Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87640.t1 | XP_024636287.1 | 79.2 | 544 | 92 | 3 | 1 | 529 | 1 | 538 | 5.40E-158 | 567.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87640.t1 | Q9XEC3 | 33.1 | 474 | 226 | 11 | 72 | 516 | 80 | 491 | 6.7e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87640.t1 | A0A396I6D6 | 76.2 | 541 | 114 | 1 | 5 | 530 | 7 | 547 | 9.3e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87640.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87640.t1 | MTR_4g047580 | 75.184 | 544 | 68 | 4 | 1 | 529 | 1 | 492 | 0.0 | 771 |
| MS.gene87640.t1 | MTR_4g049790 | 66.179 | 547 | 108 | 7 | 1 | 530 | 28 | 514 | 0.0 | 652 |
| MS.gene87640.t1 | MTR_4g049760 | 68.946 | 541 | 108 | 2 | 5 | 530 | 7 | 502 | 0.0 | 648 |
| MS.gene87640.t1 | MTR_2g088000 | 39.053 | 507 | 224 | 16 | 44 | 531 | 118 | 558 | 1.11e-78 | 258 |
| MS.gene87640.t1 | MTR_2g023930 | 33.208 | 533 | 251 | 20 | 33 | 529 | 67 | 530 | 9.65e-52 | 185 |
| MS.gene87640.t1 | MTR_4g132430 | 49.333 | 225 | 90 | 6 | 311 | 516 | 105 | 324 | 3.90e-48 | 171 |
| MS.gene87640.t1 | MTR_4g132430 | 48.889 | 225 | 91 | 5 | 311 | 516 | 239 | 458 | 2.88e-47 | 172 |
| MS.gene87640.t1 | MTR_3g053330 | 28.902 | 519 | 233 | 19 | 33 | 528 | 39 | 444 | 1.14e-38 | 147 |
| MS.gene87640.t1 | MTR_7g110720 | 39.035 | 228 | 97 | 7 | 318 | 529 | 174 | 375 | 1.11e-28 | 118 |
| MS.gene87640.t1 | MTR_7g110720 | 39.035 | 228 | 97 | 7 | 318 | 529 | 201 | 402 | 1.23e-28 | 118 |
| MS.gene87640.t1 | MTR_2g045360 | 32.677 | 254 | 123 | 7 | 304 | 531 | 182 | 413 | 1.30e-23 | 103 |
| MS.gene87640.t1 | MTR_7g009730 | 36.290 | 124 | 58 | 2 | 290 | 392 | 170 | 293 | 1.14e-14 | 77.0 |
| MS.gene87640.t1 | MTR_4g094412 | 36.424 | 151 | 65 | 3 | 318 | 451 | 228 | 364 | 8.56e-14 | 74.3 |
| MS.gene87640.t1 | MTR_4g094412 | 36.424 | 151 | 65 | 3 | 318 | 451 | 219 | 355 | 9.11e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87640.t1 | AT4G04450 | 35.497 | 493 | 217 | 13 | 70 | 528 | 78 | 503 | 3.88e-62 | 213 |
| MS.gene87640.t1 | AT4G04450 | 34.874 | 476 | 209 | 13 | 87 | 528 | 1 | 409 | 5.30e-57 | 196 |
| MS.gene87640.t1 | AT1G62300 | 31.627 | 547 | 226 | 17 | 33 | 528 | 89 | 538 | 3.66e-48 | 176 |
| MS.gene87640.t1 | AT4G22070 | 34.077 | 493 | 237 | 12 | 70 | 528 | 76 | 514 | 9.89e-46 | 168 |
| MS.gene87640.t1 | AT4G22070 | 34.077 | 493 | 237 | 12 | 70 | 528 | 76 | 514 | 9.89e-46 | 168 |
| MS.gene87640.t1 | AT4G22070 | 34.077 | 493 | 237 | 12 | 70 | 528 | 76 | 514 | 9.89e-46 | 168 |
| MS.gene87640.t1 | AT4G22070 | 34.077 | 493 | 237 | 12 | 70 | 528 | 76 | 514 | 9.89e-46 | 168 |
| MS.gene87640.t1 | AT4G01720 | 35.593 | 295 | 133 | 9 | 267 | 525 | 170 | 443 | 6.25e-21 | 96.3 |
| MS.gene87640.t1 | AT1G68150 | 39.259 | 135 | 62 | 2 | 318 | 437 | 220 | 349 | 9.74e-19 | 88.6 |
| MS.gene87640.t1 | AT5G15130 | 43.478 | 92 | 37 | 1 | 316 | 392 | 210 | 301 | 2.39e-15 | 79.3 |
| MS.gene87640.t1 | AT5G15130 | 43.478 | 92 | 37 | 1 | 316 | 392 | 168 | 259 | 2.43e-15 | 79.0 |
| MS.gene87640.t1 | AT1G18860 | 25.123 | 406 | 201 | 12 | 111 | 468 | 48 | 398 | 1.96e-12 | 70.1 |
| MS.gene87640.t1 | AT1G69810 | 38.788 | 165 | 77 | 7 | 306 | 453 | 118 | 275 | 2.25e-12 | 68.9 |
| MS.gene87640.t1 | AT1G69810 | 38.788 | 165 | 77 | 7 | 306 | 453 | 176 | 333 | 2.67e-12 | 68.9 |
Find 94 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAATCTGCAGGAAAATT+TGG | 0.148510 | 4.1:-49349288 | None:intergenic |
| GAAGTTTCTGATGGAAAATT+TGG | 0.155377 | 4.1:+49347190 | MS.gene87640:CDS |
| CCTAACTGATCCTTACTTCT+AGG | 0.157547 | 4.1:-49347439 | None:intergenic |
| TTAACTATCTGAACAATATT+TGG | 0.178954 | 4.1:-49349246 | None:intergenic |
| ATTGGGGCCAATGAAATTTA+TGG | 0.197769 | 4.1:+49347123 | MS.gene87640:CDS |
| AATAGAGTTAGATTTCTTTA+AGG | 0.203537 | 4.1:+49345294 | MS.gene87640:CDS |
| GCAGAACTCTGAGTGATTAA+AGG | 0.218319 | 4.1:-49349114 | None:intergenic |
| GCTTCTCTTACTTCCATTAT+TGG | 0.227500 | 4.1:+49349312 | MS.gene87640:CDS |
| GGGTTCCTTTGTGGAGTATT+TGG | 0.246074 | 4.1:-49349075 | None:intergenic |
| TCAAGTGTAATTGTTGTAAA+TGG | 0.247776 | 4.1:-49349039 | None:intergenic |
| CATATTGTTAAGGAAGTTAA+AGG | 0.249246 | 4.1:+49347043 | MS.gene87640:CDS |
| GTATTTGATGGAAACTTTAA+AGG | 0.252144 | 4.1:+49347073 | MS.gene87640:CDS |
| CTTTAACTTCCTTAACAATA+TGG | 0.259453 | 4.1:-49347042 | None:intergenic |
| TCTTGGATTGGCTAGTAATA+AGG | 0.268615 | 4.1:+49347147 | MS.gene87640:CDS |
| CCAATGAAATTTATGGATCT+TGG | 0.289402 | 4.1:+49347130 | MS.gene87640:CDS |
| ACTGAGAATGGTGGAGTATT+GGG | 0.295665 | 4.1:+49347106 | MS.gene87640:CDS |
| CGAGATTGAACGAAAGAAAA+TGG | 0.301328 | 4.1:+49346934 | MS.gene87640:CDS |
| CTTTGGCTGCTGCAGGTAAC+AGG | 0.303664 | 4.1:-49348873 | None:intergenic |
| AATAAGGGTAAGGAAGTTAA+AGG | 0.305666 | 4.1:+49347163 | MS.gene87640:CDS |
| AAGGTTAAAGAAGTGTTTAA+TGG | 0.314983 | 4.1:+49347286 | MS.gene87640:CDS |
| TGCTGGATTGGATACTAATA+AGG | 0.317920 | 4.1:+49347267 | MS.gene87640:CDS |
| TAACTAAGCATCACCAATAA+TGG | 0.334467 | 4.1:-49349325 | None:intergenic |
| TACTGATACACCATCTTTGT+TGG | 0.335785 | 4.1:+49345378 | MS.gene87640:CDS |
| AAAGGAGTTTGAAACTGATC+TGG | 0.348918 | 4.1:-49349096 | None:intergenic |
| AACTGATCTGGGTTCCTTTG+TGG | 0.354361 | 4.1:-49349084 | None:intergenic |
| CTACTAGTATTGGTAGTAAC+AGG | 0.370957 | 4.1:-49345589 | None:intergenic |
| AAAAGGAAATTTGTTGATGC+TGG | 0.371075 | 4.1:+49347250 | MS.gene87640:CDS |
| GCCATTTCTTTGGCTGCTGC+AGG | 0.373631 | 4.1:-49348880 | None:intergenic |
| CAAATATCATCTCATGAAAC+AGG | 0.382194 | 4.1:+49345271 | MS.gene87640:CDS |
| AGCTGGCCCTTCACAACTAT+TGG | 0.390618 | 4.1:+49349218 | MS.gene87640:CDS |
| CCAAGATCCATAAATTTCAT+TGG | 0.398439 | 4.1:-49347130 | None:intergenic |
| TTTCAGATGGCTATTCTTCA+AGG | 0.410643 | 4.1:+49346911 | MS.gene87640:intron |
| AACTGAGAATGGTGGAGTAT+TGG | 0.413563 | 4.1:+49347105 | MS.gene87640:CDS |
| AAAGGAAAAGAAGTATTTGA+TGG | 0.422383 | 4.1:+49347061 | MS.gene87640:CDS |
| GAAATTTGTTGATGCTGGAT+TGG | 0.422880 | 4.1:+49347255 | MS.gene87640:CDS |
| TGGTTCTGATTAGGTATTTG+AGG | 0.425279 | 4.1:-49349159 | None:intergenic |
| TATTTGATGGAAACTTTAAA+GGG | 0.425379 | 4.1:+49347074 | MS.gene87640:CDS |
| GAAATTTATGGATCTTGGAT+TGG | 0.436594 | 4.1:+49347135 | MS.gene87640:CDS |
| CTTGGATTGGCTAGTAATAA+GGG | 0.449698 | 4.1:+49347148 | MS.gene87640:CDS |
| GATGCAATACCATATTGTTA+AGG | 0.458298 | 4.1:+49347033 | MS.gene87640:CDS |
| ACCTGCAGCAGCCAAAGAAA+TGG | 0.462652 | 4.1:+49348879 | MS.gene87640:CDS |
| GGTTCTGATTAGGTATTTGA+GGG | 0.462686 | 4.1:-49349158 | None:intergenic |
| AATGAGAAAACCTAGAAGTA+AGG | 0.465713 | 4.1:+49347429 | MS.gene87640:CDS |
| CCTAGAAGTAAGGATCAGTT+AGG | 0.469639 | 4.1:+49347439 | MS.gene87640:CDS |
| AGTTGGTGCAAAGGCAATGT+AGG | 0.470135 | 4.1:+49347347 | MS.gene87640:CDS |
| ATGATCATTGTCAGTGGCAG+AGG | 0.475820 | 4.1:-49345350 | None:intergenic |
| TAGTAGTGATCAATCATTGA+TGG | 0.477983 | 4.1:+49345606 | MS.gene87640:CDS |
| TGGTTGCTCAGTCCGAAAAC+AGG | 0.478137 | 4.1:+49347790 | MS.gene87640:CDS |
| GCATCAACATCAAGTAATGA+TGG | 0.486827 | 4.1:+49348940 | MS.gene87640:CDS |
| TAATAACATTACCTCCCTCT+TGG | 0.496688 | 4.1:-49345665 | None:intergenic |
| GAGTTAATGATGACTTGGAA+AGG | 0.508115 | 4.1:-49345226 | None:intergenic |
| AAGCATCGAGGTTGCTTCGA+AGG | 0.510775 | 4.1:+49347474 | MS.gene87640:CDS |
| GTGATGGAGAATTAGTGAAA+AGG | 0.514995 | 4.1:+49347233 | MS.gene87640:CDS |
| AGAGAAGCTAACAAATCTGC+AGG | 0.517768 | 4.1:-49349297 | None:intergenic |
| AAGGAGTTTGAAACTGATCT+GGG | 0.518182 | 4.1:-49349095 | None:intergenic |
| CTGCAGGTAACAGGTGGTTG+TGG | 0.520577 | 4.1:-49348864 | None:intergenic |
| GTTGTAAATGGAGCAGAAGC+TGG | 0.523998 | 4.1:-49349027 | None:intergenic |
| TGGAGGAGTTAATGATGACT+TGG | 0.535839 | 4.1:-49345231 | None:intergenic |
| GGTATTGCCAATAGTTGTGA+AGG | 0.538900 | 4.1:-49349225 | None:intergenic |
| AGTATTGGTAGTAACAGGAT+TGG | 0.539477 | 4.1:-49345584 | None:intergenic |
| ATTGGCTAGTAATAAGGGTA+AGG | 0.543564 | 4.1:+49347153 | MS.gene87640:CDS |
| TGATTGATCACTACTAGTAT+TGG | 0.547112 | 4.1:-49345599 | None:intergenic |
| ACAATTTATAATACTTACCA+TGG | 0.550222 | 4.1:-49347593 | None:intergenic |
| AGTTAATGATGACTTGGAAA+GGG | 0.551831 | 4.1:-49345225 | None:intergenic |
| GATCAATCATTGATGGATGA+TGG | 0.555481 | 4.1:+49345613 | MS.gene87640:CDS |
| AAAGGACAAGAAGTTTCTGA+TGG | 0.557815 | 4.1:+49347181 | MS.gene87640:CDS |
| CGATAATAAGCTTTAGAACA+CGG | 0.558230 | 4.1:-49347752 | None:intergenic |
| AAAATTTGGATTAGCAGCAA+TGG | 0.561959 | 4.1:-49349274 | None:intergenic |
| GTATTGGTAGTAACAGGATT+GGG | 0.564404 | 4.1:-49345583 | None:intergenic |
| AGCTTGAGTTCCAACAAAGA+TGG | 0.564900 | 4.1:-49345388 | None:intergenic |
| GATAATAAGCTTTAGAACAC+GGG | 0.570205 | 4.1:-49347751 | None:intergenic |
| AAGAAGCATCTTTGCAGCTG+TGG | 0.582714 | 4.1:-49348914 | None:intergenic |
| GTTGGTGCAAAGGCAATGTA+GGG | 0.584702 | 4.1:+49347348 | MS.gene87640:CDS |
| AACTGAGAATGGTGGAGAGT+TGG | 0.584715 | 4.1:+49347330 | MS.gene87640:CDS |
| TTGAGGGATTATAGAAGCTG+AGG | 0.585116 | 4.1:-49349142 | None:intergenic |
| TACTAATGCTGAGACTGCGA+TGG | 0.595069 | 4.1:+49347384 | MS.gene87640:CDS |
| ATGGTGGAGAGTTGGTGCAA+AGG | 0.595504 | 4.1:+49347338 | MS.gene87640:CDS |
| CTGAGAATGGTGGAGTATTG+GGG | 0.595747 | 4.1:+49347107 | MS.gene87640:CDS |
| GTATTGCCAATAGTTGTGAA+GGG | 0.598828 | 4.1:-49349224 | None:intergenic |
| TATCGCTACAGCACATCCCA+TGG | 0.604072 | 4.1:+49347770 | MS.gene87640:CDS |
| TTCATGAGATGATATTTGAG+AGG | 0.604871 | 4.1:-49345266 | None:intergenic |
| TTGCAATACTTGAAGAACAT+AGG | 0.605147 | 4.1:-49348999 | None:intergenic |
| TGGCTGCTGCAGGTAACAGG+TGG | 0.615814 | 4.1:-49348870 | None:intergenic |
| TTCCAACTTAACAGGTACAA+AGG | 0.616787 | 4.1:+49348797 | MS.gene87640:intron |
| AAGTAAGGATCAGTTAGGAT+CGG | 0.620379 | 4.1:+49347444 | MS.gene87640:CDS |
| ATGAATATGATCATTGTCAG+TGG | 0.630171 | 4.1:-49345356 | None:intergenic |
| AGCTAGATCAGAAGAAACCA+TGG | 0.635656 | 4.1:+49347576 | MS.gene87640:CDS |
| CAAATGTCAAACGATGTAGC+TGG | 0.635892 | 4.1:+49349201 | MS.gene87640:CDS |
| AGGCAGAGACAACTTCATGA+TGG | 0.641320 | 4.1:-49345330 | None:intergenic |
| CAATACTTGAAGAACATAGG+AGG | 0.641383 | 4.1:-49348996 | None:intergenic |
| GAACAGATTACGATTACATG+CGG | 0.657215 | 4.1:+49346993 | MS.gene87640:CDS |
| AATCTCCAAATACTCCACAA+AGG | 0.692806 | 4.1:+49349070 | MS.gene87640:CDS |
| TGTTAATGTTGATAATGCTG+AGG | 0.695038 | 4.1:+49347522 | MS.gene87640:CDS |
| ATCGGCGATGAAAAGCATCG+AGG | 0.778036 | 4.1:+49347462 | MS.gene87640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAATACATGTAATT+TGG | - | chr4.1:49347836-49347855 | None:intergenic | 10.0% |
| !! | TAAGTAAAAAAAAACTATAA+TGG | - | chr4.1:49345441-49345460 | None:intergenic | 10.0% |
| !! | TTTAAAAACATTAAGTAATA+TGG | + | chr4.1:49346195-49346214 | MS.gene87640:intron | 10.0% |
| !!! | AAAAACAAATTTTTTTTACA+GGG | + | chr4.1:49348194-49348213 | MS.gene87640:intron | 10.0% |
| !!! | AACTATATTTTTCTTTTATT+TGG | + | chr4.1:49346374-49346393 | MS.gene87640:intron | 10.0% |
| !!! | TACATGTATTTTATTTATTA+TGG | + | chr4.1:49347839-49347858 | MS.gene87640:intron | 10.0% |
| !!! | TTGTTTTTTGAAATTATTAT+TGG | + | chr4.1:49346547-49346566 | MS.gene87640:intron | 10.0% |
| !!! | TTTTATAAGTATAATAATGT+AGG | + | chr4.1:49345999-49346018 | MS.gene87640:intron | 10.0% |
| !! | AAATATCATCACATAAAAAA+CGG | - | chr4.1:49346875-49346894 | None:intergenic | 15.0% |
| !! | GAAAACATAAATATTGTATA+TGG | - | chr4.1:49346066-49346085 | None:intergenic | 15.0% |
| !! | GAATTACATTTAAATATGAT+TGG | + | chr4.1:49347920-49347939 | MS.gene87640:intron | 15.0% |
| !! | GTAAGAGATAAAAAAAATAT+AGG | - | chr4.1:49345961-49345980 | None:intergenic | 15.0% |
| !! | TAATTAAAATACTTATGAAG+TGG | + | chr4.1:49348741-49348760 | MS.gene87640:intron | 15.0% |
| !! | TATGGTTGAAAAAATTAAAA+TGG | - | chr4.1:49345884-49345903 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr4.1:49348168-49348187 | MS.gene87640:intron | 15.0% |
| !!! | ATGCATATTTTGATTTTTAA+TGG | - | chr4.1:49348604-49348623 | None:intergenic | 15.0% |
| !!! | CAAAAACAAATTTTTTTTAC+AGG | + | chr4.1:49348193-49348212 | MS.gene87640:intron | 15.0% |
| !!! | CAAAAACAATTTTTTTTACA+GGG | - | chr4.1:49347995-49348014 | None:intergenic | 15.0% |
| !!! | CTGTAAAAAAAATTTGTTTT+TGG | - | chr4.1:49348195-49348214 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr4.1:49348167-49348186 | MS.gene87640:intron | 15.0% |
| !!! | TAGAATATTTTTATGTGATT+TGG | + | chr4.1:49346653-49346672 | MS.gene87640:intron | 15.0% |
| !!! | TTTTTTCCTTTCATTTTATT+GGG | + | chr4.1:49345729-49345748 | MS.gene87640:intron | 15.0% |
| !!! | TTTTTTTCCTTTCATTTTAT+TGG | + | chr4.1:49345728-49345747 | MS.gene87640:intron | 15.0% |
| !! | AAACAATAATACTTAAACAC+CGG | - | chr4.1:49346602-49346621 | None:intergenic | 20.0% |
| !! | AAGATAATGATTAAAGACTA+AGG | - | chr4.1:49348369-49348388 | None:intergenic | 20.0% |
| !! | AATAGAGTTAGATTTCTTTA+AGG | + | chr4.1:49345294-49345313 | MS.gene87640:CDS | 20.0% |
| !! | ACAATTTATAATACTTACCA+TGG | - | chr4.1:49347596-49347615 | None:intergenic | 20.0% |
| !! | ATAAATTCTTTCAGCAAAAA+AGG | - | chr4.1:49347664-49347683 | None:intergenic | 20.0% |
| !! | ATTGTATATGGTTGAAATAA+AGG | - | chr4.1:49346054-49346073 | None:intergenic | 20.0% |
| !! | GATAATCAAATGCAATTTAA+TGG | + | chr4.1:49346794-49346813 | MS.gene87640:intron | 20.0% |
| !! | TAATTTCATTAAATTCAGCT+AGG | - | chr4.1:49345694-49345713 | None:intergenic | 20.0% |
| !! | TATTTGATGGAAACTTTAAA+GGG | + | chr4.1:49347074-49347093 | MS.gene87640:CDS | 20.0% |
| !! | TCAATTAATAACGAGTTTAA+TGG | - | chr4.1:49346281-49346300 | None:intergenic | 20.0% |
| !! | TTAACTATCTGAACAATATT+TGG | - | chr4.1:49349249-49349268 | None:intergenic | 20.0% |
| !! | TTGAAATAAAGGGAAAAAAT+GGG | - | chr4.1:49346043-49346062 | None:intergenic | 20.0% |
| !! | TTGTATATGGTTGAAATAAA+GGG | - | chr4.1:49346053-49346072 | None:intergenic | 20.0% |
| !!! | AAATATGATTGGCTAAAATA+TGG | + | chr4.1:49347931-49347950 | MS.gene87640:intron | 20.0% |
| !!! | AAGAAACAAAAAATTTTGCA+GGG | - | chr4.1:49348020-49348039 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTAAGAAT+GGG | + | chr4.1:49347497-49347516 | MS.gene87640:CDS | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | chr4.1:49348122-49348141 | None:intergenic | 20.0% |
| !!! | CCAAAAACAATTTTTTTTAC+AGG | - | chr4.1:49347996-49348015 | None:intergenic | 20.0% |
| !!! | CCTGTAAAAAAAATTGTTTT+TGG | + | chr4.1:49347993-49348012 | MS.gene87640:intron | 20.0% |
| !!! | GTATTTTAATTAACCTATCT+TGG | - | chr4.1:49348733-49348752 | None:intergenic | 20.0% |
| !!! | TAAGAAACAAAAAATTTTGC+AGG | - | chr4.1:49348021-49348040 | None:intergenic | 20.0% |
| !!! | TAATCATATTGGCTAAAATA+TGG | - | chr4.1:49348258-49348277 | None:intergenic | 20.0% |
| !!! | TATAATGGACTATTGAATTA+TGG | - | chr4.1:49345426-49345445 | None:intergenic | 20.0% |
| !!! | TCAAAAACAAAAATTTTTGC+AGG | - | chr4.1:49348123-49348142 | None:intergenic | 20.0% |
| !!! | TTAAGTATTATTGTTTTGTC+CGG | + | chr4.1:49346606-49346625 | MS.gene87640:intron | 20.0% |
| !!! | TTTTTTCTTCTTCAATAGAT+TGG | + | chr4.1:49345559-49345578 | MS.gene87640:intron | 20.0% |
| ! | AAAAAGAGAATGAATAGTGA+TGG | + | chr4.1:49347217-49347236 | MS.gene87640:CDS | 25.0% |
| ! | ACTAACATATACATAAACAC+CGG | - | chr4.1:49346628-49346647 | None:intergenic | 25.0% |
| ! | ATGCAAATCATCACAAAAAT+GGG | - | chr4.1:49348058-49348077 | None:intergenic | 25.0% |
| ! | ATTAATAACGAGTTTAATGG+AGG | - | chr4.1:49346278-49346297 | None:intergenic | 25.0% |
| ! | CATATTGTTAAGGAAGTTAA+AGG | + | chr4.1:49347043-49347062 | MS.gene87640:CDS | 25.0% |
| ! | GTATTTGATGGAAACTTTAA+AGG | + | chr4.1:49347073-49347092 | MS.gene87640:CDS | 25.0% |
| ! | GTCATATTCATTCATTAACA+CGG | - | chr4.1:49346157-49346176 | None:intergenic | 25.0% |
| ! | GTTGAAATAAAGGGAAAAAA+TGG | - | chr4.1:49346044-49346063 | None:intergenic | 25.0% |
| ! | TAATACAATTCCAACTTAAC+AGG | + | chr4.1:49348789-49348808 | MS.gene87640:intron | 25.0% |
| ! | TAGAACACTATTAACATGTT+GGG | + | chr4.1:49346747-49346766 | MS.gene87640:intron | 25.0% |
| ! | TATGCAAATCATCACAAAAA+TGG | - | chr4.1:49348059-49348078 | None:intergenic | 25.0% |
| ! | TCAAAATATGCATTGAAGTT+TGG | + | chr4.1:49348611-49348630 | MS.gene87640:intron | 25.0% |
| ! | TCAACCATATATATGTTTCT+TGG | + | chr4.1:49345895-49345914 | MS.gene87640:intron | 25.0% |
| ! | TCAAGTGTAATTGTTGTAAA+TGG | - | chr4.1:49349042-49349061 | None:intergenic | 25.0% |
| ! | TGTATGTATCAGTATCATAT+GGG | - | chr4.1:49346511-49346530 | None:intergenic | 25.0% |
| ! | TGTTGTTGCATTAATCATAT+TGG | - | chr4.1:49348269-49348288 | None:intergenic | 25.0% |
| ! | TTAGAACACTATTAACATGT+TGG | + | chr4.1:49346746-49346765 | MS.gene87640:intron | 25.0% |
| ! | TTGTATGTATCAGTATCATA+TGG | - | chr4.1:49346512-49346531 | None:intergenic | 25.0% |
| !! | CATGTTTCTATTCTAGAAAA+TGG | + | chr4.1:49348522-49348541 | MS.gene87640:intron | 25.0% |
| !! | CTTTAACTTCCTTAACAATA+TGG | - | chr4.1:49347045-49347064 | None:intergenic | 25.0% |
| !! | TCTATTCTAGAAAATGGATT+TGG | + | chr4.1:49348528-49348547 | MS.gene87640:intron | 25.0% |
| !! | TGAACCTATTTTGTAGTTTT+CGG | + | chr4.1:49348095-49348114 | MS.gene87640:intron | 25.0% |
| !! | TTGATTGAATTGTTTTCAGA+TGG | + | chr4.1:49346898-49346917 | MS.gene87640:intron | 25.0% |
| !! | TTTTGACCCAATAAAATGAA+AGG | - | chr4.1:49345738-49345757 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTCTAAATTACG+TGG | - | chr4.1:49345643-49345662 | None:intergenic | 25.0% |
| !!! | AAAGGAAAAGAAGTATTTGA+TGG | + | chr4.1:49347061-49347080 | MS.gene87640:CDS | 25.0% |
| !!! | AAGGTTAAAGAAGTGTTTAA+TGG | + | chr4.1:49347286-49347305 | MS.gene87640:CDS | 25.0% |
| !!! | AATTTTGATTGGTTCTGATT+AGG | - | chr4.1:49349171-49349190 | None:intergenic | 25.0% |
| !!! | GAGTTAGTTTTAAGTAAGAA+TGG | + | chr4.1:49347496-49347515 | MS.gene87640:CDS | 25.0% |
| !!! | GTTAGTTTTAAGTAAGAATG+GGG | + | chr4.1:49347498-49347517 | MS.gene87640:CDS | 25.0% |
| !!! | TTATTGTTTTAGATCACTGA+TGG | + | chr4.1:49347686-49347705 | MS.gene87640:intron | 25.0% |
| AAATAAAGGGAAAAAATGGG+TGG | - | chr4.1:49346040-49346059 | None:intergenic | 30.0% | |
| AACAAATCTGCAGGAAAATT+TGG | - | chr4.1:49349291-49349310 | None:intergenic | 30.0% | |
| AAGAAAAAGAGAACTGAGAA+TGG | + | chr4.1:49347319-49347338 | MS.gene87640:CDS | 30.0% | |
| AATAAGGGTAAGGAAGTTAA+AGG | + | chr4.1:49347163-49347182 | MS.gene87640:CDS | 30.0% | |
| AATGAGAAAACCTAGAAGTA+AGG | + | chr4.1:49347429-49347448 | MS.gene87640:CDS | 30.0% | |
| AGAACACTATTAACATGTTG+GGG | + | chr4.1:49346748-49346767 | MS.gene87640:intron | 30.0% | |
| AGAAGACAAAAAAACCAAGA+GGG | + | chr4.1:49345651-49345670 | MS.gene87640:CDS | 30.0% | |
| ATAATGTGAAAGCAATCACT+AGG | - | chr4.1:49347882-49347901 | None:intergenic | 30.0% | |
| ATGAATATGATCATTGTCAG+TGG | - | chr4.1:49345359-49345378 | None:intergenic | 30.0% | |
| CAAATATCATCTCATGAAAC+AGG | + | chr4.1:49345271-49345290 | MS.gene87640:CDS | 30.0% | |
| CCAACAAAGACAAAATGTAT+TGG | - | chr4.1:49346775-49346794 | None:intergenic | 30.0% | |
| CCAACCAAGAAACATATATA+TGG | - | chr4.1:49345902-49345921 | None:intergenic | 30.0% | |
| CCAAGATCCATAAATTTCAT+TGG | - | chr4.1:49347133-49347152 | None:intergenic | 30.0% | |
| CCAATGAAATTTATGGATCT+TGG | + | chr4.1:49347130-49347149 | MS.gene87640:CDS | 30.0% | |
| CCATATATATGTTTCTTGGT+TGG | + | chr4.1:49345899-49345918 | MS.gene87640:intron | 30.0% | |
| GAAATTTATGGATCTTGGAT+TGG | + | chr4.1:49347135-49347154 | MS.gene87640:CDS | 30.0% | |
| GAAGTTTCTGATGGAAAATT+TGG | + | chr4.1:49347190-49347209 | MS.gene87640:CDS | 30.0% | |
| GATGCAATACCATATTGTTA+AGG | + | chr4.1:49347033-49347052 | MS.gene87640:CDS | 30.0% | |
| TAACAAACTCAAATCCGAAA+TGG | + | chr4.1:49348701-49348720 | MS.gene87640:intron | 30.0% | |
| TAATGTGAAAGCAATCACTA+GGG | - | chr4.1:49347881-49347900 | None:intergenic | 30.0% | |
| TAGAAGACAAAAAAACCAAG+AGG | + | chr4.1:49345650-49345669 | MS.gene87640:CDS | 30.0% | |
| TAGTAGTGATCAATCATTGA+TGG | + | chr4.1:49345606-49345625 | MS.gene87640:CDS | 30.0% | |
| TATCTTGGTATCTACCATTT+CGG | - | chr4.1:49348718-49348737 | None:intergenic | 30.0% | |
| TGATTGATCACTACTAGTAT+TGG | - | chr4.1:49345602-49345621 | None:intergenic | 30.0% | |
| TGCAAATCATCACAAAAATG+GGG | - | chr4.1:49348057-49348076 | None:intergenic | 30.0% | |
| TTAACACGGTAATATACGAT+TGG | - | chr4.1:49346143-49346162 | None:intergenic | 30.0% | |
| TTCATGAGATGATATTTGAG+AGG | - | chr4.1:49345269-49345288 | None:intergenic | 30.0% | |
| TTGCAATACTTGAAGAACAT+AGG | - | chr4.1:49349002-49349021 | None:intergenic | 30.0% | |
| ! | AGATGAAAGTTACCTGTTTT+CGG | - | chr4.1:49347805-49347824 | None:intergenic | 30.0% |
| ! | AGTTAATGATGACTTGGAAA+GGG | - | chr4.1:49345228-49345247 | None:intergenic | 30.0% |
| ! | ATCTGCTACTCAAATTTTTG+GGG | + | chr4.1:49346473-49346492 | MS.gene87640:intron | 30.0% |
| ! | ATTGTGTGTGCAAATTTTCT+TGG | + | chr4.1:49346239-49346258 | MS.gene87640:intron | 30.0% |
| ! | CAGAACCAATCAAAATTTTC+TGG | + | chr4.1:49349174-49349193 | MS.gene87640:CDS | 30.0% |
| ! | CATCACATAAAAAACGGATT+TGG | - | chr4.1:49346869-49346888 | None:intergenic | 30.0% |
| ! | CATCTGCTACTCAAATTTTT+GGG | + | chr4.1:49346472-49346491 | MS.gene87640:intron | 30.0% |
| ! | CCAATACATTTTGTCTTTGT+TGG | + | chr4.1:49346772-49346791 | MS.gene87640:intron | 30.0% |
| ! | TTGTGTGTGCAAATTTTCTT+GGG | + | chr4.1:49346240-49346259 | MS.gene87640:intron | 30.0% |
| !! | AAAAGGAAATTTGTTGATGC+TGG | + | chr4.1:49347250-49347269 | MS.gene87640:CDS | 30.0% |
| !! | AAAATTTGGATTAGCAGCAA+TGG | - | chr4.1:49349277-49349296 | None:intergenic | 30.0% |
| !! | CGATAATAAGCTTTAGAACA+CGG | - | chr4.1:49347755-49347774 | None:intergenic | 30.0% |
| !! | GATAATAAGCTTTAGAACAC+GGG | - | chr4.1:49347754-49347773 | None:intergenic | 30.0% |
| !! | GTAGTCCAGAAAATTTTGAT+TGG | - | chr4.1:49349182-49349201 | None:intergenic | 30.0% |
| !! | TGTTAATGTTGATAATGCTG+AGG | + | chr4.1:49347522-49347541 | MS.gene87640:CDS | 30.0% |
| !! | TTGAGAGGTTTGATTTTCAT+TGG | - | chr4.1:49345254-49345273 | None:intergenic | 30.0% |
| !!! | AGTTGTTTTTGCCATTTCTT+TGG | - | chr4.1:49348893-49348912 | None:intergenic | 30.0% |
| !!! | GTCAGTTTTATTGTTTTGTC+CGG | + | chr4.1:49346580-49346599 | MS.gene87640:intron | 30.0% |
| !!! | TTGTTTTTTAAAACAGTCCC+TGG | - | chr4.1:49348157-49348176 | None:intergenic | 30.0% |
| AAAAAGAGAACTGAGAATGG+TGG | + | chr4.1:49347097-49347116 | MS.gene87640:CDS | 35.0% | |
| AAAGGACAAGAAGTTTCTGA+TGG | + | chr4.1:49347181-49347200 | MS.gene87640:CDS | 35.0% | |
| AAGTAAGGATCAGTTAGGAT+CGG | + | chr4.1:49347444-49347463 | MS.gene87640:CDS | 35.0% | |
| AATAACGAGTTTAATGGAGG+TGG | - | chr4.1:49346275-49346294 | None:intergenic | 35.0% | |
| AATCTCCAAATACTCCACAA+AGG | + | chr4.1:49349070-49349089 | MS.gene87640:CDS | 35.0% | |
| ACGTGCGAATAAAACATTTC+AGG | - | chr4.1:49346838-49346857 | None:intergenic | 35.0% | |
| ACTCACATAGACAACAATGT+GGG | + | chr4.1:49345843-49345862 | MS.gene87640:intron | 35.0% | |
| ATAACGAGTTTAATGGAGGT+GGG | - | chr4.1:49346274-49346293 | None:intergenic | 35.0% | |
| ATGGTTTCTGTATCGAAGAT+TGG | - | chr4.1:49348642-49348661 | None:intergenic | 35.0% | |
| ATTGGCTAGTAATAAGGGTA+AGG | + | chr4.1:49347153-49347172 | MS.gene87640:CDS | 35.0% | |
| ATTGGGGCCAATGAAATTTA+TGG | + | chr4.1:49347123-49347142 | MS.gene87640:CDS | 35.0% | |
| CAATACTTGAAGAACATAGG+AGG | - | chr4.1:49348999-49349018 | None:intergenic | 35.0% | |
| CGAGATTGAACGAAAGAAAA+TGG | + | chr4.1:49346934-49346953 | MS.gene87640:CDS | 35.0% | |
| CGTGCGAATAAAACATTTCA+GGG | - | chr4.1:49346837-49346856 | None:intergenic | 35.0% | |
| GAAATGGTAGATACCAAGAT+AGG | + | chr4.1:49348717-49348736 | MS.gene87640:intron | 35.0% | |
| GAACAGATTACGATTACATG+CGG | + | chr4.1:49346993-49347012 | MS.gene87640:CDS | 35.0% | |
| GCATCAACATCAAGTAATGA+TGG | + | chr4.1:49348940-49348959 | MS.gene87640:CDS | 35.0% | |
| GCTTCTCTTACTTCCATTAT+TGG | + | chr4.1:49349312-49349331 | MS.gene87640:CDS | 35.0% | |
| GTACTTACTATGTGAATCCA+TGG | + | chr4.1:49348666-49348685 | MS.gene87640:intron | 35.0% | |
| GTATTGCCAATAGTTGTGAA+GGG | - | chr4.1:49349227-49349246 | None:intergenic | 35.0% | |
| TAAAATGGAAATGAGAGCCT+TGG | - | chr4.1:49345869-49345888 | None:intergenic | 35.0% | |
| TAATAACATTACCTCCCTCT+TGG | - | chr4.1:49345668-49345687 | None:intergenic | 35.0% | |
| TACTCACATAGACAACAATG+TGG | + | chr4.1:49345842-49345861 | MS.gene87640:intron | 35.0% | |
| TACTGATACACCATCTTTGT+TGG | + | chr4.1:49345378-49345397 | MS.gene87640:CDS | 35.0% | |
| TCACATAGTAAGTACATCGA+TGG | - | chr4.1:49348661-49348680 | None:intergenic | 35.0% | |
| TCGTTAGATATGAAGATGTC+CGG | + | chr4.1:49345787-49345806 | MS.gene87640:intron | 35.0% | |
| TGATATGCATTGAACGATGT+TGG | + | chr4.1:49348455-49348474 | MS.gene87640:intron | 35.0% | |
| TTCCAACTTAACAGGTACAA+AGG | + | chr4.1:49348797-49348816 | MS.gene87640:intron | 35.0% | |
| TTGATGTAGCAGCACATTAT+TGG | + | chr4.1:49346297-49346316 | MS.gene87640:intron | 35.0% | |
| TTTCAGATGGCTATTCTTCA+AGG | + | chr4.1:49346911-49346930 | MS.gene87640:intron | 35.0% | |
| ! | AAAGGAGTTTGAAACTGATC+TGG | - | chr4.1:49349099-49349118 | None:intergenic | 35.0% |
| ! | AAGGAGTTTGAAACTGATCT+GGG | - | chr4.1:49349098-49349117 | None:intergenic | 35.0% |
| ! | GAGTTAATGATGACTTGGAA+AGG | - | chr4.1:49345229-49345248 | None:intergenic | 35.0% |
| ! | GATCAATCATTGATGGATGA+TGG | + | chr4.1:49345613-49345632 | MS.gene87640:CDS | 35.0% |
| ! | GCATCTGCTACTCAAATTTT+TGG | + | chr4.1:49346471-49346490 | MS.gene87640:intron | 35.0% |
| ! | GGTTCTGATTAGGTATTTGA+GGG | - | chr4.1:49349161-49349180 | None:intergenic | 35.0% |
| ! | GTATTGGTAGTAACAGGATT+GGG | - | chr4.1:49345586-49345605 | None:intergenic | 35.0% |
| ! | GTGATGGAGAATTAGTGAAA+AGG | + | chr4.1:49347233-49347252 | MS.gene87640:CDS | 35.0% |
| ! | TGCTGGATTGGATACTAATA+AGG | + | chr4.1:49347267-49347286 | MS.gene87640:CDS | 35.0% |
| ! | TTTAATGGACATTGACGTGT+TGG | - | chr4.1:49348589-49348608 | None:intergenic | 35.0% |
| ! | TTTGTGATGATTTGCATACG+TGG | + | chr4.1:49348061-49348080 | MS.gene87640:intron | 35.0% |
| !! | AGAGGTTTGATTTTCATTGG+AGG | - | chr4.1:49345251-49345270 | None:intergenic | 35.0% |
| !! | AGTATTGGTAGTAACAGGAT+TGG | - | chr4.1:49345587-49345606 | None:intergenic | 35.0% |
| !! | CTACTAGTATTGGTAGTAAC+AGG | - | chr4.1:49345592-49345611 | None:intergenic | 35.0% |
| !! | CTTGGATTGGCTAGTAATAA+GGG | + | chr4.1:49347148-49347167 | MS.gene87640:CDS | 35.0% |
| !! | GAAATTTGTTGATGCTGGAT+TGG | + | chr4.1:49347255-49347274 | MS.gene87640:CDS | 35.0% |
| !! | TCTTGGATTGGCTAGTAATA+AGG | + | chr4.1:49347147-49347166 | MS.gene87640:CDS | 35.0% |
| !! | TGGTTCTGATTAGGTATTTG+AGG | - | chr4.1:49349162-49349181 | None:intergenic | 35.0% |
| !! | TTTTGAAAATAGTCCCTCCA+GGG | + | chr4.1:49348137-49348156 | MS.gene87640:intron | 35.0% |
| !! | TTTTTGAAAATAGTCCCTCC+AGG | + | chr4.1:49348136-49348155 | MS.gene87640:intron | 35.0% |
| !!! | TTTTTAAAACAGTCCCTGGA+GGG | - | chr4.1:49348153-49348172 | None:intergenic | 35.0% |
| !!! | TTTTTTAAAACAGTCCCTGG+AGG | - | chr4.1:49348154-49348173 | None:intergenic | 35.0% |
| AGACAAAAAAACCAAGAGGG+AGG | + | chr4.1:49345654-49345673 | MS.gene87640:CDS | 40.0% | |
| AGAGAAGCTAACAAATCTGC+AGG | - | chr4.1:49349300-49349319 | None:intergenic | 40.0% | |
| AGCTAGATCAGAAGAAACCA+TGG | + | chr4.1:49347576-49347595 | MS.gene87640:CDS | 40.0% | |
| AGCTTGAGTTCCAACAAAGA+TGG | - | chr4.1:49345391-49345410 | None:intergenic | 40.0% | |
| CAAAACGAGGCATACTTGTA+GGG | - | chr4.1:49347964-49347983 | None:intergenic | 40.0% | |
| CAAAACGAGGCATATTTGCA+GGG | + | chr4.1:49348225-49348244 | MS.gene87640:intron | 40.0% | |
| CAATGTGTGACACTCATACA+AGG | + | chr4.1:49345816-49345835 | MS.gene87640:intron | 40.0% | |
| CACCTTTGTACCTGTTAAGT+TGG | - | chr4.1:49348802-49348821 | None:intergenic | 40.0% | |
| CATGTTTGTGACTTCGATCT+AGG | - | chr4.1:49348334-49348353 | None:intergenic | 40.0% | |
| CCTAACTGATCCTTACTTCT+AGG | - | chr4.1:49347442-49347461 | None:intergenic | 40.0% | |
| CCTAGAAGTAAGGATCAGTT+AGG | + | chr4.1:49347439-49347458 | MS.gene87640:CDS | 40.0% | |
| GCAGAACTCTGAGTGATTAA+AGG | - | chr4.1:49349117-49349136 | None:intergenic | 40.0% | |
| GGGAAAAAGAGAACTGAGAA+TGG | + | chr4.1:49347094-49347113 | MS.gene87640:CDS | 40.0% | |
| GGGACCGAAAACTACAAAAT+AGG | - | chr4.1:49348102-49348121 | None:intergenic | 40.0% | |
| GGTATTGCCAATAGTTGTGA+AGG | - | chr4.1:49349228-49349247 | None:intergenic | 40.0% | |
| GTATCATATGGGTGCAATGA+CGG | - | chr4.1:49346500-49346519 | None:intergenic | 40.0% | |
| GTATGAGTGTCACACATTGA+CGG | - | chr4.1:49345815-49345834 | None:intergenic | 40.0% | |
| TATGAGTGTCACACATTGAC+GGG | - | chr4.1:49345814-49345833 | None:intergenic | 40.0% | |
| TCATCACAAAAATGGGGTCA+AGG | - | chr4.1:49348051-49348070 | None:intergenic | 40.0% | |
| TGCGGACATAAATTGTCGTA+AGG | + | chr4.1:49347725-49347744 | MS.gene87640:intron | 40.0% | |
| TGGAGGAGTTAATGATGACT+TGG | - | chr4.1:49345234-49345253 | None:intergenic | 40.0% | |
| TGTTACAGTCAGCAAATCCA+TGG | - | chr4.1:49348686-49348705 | None:intergenic | 40.0% | |
| TTGAGGGATTATAGAAGCTG+AGG | - | chr4.1:49349145-49349164 | None:intergenic | 40.0% | |
| ! | AACTGAGAATGGTGGAGTAT+TGG | + | chr4.1:49347105-49347124 | MS.gene87640:CDS | 40.0% |
| ! | ACTGAGAATGGTGGAGTATT+GGG | + | chr4.1:49347106-49347125 | MS.gene87640:CDS | 40.0% |
| ! | AGATCACTGATGGATGTCAA+TGG | + | chr4.1:49347696-49347715 | MS.gene87640:intron | 40.0% |
| ! | CTGTGTAAATGCATGGATTG+CGG | - | chr4.1:49348566-49348585 | None:intergenic | 40.0% |
| ! | TCTAGGTTTTCTCATTGACG+AGG | - | chr4.1:49347425-49347444 | None:intergenic | 40.0% |
| !! | ATGTTTTATTCGCACGTGAG+AGG | + | chr4.1:49346841-49346860 | MS.gene87640:intron | 40.0% |
| AACTGATCTGGGTTCCTTTG+TGG | - | chr4.1:49349087-49349106 | None:intergenic | 45.0% | |
| AGGCAGAGACAACTTCATGA+TGG | - | chr4.1:49345333-49345352 | None:intergenic | 45.0% | |
| ATAGACAACAATGTGGGCCA+AGG | + | chr4.1:49345849-49345868 | MS.gene87640:intron | 45.0% | |
| ATGATCATTGTCAGTGGCAG+AGG | - | chr4.1:49345353-49345372 | None:intergenic | 45.0% | |
| CAGGGACTAAAACCAAAACG+AGG | - | chr4.1:49347977-49347996 | None:intergenic | 45.0% | |
| CCAAAACGAGGCATACTTGT+AGG | - | chr4.1:49347965-49347984 | None:intergenic | 45.0% | |
| CCAAAACGAGGCATATTTGC+AGG | + | chr4.1:49348224-49348243 | MS.gene87640:intron | 45.0% | |
| GGATGTCAATGGAGAAAGTG+CGG | + | chr4.1:49347707-49347726 | MS.gene87640:intron | 45.0% | |
| GTTGGTGCAAAGGCAATGTA+GGG | + | chr4.1:49347348-49347367 | MS.gene87640:CDS | 45.0% | |
| GTTGTAAATGGAGCAGAAGC+TGG | - | chr4.1:49349030-49349049 | None:intergenic | 45.0% | |
| TACTAATGCTGAGACTGCGA+TGG | + | chr4.1:49347384-49347403 | MS.gene87640:CDS | 45.0% | |
| ! | AAAATGGGTGGCAGCTCTAA+TGG | - | chr4.1:49346028-49346047 | None:intergenic | 45.0% |
| ! | AACTGAGAATGGTGGAGAGT+TGG | + | chr4.1:49347330-49347349 | MS.gene87640:CDS | 45.0% |
| ! | AGTTGGTGCAAAGGCAATGT+AGG | + | chr4.1:49347347-49347366 | MS.gene87640:CDS | 45.0% |
| ! | CCTACAAGTATGCCTCGTTT+TGG | + | chr4.1:49347962-49347981 | MS.gene87640:intron | 45.0% |
| ! | CCTGCAAATATGCCTCGTTT+TGG | - | chr4.1:49348227-49348246 | None:intergenic | 45.0% |
| ! | GGGTTCCTTTGTGGAGTATT+TGG | - | chr4.1:49349078-49349097 | None:intergenic | 45.0% |
| ! | TTTTCGGACTGAGCAACCAT+GGG | - | chr4.1:49347789-49347808 | None:intergenic | 45.0% |
| !! | AAGAAGCATCTTTGCAGCTG+TGG | - | chr4.1:49348917-49348936 | None:intergenic | 45.0% |
| !! | CTGAGAATGGTGGAGTATTG+GGG | + | chr4.1:49347107-49347126 | MS.gene87640:CDS | 45.0% |
| !! | GTGTTGGCTGTGTAAATGCA+TGG | - | chr4.1:49348573-49348592 | None:intergenic | 45.0% |
| !! | ATTATACTTATAAAAAATAT+AGG | - | chr4.1:49345994-49346013 | None:intergenic | 5.0% |
| !!! | TGAATAAATAAATTTAATTT+AGG | - | chr4.1:49346437-49346456 | None:intergenic | 5.0% |
| ACCTGCAGCAGCCAAAGAAA+TGG | + | chr4.1:49348879-49348898 | MS.gene87640:CDS | 50.0% | |
| AGCTGGCCCTTCACAACTAT+TGG | + | chr4.1:49349218-49349237 | MS.gene87640:CDS | 50.0% | |
| CAGGGACTCAAACCAAAACG+AGG | + | chr4.1:49348212-49348231 | MS.gene87640:intron | 50.0% | |
| TATCGCTACAGCACATCCCA+TGG | + | chr4.1:49347770-49347789 | MS.gene87640:CDS | 50.0% | |
| TGGTTGCTCAGTCCGAAAAC+AGG | + | chr4.1:49347790-49347809 | MS.gene87640:CDS | 50.0% | |
| ! | GTTTTCGGACTGAGCAACCA+TGG | - | chr4.1:49347790-49347809 | None:intergenic | 50.0% |
| !! | AAGCATCGAGGTTGCTTCGA+AGG | + | chr4.1:49347474-49347493 | MS.gene87640:CDS | 50.0% |
| !! | ATCGGCGATGAAAAGCATCG+AGG | + | chr4.1:49347462-49347481 | MS.gene87640:CDS | 50.0% |
| !! | ATGGTGGAGAGTTGGTGCAA+AGG | + | chr4.1:49347338-49347357 | MS.gene87640:CDS | 50.0% |
| CTGCAGGTAACAGGTGGTTG+TGG | - | chr4.1:49348867-49348886 | None:intergenic | 55.0% | |
| CTTTGGCTGCTGCAGGTAAC+AGG | - | chr4.1:49348876-49348895 | None:intergenic | 55.0% | |
| GCCATTTCTTTGGCTGCTGC+AGG | - | chr4.1:49348883-49348902 | None:intergenic | 55.0% | |
| ! | GTGTCACACATTGACGGGTC+CGG | - | chr4.1:49345809-49345828 | None:intergenic | 55.0% |
| TGGCTGCTGCAGGTAACAGG+TGG | - | chr4.1:49348873-49348892 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 49345202 | 49349344 | 49345202 | ID=MS.gene87640 |
| chr4.1 | mRNA | 49345202 | 49349344 | 49345202 | ID=MS.gene87640.t1;Parent=MS.gene87640 |
| chr4.1 | exon | 49345202 | 49345414 | 49345202 | ID=MS.gene87640.t1.exon1;Parent=MS.gene87640.t1 |
| chr4.1 | CDS | 49345202 | 49345414 | 49345202 | ID=cds.MS.gene87640.t1;Parent=MS.gene87640.t1 |
| chr4.1 | exon | 49345577 | 49345675 | 49345577 | ID=MS.gene87640.t1.exon2;Parent=MS.gene87640.t1 |
| chr4.1 | CDS | 49345577 | 49345675 | 49345577 | ID=cds.MS.gene87640.t1;Parent=MS.gene87640.t1 |
| chr4.1 | exon | 49346917 | 49347601 | 49346917 | ID=MS.gene87640.t1.exon3;Parent=MS.gene87640.t1 |
| chr4.1 | CDS | 49346917 | 49347601 | 49346917 | ID=cds.MS.gene87640.t1;Parent=MS.gene87640.t1 |
| chr4.1 | exon | 49347747 | 49347811 | 49347747 | ID=MS.gene87640.t1.exon4;Parent=MS.gene87640.t1 |
| chr4.1 | CDS | 49347747 | 49347811 | 49347747 | ID=cds.MS.gene87640.t1;Parent=MS.gene87640.t1 |
| chr4.1 | exon | 49348811 | 49349344 | 49348811 | ID=MS.gene87640.t1.exon5;Parent=MS.gene87640.t1 |
| chr4.1 | CDS | 49348811 | 49349344 | 49348811 | ID=cds.MS.gene87640.t1;Parent=MS.gene87640.t1 |
| Gene Sequence |
| Protein sequence |
