Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87507.t1 | XP_024626525.1 | 91.7 | 228 | 19 | 0 | 1 | 228 | 1 | 228 | 7.10E-115 | 423.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87507.t1 | Q9SZL8 | 35.1 | 202 | 124 | 4 | 33 | 228 | 46 | 246 | 5.2e-26 | 119.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87507.t1 | A0A072TFJ2 | 92.9 | 196 | 14 | 0 | 33 | 228 | 1 | 196 | 3.3e-98 | 367.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene87507.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87507.t1 | MTR_0402s0040 | 92.857 | 196 | 14 | 0 | 33 | 228 | 1 | 196 | 4.08e-133 | 384 |
MS.gene87507.t1 | MTR_6g017200 | 90.260 | 154 | 15 | 0 | 1 | 154 | 1 | 154 | 7.90e-102 | 292 |
MS.gene87507.t1 | MTR_2g070590 | 89.831 | 118 | 12 | 0 | 44 | 161 | 3 | 120 | 1.27e-73 | 219 |
MS.gene87507.t1 | MTR_1g057920 | 79.310 | 116 | 24 | 0 | 32 | 147 | 8 | 123 | 2.84e-63 | 193 |
MS.gene87507.t1 | MTR_7g113010 | 65.132 | 152 | 38 | 2 | 32 | 182 | 431 | 568 | 6.74e-58 | 192 |
MS.gene87507.t1 | MTR_5g015480 | 64.384 | 146 | 47 | 2 | 34 | 178 | 36 | 177 | 2.72e-55 | 177 |
MS.gene87507.t1 | MTR_0291s0060 | 76.190 | 84 | 20 | 0 | 25 | 108 | 2 | 85 | 1.59e-39 | 131 |
MS.gene87507.t1 | MTR_0137s0040 | 41.558 | 154 | 37 | 1 | 34 | 187 | 12 | 112 | 2.36e-32 | 114 |
MS.gene87507.t1 | MTR_7g074790 | 36.257 | 171 | 88 | 3 | 58 | 227 | 10 | 160 | 1.18e-25 | 100 |
MS.gene87507.t1 | MTR_1g050985 | 77.586 | 58 | 12 | 1 | 130 | 186 | 41 | 98 | 1.34e-23 | 91.3 |
MS.gene87507.t1 | MTR_1g070355 | 29.714 | 175 | 111 | 5 | 58 | 224 | 72 | 242 | 1.07e-20 | 90.5 |
MS.gene87507.t1 | MTR_4g102720 | 30.380 | 158 | 75 | 2 | 58 | 215 | 7 | 129 | 1.12e-19 | 84.3 |
MS.gene87507.t1 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 56 | 172 | 1.05e-18 | 82.0 |
MS.gene87507.t1 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 76 | 192 | 1.34e-18 | 82.0 |
MS.gene87507.t1 | MTR_7g061980 | 40.708 | 113 | 62 | 4 | 58 | 168 | 10 | 119 | 1.49e-18 | 78.6 |
MS.gene87507.t1 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 116 | 232 | 1.63e-18 | 82.4 |
MS.gene87507.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 56 | 158 | 2.41e-18 | 80.9 |
MS.gene87507.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 76 | 178 | 3.64e-18 | 80.9 |
MS.gene87507.t1 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 74 | 176 | 3.88e-18 | 80.9 |
MS.gene87507.t1 | MTR_5g076070 | 31.902 | 163 | 97 | 5 | 64 | 218 | 59 | 215 | 8.35e-18 | 80.5 |
MS.gene87507.t1 | MTR_2g098920 | 40.187 | 107 | 58 | 3 | 58 | 162 | 80 | 182 | 1.80e-17 | 79.3 |
MS.gene87507.t1 | MTR_0558s0020 | 27.273 | 176 | 109 | 4 | 72 | 228 | 50 | 225 | 1.26e-16 | 77.4 |
MS.gene87507.t1 | MTR_1g008290 | 33.913 | 115 | 72 | 1 | 114 | 228 | 7 | 117 | 5.62e-16 | 72.8 |
MS.gene87507.t1 | MTR_1g091013 | 51.282 | 78 | 27 | 1 | 49 | 126 | 3 | 69 | 6.28e-16 | 70.1 |
MS.gene87507.t1 | MTR_1g083640 | 26.344 | 186 | 118 | 4 | 62 | 228 | 55 | 240 | 1.29e-15 | 74.3 |
MS.gene87507.t1 | MTR_3g006370 | 38.462 | 104 | 62 | 2 | 58 | 160 | 50 | 152 | 1.77e-15 | 73.2 |
MS.gene87507.t1 | MTR_5g039760 | 34.706 | 170 | 81 | 6 | 62 | 228 | 14 | 156 | 2.09e-15 | 72.0 |
MS.gene87507.t1 | MTR_6g051425 | 27.586 | 174 | 108 | 6 | 66 | 228 | 25 | 191 | 6.76e-15 | 72.8 |
MS.gene87507.t1 | MTR_2g014100 | 24.731 | 186 | 121 | 4 | 62 | 228 | 48 | 233 | 1.43e-14 | 70.9 |
MS.gene87507.t1 | MTR_1g019850 | 29.282 | 181 | 107 | 5 | 12 | 190 | 35 | 196 | 6.70e-13 | 66.2 |
MS.gene87507.t1 | MTR_7g446520 | 31.098 | 164 | 95 | 4 | 61 | 223 | 91 | 237 | 8.13e-13 | 67.0 |
MS.gene87507.t1 | MTR_2g098880 | 36.190 | 105 | 64 | 2 | 58 | 160 | 61 | 164 | 9.52e-13 | 65.9 |
MS.gene87507.t1 | MTR_2g098880 | 36.190 | 105 | 64 | 2 | 58 | 160 | 73 | 176 | 1.12e-12 | 65.9 |
MS.gene87507.t1 | MTR_0019s0290 | 31.429 | 105 | 71 | 1 | 125 | 228 | 47 | 151 | 1.25e-12 | 63.9 |
MS.gene87507.t1 | MTR_0337s0040 | 31.193 | 109 | 74 | 1 | 121 | 228 | 78 | 186 | 3.06e-12 | 64.3 |
MS.gene87507.t1 | MTR_6g090505 | 27.660 | 141 | 87 | 3 | 103 | 228 | 20 | 160 | 1.42e-11 | 63.5 |
MS.gene87507.t1 | MTR_1g055240 | 29.524 | 105 | 73 | 1 | 125 | 228 | 32 | 136 | 6.88e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87507.t1 | AT4G38180 | 35.149 | 202 | 124 | 4 | 33 | 228 | 46 | 246 | 2.49e-29 | 115 |
MS.gene87507.t1 | AT3G59470 | 34.857 | 175 | 102 | 3 | 1 | 165 | 3 | 175 | 5.77e-20 | 85.9 |
MS.gene87507.t1 | AT3G59470 | 34.857 | 175 | 102 | 3 | 1 | 165 | 3 | 175 | 5.77e-20 | 85.9 |
MS.gene87507.t1 | AT3G59470 | 34.857 | 175 | 102 | 3 | 1 | 165 | 15 | 187 | 6.15e-20 | 85.9 |
MS.gene87507.t1 | AT4G12850 | 37.705 | 122 | 70 | 4 | 51 | 172 | 4 | 119 | 1.46e-17 | 76.6 |
MS.gene87507.t1 | AT4G12850 | 38.739 | 111 | 64 | 3 | 51 | 161 | 4 | 110 | 6.98e-17 | 74.7 |
MS.gene87507.t1 | AT4G12850 | 38.739 | 111 | 64 | 3 | 51 | 161 | 4 | 110 | 1.01e-16 | 75.5 |
MS.gene87507.t1 | AT1G10240 | 28.804 | 184 | 121 | 6 | 50 | 225 | 40 | 221 | 7.07e-16 | 76.6 |
MS.gene87507.t1 | AT1G10240 | 28.804 | 184 | 121 | 6 | 50 | 225 | 40 | 221 | 7.07e-16 | 76.6 |
MS.gene87507.t1 | AT3G07500 | 40.000 | 105 | 62 | 1 | 58 | 162 | 33 | 136 | 1.37e-15 | 73.2 |
MS.gene87507.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 62 | 172 | 1 | 107 | 8.45e-15 | 73.6 |
MS.gene87507.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 62 | 172 | 1 | 107 | 8.45e-15 | 73.6 |
MS.gene87507.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 62 | 172 | 1 | 107 | 8.85e-15 | 73.2 |
MS.gene87507.t1 | AT1G76320 | 35.135 | 111 | 68 | 2 | 62 | 172 | 1 | 107 | 1.27e-14 | 72.8 |
MS.gene87507.t1 | AT2G43280 | 39.604 | 101 | 53 | 3 | 64 | 160 | 28 | 124 | 2.64e-14 | 69.7 |
MS.gene87507.t1 | AT5G18960 | 37.383 | 107 | 51 | 3 | 58 | 163 | 43 | 134 | 3.03e-12 | 65.9 |
MS.gene87507.t1 | AT5G18960 | 37.383 | 107 | 51 | 3 | 58 | 163 | 43 | 134 | 3.03e-12 | 65.9 |
MS.gene87507.t1 | AT4G15090 | 25.000 | 172 | 127 | 2 | 58 | 228 | 51 | 221 | 4.72e-12 | 65.5 |
MS.gene87507.t1 | AT4G15090 | 25.000 | 172 | 127 | 2 | 58 | 228 | 51 | 221 | 4.72e-12 | 65.5 |
MS.gene87507.t1 | AT4G15090 | 25.000 | 172 | 127 | 2 | 58 | 228 | 51 | 221 | 4.72e-12 | 65.5 |
MS.gene87507.t1 | AT4G15090 | 25.000 | 172 | 127 | 2 | 58 | 228 | 51 | 221 | 4.72e-12 | 65.5 |
MS.gene87507.t1 | AT4G15090 | 25.000 | 172 | 127 | 2 | 58 | 228 | 51 | 221 | 4.72e-12 | 65.5 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.03e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.03e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.03e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.36e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.36e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 7.41e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 1 | 102 | 8.38e-12 | 64.7 |
MS.gene87507.t1 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 8.45e-12 | 64.7 |
MS.gene87507.t1 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 8.45e-12 | 64.7 |
MS.gene87507.t1 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 8.45e-12 | 64.7 |
MS.gene87507.t1 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 1 | 102 | 8.69e-12 | 64.7 |
MS.gene87507.t1 | AT2G43280 | 38.043 | 92 | 49 | 3 | 73 | 160 | 2 | 89 | 1.09e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGATTGTGTCAATAAAT+TGG | 0.215486 | 4.1:+75987935 | MS.gene87507:intron |
CTATAGTGACTGTTTCCTTT+TGG | 0.265913 | 4.1:-75988510 | None:intergenic |
TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 4.1:+75988092 | MS.gene87507:CDS |
ATATATTCATGCAAATCTTT+TGG | 0.296908 | 4.1:-75988419 | None:intergenic |
TCTGCTCTAGGCTCCCCTTT+TGG | 0.322934 | 4.1:-75988203 | None:intergenic |
AATGAGTATAGTAAAAGAAT+TGG | 0.336174 | 4.1:+75988068 | MS.gene87507:CDS |
ATTGTCTTGGGAGATGAATA+TGG | 0.358947 | 4.1:+75988389 | MS.gene87507:CDS |
CTGTATTCCACCAGCTTGCT+TGG | 0.359827 | 4.1:-75988444 | None:intergenic |
GGAAATAAAAGCAGAGTTGA+TGG | 0.361988 | 4.1:+75988113 | MS.gene87507:CDS |
TATAGTAAAAGAATTGGATT+TGG | 0.393932 | 4.1:+75988074 | MS.gene87507:CDS |
AGAAATTAGAACGGGATGTT+CGG | 0.397002 | 4.1:+75988223 | MS.gene87507:CDS |
CGAATTACCTTGAAACCAAA+AGG | 0.436415 | 4.1:+75988495 | MS.gene87507:CDS |
AACGGGATGTTCGGCGCGTA+TGG | 0.445905 | 4.1:+75988232 | MS.gene87507:CDS |
GACAAAAGACGTCAACCAAA+AGG | 0.461065 | 4.1:+75988188 | MS.gene87507:CDS |
TAGTGTTGGTAGCAGGATGA+TGG | 0.465525 | 4.1:-75987596 | None:intergenic |
CAATGGCAGCGGCGCTAGAA+TGG | 0.468527 | 4.1:-75987644 | None:intergenic |
CACCTCGTACACCCTCTTTG+TGG | 0.472129 | 4.1:-75988163 | None:intergenic |
GCTGCCATTGTTGTTGATCA+AGG | 0.480338 | 4.1:+75987657 | MS.gene87507:CDS |
GGTTCGTTAGTGTTGGTAGC+AGG | 0.481503 | 4.1:-75987603 | None:intergenic |
CCCGTTCTAATTTCTGCTCT+AGG | 0.484916 | 4.1:-75988215 | None:intergenic |
AGTGTTGGTAGCAGGATGAT+GGG | 0.490017 | 4.1:-75987595 | None:intergenic |
TGGTCGGAGACGGCGGCGAC+GGG | 0.493538 | 4.1:-75987624 | None:intergenic |
ACAAAAGACGTCAACCAAAA+GGG | 0.496414 | 4.1:+75988189 | MS.gene87507:CDS |
ACAAGCATCACAAATTGTCT+TGG | 0.503759 | 4.1:+75988376 | MS.gene87507:CDS |
CGAATCATATGAACATGCTC+AGG | 0.508001 | 4.1:-75988329 | None:intergenic |
TGCGAACAATGTACCTCACT+TGG | 0.508576 | 4.1:+75988004 | MS.gene87507:CDS |
TGGTTTCAAGGTAATTCGTA+AGG | 0.515695 | 4.1:-75988490 | None:intergenic |
CAAGCATCACAAATTGTCTT+GGG | 0.518135 | 4.1:+75988377 | MS.gene87507:CDS |
GGAAATGAAGTTTGATTCTG+AGG | 0.518232 | 4.1:+75988025 | MS.gene87507:CDS |
CAAAATGTGCAACACGGACT+AGG | 0.518753 | 4.1:+75987975 | MS.gene87507:CDS |
CCTAGAGCAGAAATTAGAAC+GGG | 0.531792 | 4.1:+75988215 | MS.gene87507:CDS |
ATGGTCGGAGACGGCGGCGA+CGG | 0.532705 | 4.1:-75987625 | None:intergenic |
GGCGACGGGTTCGTTAGTGT+TGG | 0.541693 | 4.1:-75987610 | None:intergenic |
GAAGTTTGATTCTGAGGCGG+CGG | 0.545649 | 4.1:+75988031 | MS.gene87507:CDS |
GGCGCTAGAATGGTCGGAGA+CGG | 0.546289 | 4.1:-75987634 | None:intergenic |
GGCAGCGGCGCTAGAATGGT+CGG | 0.570384 | 4.1:-75987640 | None:intergenic |
GTGTTGGTAGCAGGATGATG+GGG | 0.582430 | 4.1:-75987594 | None:intergenic |
GTATGGTTATTTCACTCGAT+CGG | 0.586251 | 4.1:+75988249 | MS.gene87507:CDS |
TATATATCCAAGCAAGCTGG+TGG | 0.588298 | 4.1:+75988437 | MS.gene87507:CDS |
GAATATATATCCAAGCAAGC+TGG | 0.590655 | 4.1:+75988434 | MS.gene87507:CDS |
GCTGGTGGAATACAGACAGT+TGG | 0.597501 | 4.1:+75988452 | MS.gene87507:CDS |
CATGCTCAGGTTGAAGTTGG+TGG | 0.600927 | 4.1:-75988316 | None:intergenic |
TCAAACTTCATTTCCAAGTG+AGG | 0.602359 | 4.1:-75988017 | None:intergenic |
GCCTAGAGCAGAAATTAGAA+CGG | 0.602891 | 4.1:+75988214 | MS.gene87507:CDS |
GCTAGAATGGTCGGAGACGG+CGG | 0.605325 | 4.1:-75987631 | None:intergenic |
CAAAAGACGTCAACCAAAAG+GGG | 0.607006 | 4.1:+75988190 | MS.gene87507:CDS |
GAACATGCTCAGGTTGAAGT+TGG | 0.607804 | 4.1:-75988319 | None:intergenic |
AGATTCACATGCCACAAAGA+GGG | 0.622687 | 4.1:+75988152 | MS.gene87507:CDS |
TTGATCAACAACAATGGCAG+CGG | 0.627743 | 4.1:-75987655 | None:intergenic |
AAGATTCACATGCCACAAAG+AGG | 0.635428 | 4.1:+75988151 | MS.gene87507:CDS |
AATGAAGTTTGATTCTGAGG+CGG | 0.641025 | 4.1:+75988028 | MS.gene87507:CDS |
ATTACCTTGATCAACAACAA+TGG | 0.649121 | 4.1:-75987661 | None:intergenic |
CATGAACAAAATGTGCAACA+CGG | 0.658217 | 4.1:+75987969 | MS.gene87507:CDS |
TGCCACAAAGAGGGTGTACG+AGG | 0.663321 | 4.1:+75988161 | MS.gene87507:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACCAAAATTTACAATTA+AGG | - | chr4.1:75987915-75987934 | None:intergenic | 15.0% |
!!! | TATACATATATATAGCTTTA+TGG | + | chr4.1:75987799-75987818 | MS.gene87507:intron | 15.0% |
!! | AATGAGTATAGTAAAAGAAT+TGG | + | chr4.1:75988068-75988087 | MS.gene87507:CDS | 20.0% |
!! | GACAAATAATAAAATAGAGA+AGG | - | chr4.1:75987695-75987714 | None:intergenic | 20.0% |
!! | TATAGTAAAAGAATTGGATT+TGG | + | chr4.1:75988074-75988093 | MS.gene87507:CDS | 20.0% |
!!! | ATATATTCATGCAAATCTTT+TGG | - | chr4.1:75988422-75988441 | None:intergenic | 20.0% |
!!! | TTGATGAAAAATTAGTTTCT+AGG | + | chr4.1:75987747-75987766 | MS.gene87507:intron | 20.0% |
! | ATGTATGAAATCATCACTTA+TGG | + | chr4.1:75987886-75987905 | MS.gene87507:intron | 25.0% |
! | TTCAGATTGTGTCAATAAAT+TGG | + | chr4.1:75987935-75987954 | MS.gene87507:intron | 25.0% |
ATTACCTTGATCAACAACAA+TGG | - | chr4.1:75987664-75987683 | None:intergenic | 30.0% | |
TATGAAATCATCACTTATGG+TGG | + | chr4.1:75987889-75987908 | MS.gene87507:intron | 30.0% | |
!! | GTGGCCTTAATTGTAAATTT+TGG | + | chr4.1:75987908-75987927 | MS.gene87507:intron | 30.0% |
ACAAAAGACGTCAACCAAAA+GGG | + | chr4.1:75988189-75988208 | MS.gene87507:CDS | 35.0% | |
ACAAGCATCACAAATTGTCT+TGG | + | chr4.1:75988376-75988395 | MS.gene87507:CDS | 35.0% | |
AGAAATTAGAACGGGATGTT+CGG | + | chr4.1:75988223-75988242 | MS.gene87507:CDS | 35.0% | |
ATTGTCTTGGGAGATGAATA+TGG | + | chr4.1:75988389-75988408 | MS.gene87507:CDS | 35.0% | |
CAAGCATCACAAATTGTCTT+GGG | + | chr4.1:75988377-75988396 | MS.gene87507:CDS | 35.0% | |
CATGAACAAAATGTGCAACA+CGG | + | chr4.1:75987969-75987988 | MS.gene87507:CDS | 35.0% | |
CGAATTACCTTGAAACCAAA+AGG | + | chr4.1:75988495-75988514 | MS.gene87507:CDS | 35.0% | |
GAATATATATCCAAGCAAGC+TGG | + | chr4.1:75988434-75988453 | MS.gene87507:CDS | 35.0% | |
GGAAATAAAAGCAGAGTTGA+TGG | + | chr4.1:75988113-75988132 | MS.gene87507:CDS | 35.0% | |
GGAAATGAAGTTTGATTCTG+AGG | + | chr4.1:75988025-75988044 | MS.gene87507:CDS | 35.0% | |
TCAAACTTCATTTCCAAGTG+AGG | - | chr4.1:75988020-75988039 | None:intergenic | 35.0% | |
TGGTTTCAAGGTAATTCGTA+AGG | - | chr4.1:75988493-75988512 | None:intergenic | 35.0% | |
TTTGGTATTCGTCGAGAATA+TGG | + | chr4.1:75988092-75988111 | MS.gene87507:CDS | 35.0% | |
! | AATGAAGTTTGATTCTGAGG+CGG | + | chr4.1:75988028-75988047 | MS.gene87507:CDS | 35.0% |
! | CTATAGTGACTGTTTCCTTT+TGG | - | chr4.1:75988513-75988532 | None:intergenic | 35.0% |
! | GTATGGTTATTTCACTCGAT+CGG | + | chr4.1:75988249-75988268 | MS.gene87507:CDS | 35.0% |
!!! | ACTGTTTCCTTTTGGTTTCA+AGG | - | chr4.1:75988505-75988524 | None:intergenic | 35.0% |
AAGATTCACATGCCACAAAG+AGG | + | chr4.1:75988151-75988170 | MS.gene87507:CDS | 40.0% | |
AGATTCACATGCCACAAAGA+GGG | + | chr4.1:75988152-75988171 | MS.gene87507:CDS | 40.0% | |
CAAAAGACGTCAACCAAAAG+GGG | + | chr4.1:75988190-75988209 | MS.gene87507:CDS | 40.0% | |
CCTAGAGCAGAAATTAGAAC+GGG | + | chr4.1:75988215-75988234 | MS.gene87507:CDS | 40.0% | |
CGAATCATATGAACATGCTC+AGG | - | chr4.1:75988332-75988351 | None:intergenic | 40.0% | |
GACAAAAGACGTCAACCAAA+AGG | + | chr4.1:75988188-75988207 | MS.gene87507:CDS | 40.0% | |
GCCTAGAGCAGAAATTAGAA+CGG | + | chr4.1:75988214-75988233 | MS.gene87507:CDS | 40.0% | |
GGTCACTATGTGTGTAACTT+CGG | + | chr4.1:75987820-75987839 | MS.gene87507:intron | 40.0% | |
TATATATCCAAGCAAGCTGG+TGG | + | chr4.1:75988437-75988456 | MS.gene87507:CDS | 40.0% | |
TTGATCAACAACAATGGCAG+CGG | - | chr4.1:75987658-75987677 | None:intergenic | 40.0% | |
CAAAATGTGCAACACGGACT+AGG | + | chr4.1:75987975-75987994 | MS.gene87507:CDS | 45.0% | |
CCCGTTCTAATTTCTGCTCT+AGG | - | chr4.1:75988218-75988237 | None:intergenic | 45.0% | |
TGCGAACAATGTACCTCACT+TGG | + | chr4.1:75988004-75988023 | MS.gene87507:CDS | 45.0% | |
! | GCTGCCATTGTTGTTGATCA+AGG | + | chr4.1:75987657-75987676 | MS.gene87507:CDS | 45.0% |
!! | AGTGTTGGTAGCAGGATGAT+GGG | - | chr4.1:75987598-75987617 | None:intergenic | 45.0% |
!! | GAACATGCTCAGGTTGAAGT+TGG | - | chr4.1:75988322-75988341 | None:intergenic | 45.0% |
!! | TAGTGTTGGTAGCAGGATGA+TGG | - | chr4.1:75987599-75987618 | None:intergenic | 45.0% |
GCTGGTGGAATACAGACAGT+TGG | + | chr4.1:75988452-75988471 | MS.gene87507:CDS | 50.0% | |
! | CTGTATTCCACCAGCTTGCT+TGG | - | chr4.1:75988447-75988466 | None:intergenic | 50.0% |
!! | CATGCTCAGGTTGAAGTTGG+TGG | - | chr4.1:75988319-75988338 | None:intergenic | 50.0% |
!! | GAAGTTTGATTCTGAGGCGG+CGG | + | chr4.1:75988031-75988050 | MS.gene87507:CDS | 50.0% |
!! | GGTTCGTTAGTGTTGGTAGC+AGG | - | chr4.1:75987606-75987625 | None:intergenic | 50.0% |
!! | GTGTTGGTAGCAGGATGATG+GGG | - | chr4.1:75987597-75987616 | None:intergenic | 50.0% |
CACCTCGTACACCCTCTTTG+TGG | - | chr4.1:75988166-75988185 | None:intergenic | 55.0% | |
! | TGCCACAAAGAGGGTGTACG+AGG | + | chr4.1:75988161-75988180 | MS.gene87507:CDS | 55.0% |
!! | TCTGCTCTAGGCTCCCCTTT+TGG | - | chr4.1:75988206-75988225 | None:intergenic | 55.0% |
AACGGGATGTTCGGCGCGTA+TGG | + | chr4.1:75988232-75988251 | MS.gene87507:CDS | 60.0% | |
CAATGGCAGCGGCGCTAGAA+TGG | - | chr4.1:75987647-75987666 | None:intergenic | 60.0% | |
GCTAGAATGGTCGGAGACGG+CGG | - | chr4.1:75987634-75987653 | None:intergenic | 60.0% | |
GGCGCTAGAATGGTCGGAGA+CGG | - | chr4.1:75987637-75987656 | None:intergenic | 60.0% | |
! | GGCGACGGGTTCGTTAGTGT+TGG | - | chr4.1:75987613-75987632 | None:intergenic | 60.0% |
GGCAGCGGCGCTAGAATGGT+CGG | - | chr4.1:75987643-75987662 | None:intergenic | 65.0% | |
ATGGTCGGAGACGGCGGCGA+CGG | - | chr4.1:75987628-75987647 | None:intergenic | 70.0% | |
TGGTCGGAGACGGCGGCGAC+GGG | - | chr4.1:75987627-75987646 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 75987585 | 75988532 | 75987585 | ID=MS.gene87507 |
chr4.1 | mRNA | 75987585 | 75988532 | 75987585 | ID=MS.gene87507.t1;Parent=MS.gene87507 |
chr4.1 | exon | 75987585 | 75987678 | 75987585 | ID=MS.gene87507.t1.exon1;Parent=MS.gene87507.t1 |
chr4.1 | CDS | 75987585 | 75987678 | 75987585 | ID=cds.MS.gene87507.t1;Parent=MS.gene87507.t1 |
chr4.1 | exon | 75987940 | 75988532 | 75987940 | ID=MS.gene87507.t1.exon2;Parent=MS.gene87507.t1 |
chr4.1 | CDS | 75987940 | 75988532 | 75987940 | ID=cds.MS.gene87507.t1;Parent=MS.gene87507.t1 |
Gene Sequence |
Protein sequence |