Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87486.t1 | XP_013455021.1 | 88.6 | 219 | 23 | 1 | 1 | 219 | 1 | 217 | 6.60E-102 | 380.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87486.t1 | Q8L9Y3 | 39.2 | 250 | 111 | 6 | 7 | 219 | 4 | 249 | 1.2e-40 | 167.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87486.t1 | A0A072UH32 | 88.6 | 219 | 23 | 1 | 1 | 219 | 1 | 217 | 4.7e-102 | 380.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene87486.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87486.t1 | MTR_4g021845 | 88.584 | 219 | 23 | 1 | 1 | 219 | 1 | 217 | 8.56e-143 | 397 |
MS.gene87486.t1 | MTR_4g021855 | 84.018 | 219 | 33 | 1 | 1 | 219 | 1 | 217 | 1.03e-133 | 378 |
MS.gene87486.t1 | MTR_4g021760 | 82.727 | 220 | 35 | 2 | 1 | 219 | 1 | 218 | 1.15e-131 | 373 |
MS.gene87486.t1 | MTR_4g021790 | 82.192 | 219 | 37 | 1 | 1 | 219 | 1 | 217 | 1.01e-129 | 367 |
MS.gene87486.t1 | MTR_5g055260 | 60.274 | 219 | 58 | 5 | 1 | 219 | 1 | 190 | 2.41e-81 | 243 |
MS.gene87486.t1 | MTR_4g023980 | 79.137 | 139 | 27 | 1 | 55 | 193 | 35 | 171 | 4.53e-78 | 232 |
MS.gene87486.t1 | MTR_1g032570 | 44.813 | 241 | 100 | 5 | 10 | 219 | 11 | 249 | 8.16e-64 | 209 |
MS.gene87486.t1 | MTR_3g086100 | 40.336 | 238 | 112 | 4 | 10 | 219 | 13 | 248 | 4.92e-54 | 182 |
MS.gene87486.t1 | MTR_8g079940 | 40.506 | 237 | 113 | 4 | 9 | 219 | 24 | 258 | 8.79e-54 | 180 |
MS.gene87486.t1 | MTR_6g045327 | 46.698 | 212 | 107 | 4 | 10 | 219 | 14 | 221 | 1.02e-53 | 177 |
MS.gene87486.t1 | MTR_4g121020 | 40.678 | 236 | 112 | 3 | 10 | 219 | 31 | 264 | 1.93e-53 | 182 |
MS.gene87486.t1 | MTR_4g121020 | 40.678 | 236 | 112 | 3 | 10 | 219 | 31 | 264 | 2.25e-53 | 182 |
MS.gene87486.t1 | MTR_2g034960 | 41.026 | 234 | 112 | 3 | 10 | 219 | 29 | 260 | 2.21e-52 | 178 |
MS.gene87486.t1 | MTR_8g105600 | 40.678 | 236 | 118 | 3 | 4 | 219 | 3 | 236 | 4.07e-51 | 174 |
MS.gene87486.t1 | MTR_1g013170 | 38.912 | 239 | 120 | 4 | 7 | 219 | 2 | 240 | 1.77e-48 | 166 |
MS.gene87486.t1 | MTR_4g131600 | 37.768 | 233 | 122 | 4 | 9 | 219 | 19 | 250 | 1.02e-46 | 162 |
MS.gene87486.t1 | MTR_7g117705 | 36.402 | 239 | 126 | 3 | 7 | 219 | 2 | 240 | 1.27e-45 | 157 |
MS.gene87486.t1 | MTR_3g106220 | 36.250 | 240 | 123 | 3 | 10 | 219 | 8 | 247 | 2.52e-44 | 157 |
MS.gene87486.t1 | MTR_1g013180 | 37.238 | 239 | 124 | 4 | 7 | 219 | 153 | 391 | 2.37e-43 | 154 |
MS.gene87486.t1 | MTR_2g450070 | 34.286 | 245 | 126 | 4 | 10 | 219 | 18 | 262 | 6.66e-42 | 150 |
MS.gene87486.t1 | MTR_8g093040 | 41.518 | 224 | 108 | 7 | 1 | 219 | 1 | 206 | 7.94e-42 | 143 |
MS.gene87486.t1 | MTR_6g016850 | 43.750 | 160 | 86 | 2 | 4 | 161 | 3 | 160 | 8.45e-42 | 140 |
MS.gene87486.t1 | MTR_2g450070 | 34.286 | 245 | 126 | 4 | 10 | 219 | 18 | 262 | 1.00e-41 | 150 |
MS.gene87486.t1 | MTR_4g131570 | 34.177 | 237 | 128 | 4 | 10 | 219 | 17 | 252 | 3.49e-41 | 147 |
MS.gene87486.t1 | MTR_4g131580 | 34.468 | 235 | 129 | 4 | 9 | 219 | 16 | 249 | 4.09e-40 | 145 |
MS.gene87486.t1 | MTR_3g102590 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 6.08e-40 | 135 |
MS.gene87486.t1 | MTR_3g102590 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 1.34e-39 | 136 |
MS.gene87486.t1 | MTR_1g032570 | 40.659 | 182 | 76 | 4 | 68 | 219 | 1 | 180 | 7.09e-39 | 140 |
MS.gene87486.t1 | MTR_3g102600 | 35.484 | 217 | 100 | 4 | 4 | 219 | 4 | 181 | 6.61e-38 | 130 |
MS.gene87486.t1 | MTR_3g102600 | 35.484 | 217 | 100 | 4 | 4 | 219 | 4 | 181 | 1.20e-37 | 131 |
MS.gene87486.t1 | MTR_3g086100 | 38.547 | 179 | 81 | 3 | 68 | 219 | 1 | 177 | 7.30e-36 | 132 |
MS.gene87486.t1 | MTR_7g026400 | 36.702 | 188 | 106 | 4 | 45 | 219 | 19 | 206 | 9.69e-32 | 121 |
MS.gene87486.t1 | MTR_0450s0040 | 31.019 | 216 | 138 | 3 | 12 | 219 | 6 | 218 | 5.02e-31 | 116 |
MS.gene87486.t1 | MTR_3g102600 | 35.119 | 168 | 72 | 2 | 52 | 219 | 2 | 132 | 1.71e-30 | 110 |
MS.gene87486.t1 | MTR_3g102600 | 35.119 | 168 | 72 | 2 | 52 | 219 | 2 | 132 | 1.73e-30 | 111 |
MS.gene87486.t1 | MTR_4g121020 | 37.580 | 157 | 71 | 2 | 88 | 219 | 6 | 160 | 1.03e-25 | 104 |
MS.gene87486.t1 | MTR_1g013160 | 33.784 | 148 | 73 | 3 | 71 | 193 | 1 | 148 | 2.04e-19 | 81.6 |
MS.gene87486.t1 | MTR_8g032710 | 26.295 | 251 | 141 | 9 | 12 | 219 | 19 | 268 | 4.97e-18 | 82.4 |
MS.gene87486.t1 | MTR_5g041350 | 56.863 | 51 | 21 | 1 | 170 | 219 | 15 | 65 | 1.19e-13 | 69.3 |
MS.gene87486.t1 | MTR_2g090675 | 41.667 | 84 | 47 | 2 | 138 | 219 | 127 | 210 | 2.12e-13 | 68.6 |
MS.gene87486.t1 | MTR_6g032990 | 56.863 | 51 | 21 | 1 | 170 | 219 | 42 | 92 | 5.88e-13 | 67.4 |
MS.gene87486.t1 | MTR_4g078810 | 49.020 | 51 | 26 | 0 | 169 | 219 | 157 | 207 | 7.12e-12 | 64.3 |
MS.gene87486.t1 | MTR_4g098870 | 50.980 | 51 | 25 | 0 | 169 | 219 | 309 | 359 | 4.62e-11 | 62.0 |
MS.gene87486.t1 | MTR_4g098870 | 50.980 | 51 | 25 | 0 | 169 | 219 | 329 | 379 | 4.85e-11 | 62.0 |
MS.gene87486.t1 | MTR_4g098870 | 50.980 | 51 | 25 | 0 | 169 | 219 | 309 | 359 | 5.72e-11 | 61.6 |
MS.gene87486.t1 | MTR_4g098870 | 50.980 | 51 | 25 | 0 | 169 | 219 | 329 | 379 | 5.95e-11 | 61.6 |
MS.gene87486.t1 | MTR_4g098870 | 50.980 | 51 | 25 | 0 | 169 | 219 | 348 | 398 | 5.96e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87486.t1 | AT2G01760 | 39.200 | 250 | 111 | 6 | 7 | 219 | 4 | 249 | 2.98e-55 | 181 |
MS.gene87486.t1 | AT1G67710 | 40.678 | 236 | 113 | 5 | 11 | 219 | 8 | 243 | 6.18e-50 | 170 |
MS.gene87486.t1 | AT2G01760 | 35.252 | 278 | 111 | 7 | 7 | 219 | 4 | 277 | 2.25e-49 | 166 |
MS.gene87486.t1 | AT3G16857 | 37.008 | 254 | 116 | 4 | 10 | 219 | 33 | 286 | 1.55e-47 | 166 |
MS.gene87486.t1 | AT3G16857 | 37.008 | 254 | 116 | 4 | 10 | 219 | 33 | 286 | 1.92e-47 | 166 |
MS.gene87486.t1 | AT4G31920 | 38.636 | 220 | 125 | 2 | 10 | 219 | 13 | 232 | 6.97e-46 | 160 |
MS.gene87486.t1 | AT2G25180 | 38.136 | 236 | 116 | 4 | 10 | 219 | 13 | 244 | 3.02e-44 | 156 |
MS.gene87486.t1 | AT5G58080 | 38.197 | 233 | 118 | 6 | 10 | 219 | 14 | 243 | 2.37e-37 | 137 |
MS.gene87486.t1 | AT3G16857 | 37.209 | 215 | 91 | 6 | 49 | 219 | 2 | 216 | 2.15e-36 | 134 |
MS.gene87486.t1 | AT5G49240 | 32.231 | 242 | 137 | 6 | 3 | 219 | 33 | 272 | 9.17e-36 | 128 |
MS.gene87486.t1 | AT2G01760 | 36.702 | 188 | 79 | 5 | 68 | 219 | 1 | 184 | 1.23e-34 | 125 |
MS.gene87486.t1 | AT1G67710 | 39.888 | 178 | 81 | 4 | 68 | 219 | 1 | 178 | 2.62e-32 | 122 |
MS.gene87486.t1 | AT1G49190 | 29.289 | 239 | 140 | 5 | 10 | 219 | 30 | 268 | 8.48e-30 | 114 |
MS.gene87486.t1 | AT3G62670 | 30.516 | 213 | 127 | 5 | 28 | 219 | 53 | 265 | 8.17e-29 | 112 |
MS.gene87486.t1 | AT1G67710 | 38.608 | 158 | 71 | 4 | 88 | 219 | 12 | 169 | 9.61e-24 | 98.6 |
MS.gene87486.t1 | AT5G07210 | 26.357 | 258 | 136 | 6 | 14 | 219 | 16 | 271 | 1.78e-23 | 98.2 |
MS.gene87486.t1 | AT5G07210 | 25.564 | 266 | 136 | 7 | 14 | 219 | 16 | 279 | 5.93e-21 | 90.9 |
MS.gene87486.t1 | AT1G49190 | 33.871 | 124 | 81 | 1 | 10 | 132 | 30 | 153 | 1.25e-19 | 87.0 |
MS.gene87486.t1 | AT2G27070 | 24.138 | 261 | 141 | 7 | 14 | 219 | 16 | 274 | 2.56e-17 | 80.5 |
MS.gene87486.t1 | AT1G68210 | 24.535 | 269 | 142 | 8 | 8 | 219 | 7 | 271 | 2.80e-16 | 77.4 |
MS.gene87486.t1 | AT5G29000 | 35.200 | 125 | 64 | 5 | 103 | 219 | 166 | 281 | 1.30e-13 | 68.9 |
MS.gene87486.t1 | AT5G29000 | 35.200 | 125 | 64 | 5 | 103 | 219 | 166 | 281 | 2.89e-13 | 68.6 |
MS.gene87486.t1 | AT5G29000 | 35.200 | 125 | 64 | 5 | 103 | 219 | 123 | 238 | 3.02e-13 | 68.2 |
MS.gene87486.t1 | AT5G29000 | 35.200 | 125 | 64 | 5 | 103 | 219 | 123 | 238 | 3.02e-13 | 68.2 |
MS.gene87486.t1 | AT3G04030 | 56.863 | 51 | 21 | 1 | 170 | 219 | 45 | 95 | 5.23e-13 | 67.4 |
MS.gene87486.t1 | AT3G04030 | 56.863 | 51 | 21 | 1 | 170 | 219 | 45 | 95 | 5.78e-13 | 67.4 |
MS.gene87486.t1 | AT5G18240 | 50.000 | 68 | 32 | 2 | 153 | 219 | 29 | 95 | 1.08e-12 | 66.6 |
MS.gene87486.t1 | AT5G18240 | 50.000 | 68 | 32 | 2 | 153 | 219 | 29 | 95 | 1.08e-12 | 66.6 |
MS.gene87486.t1 | AT5G18240 | 50.000 | 68 | 32 | 2 | 153 | 219 | 29 | 95 | 1.19e-12 | 66.6 |
MS.gene87486.t1 | AT5G18240 | 50.000 | 68 | 32 | 2 | 153 | 219 | 29 | 95 | 1.19e-12 | 66.6 |
MS.gene87486.t1 | AT5G18240 | 50.000 | 68 | 32 | 2 | 153 | 219 | 29 | 95 | 1.21e-12 | 66.6 |
MS.gene87486.t1 | AT5G44190 | 52.941 | 51 | 24 | 0 | 169 | 219 | 146 | 196 | 3.43e-12 | 65.1 |
MS.gene87486.t1 | AT2G01060 | 51.613 | 62 | 29 | 1 | 159 | 219 | 4 | 65 | 3.50e-12 | 64.7 |
MS.gene87486.t1 | AT3G04030 | 54.000 | 50 | 23 | 0 | 170 | 219 | 45 | 94 | 3.55e-12 | 65.1 |
MS.gene87486.t1 | AT5G44190 | 52.941 | 51 | 24 | 0 | 169 | 219 | 146 | 196 | 3.99e-12 | 64.7 |
MS.gene87486.t1 | AT5G59570 | 45.312 | 64 | 32 | 1 | 156 | 219 | 130 | 190 | 1.03e-11 | 63.2 |
MS.gene87486.t1 | AT5G59570 | 45.312 | 64 | 32 | 1 | 156 | 219 | 130 | 190 | 1.03e-11 | 63.2 |
MS.gene87486.t1 | AT2G40970 | 50.980 | 51 | 25 | 0 | 169 | 219 | 104 | 154 | 2.45e-11 | 61.6 |
MS.gene87486.t1 | AT5G05090 | 41.463 | 82 | 36 | 2 | 138 | 219 | 61 | 130 | 3.56e-11 | 61.6 |
MS.gene87486.t1 | AT2G20570 | 41.892 | 74 | 37 | 1 | 152 | 219 | 129 | 202 | 4.02e-11 | 62.0 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.03e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.14e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.14e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.14e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.14e-11 | 61.6 |
MS.gene87486.t1 | AT4G18020 | 39.706 | 68 | 38 | 1 | 152 | 219 | 281 | 345 | 7.14e-11 | 61.6 |
MS.gene87486.t1 | AT3G10760 | 50.980 | 51 | 25 | 0 | 169 | 219 | 104 | 154 | 8.79e-11 | 60.8 |
Find 41 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4.1:+76161066 | MS.gene87486:CDS |
TGCTAAAACGAACCTGTAAA+TGG | 0.306750 | 4.1:-76161078 | None:intergenic |
CTTGAATTTGTTGGAAAGAA+AGG | 0.326280 | 4.1:+76160368 | MS.gene87486:CDS |
AGAAACCGCTGATGCAGTTC+TGG | 0.337779 | 4.1:-76160867 | None:intergenic |
TTCTGATGCCTTGAATTTGT+TGG | 0.373586 | 4.1:+76160359 | MS.gene87486:CDS |
TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4.1:-76160452 | None:intergenic |
CACATATTGGACTAAGCCTT+TGG | 0.377509 | 4.1:+76160665 | MS.gene87486:CDS |
CTTTCTTTCCAACAAATTCA+AGG | 0.396613 | 4.1:-76160367 | None:intergenic |
ATCAGAAGCTGTATTGCATT+TGG | 0.403201 | 4.1:-76160343 | None:intergenic |
TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4.1:-76160464 | None:intergenic |
AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4.1:+76160750 | MS.gene87486:CDS |
TTGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4.1:-76160103 | None:intergenic |
TTCTGGCGACCAAGACAAAC+GGG | 0.460294 | 4.1:-76160850 | None:intergenic |
AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4.1:-76160480 | None:intergenic |
TGTAATCGATATCATTATCA+AGG | 0.463829 | 4.1:+76160178 | MS.gene87486:CDS |
AAGTCATAAACATCCATGTT+TGG | 0.465091 | 4.1:-76160426 | None:intergenic |
AATGTGGGGCTTGCACATAT+TGG | 0.467947 | 4.1:+76160652 | MS.gene87486:CDS |
CAAAGAAGGCCCGTTTGTCT+TGG | 0.473177 | 4.1:+76160841 | MS.gene87486:CDS |
GCAATAACCTTGAGACCGGC+TGG | 0.475576 | 4.1:-76160112 | None:intergenic |
AAAAGAAACACATGCAAAGA+AGG | 0.478150 | 4.1:+76160827 | MS.gene87486:CDS |
GTTCTGGCGACCAAGACAAA+CGG | 0.493157 | 4.1:-76160851 | None:intergenic |
CTATATGCTGTCAATCAACT+AGG | 0.499504 | 4.1:+76160888 | MS.gene87486:CDS |
AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4.1:-76160911 | None:intergenic |
ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4.1:+76160636 | MS.gene87486:CDS |
ATATGAAATTGTTGGAAGCT+CGG | 0.515274 | 4.1:+76160758 | MS.gene87486:CDS |
GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4.1:-76160463 | None:intergenic |
TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4.1:+76160637 | MS.gene87486:CDS |
AAAACGAACCTGTAAATGGC+TGG | 0.535893 | 4.1:-76161074 | None:intergenic |
CACTGTCCTCAACTCTATTG+AGG | 0.546156 | 4.1:+76160150 | MS.gene87486:CDS |
ATCATTCCCAGCCGGTCTCA+AGG | 0.552068 | 4.1:+76160105 | MS.gene87486:CDS |
TGAGACCGGCTGGGAATGAT+GGG | 0.577892 | 4.1:-76160102 | None:intergenic |
CTTCATAATAGAACTTGCTG+TGG | 0.579779 | 4.1:-76160622 | None:intergenic |
AATTGCAATAACCTTGAGAC+CGG | 0.581075 | 4.1:-76160116 | None:intergenic |
TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4.1:+76160638 | MS.gene87486:CDS |
TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4.1:+76160413 | MS.gene87486:CDS |
GGTCGCCAGAACTGCATCAG+CGG | 0.609761 | 4.1:+76160862 | MS.gene87486:CDS |
CAATAACCTTGAGACCGGCT+GGG | 0.613963 | 4.1:-76160111 | None:intergenic |
GACAACCCATCATTCCCAGC+CGG | 0.620153 | 4.1:+76160097 | MS.gene87486:CDS |
TCTTACTACATGTTGCCACA+TGG | 0.630006 | 4.1:-76160706 | None:intergenic |
ACATCTCCTCAATAGAGTTG+AGG | 0.637933 | 4.1:-76160156 | None:intergenic |
TGAAATTGTTGGAAGCTCGG+TGG | 0.670504 | 4.1:+76160761 | MS.gene87486:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAGAATATGAAATTGT+TGG | + | chr4.1:76160750-76160769 | MS.gene87486:CDS | 15.0% |
!! | CATATAGTAAAAAAGTAATT+AGG | - | chr4.1:76160934-76160953 | None:intergenic | 15.0% |
!! | AATAAATTCTTACTAATGAC+AGG | - | chr4.1:76160483-76160502 | None:intergenic | 20.0% |
!! | TGGTTCAAAAAAATAGAAAA+CGG | + | chr4.1:76160781-76160800 | MS.gene87486:CDS | 20.0% |
!!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4.1:76161021-76161040 | MS.gene87486:CDS | 20.0% |
!!! | AACATGTTCTTTTTTCATAT+CGG | - | chr4.1:76161053-76161072 | None:intergenic | 20.0% |
!!! | AGAAACTTTAGAATTGAATA+AGG | - | chr4.1:76160225-76160244 | None:intergenic | 20.0% |
!!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4.1:76161022-76161041 | None:intergenic | 20.0% |
!!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4.1:76160989-76161008 | MS.gene87486:intron | 20.0% |
!!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4.1:76160990-76161009 | MS.gene87486:intron | 20.0% |
! | ATTATGAAGTCTATTGAATG+TGG | + | chr4.1:76160636-76160655 | MS.gene87486:CDS | 25.0% |
! | GGTTCAAAAAAATAGAAAAC+GGG | + | chr4.1:76160782-76160801 | MS.gene87486:CDS | 25.0% |
! | GTTCAAAAAAATAGAAAACG+GGG | + | chr4.1:76160783-76160802 | MS.gene87486:CDS | 25.0% |
! | TGTAATCGATATCATTATCA+AGG | + | chr4.1:76160178-76160197 | MS.gene87486:CDS | 25.0% |
! | TTATGAAGTCTATTGAATGT+GGG | + | chr4.1:76160637-76160656 | MS.gene87486:CDS | 25.0% |
!! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4.1:76160991-76161010 | MS.gene87486:intron | 25.0% |
!!! | ACATGTTCTTTTTTCATATC+GGG | - | chr4.1:76161052-76161071 | None:intergenic | 25.0% |
!!! | TTATTTCTCTTTTGTAGTGA+TGG | + | chr4.1:76160590-76160609 | MS.gene87486:intron | 25.0% |
AAAAGAAACACATGCAAAGA+AGG | + | chr4.1:76160827-76160846 | MS.gene87486:CDS | 30.0% | |
AAGTCATAAACATCCATGTT+TGG | - | chr4.1:76160429-76160448 | None:intergenic | 30.0% | |
AGGAAAGAATCATACTATCA+AGG | - | chr4.1:76160914-76160933 | None:intergenic | 30.0% | |
ATATGAAATTGTTGGAAGCT+CGG | + | chr4.1:76160758-76160777 | MS.gene87486:CDS | 30.0% | |
CTTTCTTTCCAACAAATTCA+AGG | - | chr4.1:76160370-76160389 | None:intergenic | 30.0% | |
TATGAAGTCTATTGAATGTG+GGG | + | chr4.1:76160638-76160657 | MS.gene87486:CDS | 30.0% | |
!! | CTTGAATTTGTTGGAAAGAA+AGG | + | chr4.1:76160368-76160387 | MS.gene87486:CDS | 30.0% |
AATTGCAATAACCTTGAGAC+CGG | - | chr4.1:76160119-76160138 | None:intergenic | 35.0% | |
ATCAGAAGCTGTATTGCATT+TGG | - | chr4.1:76160346-76160365 | None:intergenic | 35.0% | |
CTATATGCTGTCAATCAACT+AGG | + | chr4.1:76160888-76160907 | MS.gene87486:CDS | 35.0% | |
TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4.1:76160677-76160696 | MS.gene87486:CDS | 35.0% | |
TGCTAAAACGAACCTGTAAA+TGG | - | chr4.1:76161081-76161100 | None:intergenic | 35.0% | |
TTCTGATGCCTTGAATTTGT+TGG | + | chr4.1:76160359-76160378 | MS.gene87486:CDS | 35.0% | |
! | CTTTGCATGTGTTTCTTTTG+AGG | - | chr4.1:76160826-76160845 | None:intergenic | 35.0% |
! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4.1:76160455-76160474 | None:intergenic | 35.0% |
!! | CTTCATAATAGAACTTGCTG+TGG | - | chr4.1:76160625-76160644 | None:intergenic | 35.0% |
!!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4.1:76160684-76160703 | None:intergenic | 35.0% |
AAAAAGAGGTCAAGACCATG+TGG | + | chr4.1:76160691-76160710 | MS.gene87486:CDS | 40.0% | |
AAAACGAACCTGTAAATGGC+TGG | - | chr4.1:76161077-76161096 | None:intergenic | 40.0% | |
AATCCTAGGCAACTAGACTT+AGG | - | chr4.1:76161140-76161159 | None:intergenic | 40.0% | |
ACATCTCCTCAATAGAGTTG+AGG | - | chr4.1:76160159-76160178 | None:intergenic | 40.0% | |
CACATATTGGACTAAGCCTT+TGG | + | chr4.1:76160665-76160684 | MS.gene87486:CDS | 40.0% | |
TCTTACTACATGTTGCCACA+TGG | - | chr4.1:76160709-76160728 | None:intergenic | 40.0% | |
TGATGCTCATATGCCAAACA+TGG | + | chr4.1:76160413-76160432 | MS.gene87486:CDS | 40.0% | |
! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4.1:76160466-76160485 | None:intergenic | 40.0% |
! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4.1:76160467-76160486 | None:intergenic | 40.0% |
AATGTGGGGCTTGCACATAT+TGG | + | chr4.1:76160652-76160671 | MS.gene87486:CDS | 45.0% | |
ACATGTTGCCAGCCATTTAC+AGG | + | chr4.1:76161066-76161085 | MS.gene87486:CDS | 45.0% | |
CACTGTCCTCAACTCTATTG+AGG | + | chr4.1:76160150-76160169 | MS.gene87486:CDS | 45.0% | |
GTACCTAAGTCTAGTTGCCT+AGG | + | chr4.1:76161134-76161153 | MS.gene87486:intron | 45.0% | |
TGAAATTGTTGGAAGCTCGG+TGG | + | chr4.1:76160761-76160780 | MS.gene87486:CDS | 45.0% | |
AGAAACCGCTGATGCAGTTC+TGG | - | chr4.1:76160870-76160889 | None:intergenic | 50.0% | |
CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4.1:76160841-76160860 | MS.gene87486:CDS | 50.0% | |
CAATAACCTTGAGACCGGCT+GGG | - | chr4.1:76160114-76160133 | None:intergenic | 50.0% | |
GTTCTGGCGACCAAGACAAA+CGG | - | chr4.1:76160854-76160873 | None:intergenic | 50.0% | |
TTCTGGCGACCAAGACAAAC+GGG | - | chr4.1:76160853-76160872 | None:intergenic | 50.0% | |
ATCATTCCCAGCCGGTCTCA+AGG | + | chr4.1:76160105-76160124 | MS.gene87486:CDS | 55.0% | |
GACAACCCATCATTCCCAGC+CGG | + | chr4.1:76160097-76160116 | MS.gene87486:CDS | 55.0% | |
GCAATAACCTTGAGACCGGC+TGG | - | chr4.1:76160115-76160134 | None:intergenic | 55.0% | |
TGAGACCGGCTGGGAATGAT+GGG | - | chr4.1:76160105-76160124 | None:intergenic | 55.0% | |
TTGAGACCGGCTGGGAATGA+TGG | - | chr4.1:76160106-76160125 | None:intergenic | 55.0% | |
GGTCGCCAGAACTGCATCAG+CGG | + | chr4.1:76160862-76160881 | MS.gene87486:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 76160082 | 76161167 | 76160082 | ID=MS.gene87486 |
chr4.1 | mRNA | 76160082 | 76161167 | 76160082 | ID=MS.gene87486.t1;Parent=MS.gene87486 |
chr4.1 | exon | 76160082 | 76160199 | 76160082 | ID=MS.gene87486.t1.exon1;Parent=MS.gene87486.t1 |
chr4.1 | CDS | 76160082 | 76160199 | 76160082 | ID=cds.MS.gene87486.t1;Parent=MS.gene87486.t1 |
chr4.1 | exon | 76160340 | 76160489 | 76160340 | ID=MS.gene87486.t1.exon2;Parent=MS.gene87486.t1 |
chr4.1 | CDS | 76160340 | 76160489 | 76160340 | ID=cds.MS.gene87486.t1;Parent=MS.gene87486.t1 |
chr4.1 | exon | 76160607 | 76160918 | 76160607 | ID=MS.gene87486.t1.exon3;Parent=MS.gene87486.t1 |
chr4.1 | CDS | 76160607 | 76160918 | 76160607 | ID=cds.MS.gene87486.t1;Parent=MS.gene87486.t1 |
chr4.1 | exon | 76161011 | 76161087 | 76161011 | ID=MS.gene87486.t1.exon4;Parent=MS.gene87486.t1 |
chr4.1 | CDS | 76161011 | 76161087 | 76161011 | ID=cds.MS.gene87486.t1;Parent=MS.gene87486.t1 |
chr4.1 | exon | 76161165 | 76161167 | 76161165 | ID=MS.gene87486.t1.exon5;Parent=MS.gene87486.t1 |
chr4.1 | CDS | 76161165 | 76161167 | 76161165 | ID=cds.MS.gene87486.t1;Parent=MS.gene87486.t1 |
Gene Sequence |
Protein sequence |