AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87485

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87485.t1 MTR_4g021760 83.758 314 48 2 1 313 1 312 0.0 540
MS.gene87485.t1 MTR_4g021855 66.447 304 90 5 1 295 1 301 3.37e-138 393
MS.gene87485.t1 MTR_4g021845 84.932 219 31 1 1 219 1 217 7.45e-136 384
MS.gene87485.t1 MTR_4g021790 75.620 242 57 1 1 242 1 240 2.52e-128 367
MS.gene87485.t1 MTR_5g055260 59.740 231 64 5 1 231 1 202 4.73e-85 256
MS.gene87485.t1 MTR_4g023980 78.417 139 28 1 55 193 35 171 1.01e-73 225
MS.gene87485.t1 MTR_6g045327 46.758 293 137 8 10 296 14 293 3.11e-71 226
MS.gene87485.t1 MTR_1g032570 37.534 365 161 9 10 309 11 373 9.46e-68 223
MS.gene87485.t1 MTR_3g086100 39.921 253 119 5 10 231 13 263 8.97e-57 192
MS.gene87485.t1 MTR_8g079940 39.623 265 127 6 6 239 21 283 3.05e-56 190
MS.gene87485.t1 MTR_4g121020 36.280 328 174 7 10 308 31 352 2.92e-55 190
MS.gene87485.t1 MTR_4g121020 36.280 328 174 7 10 308 31 352 3.11e-55 190
MS.gene87485.t1 MTR_2g034960 39.245 265 133 4 10 248 29 291 4.81e-55 189
MS.gene87485.t1 MTR_8g105600 40.323 248 126 3 4 231 3 248 1.07e-53 184
MS.gene87485.t1 MTR_1g013170 39.200 250 118 4 7 226 2 247 2.07e-50 174
MS.gene87485.t1 MTR_4g131600 36.032 247 137 4 9 234 19 265 1.50e-48 171
MS.gene87485.t1 MTR_7g117705 36.090 266 142 4 7 244 2 267 1.97e-48 168
MS.gene87485.t1 MTR_8g093040 43.049 223 108 5 10 231 14 218 7.80e-47 159
MS.gene87485.t1 MTR_3g106220 37.652 247 124 3 10 226 8 254 1.35e-46 166
MS.gene87485.t1 MTR_1g013180 36.585 246 130 3 7 226 153 398 2.20e-44 160
MS.gene87485.t1 MTR_1g032570 33.660 306 137 8 68 309 1 304 9.51e-43 155
MS.gene87485.t1 MTR_4g131570 32.800 250 142 4 10 233 17 266 1.01e-42 155
MS.gene87485.t1 MTR_2g450070 34.510 255 132 4 10 229 18 272 2.71e-42 155
MS.gene87485.t1 MTR_4g131580 33.065 248 143 4 9 233 16 263 2.99e-42 154
MS.gene87485.t1 MTR_2g450070 34.510 255 132 4 10 229 18 272 3.23e-42 155
MS.gene87485.t1 MTR_6g016850 43.750 160 86 2 4 161 3 160 2.04e-41 142
MS.gene87485.t1 MTR_3g102590 38.140 215 104 4 10 222 8 195 4.68e-41 143
MS.gene87485.t1 MTR_3g102600 37.156 218 99 3 10 226 8 188 1.50e-39 139
MS.gene87485.t1 MTR_3g102590 37.264 212 104 4 10 219 8 192 1.26e-38 135
MS.gene87485.t1 MTR_3g086100 39.175 194 86 4 68 231 1 192 2.28e-38 142
MS.gene87485.t1 MTR_3g102600 35.681 213 99 3 10 221 8 183 5.32e-37 131
MS.gene87485.t1 MTR_3g102600 36.416 173 73 2 54 226 4 139 4.44e-32 118
MS.gene87485.t1 MTR_0450s0040 29.719 249 154 4 12 248 6 245 4.85e-32 122
MS.gene87485.t1 MTR_7g026400 33.175 211 120 4 52 248 30 233 1.17e-31 124
MS.gene87485.t1 MTR_3g102600 34.524 168 73 2 54 221 4 134 2.27e-29 109
MS.gene87485.t1 MTR_4g121020 33.735 249 131 6 88 308 6 248 1.16e-28 115
MS.gene87485.t1 MTR_8g032710 24.242 363 213 11 6 309 15 374 4.55e-22 96.3
MS.gene87485.t1 MTR_1g013160 34.211 152 67 3 71 193 1 148 5.28e-19 82.8
MS.gene87485.t1 MTR_2g090675 38.298 94 55 2 135 226 125 217 3.82e-14 72.8
MS.gene87485.t1 MTR_5g041350 55.556 54 23 1 170 222 15 68 1.39e-13 70.9
MS.gene87485.t1 MTR_6g032990 44.872 78 42 1 170 246 42 119 4.45e-13 69.7
MS.gene87485.t1 MTR_7g098250 40.594 101 55 3 161 256 253 353 4.67e-13 69.7
MS.gene87485.t1 MTR_4g078810 48.276 58 30 0 169 226 157 214 6.70e-13 69.3
MS.gene87485.t1 MTR_7g088070 40.659 91 51 2 168 257 48 136 7.29e-13 68.2
MS.gene87485.t1 MTR_4g081710 51.852 54 25 1 170 222 17 70 1.81e-12 67.4
MS.gene87485.t1 MTR_2g086450 53.704 54 24 1 170 222 45 98 2.55e-12 67.4
MS.gene87485.t1 MTR_7g088070 51.786 56 26 1 168 222 48 103 2.87e-12 66.2
MS.gene87485.t1 MTR_5g014040 36.250 80 51 0 169 248 310 389 4.07e-12 67.0
MS.gene87485.t1 MTR_7g115530 47.222 72 36 2 170 239 218 289 6.01e-12 65.5
MS.gene87485.t1 MTR_7g115530 40.659 91 51 3 170 258 218 307 7.86e-12 65.5
MS.gene87485.t1 MTR_7g115530 50.000 64 30 2 170 231 218 281 1.38e-11 65.1
MS.gene87485.t1 MTR_2g027860 55.556 54 23 1 170 222 49 102 1.46e-11 64.7
MS.gene87485.t1 MTR_7g115530 40.659 91 51 3 170 258 218 307 1.71e-11 65.1
MS.gene87485.t1 MTR_7g089010 48.276 58 30 0 169 226 90 147 1.84e-11 64.3
MS.gene87485.t1 MTR_4g098870 48.148 54 28 0 169 222 309 362 1.93e-11 65.1
MS.gene87485.t1 MTR_4g098870 48.148 54 28 0 169 222 309 362 2.05e-11 65.1
MS.gene87485.t1 MTR_4g098870 48.148 54 28 0 169 222 329 382 2.15e-11 65.1
MS.gene87485.t1 MTR_4g098870 48.148 54 28 0 169 222 329 382 2.22e-11 64.7
MS.gene87485.t1 MTR_4g098870 48.148 54 28 0 169 222 348 401 2.26e-11 64.7
MS.gene87485.t1 MTR_1g093080 45.122 82 35 3 151 229 199 273 3.01e-11 63.9
MS.gene87485.t1 MTR_1g080330 42.857 84 45 3 161 242 165 247 3.05e-11 63.5
MS.gene87485.t1 MTR_7g093030 42.466 73 40 2 167 238 209 280 3.49e-11 63.2
MS.gene87485.t1 MTR_4g064730 41.250 80 45 2 147 226 110 187 4.05e-11 63.2
MS.gene87485.t1 MTR_1g080330 47.059 68 34 2 166 231 171 238 7.48e-11 62.8
MS.gene87485.t1 MTR_7g093030 47.368 57 29 1 167 222 209 265 8.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87485.t1 AT2G01760 38.403 263 121 5 7 232 4 262 1.25e-55 185
MS.gene87485.t1 AT1G67710 40.075 267 124 8 11 243 8 272 2.20e-53 182
MS.gene87485.t1 AT3G16857 36.039 308 139 9 10 259 33 340 1.08e-50 178
MS.gene87485.t1 AT3G16857 36.039 308 139 9 10 259 33 340 1.43e-50 178
MS.gene87485.t1 AT2G01760 35.052 291 120 7 7 232 4 290 9.87e-50 170
MS.gene87485.t1 AT4G31920 36.481 233 138 2 10 232 13 245 2.86e-46 164
MS.gene87485.t1 AT2G25180 38.750 240 123 6 10 226 13 251 7.94e-44 158
MS.gene87485.t1 AT3G16857 34.944 269 117 9 49 259 2 270 2.26e-39 146
MS.gene87485.t1 AT5G58080 37.008 254 126 7 10 236 14 260 3.58e-39 145
MS.gene87485.t1 AT1G67710 40.191 209 90 7 68 243 1 207 6.93e-36 134
MS.gene87485.t1 AT2G01760 35.821 201 89 4 68 232 1 197 4.29e-35 129
MS.gene87485.t1 AT5G49240 31.356 236 137 5 9 219 37 272 3.23e-33 124
MS.gene87485.t1 AT3G62670 30.258 271 159 9 28 272 53 319 1.15e-31 122
MS.gene87485.t1 AT1G49190 27.734 256 154 6 10 234 30 285 1.84e-28 114
MS.gene87485.t1 AT1G67710 38.624 189 81 7 88 243 12 198 7.95e-27 109
MS.gene87485.t1 AT5G07210 27.778 270 141 7 14 231 16 283 3.38e-25 106
MS.gene87485.t1 AT5G07210 26.978 278 141 8 14 231 16 291 1.20e-22 98.6
MS.gene87485.t1 AT2G27070 25.379 264 140 8 14 222 16 277 1.63e-19 89.4
MS.gene87485.t1 AT1G49190 32.258 124 83 1 10 132 30 153 1.46e-17 83.6
MS.gene87485.t1 AT5G29000 34.483 145 77 6 103 238 166 301 1.05e-15 76.6
MS.gene87485.t1 AT5G29000 33.553 152 83 6 103 245 166 308 1.36e-15 77.4
MS.gene87485.t1 AT5G29000 33.553 152 83 6 103 245 123 265 1.50e-15 77.0
MS.gene87485.t1 AT5G29000 33.553 152 83 6 103 245 123 265 1.50e-15 77.0
MS.gene87485.t1 AT5G44190 48.333 60 31 0 167 226 144 203 1.46e-13 71.2
MS.gene87485.t1 AT5G44190 48.333 60 31 0 167 226 144 203 1.57e-13 70.9
MS.gene87485.t1 AT3G04030 55.556 54 23 1 170 222 45 98 3.89e-13 69.7
MS.gene87485.t1 AT3G04030 55.556 54 23 1 170 222 45 98 4.61e-13 69.7
MS.gene87485.t1 AT4G28610 47.126 87 40 4 170 252 225 309 7.53e-13 68.9
MS.gene87485.t1 AT5G18240 55.556 54 23 1 170 222 45 98 8.24e-13 68.9
MS.gene87485.t1 AT5G18240 55.556 54 23 1 170 222 45 98 8.24e-13 68.9
MS.gene87485.t1 AT5G18240 55.556 54 23 1 170 222 45 98 9.15e-13 68.6
MS.gene87485.t1 AT5G18240 55.556 54 23 1 170 222 45 98 9.21e-13 68.6
MS.gene87485.t1 AT5G18240 55.556 54 23 1 170 222 45 98 9.21e-13 68.6
MS.gene87485.t1 AT2G01060 45.783 83 42 2 159 238 4 86 1.30e-12 67.4
MS.gene87485.t1 AT5G59570 42.105 76 41 1 151 226 125 197 1.74e-12 67.4
MS.gene87485.t1 AT5G59570 42.105 76 41 1 151 226 125 197 1.74e-12 67.4
MS.gene87485.t1 AT3G04450 48.276 58 29 1 166 222 234 291 1.92e-12 67.4
MS.gene87485.t1 AT3G04030 52.830 53 25 0 170 222 45 97 2.59e-12 67.4
MS.gene87485.t1 AT3G46640 43.210 81 43 2 146 226 123 200 3.65e-12 66.6
MS.gene87485.t1 AT3G46640 43.210 81 43 2 146 226 123 200 3.65e-12 66.6
MS.gene87485.t1 AT3G46640 43.210 81 43 2 146 226 123 200 3.78e-12 66.6
MS.gene87485.t1 AT3G04450 48.276 58 29 1 166 222 234 291 4.22e-12 67.0
MS.gene87485.t1 AT3G04450 48.276 58 29 1 166 222 194 251 4.70e-12 66.6
MS.gene87485.t1 AT3G04450 48.276 58 29 1 166 222 194 251 4.70e-12 66.6
MS.gene87485.t1 AT5G05090 42.697 89 39 3 138 226 61 137 6.66e-12 65.1
MS.gene87485.t1 AT2G20570 46.552 58 31 0 169 226 152 209 7.51e-12 66.2
MS.gene87485.t1 AT1G69580 51.852 54 25 1 170 222 34 87 7.69e-12 65.5
MS.gene87485.t1 AT1G69580 51.852 54 25 1 170 222 34 87 7.88e-12 65.5
MS.gene87485.t1 AT2G40970 46.552 58 31 0 169 226 104 161 1.18e-11 64.3
MS.gene87485.t1 AT3G10760 48.276 58 30 0 169 226 104 161 1.41e-11 64.7
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.02e-11 65.1
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.34e-11 64.7
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.34e-11 64.7
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.34e-11 64.7
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.34e-11 64.7
MS.gene87485.t1 AT4G18020 36.842 76 45 1 152 227 281 353 2.34e-11 64.7
MS.gene87485.t1 AT2G20570 47.273 55 29 0 172 226 171 225 5.25e-11 63.5
MS.gene87485.t1 AT3G24120 48.529 68 31 2 170 233 41 108 6.11e-11 62.8
MS.gene87485.t1 AT3G24120 48.529 68 31 2 170 233 41 108 6.18e-11 62.8

Find 58 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTGTCGCAGAATTC+AGG 0.268438 4.1:-76186584 None:intergenic
ACATATTGCCAGCCATTTAC+AGG 0.282271 4.1:+76186078 MS.gene87485:CDS
TTCAGTTACCAAATGTAGTA+TGG 0.293347 4.1:+76185353 MS.gene87485:intron
CAACGACATTGGGTGGAAAT+TGG 0.345706 4.1:+76186624 MS.gene87485:CDS
TGAGTTGTAGGGTAACATTT+TGG 0.376494 4.1:-76185470 None:intergenic
GATAAATCATCATTAACATA+TGG 0.380393 4.1:-76186696 None:intergenic
AATGTGGGGCTTGCGAATAT+TGG 0.385194 4.1:+76185666 MS.gene87485:CDS
CGAATATTGGACTAAGCCTT+TGG 0.392176 4.1:+76185679 MS.gene87485:CDS
TGACAGGAATGTTGAGTTGT+AGG 0.408636 4.1:-76185482 None:intergenic
ATCAGAAGCCATACTACATT+TGG 0.409595 4.1:-76185361 None:intergenic
AATAAAGAATATGAAATTGT+TGG 0.416766 4.1:+76185764 MS.gene87485:CDS
CTTTCTTTCCAACATGTTGA+AGG 0.419409 4.1:-76185385 None:intergenic
CAAAGAAGGCCCGTTTGTCT+TGG 0.435563 4.1:+76185855 MS.gene87485:CDS
AAAAGAAACACTTGCAAAGA+AGG 0.435703 4.1:+76185841 MS.gene87485:CDS
GGTTCAAGAAAATAGAAAAC+GGG 0.441425 4.1:+76185796 MS.gene87485:CDS
TTGCGATGCACAACGACATT+GGG 0.452490 4.1:+76186614 MS.gene87485:CDS
TTGAGACCGGCTGGGAATGA+TGG 0.453544 4.1:-76185156 None:intergenic
CTTCAACATGTTGGAAAGAA+AGG 0.459586 4.1:+76185386 MS.gene87485:CDS
AATAAATTCTTACTAATGAC+AGG 0.461511 4.1:-76185498 None:intergenic
ACATCTCCTCAATAGAGTTA+AGG 0.467190 4.1:-76185209 None:intergenic
TTCTCGTGACCAAGACAAAC+GGG 0.467708 4.1:-76185864 None:intergenic
TTAACATATGGGAACAAGTT+GGG 0.470604 4.1:-76186684 None:intergenic
TACTCACTCAATGCCGGAGC+AGG 0.473606 4.1:+76186548 MS.gene87485:CDS
GCAATAACCTTGAGACCGGC+TGG 0.475576 4.1:-76185165 None:intergenic
AAAAGTGTTGCTCATAATGT+TGG 0.490442 4.1:-76186652 None:intergenic
AAGTCATAAACATCCATGTC+TGG 0.491105 4.1:-76185444 None:intergenic
TGGTTCAAGAAAATAGAAAA+CGG 0.501089 4.1:+76185795 MS.gene87485:CDS
AGGAAAGAATCATACTATCA+AGG 0.510494 4.1:-76185925 None:intergenic
ATATGAAATTGTTGGAAGCT+CGG 0.515274 4.1:+76185772 MS.gene87485:CDS
ATTGCGATGCACAACGACAT+TGG 0.516098 4.1:+76186613 MS.gene87485:CDS
TGTAATCGATATCATTATCA+AGG 0.517908 4.1:+76185231 MS.gene87485:CDS
GACAGGAATGTTGAGTTGTA+GGG 0.519779 4.1:-76185481 None:intergenic
ATCATGAAGTCTATTGAATG+TGG 0.526495 4.1:+76185650 MS.gene87485:CDS
ATTCTCGTGACCAAGACAAA+CGG 0.526657 4.1:-76185865 None:intergenic
ATAAATCATCATTAACATAT+GGG 0.527171 4.1:-76186695 None:intergenic
AAAATGAACCTGTAAATGGC+TGG 0.527802 4.1:-76186086 None:intergenic
TTCTGATGCCTTCAACATGT+TGG 0.527887 4.1:+76185377 MS.gene87485:CDS
CATGTTGCAAGAATTAGAAA+CGG 0.528421 4.1:+76185731 MS.gene87485:CDS
ATTAACATATGGGAACAAGT+TGG 0.538808 4.1:-76186685 None:intergenic
CACTCTCCTTAACTCTATTG+AGG 0.546467 4.1:+76185203 MS.gene87485:CDS
CTACGTGCAGTCAATCAACT+AGG 0.547867 4.1:+76185902 MS.gene87485:CDS
AGCTCAACAGAAGAGACAAA+AGG 0.548661 4.1:+76186471 MS.gene87485:CDS
AGAAAACTCTGGTCCTGCTC+CGG 0.548712 4.1:-76186561 None:intergenic
TCATGAAGTCTATTGAATGT+GGG 0.549366 4.1:+76185651 MS.gene87485:CDS
ATCATTCCCAGCCGGTCTCA+AGG 0.552068 4.1:+76185158 MS.gene87485:CDS
TGAGACCGGCTGGGAATGAT+GGG 0.577892 4.1:-76185155 None:intergenic
CGATGCACAACGACATTGGG+TGG 0.580466 4.1:+76186617 MS.gene87485:CDS
AATTGCAATAACCTTGAGAC+CGG 0.581075 4.1:-76185169 None:intergenic
AGAAGCTACTCACTCAATGC+CGG 0.591913 4.1:+76186542 MS.gene87485:CDS
CACAACCCATCATTCCCAGC+CGG 0.593734 4.1:+76185150 MS.gene87485:CDS
CAGAATTCAGGAGAAAACTC+TGG 0.602905 4.1:-76186572 None:intergenic
CATGAAGTCTATTGAATGTG+GGG 0.606058 4.1:+76185652 MS.gene87485:CDS
CAATAACCTTGAGACCGGCT+GGG 0.613963 4.1:-76185164 None:intergenic
CAACAGAAGAGACAAAAGGT+AGG 0.617016 4.1:+76186475 MS.gene87485:CDS
TGATGCTCATATGCCAGACA+TGG 0.629107 4.1:+76185431 MS.gene87485:CDS
ATGATTTATCATCACTTGTG+TGG 0.642369 4.1:+76186709 MS.gene87485:CDS
TGAAATTGTTGGAAGCTCGG+TGG 0.670504 4.1:+76185775 MS.gene87485:CDS
GTTCAAGAAAATAGAAAACG+GGG 0.742093 4.1:+76185797 MS.gene87485:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAATATGAAATTGT+TGG + chr4.1:76185764-76185783 MS.gene87485:CDS 15.0%
!! ATAAATCATCATTAACATAT+GGG - chr4.1:76186698-76186717 None:intergenic 15.0%
!!! AATATGTTCTTTTTTCATAT+CGG - chr4.1:76186065-76186084 None:intergenic 15.0%
!! AAAAGATGAAAACTTGAATA+AGG - chr4.1:76185274-76185293 None:intergenic 20.0%
!! AATAAATTCTTACTAATGAC+AGG - chr4.1:76185501-76185520 None:intergenic 20.0%
!! AGCATAGTAAAAAAGTAATT+AGG - chr4.1:76185948-76185967 None:intergenic 20.0%
!! GATAAATCATCATTAACATA+TGG - chr4.1:76186699-76186718 None:intergenic 20.0%
!!! AAAAAAGATTCTGAAAATCA+TGG + chr4.1:76186033-76186052 MS.gene87485:CDS 20.0%
!!! ATATGTTCTTTTTTCATATC+GGG - chr4.1:76186064-76186083 None:intergenic 20.0%
!!! ATATTTCTTTTTTGTAGTGA+TGG + chr4.1:76185604-76185623 MS.gene87485:intron 20.0%
!!! ATGATTTTCAGAATCTTTTT+TGG - chr4.1:76186034-76186053 None:intergenic 20.0%
!!! ATGTTTTTCTCTTAATTTTC+AGG + chr4.1:76186001-76186020 MS.gene87485:intron 20.0%
!!! ATTCAAGTTTTCATCTTTTT+TGG + chr4.1:76185275-76185294 MS.gene87485:intron 20.0%
!!! TGATTTTAAACTGAAATTTG+TGG + chr4.1:76186386-76186405 MS.gene87485:intron 20.0%
!!! TGTTTTTCTCTTAATTTTCA+GGG + chr4.1:76186002-76186021 MS.gene87485:intron 20.0%
!!! TTTTGCAGAAATATAGAAAT+CGG + chr4.1:76186442-76186461 MS.gene87485:intron 20.0%
! AGTAGTATATTATCAACAAG+AGG - chr4.1:76186355-76186374 None:intergenic 25.0%
! TACAAAAATGAACCTGTAAA+TGG - chr4.1:76186093-76186112 None:intergenic 25.0%
! TGGTTCAAGAAAATAGAAAA+CGG + chr4.1:76185795-76185814 MS.gene87485:CDS 25.0%
! TGTAATCGATATCATTATCA+AGG + chr4.1:76185231-76185250 MS.gene87485:CDS 25.0%
! TTGAATAACATGAAAGACTA+AGG - chr4.1:76186231-76186250 None:intergenic 25.0%
!! GTTTTTCTCTTAATTTTCAG+GGG + chr4.1:76186003-76186022 MS.gene87485:intron 25.0%
!!! AAGTCAAATTTTGTTTCAAG+AGG - chr4.1:76186522-76186541 None:intergenic 25.0%
AAAAGAAACACTTGCAAAGA+AGG + chr4.1:76185841-76185860 MS.gene87485:CDS 30.0%
AAAAGATAACTGACAAACCT+AGG - chr4.1:76186169-76186188 None:intergenic 30.0%
AGGAAAGAATCATACTATCA+AGG - chr4.1:76185928-76185947 None:intergenic 30.0%
ATATGAAATTGTTGGAAGCT+CGG + chr4.1:76185772-76185791 MS.gene87485:CDS 30.0%
ATCATGAAGTCTATTGAATG+TGG + chr4.1:76185650-76185669 MS.gene87485:CDS 30.0%
ATGATTTATCATCACTTGTG+TGG + chr4.1:76186709-76186728 MS.gene87485:CDS 30.0%
ATTAACATATGGGAACAAGT+TGG - chr4.1:76186688-76186707 None:intergenic 30.0%
CATGTTGCAAGAATTAGAAA+CGG + chr4.1:76185731-76185750 MS.gene87485:CDS 30.0%
GGTTCAAGAAAATAGAAAAC+GGG + chr4.1:76185796-76185815 MS.gene87485:CDS 30.0%
GTTCAAGAAAATAGAAAACG+GGG + chr4.1:76185797-76185816 MS.gene87485:CDS 30.0%
TCATGAAGTCTATTGAATGT+GGG + chr4.1:76185651-76185670 MS.gene87485:CDS 30.0%
TGATTTACAACAACAGACTT+AGG - chr4.1:76186193-76186212 None:intergenic 30.0%
TTAACATATGGGAACAAGTT+GGG - chr4.1:76186687-76186706 None:intergenic 30.0%
TTCAGTTACCAAATGTAGTA+TGG + chr4.1:76185353-76185372 MS.gene87485:intron 30.0%
! CTTCATGATAGAACTTTTTG+TGG - chr4.1:76185639-76185658 None:intergenic 30.0%
!! AAAAGTGTTGCTCATAATGT+TGG - chr4.1:76186655-76186674 None:intergenic 30.0%
AAAAAGAGGTCAAGATCATG+TGG + chr4.1:76185705-76185724 MS.gene87485:CDS 35.0%
AAAATGAACCTGTAAATGGC+TGG - chr4.1:76186089-76186108 None:intergenic 35.0%
AAGTCATAAACATCCATGTC+TGG - chr4.1:76185447-76185466 None:intergenic 35.0%
AATTGCAATAACCTTGAGAC+CGG - chr4.1:76185172-76185191 None:intergenic 35.0%
ACATCTCCTCAATAGAGTTA+AGG - chr4.1:76185212-76185231 None:intergenic 35.0%
AGAGGATGTATAGAAGCTAA+TGG - chr4.1:76186337-76186356 None:intergenic 35.0%
AGTAGTGAATTATGCAGTCA+TGG + chr4.1:76186267-76186286 MS.gene87485:intron 35.0%
ATCAGAAGCCATACTACATT+TGG - chr4.1:76185364-76185383 None:intergenic 35.0%
CATGAAGTCTATTGAATGTG+GGG + chr4.1:76185652-76185671 MS.gene87485:CDS 35.0%
CTTCAACATGTTGGAAAGAA+AGG + chr4.1:76185386-76185405 MS.gene87485:CDS 35.0%
CTTTCTTTCCAACATGTTGA+AGG - chr4.1:76185388-76185407 None:intergenic 35.0%
TAAGCCTTTGGTTGAAAAAG+AGG + chr4.1:76185691-76185710 MS.gene87485:CDS 35.0%
! CTTTGCAAGTGTTTCTTTTG+AGG - chr4.1:76185840-76185859 None:intergenic 35.0%
! TGAGTTGTAGGGTAACATTT+TGG - chr4.1:76185473-76185492 None:intergenic 35.0%
!!! TTGACCTCTTTTTCAACCAA+AGG - chr4.1:76185698-76185717 None:intergenic 35.0%
ACATATTGCCAGCCATTTAC+AGG + chr4.1:76186078-76186097 MS.gene87485:CDS 40.0%
ACCTAAGTCTATAGTTGCCT+AGG + chr4.1:76186149-76186168 MS.gene87485:intron 40.0%
ACCTAGGCAACTATAGACTT+AGG - chr4.1:76186153-76186172 None:intergenic 40.0%
AGCTCAACAGAAGAGACAAA+AGG + chr4.1:76186471-76186490 MS.gene87485:CDS 40.0%
ATTCTCGTGACCAAGACAAA+CGG - chr4.1:76185868-76185887 None:intergenic 40.0%
CAACAGAAGAGACAAAAGGT+AGG + chr4.1:76186475-76186494 MS.gene87485:CDS 40.0%
CACTCTCCTTAACTCTATTG+AGG + chr4.1:76185203-76185222 MS.gene87485:CDS 40.0%
CAGAATTCAGGAGAAAACTC+TGG - chr4.1:76186575-76186594 None:intergenic 40.0%
CGAATATTGGACTAAGCCTT+TGG + chr4.1:76185679-76185698 MS.gene87485:CDS 40.0%
TTCTGATGCCTTCAACATGT+TGG + chr4.1:76185377-76185396 MS.gene87485:CDS 40.0%
! GACAGGAATGTTGAGTTGTA+GGG - chr4.1:76185484-76185503 None:intergenic 40.0%
! TGACAGGAATGTTGAGTTGT+AGG - chr4.1:76185485-76185504 None:intergenic 40.0%
AATGTGGGGCTTGCGAATAT+TGG + chr4.1:76185666-76185685 MS.gene87485:CDS 45.0%
AGAAGCTACTCACTCAATGC+CGG + chr4.1:76186542-76186561 MS.gene87485:CDS 45.0%
ATTGCGATGCACAACGACAT+TGG + chr4.1:76186613-76186632 MS.gene87485:CDS 45.0%
CAACGACATTGGGTGGAAAT+TGG + chr4.1:76186624-76186643 MS.gene87485:CDS 45.0%
CTACGTGCAGTCAATCAACT+AGG + chr4.1:76185902-76185921 MS.gene87485:CDS 45.0%
GACATTGTGTCGCAGAATTC+AGG - chr4.1:76186587-76186606 None:intergenic 45.0%
TGAAATTGTTGGAAGCTCGG+TGG + chr4.1:76185775-76185794 MS.gene87485:CDS 45.0%
TGATGCTCATATGCCAGACA+TGG + chr4.1:76185431-76185450 MS.gene87485:CDS 45.0%
TTCTCGTGACCAAGACAAAC+GGG - chr4.1:76185867-76185886 None:intergenic 45.0%
TTGCGATGCACAACGACATT+GGG + chr4.1:76186614-76186633 MS.gene87485:CDS 45.0%
AGAAAACTCTGGTCCTGCTC+CGG - chr4.1:76186564-76186583 None:intergenic 50.0%
CAAAGAAGGCCCGTTTGTCT+TGG + chr4.1:76185855-76185874 MS.gene87485:CDS 50.0%
CAATAACCTTGAGACCGGCT+GGG - chr4.1:76185167-76185186 None:intergenic 50.0%
ATCATTCCCAGCCGGTCTCA+AGG + chr4.1:76185158-76185177 MS.gene87485:CDS 55.0%
CACAACCCATCATTCCCAGC+CGG + chr4.1:76185150-76185169 MS.gene87485:CDS 55.0%
CGATGCACAACGACATTGGG+TGG + chr4.1:76186617-76186636 MS.gene87485:CDS 55.0%
GCAATAACCTTGAGACCGGC+TGG - chr4.1:76185168-76185187 None:intergenic 55.0%
TACTCACTCAATGCCGGAGC+AGG + chr4.1:76186548-76186567 MS.gene87485:CDS 55.0%
TGAGACCGGCTGGGAATGAT+GGG - chr4.1:76185158-76185177 None:intergenic 55.0%
TTGAGACCGGCTGGGAATGA+TGG - chr4.1:76185159-76185178 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 76185135 76186734 76185135 ID=MS.gene87485
chr4.1 mRNA 76185135 76186734 76185135 ID=MS.gene87485.t1;Parent=MS.gene87485
chr4.1 exon 76185135 76185252 76185135 ID=MS.gene87485.t1.exon1;Parent=MS.gene87485.t1
chr4.1 CDS 76185135 76185252 76185135 ID=cds.MS.gene87485.t1;Parent=MS.gene87485.t1
chr4.1 exon 76185358 76185507 76185358 ID=MS.gene87485.t1.exon2;Parent=MS.gene87485.t1
chr4.1 CDS 76185358 76185507 76185358 ID=cds.MS.gene87485.t1;Parent=MS.gene87485.t1
chr4.1 exon 76185621 76185932 76185621 ID=MS.gene87485.t1.exon3;Parent=MS.gene87485.t1
chr4.1 CDS 76185621 76185932 76185621 ID=cds.MS.gene87485.t1;Parent=MS.gene87485.t1
chr4.1 exon 76186023 76186099 76186023 ID=MS.gene87485.t1.exon4;Parent=MS.gene87485.t1
chr4.1 CDS 76186023 76186099 76186023 ID=cds.MS.gene87485.t1;Parent=MS.gene87485.t1
chr4.1 exon 76186450 76186734 76186450 ID=MS.gene87485.t1.exon5;Parent=MS.gene87485.t1
chr4.1 CDS 76186450 76186734 76186450 ID=cds.MS.gene87485.t1;Parent=MS.gene87485.t1
Gene Sequence

>MS.gene87485

ATGGCAGTTTTTGCTCACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTCTCCTTAACTCTATTGAGGAGATGTGTAATCGATATCATTATCAAGGTTAGTTACTGAATCATACCTTATTCAAGTTTTCATCTTTTTTGGTAAAAAATTCTTACTTTTATATGTATTCATGTTTGTTTATTCTGATATTGTTTATTTCAGTTACCAAATGTAGTATGGCTTCTGATGCCTTCAACATGTTGGAAAGAAAGGACTGTTTTGATGTAATGTTGATTGATGCTCATATGCCAGACATGGATGTTTATGACTTTGTCCAAAATGTTACCCTACAACTCAACATTCCTGTCATTAGTAAGAATTTATTCAACTTTTTCATTAAAATTCATTAGTTACACATGTCACATAATTTATTCATATATATGTACTTAAGAAGTGTGAATTGACATTATATTTCTTTTTTGTAGTGATGGCTGTTGATTCCACAAAAAGTTCTATCATGAAGTCTATTGAATGTGGGGCTTGCGAATATTGGACTAAGCCTTTGGTTGAAAAAGAGGTCAAGATCATGTGGCAACATGTTGCAAGAATTAGAAACGGTTTGATTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAGAAAATAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACTTGCAAAGAAGGCCCGTTTGTCTTGGTCACGAGAATTGCATCAGCAGTTTCTACGTGCAGTCAATCAACTAGGCCTTGATAGTATGATTCTTTCCTAATTACTTTTTTACTATGCTTTGTTGCATTCTTCAACAGTTGAACTTATGTGCATGTTTTTCTCTTAATTTTCAGGGGCAACGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCGATATGAAAAAAGAACATATTGCCAGCCATTTACAGGTTCATTTTTGTATTAATTTTTGTTGATTCTGTAAATTTGATATATTTTACCTAAGTCTATAGTTGCCTAGGTTTGTCAGTTATCTTTTACCTAAGTCTGTTGTTGTAAATCATTTATGTTGTTTATACCTTAGTCTTTCATGTTATTCAAACTATTGAAGTTGTAAAGTAGTGAATTATGCAGTCATGGCAGATCTTGAAGTCTGAGTTTTAGAATAGAATATAAGTATTTCTCCATTAGCTTCTATACATCCTCTTGTTGATAATATACTACTTGTCTTTTGTGTGATTTTAAACTGAAATTTGTGGAGTATTATTATTAACATTGTAACTGCAATGTTGTTTTGCAGAAATATAGAAATCGGTTAAAGAGCTCAACAGAAGAGACAAAAGGTAGGATGAAAAAATCAAAGACGAGTCCTCTTGAAACAAAATTTGACTTAGAAGCTACTCACTCAATGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCTGCGACACAATGTCGCGACAATTGCGATGCACAACGACATTGGGTGGAAATTGGTGAATCCAACATTATGAGCAACACTTTTTCAGACTTGCCCAACTTGTTCCCATATGTTAATGATGATTTATCATCACTTGTGTGGTGA
Protein sequence

>MS.gene87485.t1

MAVFAHNPSFPAGLKVIAIDHDITLLNSIEEMCNRYHYQVTKCSMASDAFNMLERKDCFDVMLIDAHMPDMDVYDFVQNVTLQLNIPVIMMAVDSTKSSIMKSIECGACEYWTKPLVEKEVKIMWQHVARIRNGLIENKEYEIVGSSVVQENRKRGREDANASKETLAKKARLSWSRELHQQFLRAVNQLGLDRATPKKILKIMDVPDMKKEHIASHLQKYRNRLKSSTEETKGRMKKSKTSPLETKFDLEATHSMPEQDQSFLLNSATQCRDNCDAQRHWVEIGESNIMSNTFSDLPNLFPYVNDDLSSLVW