Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87445.t1 | XP_013441754.1 | 87.1 | 295 | 37 | 1 | 1 | 294 | 1 | 295 | 8.60E-144 | 520.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87445.t1 | Q8GVE5 | 38.7 | 388 | 141 | 8 | 307 | 602 | 1 | 383 | 4.0e-57 | 224.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87445.t1 | A0A072TE13 | 87.1 | 295 | 37 | 1 | 1 | 294 | 1 | 295 | 6.2e-144 | 520.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene87445.t1 | TF | TUB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87445.t1 | MTR_0558s0020 | 87.119 | 295 | 37 | 1 | 1 | 294 | 1 | 295 | 0.0 | 539 |
MS.gene87445.t1 | MTR_1g083640 | 82.394 | 284 | 34 | 1 | 1 | 268 | 1 | 284 | 4.19e-171 | 488 |
MS.gene87445.t1 | MTR_8g446020 | 73.810 | 294 | 38 | 1 | 1 | 294 | 1 | 255 | 2.62e-151 | 436 |
MS.gene87445.t1 | MTR_2g014100 | 81.633 | 245 | 36 | 1 | 1 | 236 | 1 | 245 | 4.47e-142 | 412 |
MS.gene87445.t1 | MTR_6g090505 | 82.627 | 236 | 41 | 0 | 65 | 300 | 1 | 236 | 7.87e-142 | 416 |
MS.gene87445.t1 | MTR_8g077640 | 59.544 | 351 | 95 | 5 | 300 | 603 | 34 | 384 | 2.75e-126 | 377 |
MS.gene87445.t1 | MTR_0337s0040 | 71.264 | 261 | 35 | 2 | 1 | 260 | 1 | 222 | 2.33e-123 | 363 |
MS.gene87445.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 2.46e-118 | 350 |
MS.gene87445.t1 | MTR_4g040430 | 82.673 | 202 | 31 | 1 | 1 | 202 | 1 | 198 | 4.53e-116 | 343 |
MS.gene87445.t1 | MTR_5g071590 | 73.596 | 178 | 34 | 2 | 1 | 165 | 1 | 178 | 3.03e-88 | 272 |
MS.gene87445.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 91 | 232 | 3 | 144 | 1.32e-86 | 266 |
MS.gene87445.t1 | MTR_0019s0290 | 80.921 | 152 | 29 | 0 | 82 | 233 | 9 | 160 | 3.74e-84 | 260 |
MS.gene87445.t1 | MTR_8g077195 | 66.176 | 204 | 57 | 4 | 307 | 498 | 1 | 204 | 1.63e-80 | 260 |
MS.gene87445.t1 | MTR_8g077195 | 45.669 | 127 | 48 | 2 | 496 | 602 | 277 | 402 | 5.33e-23 | 102 |
MS.gene87445.t1 | MTR_8g077675 | 65.152 | 198 | 61 | 4 | 307 | 498 | 1 | 196 | 1.37e-76 | 249 |
MS.gene87445.t1 | MTR_5g020580 | 56.796 | 206 | 75 | 4 | 307 | 498 | 1 | 206 | 1.41e-69 | 231 |
MS.gene87445.t1 | MTR_5g020580 | 52.747 | 91 | 42 | 1 | 512 | 602 | 317 | 406 | 1.96e-19 | 91.7 |
MS.gene87445.t1 | MTR_8g077620 | 60.500 | 200 | 70 | 4 | 307 | 498 | 1 | 199 | 5.89e-67 | 223 |
MS.gene87445.t1 | MTR_8g077620 | 44.248 | 113 | 54 | 4 | 498 | 602 | 272 | 383 | 1.41e-17 | 85.5 |
MS.gene87445.t1 | MTR_1281s0010 | 79.817 | 109 | 22 | 0 | 19 | 127 | 1 | 109 | 2.47e-56 | 186 |
MS.gene87445.t1 | MTR_1g022370 | 50.450 | 222 | 80 | 4 | 307 | 498 | 1 | 222 | 3.52e-56 | 196 |
MS.gene87445.t1 | MTR_1g022370 | 52.326 | 86 | 40 | 1 | 517 | 602 | 328 | 412 | 1.20e-16 | 82.8 |
MS.gene87445.t1 | MTR_8g077650 | 38.012 | 342 | 102 | 11 | 345 | 602 | 11 | 326 | 4.10e-47 | 169 |
MS.gene87445.t1 | MTR_2g020280 | 44.059 | 202 | 107 | 2 | 346 | 541 | 32 | 233 | 7.79e-47 | 169 |
MS.gene87445.t1 | MTR_2g020280 | 41.667 | 84 | 46 | 2 | 519 | 602 | 303 | 383 | 5.29e-11 | 65.1 |
MS.gene87445.t1 | MTR_2g076200 | 50.314 | 159 | 73 | 2 | 346 | 498 | 35 | 193 | 2.72e-44 | 162 |
MS.gene87445.t1 | MTR_2g076200 | 46.988 | 83 | 43 | 1 | 520 | 602 | 280 | 361 | 1.45e-12 | 70.1 |
MS.gene87445.t1 | MTR_1g098790 | 48.503 | 167 | 79 | 2 | 348 | 507 | 48 | 214 | 5.13e-43 | 160 |
MS.gene87445.t1 | MTR_2g007930 | 47.904 | 167 | 80 | 2 | 348 | 507 | 49 | 215 | 1.06e-42 | 159 |
MS.gene87445.t1 | MTR_2g007930 | 43.333 | 90 | 44 | 2 | 519 | 602 | 329 | 417 | 7.44e-12 | 68.2 |
MS.gene87445.t1 | MTR_1g088960 | 39.810 | 211 | 118 | 4 | 307 | 508 | 1 | 211 | 2.87e-42 | 157 |
MS.gene87445.t1 | MTR_1g088960 | 45.361 | 97 | 49 | 3 | 506 | 602 | 300 | 392 | 1.54e-13 | 73.2 |
MS.gene87445.t1 | MTR_1g023800 | 52.143 | 140 | 62 | 2 | 307 | 441 | 1 | 140 | 1.48e-37 | 137 |
MS.gene87445.t1 | MTR_2g076210 | 44.586 | 157 | 81 | 2 | 346 | 496 | 30 | 186 | 4.44e-35 | 136 |
MS.gene87445.t1 | MTR_4g008820 | 70.707 | 99 | 28 | 1 | 1 | 98 | 125 | 223 | 2.94e-32 | 132 |
MS.gene87445.t1 | MTR_8g046060 | 76.136 | 88 | 12 | 1 | 1 | 79 | 91 | 178 | 1.22e-31 | 122 |
MS.gene87445.t1 | MTR_6g051425 | 32.129 | 249 | 154 | 4 | 40 | 288 | 22 | 255 | 4.46e-31 | 124 |
MS.gene87445.t1 | MTR_1g070355 | 28.063 | 253 | 159 | 6 | 41 | 291 | 80 | 311 | 4.46e-19 | 91.3 |
MS.gene87445.t1 | MTR_2g020280 | 38.060 | 134 | 77 | 2 | 414 | 541 | 1 | 134 | 4.88e-19 | 88.6 |
MS.gene87445.t1 | MTR_2g020280 | 41.667 | 84 | 46 | 2 | 519 | 602 | 204 | 284 | 3.66e-11 | 64.7 |
MS.gene87445.t1 | MTR_0337s0050 | 73.684 | 38 | 10 | 0 | 259 | 296 | 14 | 51 | 4.38e-15 | 70.9 |
MS.gene87445.t1 | MTR_0402s0040 | 24.865 | 185 | 120 | 4 | 49 | 233 | 40 | 205 | 1.59e-13 | 73.6 |
MS.gene87445.t1 | MTR_4g035820 | 22.945 | 292 | 189 | 8 | 17 | 301 | 61 | 323 | 1.32e-12 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87445.t1 | AT2G18280 | 50.990 | 202 | 84 | 4 | 307 | 497 | 1 | 198 | 3.98e-56 | 195 |
MS.gene87445.t1 | AT2G18280 | 44.211 | 95 | 49 | 2 | 508 | 602 | 293 | 383 | 3.49e-15 | 78.2 |
MS.gene87445.t1 | AT2G18280 | 50.990 | 202 | 84 | 4 | 307 | 497 | 1 | 198 | 3.98e-56 | 195 |
MS.gene87445.t1 | AT2G18280 | 44.211 | 95 | 49 | 2 | 508 | 602 | 293 | 383 | 3.49e-15 | 78.2 |
MS.gene87445.t1 | AT1G47270 | 51.724 | 174 | 77 | 2 | 346 | 512 | 37 | 210 | 8.68e-53 | 186 |
MS.gene87445.t1 | AT1G47270 | 47.191 | 89 | 43 | 2 | 517 | 602 | 291 | 378 | 1.63e-14 | 76.3 |
MS.gene87445.t1 | AT1G47270 | 51.724 | 174 | 77 | 2 | 346 | 512 | 61 | 234 | 1.39e-52 | 186 |
MS.gene87445.t1 | AT1G47270 | 47.191 | 89 | 43 | 2 | 517 | 602 | 315 | 402 | 1.78e-14 | 76.3 |
MS.gene87445.t1 | AT1G47270 | 51.724 | 174 | 77 | 2 | 346 | 512 | 62 | 235 | 1.40e-52 | 186 |
MS.gene87445.t1 | AT1G47270 | 47.191 | 89 | 43 | 2 | 517 | 602 | 316 | 403 | 1.71e-14 | 76.3 |
MS.gene87445.t1 | AT1G76900 | 44.335 | 203 | 99 | 4 | 309 | 499 | 10 | 210 | 2.35e-46 | 170 |
MS.gene87445.t1 | AT1G76900 | 44.335 | 203 | 99 | 4 | 309 | 499 | 10 | 210 | 2.35e-46 | 170 |
MS.gene87445.t1 | AT1G76900 | 44.335 | 203 | 99 | 4 | 309 | 499 | 10 | 210 | 2.35e-46 | 170 |
MS.gene87445.t1 | AT2G47900 | 42.233 | 206 | 105 | 4 | 307 | 499 | 1 | 205 | 3.45e-46 | 168 |
MS.gene87445.t1 | AT2G47900 | 40.000 | 100 | 57 | 3 | 503 | 602 | 300 | 396 | 1.97e-11 | 66.6 |
MS.gene87445.t1 | AT2G47900 | 42.233 | 206 | 105 | 4 | 307 | 499 | 1 | 205 | 3.45e-46 | 168 |
MS.gene87445.t1 | AT2G47900 | 40.000 | 100 | 57 | 3 | 503 | 602 | 300 | 396 | 1.97e-11 | 66.6 |
MS.gene87445.t1 | AT2G47900 | 42.029 | 207 | 105 | 4 | 307 | 499 | 1 | 206 | 5.12e-46 | 168 |
MS.gene87445.t1 | AT2G47900 | 40.000 | 100 | 57 | 3 | 503 | 602 | 301 | 397 | 2.03e-11 | 66.6 |
MS.gene87445.t1 | AT1G25280 | 44.865 | 185 | 95 | 2 | 321 | 498 | 27 | 211 | 3.50e-40 | 152 |
MS.gene87445.t1 | AT1G25280 | 41.905 | 105 | 41 | 3 | 513 | 602 | 336 | 435 | 1.76e-12 | 70.1 |
MS.gene87445.t1 | AT1G53320 | 50.658 | 152 | 69 | 2 | 353 | 498 | 44 | 195 | 9.44e-40 | 150 |
MS.gene87445.t1 | AT1G53320 | 46.988 | 83 | 43 | 1 | 520 | 602 | 288 | 369 | 1.65e-12 | 70.1 |
MS.gene87445.t1 | AT1G43640 | 40.741 | 189 | 100 | 4 | 318 | 499 | 25 | 208 | 4.66e-39 | 149 |
MS.gene87445.t1 | AT3G06380 | 48.344 | 151 | 69 | 5 | 353 | 495 | 33 | 182 | 1.37e-34 | 135 |
MS.gene87445.t1 | AT5G18680 | 44.872 | 156 | 79 | 3 | 347 | 495 | 33 | 188 | 2.28e-32 | 129 |
MS.gene87445.t1 | AT5G18680 | 39.669 | 121 | 62 | 4 | 486 | 602 | 266 | 379 | 2.33e-13 | 72.8 |
MS.gene87445.t1 | AT1G43640 | 44.366 | 142 | 72 | 2 | 365 | 499 | 1 | 142 | 1.84e-31 | 126 |
MS.gene87445.t1 | AT4G38180 | 28.736 | 261 | 168 | 5 | 32 | 292 | 70 | 312 | 3.21e-24 | 108 |
MS.gene87445.t1 | AT1G61940 | 48.837 | 86 | 44 | 0 | 356 | 441 | 1 | 86 | 1.46e-20 | 92.4 |
MS.gene87445.t1 | AT5G28530 | 23.846 | 260 | 168 | 6 | 40 | 287 | 60 | 301 | 5.65e-16 | 82.0 |
MS.gene87445.t1 | AT5G28530 | 23.846 | 260 | 168 | 6 | 40 | 287 | 60 | 301 | 5.77e-16 | 82.0 |
MS.gene87445.t1 | AT5G28530 | 23.846 | 260 | 168 | 6 | 40 | 287 | 60 | 301 | 5.77e-16 | 82.0 |
MS.gene87445.t1 | AT3G06380 | 45.349 | 86 | 41 | 2 | 416 | 495 | 5 | 90 | 2.04e-14 | 74.7 |
MS.gene87445.t1 | AT5G18680 | 44.211 | 95 | 47 | 2 | 407 | 495 | 2 | 96 | 2.16e-14 | 74.7 |
MS.gene87445.t1 | AT5G18680 | 39.669 | 121 | 62 | 4 | 486 | 602 | 174 | 287 | 1.58e-13 | 72.0 |
MS.gene87445.t1 | AT1G25280 | 41.905 | 105 | 41 | 3 | 513 | 602 | 158 | 257 | 4.57e-13 | 70.1 |
MS.gene87445.t1 | AT1G25280 | 41.905 | 105 | 41 | 3 | 513 | 602 | 158 | 257 | 4.57e-13 | 70.1 |
MS.gene87445.t1 | AT1G10240 | 23.462 | 260 | 175 | 7 | 40 | 294 | 53 | 293 | 7.29e-13 | 72.0 |
MS.gene87445.t1 | AT1G10240 | 23.462 | 260 | 175 | 7 | 40 | 294 | 53 | 293 | 7.29e-13 | 72.0 |
MS.gene87445.t1 | AT3G06250 | 24.621 | 264 | 135 | 7 | 34 | 294 | 189 | 391 | 1.68e-12 | 70.9 |
MS.gene87445.t1 | AT3G06250 | 24.621 | 264 | 135 | 7 | 34 | 294 | 189 | 391 | 1.68e-12 | 70.9 |
MS.gene87445.t1 | AT3G06250 | 24.621 | 264 | 135 | 7 | 34 | 294 | 189 | 391 | 1.68e-12 | 70.9 |
MS.gene87445.t1 | AT4G15090 | 26.984 | 252 | 155 | 8 | 50 | 296 | 66 | 293 | 2.78e-12 | 70.5 |
MS.gene87445.t1 | AT4G15090 | 26.984 | 252 | 155 | 8 | 50 | 296 | 66 | 293 | 2.78e-12 | 70.5 |
MS.gene87445.t1 | AT4G15090 | 26.984 | 252 | 155 | 8 | 50 | 296 | 66 | 293 | 2.78e-12 | 70.5 |
MS.gene87445.t1 | AT4G15090 | 26.984 | 252 | 155 | 8 | 50 | 296 | 66 | 293 | 2.78e-12 | 70.5 |
MS.gene87445.t1 | AT4G15090 | 26.984 | 252 | 155 | 8 | 50 | 296 | 66 | 293 | 2.78e-12 | 70.5 |
MS.gene87445.t1 | AT1G61940 | 50.820 | 61 | 30 | 0 | 356 | 416 | 1 | 61 | 2.84e-12 | 67.4 |
MS.gene87445.t1 | AT1G76320 | 24.303 | 251 | 154 | 8 | 50 | 296 | 12 | 230 | 4.57e-11 | 66.2 |
MS.gene87445.t1 | AT1G76320 | 23.664 | 262 | 164 | 8 | 39 | 296 | 1 | 230 | 4.98e-11 | 66.2 |
MS.gene87445.t1 | AT1G76320 | 23.664 | 262 | 164 | 8 | 39 | 296 | 1 | 230 | 5.12e-11 | 66.2 |
MS.gene87445.t1 | AT1G76320 | 23.664 | 262 | 164 | 8 | 39 | 296 | 1 | 230 | 5.12e-11 | 66.2 |
MS.gene87445.t1 | AT2G27110 | 26.829 | 164 | 103 | 4 | 127 | 288 | 108 | 256 | 8.69e-11 | 65.5 |
MS.gene87445.t1 | AT2G27110 | 26.829 | 164 | 103 | 4 | 127 | 288 | 108 | 256 | 8.69e-11 | 65.5 |
Find 101 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTACATTCCTGATGTATT+TGG | 0.157633 | 8.3:+26647190 | MS.gene87445:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 8.3:+26645671 | MS.gene87445:CDS |
ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.3:-26647027 | None:intergenic |
TTTCTCCTACGGTGCAAAAT+TGG | 0.271219 | 8.3:+26647930 | MS.gene87445:CDS |
ATCAAGACTCTTCCGCAATA+TGG | 0.282773 | 8.3:+26646991 | MS.gene87445:CDS |
CATGGCATTGCTTTATTAAG+AGG | 0.337844 | 8.3:+26647156 | MS.gene87445:CDS |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 8.3:-26645721 | None:intergenic |
TTGAAGAGAGTGAGAGATAT+TGG | 0.344771 | 8.3:+26646899 | MS.gene87445:CDS |
GGAAATTGAATCTATTCAAC+AGG | 0.354908 | 8.3:+26646825 | MS.gene87445:CDS |
GTTAAACTCACATCTTGCTT+TGG | 0.356808 | 8.3:+26646804 | MS.gene87445:CDS |
GGCTTTCCTACATGCAAGAT+TGG | 0.361725 | 8.3:-26647953 | None:intergenic |
TCTACCACATGAATTGCTTA+TGG | 0.366512 | 8.3:+26646861 | MS.gene87445:CDS |
TAGCCGCGAAAATGATAAAA+AGG | 0.383747 | 8.3:+26647498 | MS.gene87445:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 8.3:+26645728 | MS.gene87445:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 8.3:+26645720 | MS.gene87445:CDS |
GGTTGGGGCCCTGACTTCAT+TGG | 0.391544 | 8.3:+26647842 | MS.gene87445:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 8.3:-26645191 | None:intergenic |
ATTGTATGGCAGTTAATAAT+AGG | 0.397969 | 8.3:+26647462 | MS.gene87445:intron |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 8.3:-26644952 | None:intergenic |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 8.3:+26644962 | MS.gene87445:CDS |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 8.3:+26645033 | MS.gene87445:CDS |
TGAAAATGGCCAATGAAGTC+AGG | 0.422463 | 8.3:-26647851 | None:intergenic |
ATGTTCTGGTTTAGAATTGA+AGG | 0.427041 | 8.3:+26645807 | MS.gene87445:intron |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8.3:+26645368 | MS.gene87445:CDS |
GGAAGAGCATCACAATGGTT+GGG | 0.430305 | 8.3:+26647826 | MS.gene87445:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 8.3:+26645250 | MS.gene87445:CDS |
GCAGATGGCAAAGGCTTGTA+AGG | 0.442106 | 8.3:-26648023 | None:intergenic |
TGGTTTAGAATTGAAGGCTC+TGG | 0.443098 | 8.3:+26645813 | MS.gene87445:intron |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 8.3:+26645282 | MS.gene87445:CDS |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8.3:+26645233 | MS.gene87445:CDS |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 8.3:+26645116 | MS.gene87445:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 8.3:+26645398 | MS.gene87445:CDS |
GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.3:+26646947 | MS.gene87445:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 8.3:+26644887 | MS.gene87445:CDS |
TTTGCCATCTGCTTGATTCG+TGG | 0.452748 | 8.3:+26648034 | MS.gene87445:CDS |
ATCTATTCAACAGGGACAAT+GGG | 0.454866 | 8.3:+26646834 | MS.gene87445:CDS |
ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.3:+26647023 | MS.gene87445:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 8.3:+26645082 | MS.gene87445:CDS |
GGGAAGAGCATCACAATGGT+TGG | 0.483765 | 8.3:+26647825 | MS.gene87445:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 8.3:-26645227 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 8.3:+26645020 | MS.gene87445:CDS |
TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 8.3:+26645511 | MS.gene87445:CDS |
CATGGATAAGCACGGGGACC+AGG | 0.488976 | 8.3:-26647137 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 8.3:+26645076 | MS.gene87445:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 8.3:+26645524 | MS.gene87445:CDS |
TACACTGCTCCAAATACATC+AGG | 0.498166 | 8.3:-26647199 | None:intergenic |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 8.3:-26645616 | None:intergenic |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 8.3:-26645482 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 8.3:+26645286 | MS.gene87445:CDS |
AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 8.3:-26645326 | None:intergenic |
AGTCAAGGATATGACGAAGT+TGG | 0.525647 | 8.3:-26647522 | None:intergenic |
CTGGTCCCCGTGCTTATCCA+TGG | 0.526433 | 8.3:+26647138 | MS.gene87445:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 8.3:+26645127 | MS.gene87445:CDS |
AATCTATTCAACAGGGACAA+TGG | 0.538550 | 8.3:+26646833 | MS.gene87445:CDS |
ATCTCGTAATGTTTCTCCTA+CGG | 0.539696 | 8.3:+26647919 | MS.gene87445:CDS |
AATGAGACTTGGCTCAGTGC+TGG | 0.542748 | 8.3:-26647767 | None:intergenic |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 8.3:+26644952 | MS.gene87445:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8.3:+26645128 | MS.gene87445:CDS |
TTGTGTTGCTACCGGAAACA+TGG | 0.547571 | 8.3:+26646696 | MS.gene87445:CDS |
AACTTCGTCATATCCTTGAC+TGG | 0.547745 | 8.3:+26647524 | MS.gene87445:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 8.3:+26645430 | MS.gene87445:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 8.3:+26645578 | MS.gene87445:CDS |
GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 8.3:+26645451 | MS.gene87445:CDS |
AAAGTTTCATCAAATACAGA+AGG | 0.566100 | 8.3:-26647734 | None:intergenic |
GAAGAGCATCACAATGGTTG+GGG | 0.571615 | 8.3:+26647827 | MS.gene87445:CDS |
TAAAGGTCTCAAATGAGACT+TGG | 0.571910 | 8.3:-26647778 | None:intergenic |
GCAATGCCATGGATAAGCAC+GGG | 0.572431 | 8.3:-26647144 | None:intergenic |
CTCTTAATAAAGCAATGCCA+TGG | 0.575671 | 8.3:-26647155 | None:intergenic |
TGCTTATGGACATAATCCGT+AGG | 0.579102 | 8.3:+26646875 | MS.gene87445:CDS |
GCTTATGGACATAATCCGTA+GGG | 0.581218 | 8.3:+26646876 | MS.gene87445:CDS |
AAGACAACAGCAGAACGCGC+AGG | 0.588296 | 8.3:-26646922 | None:intergenic |
GAAAATGGCCAATGAAGTCA+GGG | 0.594963 | 8.3:-26647850 | None:intergenic |
ATGGCATTGAAAAGCATGGT+CGG | 0.597357 | 8.3:+26646715 | MS.gene87445:CDS |
AATTGGCCAATCTTGCATGT+AGG | 0.601422 | 8.3:+26647947 | MS.gene87445:CDS |
GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 8.3:+26645443 | MS.gene87445:CDS |
GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 8.3:+26645517 | MS.gene87445:CDS |
ACGAATCAAGCAGATGGCAA+AGG | 0.605785 | 8.3:-26648032 | None:intergenic |
GAGTGGATAAGCGTAGTACA+TGG | 0.606543 | 8.3:-26647996 | None:intergenic |
AGCAATGCCATGGATAAGCA+CGG | 0.608496 | 8.3:-26647145 | None:intergenic |
ACAAATATGTTTGTAAACTG+AGG | 0.610066 | 8.3:+26647570 | MS.gene87445:CDS |
GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 8.3:+26645520 | MS.gene87445:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 8.3:+26644876 | MS.gene87445:CDS |
ACTTGGCTCAGTGCTGGTGA+AGG | 0.615559 | 8.3:-26647761 | None:intergenic |
TCTCACTCTCTTCAACCCTA+CGG | 0.618635 | 8.3:-26646891 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 8.3:-26645176 | None:intergenic |
GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 8.3:+26645446 | MS.gene87445:CDS |
AAACATGGCATTGAAAAGCA+TGG | 0.621790 | 8.3:+26646711 | MS.gene87445:CDS |
TGAAAATTCAGTTATTGACG+TGG | 0.624344 | 8.3:+26644911 | MS.gene87445:CDS |
AAGGCTTGTAAGGCAGAGAG+TGG | 0.626029 | 8.3:-26648013 | None:intergenic |
TATGCCACGAATCAAGCAGA+TGG | 0.633849 | 8.3:-26648038 | None:intergenic |
AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 8.3:+26645431 | MS.gene87445:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 8.3:+26645285 | MS.gene87445:CDS |
ACTGTCGTATAGAGTGAACT+TGG | 0.646011 | 8.3:-26647708 | None:intergenic |
TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 8.3:+26645437 | MS.gene87445:CDS |
GCATGGTCGGAGAACTCAAG+CGG | 0.657328 | 8.3:+26646728 | MS.gene87445:CDS |
GAAATTGAATCTATTCAACA+GGG | 0.671920 | 8.3:+26646826 | MS.gene87445:CDS |
CAATGCCATGGATAAGCACG+GGG | 0.702540 | 8.3:-26647143 | None:intergenic |
AGATGGGAAGAGCATCACAA+TGG | 0.704024 | 8.3:+26647821 | MS.gene87445:CDS |
AATGTGATCATTCCATATTG+CGG | 0.704632 | 8.3:-26647003 | None:intergenic |
ATGTCCATAAGCAATTCATG+TGG | 0.710807 | 8.3:-26646865 | None:intergenic |
CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.3:+26646950 | MS.gene87445:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAATATTTGTATTTGTT+TGG | + | chr8.3:26646600-26646619 | MS.gene87445:intron | 10.0% |
!! | ATAGCATAAAAATATTAACA+AGG | - | chr8.3:26646182-26646201 | None:intergenic | 15.0% |
!! | ATTAACAAGGTTTATTATTA+TGG | - | chr8.3:26646169-26646188 | None:intergenic | 15.0% |
!!! | AGTTTAAGTTATTATAAAGA+TGG | + | chr8.3:26646331-26646350 | MS.gene87445:intron | 15.0% |
!!! | CAATTTGATTTATAAACATA+CGG | + | chr8.3:26647665-26647684 | MS.gene87445:intron | 15.0% |
!!! | GTTTAAGTTATTATAAAGAT+GGG | + | chr8.3:26646332-26646351 | MS.gene87445:intron | 15.0% |
!! | AAGTAACAAAATCAATGATA+TGG | + | chr8.3:26646396-26646415 | MS.gene87445:intron | 20.0% |
!! | ATCAAATTGTGAGTATTATA+AGG | - | chr8.3:26647654-26647673 | None:intergenic | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr8.3:26645076-26645095 | MS.gene87445:CDS | 20.0% |
!! | TATCATCAAACAAACAAAAT+TGG | - | chr8.3:26646519-26646538 | None:intergenic | 20.0% |
!! | TCAAATTGTGAGTATTATAA+GGG | - | chr8.3:26647653-26647672 | None:intergenic | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | + | chr8.3:26645282-26645301 | MS.gene87445:CDS | 20.0% |
!! | TGATAGTAACAAAAATACAA+AGG | - | chr8.3:26646642-26646661 | None:intergenic | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr8.3:26645020-26645039 | MS.gene87445:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr8.3:26645903-26645922 | MS.gene87445:intron | 20.0% |
!!! | GTGAATATATTTTTTCTAAC+TGG | - | chr8.3:26647977-26647996 | None:intergenic | 20.0% |
!!! | TATCATTGATTTTGTTACTT+AGG | - | chr8.3:26646396-26646415 | None:intergenic | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr8.3:26645875-26645894 | MS.gene87445:intron | 20.0% |
! | AAAAATGGAATATCAAAGCA+GGG | + | chr8.3:26646754-26646773 | MS.gene87445:CDS | 25.0% |
! | AAAGTTTCATCAAATACAGA+AGG | - | chr8.3:26647737-26647756 | None:intergenic | 25.0% |
! | AAATTGTGAGTATTATAAGG+GGG | - | chr8.3:26647651-26647670 | None:intergenic | 25.0% |
! | AAGAGAACAAAAAAATCATG+AGG | - | chr8.3:26647097-26647116 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr8.3:26645082-26645101 | MS.gene87445:CDS | 25.0% |
! | ACAAATATGTTTGTAAACTG+AGG | + | chr8.3:26647570-26647589 | MS.gene87445:CDS | 25.0% |
! | ACATAAATACTCATTGGATT+AGG | + | chr8.3:26646207-26646226 | MS.gene87445:intron | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr8.3:26645720-26645739 | MS.gene87445:CDS | 25.0% |
! | AGAGAACAAAAAAATCATGA+GGG | - | chr8.3:26647096-26647115 | None:intergenic | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr8.3:26645746-26645765 | None:intergenic | 25.0% |
! | ATATTCACTGTGTTTGAAAA+AGG | - | chr8.3:26647252-26647271 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | + | chr8.3:26645285-26645304 | MS.gene87445:CDS | 25.0% |
! | ATTGTATGGCAGTTAATAAT+AGG | + | chr8.3:26647462-26647481 | MS.gene87445:intron | 25.0% |
! | CAAATTGTGAGTATTATAAG+GGG | - | chr8.3:26647652-26647671 | None:intergenic | 25.0% |
! | GAAATTGAATCTATTCAACA+GGG | + | chr8.3:26646826-26646845 | MS.gene87445:CDS | 25.0% |
! | TAAAAATGGAATATCAAAGC+AGG | + | chr8.3:26646753-26646772 | MS.gene87445:CDS | 25.0% |
! | TAAAGCACATAAATACTCAT+TGG | + | chr8.3:26646201-26646220 | MS.gene87445:intron | 25.0% |
! | TATTCACTGTGTTTGAAAAA+GGG | - | chr8.3:26647251-26647270 | None:intergenic | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr8.3:26645793-26645812 | MS.gene87445:intron | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | + | chr8.3:26645286-26645305 | MS.gene87445:CDS | 25.0% |
!! | AGAATTTAGAATTGTGCATT+TGG | + | chr8.3:26646661-26646680 | MS.gene87445:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr8.3:26645895-26645914 | MS.gene87445:intron | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr8.3:26645633-26645652 | MS.gene87445:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr8.3:26645634-26645653 | MS.gene87445:CDS | 25.0% |
!!! | AGTCTTGTTTTTCAGTATAA+AGG | - | chr8.3:26647798-26647817 | None:intergenic | 25.0% |
!!! | CATTTTTTTTAGCCTTCTAT+AGG | + | chr8.3:26647614-26647633 | MS.gene87445:intron | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr8.3:26645072-26645091 | None:intergenic | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr8.3:26645398-26645417 | MS.gene87445:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr8.3:26645966-26645985 | None:intergenic | 30.0% | |
AAATGCTCTGCTTTATGTAA+TGG | - | chr8.3:26645329-26645348 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr8.3:26645128-26645147 | MS.gene87445:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr8.3:26645728-26645747 | MS.gene87445:CDS | 30.0% | |
AATGTGATCATTCCATATTG+CGG | - | chr8.3:26647006-26647025 | None:intergenic | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr8.3:26645431-26645450 | MS.gene87445:CDS | 30.0% | |
ATTACCTGCTTCAATGAAAT+AGG | - | chr8.3:26647030-26647049 | None:intergenic | 30.0% | |
ATTTCCTATTTCATTGAAGC+AGG | + | chr8.3:26647023-26647042 | MS.gene87445:CDS | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr8.3:26645671-26645690 | MS.gene87445:CDS | 30.0% | |
CACAAATTCTAAGTCAAGAT+AGG | - | chr8.3:26645933-26645952 | None:intergenic | 30.0% | |
CCATGATTCTTTATCACTAA+AGG | - | chr8.3:26644955-26644974 | None:intergenic | 30.0% | |
CCTTTAGTGATAAAGAATCA+TGG | + | chr8.3:26644952-26644971 | MS.gene87445:CDS | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr8.3:26645832-26645851 | MS.gene87445:intron | 30.0% | |
GAAAAACAAGACTCTTAGAT+GGG | + | chr8.3:26647805-26647824 | MS.gene87445:CDS | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr8.3:26645724-26645743 | None:intergenic | 30.0% | |
GGAAATTGAATCTATTCAAC+AGG | + | chr8.3:26646825-26646844 | MS.gene87445:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr8.3:26645217-26645236 | MS.gene87445:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr8.3:26644962-26644981 | MS.gene87445:CDS | 30.0% | |
TAAATTATTCACCCACTTTC+TGG | + | chr8.3:26647049-26647068 | MS.gene87445:intron | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr8.3:26645127-26645146 | MS.gene87445:CDS | 30.0% | |
TGAAAAACAAGACTCTTAGA+TGG | + | chr8.3:26647804-26647823 | MS.gene87445:CDS | 30.0% | |
TGAAAATTCAGTTATTGACG+TGG | + | chr8.3:26644911-26644930 | MS.gene87445:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr8.3:26645599-26645618 | None:intergenic | 30.0% | |
TTAGAATTGTGCATTTGGAT+TGG | + | chr8.3:26646666-26646685 | MS.gene87445:intron | 30.0% | |
TTCTACATTCCTGATGTATT+TGG | + | chr8.3:26647190-26647209 | MS.gene87445:CDS | 30.0% | |
TTGATTTATAAACATACGGC+AGG | + | chr8.3:26647669-26647688 | MS.gene87445:intron | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr8.3:26645485-26645504 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCTCAA+TGG | + | chr8.3:26646124-26646143 | MS.gene87445:intron | 30.0% | |
! | AAATGAGCAACTCATTTTAG+AGG | - | chr8.3:26646482-26646501 | None:intergenic | 30.0% |
! | AAATGGTAGTTCAATTTTGG+GGG | + | chr8.3:26646364-26646383 | MS.gene87445:intron | 30.0% |
! | ACCAAATGGTAGTTCAATTT+TGG | + | chr8.3:26646361-26646380 | MS.gene87445:intron | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr8.3:26645250-26645269 | MS.gene87445:CDS | 30.0% |
! | CAAATGGTAGTTCAATTTTG+GGG | + | chr8.3:26646363-26646382 | MS.gene87445:intron | 30.0% |
! | CCAAATGGTAGTTCAATTTT+GGG | + | chr8.3:26646362-26646381 | MS.gene87445:intron | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr8.3:26645475-26645494 | MS.gene87445:CDS | 30.0% |
! | TTTGAGCTTGTAACTTTTGT+TGG | + | chr8.3:26647893-26647912 | MS.gene87445:CDS | 30.0% |
!! | AGTCTTGATGATTTCTTTTG+TGG | - | chr8.3:26646980-26646999 | None:intergenic | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr8.3:26645807-26645826 | MS.gene87445:intron | 30.0% |
!! | TTGGTTTGGTTGTAATTGTA+TGG | + | chr8.3:26647448-26647467 | MS.gene87445:intron | 30.0% |
AAGATGGGTATATGACCAAA+TGG | + | chr8.3:26646347-26646366 | MS.gene87445:intron | 35.0% | |
AATCTATTCAACAGGGACAA+TGG | + | chr8.3:26646833-26646852 | MS.gene87445:CDS | 35.0% | |
AGAAAAATCATCTCCAGTCA+AGG | - | chr8.3:26647540-26647559 | None:intergenic | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr8.3:26645033-26645052 | MS.gene87445:CDS | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | + | chr8.3:26644876-26644895 | MS.gene87445:CDS | 35.0% | |
ATCTATTCAACAGGGACAAT+GGG | + | chr8.3:26646834-26646853 | MS.gene87445:CDS | 35.0% | |
ATCTCGTAATGTTTCTCCTA+CGG | + | chr8.3:26647919-26647938 | MS.gene87445:CDS | 35.0% | |
ATGTCCATAAGCAATTCATG+TGG | - | chr8.3:26646868-26646887 | None:intergenic | 35.0% | |
CAAAAAATGCATCTGTTACG+AGG | + | chr8.3:26646576-26646595 | MS.gene87445:intron | 35.0% | |
CATGAGGGAAAAGACTAATT+TGG | - | chr8.3:26647081-26647100 | None:intergenic | 35.0% | |
CCCAAAATTGAACTACCATT+TGG | - | chr8.3:26646365-26646384 | None:intergenic | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr8.3:26645368-26645387 | MS.gene87445:CDS | 35.0% | |
CGTTATGCTTGTAACAAAGA+AGG | + | chr8.3:26645116-26645135 | MS.gene87445:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr8.3:26645216-26645235 | MS.gene87445:CDS | 35.0% | |
CTCTTAATAAAGCAATGCCA+TGG | - | chr8.3:26647158-26647177 | None:intergenic | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr8.3:26645211-26645230 | MS.gene87445:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr8.3:26645430-26645449 | MS.gene87445:CDS | 35.0% | |
GCTGTAAATGCTGTAATCAA+TGG | - | chr8.3:26646455-26646474 | None:intergenic | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr8.3:26645153-26645172 | MS.gene87445:CDS | 35.0% | |
GTTAAACTCACATCTTGCTT+TGG | + | chr8.3:26646804-26646823 | MS.gene87445:CDS | 35.0% | |
TAAAGGTCTCAAATGAGACT+TGG | - | chr8.3:26647781-26647800 | None:intergenic | 35.0% | |
TAATTCAATCGTTGCTGTGT+CGG | - | chr8.3:26646266-26646285 | None:intergenic | 35.0% | |
TAGCCGCGAAAATGATAAAA+AGG | + | chr8.3:26647498-26647517 | MS.gene87445:CDS | 35.0% | |
TCTACCACATGAATTGCTTA+TGG | + | chr8.3:26646861-26646880 | MS.gene87445:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr8.3:26645194-26645213 | None:intergenic | 35.0% | |
TTGAAGAGAGTGAGAGATAT+TGG | + | chr8.3:26646899-26646918 | MS.gene87445:CDS | 35.0% | |
! | AAACATGGCATTGAAAAGCA+TGG | + | chr8.3:26646711-26646730 | MS.gene87445:CDS | 35.0% |
! | AGAGCGAGAATTTTCTCTAT+CGG | + | chr8.3:26646782-26646801 | MS.gene87445:CDS | 35.0% |
! | ATACGGCAGGTCAAATTTTT+GGG | + | chr8.3:26647682-26647701 | MS.gene87445:intron | 35.0% |
! | ATTTGGATTAGACCAGAAAG+TGG | - | chr8.3:26647064-26647083 | None:intergenic | 35.0% |
! | CATGGCATTGCTTTATTAAG+AGG | + | chr8.3:26647156-26647175 | MS.gene87445:CDS | 35.0% |
! | GCACAGTTTTCACTTGAAAA+TGG | - | chr8.3:26647868-26647887 | None:intergenic | 35.0% |
! | GGACCTTTTTATCATTTTCG+CGG | - | chr8.3:26647504-26647523 | None:intergenic | 35.0% |
! | TTTGGATTAGACCAGAAAGT+GGG | - | chr8.3:26647063-26647082 | None:intergenic | 35.0% |
!! | AGCAACTCATTTTAGAGGTT+GGG | - | chr8.3:26646477-26646496 | None:intergenic | 35.0% |
!! | CGTATTTAAGCAGCTTGTTT+TGG | + | chr8.3:26647429-26647448 | MS.gene87445:intron | 35.0% |
!! | CTTGATGATTTCTTTTGTGG+CGG | - | chr8.3:26646977-26646996 | None:intergenic | 35.0% |
!! | GAACTCAAGCGGATTAAAAA+TGG | + | chr8.3:26646739-26646758 | MS.gene87445:CDS | 35.0% |
!!! | TTAAGCAGCTTGTTTTGGTT+TGG | + | chr8.3:26647434-26647453 | MS.gene87445:intron | 35.0% |
AACTTCGTCATATCCTTGAC+TGG | + | chr8.3:26647524-26647543 | MS.gene87445:CDS | 40.0% | |
AATTGGCCAATCTTGCATGT+AGG | + | chr8.3:26647947-26647966 | MS.gene87445:CDS | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr8.3:26646064-26646083 | None:intergenic | 40.0% | |
ACTGTCGTATAGAGTGAACT+TGG | - | chr8.3:26647711-26647730 | None:intergenic | 40.0% | |
ACTTACTTGCTCTACGCTTA+TGG | + | chr8.3:26647342-26647361 | MS.gene87445:intron | 40.0% | |
AGTCAAGGATATGACGAAGT+TGG | - | chr8.3:26647525-26647544 | None:intergenic | 40.0% | |
ATCAAGACTCTTCCGCAATA+TGG | + | chr8.3:26646991-26647010 | MS.gene87445:CDS | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr8.3:26644887-26644906 | MS.gene87445:CDS | 40.0% | |
ATGAAGCACAGACTCATACA+CGG | - | chr8.3:26646311-26646330 | None:intergenic | 40.0% | |
CACTGTGTTTGAAAAAGGGA+TGG | - | chr8.3:26647247-26647266 | None:intergenic | 40.0% | |
CTTCATGTGTATGAATAGCC+TGG | + | chr8.3:26647119-26647138 | MS.gene87445:intron | 40.0% | |
CTTCGGTATGTAAATCATGG+AGG | + | chr8.3:26646950-26646969 | MS.gene87445:CDS | 40.0% | |
GAAAATGGCCAATGAAGTCA+GGG | - | chr8.3:26647853-26647872 | None:intergenic | 40.0% | |
GCTTATGGACATAATCCGTA+GGG | + | chr8.3:26646876-26646895 | MS.gene87445:CDS | 40.0% | |
GTGCTTCGGTATGTAAATCA+TGG | + | chr8.3:26646947-26646966 | MS.gene87445:CDS | 40.0% | |
GTGGAAGAAAAGCCTATAGA+AGG | - | chr8.3:26647629-26647648 | None:intergenic | 40.0% | |
TACACTGCTCCAAATACATC+AGG | - | chr8.3:26647202-26647221 | None:intergenic | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr8.3:26646060-26646079 | MS.gene87445:intron | 40.0% | |
TCTAATGACGACTCGTCAAA+AGG | + | chr8.3:26645511-26645530 | MS.gene87445:CDS | 40.0% | |
TGAAAATGGCCAATGAAGTC+AGG | - | chr8.3:26647854-26647873 | None:intergenic | 40.0% | |
TGCTTATGGACATAATCCGT+AGG | + | chr8.3:26646875-26646894 | MS.gene87445:CDS | 40.0% | |
TTGTGAGTATTATAAGGGGG+TGG | - | chr8.3:26647648-26647667 | None:intergenic | 40.0% | |
TTTCTCCTACGGTGCAAAAT+TGG | + | chr8.3:26647930-26647949 | MS.gene87445:CDS | 40.0% | |
! | ATGGCATTGAAAAGCATGGT+CGG | + | chr8.3:26646715-26646734 | MS.gene87445:CDS | 40.0% |
! | CATACGGCAGGTCAAATTTT+TGG | + | chr8.3:26647681-26647700 | MS.gene87445:intron | 40.0% |
! | GAGCTTGTAACTTTTGTTGG+TGG | + | chr8.3:26647896-26647915 | MS.gene87445:CDS | 40.0% |
! | GCTTTTCAATGCCATGTTTC+CGG | - | chr8.3:26646710-26646729 | None:intergenic | 40.0% |
! | TACGGCAGGTCAAATTTTTG+GGG | + | chr8.3:26647683-26647702 | MS.gene87445:intron | 40.0% |
! | TGCTGTTGTCTTTTGTGCTT+CGG | + | chr8.3:26646933-26646952 | MS.gene87445:CDS | 40.0% |
! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr8.3:26645813-26645832 | MS.gene87445:intron | 40.0% |
!! | GAGCAACTCATTTTAGAGGT+TGG | - | chr8.3:26646478-26646497 | None:intergenic | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr8.3:26645167-26645186 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTGA+AGG | + | chr8.3:26645437-26645456 | MS.gene87445:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr8.3:26645641-26645660 | MS.gene87445:CDS | 40.0% |
AATGAAGCTCTCTCGAAACC+AGG | + | chr8.3:26645578-26645597 | MS.gene87445:CDS | 45.0% | |
ACGAATCAAGCAGATGGCAA+AGG | - | chr8.3:26648035-26648054 | None:intergenic | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr8.3:26645179-26645198 | None:intergenic | 45.0% | |
AGCAATGCCATGGATAAGCA+CGG | - | chr8.3:26647148-26647167 | None:intergenic | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | + | chr8.3:26645946-26645965 | MS.gene87445:intron | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr8.3:26645221-26645240 | MS.gene87445:CDS | 45.0% | |
GAGTGGATAAGCGTAGTACA+TGG | - | chr8.3:26647999-26648018 | None:intergenic | 45.0% | |
GGCTTTCCTACATGCAAGAT+TGG | - | chr8.3:26647956-26647975 | None:intergenic | 45.0% | |
TATGCCACGAATCAAGCAGA+TGG | - | chr8.3:26648041-26648060 | None:intergenic | 45.0% | |
TCTCACTCTCTTCAACCCTA+CGG | - | chr8.3:26646894-26646913 | None:intergenic | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr8.3:26645619-26645638 | None:intergenic | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr8.3:26645230-26645249 | None:intergenic | 45.0% | |
! | ACTCATTGGATTAGGTGTCC+CGG | + | chr8.3:26646215-26646234 | MS.gene87445:intron | 45.0% |
! | ATTGGCCAATTTTGCACCGT+AGG | - | chr8.3:26647938-26647957 | None:intergenic | 45.0% |
! | TTGTGTTGCTACCGGAAACA+TGG | + | chr8.3:26646696-26646715 | MS.gene87445:CDS | 45.0% |
! | TTTGCCATCTGCTTGATTCG+TGG | + | chr8.3:26648034-26648053 | MS.gene87445:CDS | 45.0% |
!! | AGATGGGAAGAGCATCACAA+TGG | + | chr8.3:26647821-26647840 | MS.gene87445:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr8.3:26645233-26645252 | MS.gene87445:CDS | 45.0% |
!! | GAAGAGCATCACAATGGTTG+GGG | + | chr8.3:26647827-26647846 | MS.gene87445:CDS | 45.0% |
!! | GGAAGAGCATCACAATGGTT+GGG | + | chr8.3:26647826-26647845 | MS.gene87445:CDS | 45.0% |
!! | GTGCAGTTTTGTGTTGCTAC+CGG | + | chr8.3:26646688-26646707 | MS.gene87445:intron | 45.0% |
AAGGCTTGTAAGGCAGAGAG+TGG | - | chr8.3:26648016-26648035 | None:intergenic | 50.0% | |
AATGAGACTTGGCTCAGTGC+TGG | - | chr8.3:26647770-26647789 | None:intergenic | 50.0% | |
ACACGATAGGTATCCGTCAC+CGG | - | chr8.3:26646237-26646256 | None:intergenic | 50.0% | |
CAATGCCATGGATAAGCACG+GGG | - | chr8.3:26647146-26647165 | None:intergenic | 50.0% | |
GACGACTCGTCAAAAGGAGA+TGG | + | chr8.3:26645517-26645536 | MS.gene87445:CDS | 50.0% | |
GACTCGTCAAAAGGAGATGG+TGG | + | chr8.3:26645520-26645539 | MS.gene87445:CDS | 50.0% | |
GCAATGCCATGGATAAGCAC+GGG | - | chr8.3:26647147-26647166 | None:intergenic | 50.0% | |
GCAGATGGCAAAGGCTTGTA+AGG | - | chr8.3:26648026-26648045 | None:intergenic | 50.0% | |
!! | GAAGTGATGGGTGAAGGTGT+TGG | + | chr8.3:26645443-26645462 | MS.gene87445:CDS | 50.0% |
!! | GGGAAGAGCATCACAATGGT+TGG | + | chr8.3:26647825-26647844 | MS.gene87445:CDS | 50.0% |
!! | GTGTCGGTGTTAGACACGAT+AGG | - | chr8.3:26646250-26646269 | None:intergenic | 50.0% |
AAGACAACAGCAGAACGCGC+AGG | - | chr8.3:26646925-26646944 | None:intergenic | 55.0% | |
CACGATAGGTATCCGTCACC+GGG | - | chr8.3:26646236-26646255 | None:intergenic | 55.0% | |
GCATGGTCGGAGAACTCAAG+CGG | + | chr8.3:26646728-26646747 | MS.gene87445:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr8.3:26645524-26645543 | MS.gene87445:CDS | 55.0% |
! | TGGATTAGGTGTCCCGGTGA+CGG | + | chr8.3:26646221-26646240 | MS.gene87445:intron | 55.0% |
!! | ACTTGGCTCAGTGCTGGTGA+AGG | - | chr8.3:26647764-26647783 | None:intergenic | 55.0% |
!! | GTGATGGGTGAAGGTGTTGG+AGG | + | chr8.3:26645446-26645465 | MS.gene87445:CDS | 55.0% |
CATGGATAAGCACGGGGACC+AGG | - | chr8.3:26647140-26647159 | None:intergenic | 60.0% | |
CTGGTCCCCGTGCTTATCCA+TGG | + | chr8.3:26647138-26647157 | MS.gene87445:CDS | 60.0% | |
GGTTGGGGCCCTGACTTCAT+TGG | + | chr8.3:26647842-26647861 | MS.gene87445:CDS | 60.0% | |
!! | GGGTGAAGGTGTTGGAGGCA+CGG | + | chr8.3:26645451-26645470 | MS.gene87445:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 26644867 | 26648063 | 26644867 | ID=MS.gene87445 |
chr8.3 | mRNA | 26644867 | 26648063 | 26644867 | ID=MS.gene87445.t1;Parent=MS.gene87445 |
chr8.3 | exon | 26644867 | 26645749 | 26644867 | ID=MS.gene87445.t1.exon1;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26644867 | 26645749 | 26644867 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
chr8.3 | exon | 26645821 | 26645834 | 26645821 | ID=MS.gene87445.t1.exon2;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26645821 | 26645834 | 26645821 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
chr8.3 | exon | 26646694 | 26647044 | 26646694 | ID=MS.gene87445.t1.exon3;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26646694 | 26647044 | 26646694 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
chr8.3 | exon | 26647137 | 26647218 | 26647137 | ID=MS.gene87445.t1.exon4;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26647137 | 26647218 | 26647137 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
chr8.3 | exon | 26647474 | 26647591 | 26647474 | ID=MS.gene87445.t1.exon5;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26647474 | 26647591 | 26647474 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
chr8.3 | exon | 26647691 | 26648063 | 26647691 | ID=MS.gene87445.t1.exon6;Parent=MS.gene87445.t1 |
chr8.3 | CDS | 26647691 | 26648063 | 26647691 | ID=cds.MS.gene87445.t1;Parent=MS.gene87445.t1 |
Gene Sequence |
Protein sequence |