AlfalfaGEDB | MS.gene87660

M. sativa cultivar XinJiangDaYe / MS.gene87660

KEGG: K10875
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87660.t1	XP_003600991.1	96.1	1267	50	0	1	1267	1	1267	0.00E+00	2385.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87660.t1	F4K493	48.7	1301	585	27	5	1266	3	1260	0.0e+00	1079.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87660.t1	G7J2D7	96.1	1267	50	0	1	1267	1	1267	0.0e+00	2385.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene87660.t1	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87660.t1	MTR_3g071860	96.369	1267	46	0	1	1267	1	1267	0.0	2528
MS.gene87660.t1	MTR_7g026650	79.766	855	153	8	413	1266	317	1152	0.0	1361
MS.gene87660.t1	MTR_7g026650	72.611	314	79	2	21	333	11	318	2.09e-142	463
MS.gene87660.t1	MTR_5g083300	55.564	1339	479	26	5	1266	41	1340	0.0	1349
MS.gene87660.t1	MTR_5g083300	55.564	1339	479	26	5	1266	4	1303	0.0	1348
MS.gene87660.t1	MTR_1g081750	72.418	881	213	11	388	1266	263	1115	0.0	1242
MS.gene87660.t1	MTR_1g081750	68.127	251	76	2	1	251	1	247	6.06e-100	345
MS.gene87660.t1	MTR_7g026620	54.994	771	185	14	400	1170	36	644	0.0	736
MS.gene87660.t1	MTR_7g450820	35.221	724	396	18	550	1247	537	1213	2.42e-111	379
MS.gene87660.t1	MTR_7g450860	33.912	749	423	18	529	1253	557	1257	4.89e-111	379

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87660.t1	AT5G20420	61.392	790	279	12	488	1266	486	1260	0.0	949
MS.gene87660.t1	AT5G20420	39.877	326	167	10	5	321	3	308	9.37e-57	216
MS.gene87660.t1	AT3G42670	58.571	840	313	14	443	1266	434	1254	0.0	949
MS.gene87660.t1	AT3G42670	39.333	300	161	7	5	302	3	283	8.60e-52	200
MS.gene87660.t1	AT3G42670	58.571	840	313	14	443	1266	434	1254	0.0	949
MS.gene87660.t1	AT3G42670	39.333	300	161	7	5	302	3	283	8.60e-52	200
MS.gene87660.t1	AT3G42670	58.571	840	313	14	443	1266	434	1254	0.0	949
MS.gene87660.t1	AT3G42670	39.333	300	161	7	5	302	3	283	8.60e-52	200
MS.gene87660.t1	AT3G42670	58.432	842	313	14	443	1266	434	1256	0.0	948
MS.gene87660.t1	AT3G42670	39.333	300	161	7	5	302	3	283	9.09e-52	200

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Find 181 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGATTCCTGTGC+CGG	0.511195	3.1:-58680666	MS.gene87660:CDS
AAAGAGATTATGGTACTAAC+AGG	0.411733	3.1:-58679612	MS.gene87660:CDS
AAAGCATTGAGAGAAAGCCC+TGG	0.610887	3.1:-58680410	MS.gene87660:CDS
AAATTGACATGAACATTGAT+CGG	0.547067	3.1:+58683222	None:intergenic
AAATTTGAAGATCAAAGCAG+CGG	0.654526	3.1:-58679552	MS.gene87660:CDS
AACAAGCATGTTGGAGAAAA+AGG	0.240380	3.1:-58682009	MS.gene87660:CDS
AACACAACCACCACTTGAGT+TGG	0.495316	3.1:+58680826	None:intergenic
AACCTTGATTTAGTGCTTCT+AGG	0.271299	3.1:+58680359	None:intergenic
AACTCTATTAAGAATCTCAC+AGG	0.523720	3.1:+58679666	None:intergenic
AAGAAAAGAATTGATGAGAA+AGG	0.461369	3.1:+58680775	None:intergenic

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGATTATGGTACTAAC+AGG	-	chr3.1:58684498-58684517	MS.gene87660:intron	30.0%
AAATTTGAAGATCAAAGCAG+CGG	-	chr3.1:58684558-58684577	MS.gene87660:intron	30.0%
AACTCTATTAAGAATCTCAC+AGG	+	chr3.1:58684447-58684466	None:intergenic	30.0%
AAGCTATTAATGTGAACACA+AGG	-	chr3.1:58681596-58681615	MS.gene87660:intron	30.0%
AAGTATTATGTTGAAGCCTT+TGG	+	chr3.1:58681012-58681031	None:intergenic	30.0%
ACAACATATCCAACAAAATG+AGG	+	chr3.1:58682725-58682744	None:intergenic	30.0%
ACAAGGAACAAAAATTCTGA+CGG	-	chr3.1:58681613-58681632	MS.gene87660:intron	30.0%
ACAGAAACTTCAGAAGAAAA+TGG	-	chr3.1:58684182-58684201	MS.gene87660:intron	30.0%
ACATCAAGTTATCTTCTTGA+TGG	-	chr3.1:58682210-58682229	MS.gene87660:CDS	30.0%
ACTATCTATTATTTCCTTGC+AGG	+	chr3.1:58682016-58682035	None:intergenic	30.0%

Showing 1 to 10 of 335 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	58679170	58684962	58679170	ID=MS.gene87660
chr3.1	mRNA	58679170	58684962	58679170	ID=MS.gene87660.t1;Parent=MS.gene87660
chr3.1	exon	58684905	58684962	58684905	ID=MS.gene87660.t1.exon1;Parent=MS.gene87660.t1
chr3.1	CDS	58684905	58684962	58684905	ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1	exon	58683809	58684053	58683809	ID=MS.gene87660.t1.exon2;Parent=MS.gene87660.t1
chr3.1	CDS	58683809	58684053	58683809	ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1	exon	58681893	58683293	58681893	ID=MS.gene87660.t1.exon3;Parent=MS.gene87660.t1
chr3.1	CDS	58681893	58683293	58681893	ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1	exon	58681459	58681605	58681459	ID=MS.gene87660.t1.exon4;Parent=MS.gene87660.t1
chr3.1	CDS	58681459	58681605	58681459	ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1	exon	58679170	58681122	58679170	ID=MS.gene87660.t1.exon5;Parent=MS.gene87660.t1
chr3.1	CDS	58679170	58681122	58679170	ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1

Gene Sequence

>MS.gene87660

ATGGCGCCCATAAAAAGGCATTTGCATCAATGGAAGCATCCATTCGATGCTAATTATCGTAAGCTTTTTTTTTTCCTTAATTTTATTACTATATATGCATGAGAAAGAAATAAAAAGAATAGCAAAATATGAAAAATCATCAATGGATTACAACATTGATTTTGTGATATTGAAAAGATTGTTATTCATTACCATGATGAATGCAACAAATGATATAGACTTGAATCCTCTTCAACCGGCTATAGATTGTTAGATTAAGAGAGATGCAGCAGACTGCTTATAAAGTTAGCTGCAAAGGATTCACTTTGTATTTGTACACTTGATAAATTTGTTGGTTTTGTACATTATTAACCAAATTGTGAATTAACAAAGCTCTTCGAATCGTTAATAAGTTACTTAATCTTGATTATTAACATTTAAAATCATAGTCAATACAGTAGATTACATGATTAATGAATTATTCAATCTTGATTTAGTTAAACGTTTGTTGGTTTCCCTTCTAGGTTTGGTTTATGTCTCCCACATTTTTGTTATTTTTCCTTTTACTTGGAGATGATTTTTGTTTTGCACACATAATTGAGATGTCAGTAATTCATAATTATATCTCTTTGCAACCTTAATTTTTCTTAGAAAAACTATCCAATCTTGATACTTATTGTATATTCATTAACAAAACTCAACTAATAAGACATAAACCATGATTTTGAATGTGGCATGCATGTACTTTCAGTTCTGATCAATGTAATTGAAAATTAATACATTTTAATTACAGGACAAACGACTATTTATTTTCTGTTGTGGCCTTGCAGAAACTAGTTAGAGCAAATTTCTATAACTTCATGTTCTCATTCATTAATATCTATAGATTTTTTACTATAGTTGCTTCCCCTAATTCTTGTTTCAAAACAGCATTTGAAGCAGTATTGAATGGATCATGGCAACCTGTGGAACTCTTAAAAATAGAGTCAGGAAAAACTACCTTACGTTTCATTGATACTGAACAAATTCAAAGCACTTTGTCATCAGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCCATTTACGTCTATTCCAGTAAGTTCAAACTTTTTATTAAACTTCATTTCTTAGTAAACTGGTGTTTATATGCATTTATTTGTTGATCTTTAATTTCTTGATAAAAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATACGCAGCCTTACCCTGTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACTAGTTGCGCCAAGTTTACCCGTGACCTTTCTTGATATTATTTTTTTTATCTGAACCCTCCGATTTGTAAGGAACTGGCCCCATTAATCCAGAGTTCACCCAGGAGCGACGTTAAGTCTAGTCAATGATTGTTCTAGCCATAATTTGAACTTGGATTTTCCTGAATGATTTGTCCTTAACTGAATTAACCATTTGAAATAAATCACATTTGATACATGTTTAATTTCTTGATGTTGACTTACCAAACACTTGGCTTGATATTTATCTCTTTGTAAATTGTAGGTGTGGATTGATGCAAGAATAAATTCTATACATAGACAGCCTCACAAATCCGATCAATGTTCATGTCAATTTTATGTTAACTTATACGATGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGAAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGATACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTCGTTGGGAAATTTTCATCTGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGAAGGTTTCATTCCATATAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGGAATGATACTGATATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAGCTTAAAAAAGGAATCACTAGTACCTATTGTTTCTCAATTTGATGTATTTTATGATTATGATGGAGAAGAAGATGAAGAGCCACCAAAGCCATCACATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAACGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTTGGTAATTTTCGAACGTGTCCCTACAAGAGAACAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGGATGGTGGTAAGAGGGATCAAAAGGTTAATAAGCTAAATCATTGCAAAGCTATTAATGTGAACACAAGGAACAAAAATTCTGACGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTTGTGCAAAGAAGAATGGTGCTGATGTGTTGAATTTGGAGTACGGCAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAAATTATAATAGTTTCTTTAAAGAGAAGATAAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTTGAAACCAAATGGGAAGGGATACATTTCAAAAAAGAAGCTCCAACAGAAAATTTTCATTCGAGTTATTCGTCTAACAGAAGTCATGTTCATGAAGAACTAGATCATAAAGGCGGTAGAACATTCAATGCTGATGCCTGCAAGGAAATAATAGATAGTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCTACTGTAAATGAGAAGTGGAAGGAAACAAGCATGTTGGAGAAAAAGGAAGAAGAAAAAGCATCGAAAAGCGATGACGAGGAAGAAAATCCTGATGATTTGGATGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACTGCGGTGTGTGTGACAATTTTTAGTATATATTTTTAATATTTTCTTGAGTTTATTTTTGTTACACCGTTAGTGTAAAAAGTTTTAAACTGTCGGCAAATCACAACCAATTGTATATGTGACTTTAAAAGTAACTATGATTGAAGTCAAACATTTTTAATGATGTGACAATTATGATTGGCTGACAGCGTACAAAGTCTTTACACTAGCAATGTATATGAATTAAATTCTTTGTTTTTTTGTTTTTATCTTCTTTTATGAGGCTAAAGACTGATTCAGTTTAAATATAGCAGGGTTCAACTGCAGAGTTTGTAGCTGATACCAAGAAAGAATCCAAGGATAGTTGTGAACATGATTATAGATTGGATGAAGAAATTGGAATATACTGTCTTCGATGTGGATTTGTGAAAACTGCAATACGAGACATTTCTGAGCCATTTGTAAGTCAAATAAAAAAGCATAACAAAAGTCTACATGTAATTTTAGTCCCTCATTTTGTTGGATATGTTGTCTACTGCAATGTTTAAATATCAGCAATAGCGTAGGAAATTTGAACAAATAGCTATTGTTCTGCAATAAGCTATTTAGTACAAAATGCTGACAAATAGCGGCACTGTATGTTGCATAGCACAATTTGAACAAACTTCTATTTTTTCGTGATTTACGATTGACAACACTCGTCTGTTAACTGTATTCTCTTTATTTGGTTAGATATTTTGTCTATTGCTTGCTCCGGTATGAATCTAACTGATAACTTAATTTATATATAATGATAGGTGGAATGCCCAAAAAGGTACAAAGAGGAGAAACAGTGCAGTGAAGAAAATAAGGAACATAAATCAGAGCCAAAAGTTGATGAAGATTATAATAATGATATGTTCTCGACTCATGCTACTGATCCTGATGAACCATTGATTAATGAAATCGACAACGTTTGGGAATTGATTCCTGAACTTGAAGAAAAGATGCATGAACACCAGAAAAAAGCTTTTGAATTTCTTTGGCATAACATTGCTGGCTCTATGGAACCATCACTCATGGAAGAAAAATCCAACTCAAGTGGTGGTTGTGTTATATCACATGCCCCTGGAGCAGGAAAAACCTTTCTCATCAATTCTTTTCTTGTCAGTTACTTGAAGTTATTTCCAAGGAAACGACCTCTGGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCTGTGCCGGTTTATCTTATCCATGGCCGTCGAACCTCCCCAGGTTCAAGTTCGACGACAGCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTTGGCAAGATACAGAAGTGGCACTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACAAAATTCGCACACAGAAAATACATGGCCAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTACTCTCCGGCACATTGTTTCAGAACAATTTTGGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTATTCATGAAGTTCTACAAGAGTTAGATTCTAAATACAGAAGGAAAGGCGGAAAAGTTGCGAAGAAAGAACGTCATTTGCTTGAGGCACGCGCAAGAAAATTCTTCTTGAACAACATTGAAAAGAAAATTAACTCAGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCGGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATATATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACCCTCGGATCAATACATCCATGGTTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAACAAGCAAATTTGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTCTGAGCCTAATCTCACGAGTAATGAAAAATGAAAAGGTTCTTATCTTTTGTCACAATCTTGCACCTGTGAGATTCTTAATAGAGTTATTTGAGAAATATTTTCAGTGGCAAAATGGCAAAGAGATTATGGTACTAACAGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGCCAGCAGAAAATGGTTTATGTGTATCAGTTACTGACGACCGGGTCGATGGAAGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA

Protein sequence

>MS.gene87660.t1

MAPIKRHLHQWKHPFDANYPFEAVLNGSWQPVELLKIESGKTTLRFIDTEQIQSTLSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDPFTSIPVWIDARINSIHRQPHKSDQCSCQFYVNLYDDQGSLGTEVKTLNKEVNAIEIDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFSSDLSWFVITSFLKKVSFHIRSVQNKIVYQVMGNDTDIISPWLINVVNFSLKKESLVPIVSQFDVFYDYDGEEDEEPPKPSHEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRTTYMIEDENSSSDSEEDGGKRDQKVNKLNHCKAINVNTRNKNSDGDGKFKVHKTDDISSKYHYLTNYISCAKKNGADVLNLEYGNEPTTISSDEEVDGNVTLRNYNSFFKEKIKRKRLHVVDDMDFETKWEGIHFKKEAPTENFHSSYSSNRSHVHEELDHKGGRTFNADACKEIIDSYMKNFDSLPTEEEPTVNEKWKETSMLEKKEEEKASKSDDEEENPDDLDALWEEMNTALTSSYLLDGTAGSTAEFVADTKKESKDSCEHDYRLDEEIGIYCLRCGFVKTAIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHATDPDEPLINEIDNVWELIPELEEKMHEHQKKAFEFLWHNIAGSMEPSLMEEKSNSSGGCVISHAPGAGKTFLINSFLVSYLKLFPRKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHGRRTSPGSSSTTAKSMILPGFPRPSSDVKHVLDCLGKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFAHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLQELDSKYRRKGGKVAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQKKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLETSKFDLRKGSKVRFVLSLISRVMKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI