGAACTGCAGCATCATGTGG+AGG | + | chr8.3:26642386-26642405 | None:intergenic | 50.0% | |
| TGTCCGACAGAGCTTATGCT+TGG | + | chr8.3:26640904-26640923 | None:intergenic | 50.0% | |
| !! | CTCAGTCCTAGTAGCTCTGA+TGG | + | chr8.3:26642686-26642705 | None:intergenic | 50.0% |
| !! | GGTGCTGGTGAAGGAGAAAA+AGG | + | chr8.3:26642623-26642642 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr8.3:26642932-26642951 | None:intergenic | 55.0% | |
| CCGCTTGTAACCGTTTGCTC+TGG | - | chr8.3:26641858-26641877 | MS.gene87444:intron | 55.0% | |
| TCAAGCAGATGGCGAAGGCT+TGG | + | chr8.3:26642946-26642965 | None:intergenic | 55.0% | |
| TGCCCACTGTCCCTGTTGAA+TGG | + | chr8.3:26640964-26640983 | None:intergenic | 55.0% | |
| TTGCGTCAAGCAGATGGCGA+AGG | + | chr8.3:26642951-26642970 | None:intergenic | 55.0% | |
| ! | GGGATGAGCAGCGAAAGTGT+TGG | - | chr8.3:26642741-26642760 | MS.gene87444:CDS | 55.0% |
| ! | TCTCCTTCACCAGCACCGAA+GGG | - | chr8.3:26642626-26642645 | MS.gene87444:intron | 55.0% |
| ! | TTCTCCTTCACCAGCACCGA+AGG | - | chr8.3:26642625-26642644 | MS.gene87444:intron | 55.0% |
| !! | GGACTTTTTCCCTTCGGTGC+TGG | + | chr8.3:26642638-26642657 | None:intergenic | 55.0% |
| !! | TTTCCCTTCGGTGCTGGTGA+AGG | + | chr8.3:26642632-26642651 | None:intergenic | 55.0% |
| CAGACAACAATGGCACGGCC+AGG | + | chr8.3:26641050-26641069 | None:intergenic | 60.0% | |
| GCACGCCCATCAGAGCTACT+AGG | - | chr8.3:26642677-26642696 | MS.gene87444:CDS | 60.0% | |
| GCAGATGGCGAAGGCTTGGA+AGG | + | chr8.3:26642942-26642961 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26640825 | 26642997 | 26640825 | ID=MS.gene87444 |
| chr8.3 | mRNA | 26640825 | 26642997 | 26640825 | ID=MS.gene87444.t1;Parent=MS.gene87444 |
| chr8.3 | exon | 26642653 | 26642997 | 26642653 | ID=MS.gene87444.t1.exon1;Parent=MS.gene87444.t1 |
| chr8.3 | CDS | 26642653 | 26642997 | 26642653 | ID=cds.MS.gene87444.t1;Parent=MS.gene87444.t1 |
| chr8.3 | exon | 26642473 | 26642522 | 26642473 | ID=MS.gene87444.t1.exon2;Parent=MS.gene87444.t1 |
| chr8.3 | CDS | 26642473 | 26642522 | 26642473 | ID=cds.MS.gene87444.t1;Parent=MS.gene87444.t1 |
| chr8.3 | exon | 26640825 | 26641482 | 26640825 | ID=MS.gene87444.t1.exon3;Parent=MS.gene87444.t1 |
| chr8.3 | CDS | 26640825 | 26641482 | 26640825 | ID=cds.MS.gene87444.t1;Parent=MS.gene87444.t1 |
| Gene Sequence |
| Protein sequence |
