AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87660.t1 MTR_3g071860 96.369 1267 46 0 1 1267 1 1267 0.0 2528
MS.gene87660.t1 MTR_7g026650 79.766 855 153 8 413 1266 317 1152 0.0 1361
MS.gene87660.t1 MTR_7g026650 72.611 314 79 2 21 333 11 318 2.09e-142 463
MS.gene87660.t1 MTR_5g083300 55.564 1339 479 26 5 1266 41 1340 0.0 1349
MS.gene87660.t1 MTR_5g083300 55.564 1339 479 26 5 1266 4 1303 0.0 1348
MS.gene87660.t1 MTR_1g081750 72.418 881 213 11 388 1266 263 1115 0.0 1242
MS.gene87660.t1 MTR_1g081750 68.127 251 76 2 1 251 1 247 6.06e-100 345
MS.gene87660.t1 MTR_7g026620 54.994 771 185 14 400 1170 36 644 0.0 736
MS.gene87660.t1 MTR_7g450820 35.221 724 396 18 550 1247 537 1213 2.42e-111 379
MS.gene87660.t1 MTR_7g450860 33.912 749 423 18 529 1253 557 1257 4.89e-111 379
MS.gene87660.t1 MTR_7g029525 33.607 732 436 17 529 1247 608 1302 5.81e-108 371
MS.gene87660.t1 MTR_7g050445 32.491 791 445 19 510 1267 564 1298 1.66e-104 361
MS.gene87660.t1 MTR_7g450790 32.917 720 433 15 549 1255 743 1425 1.51e-102 357
MS.gene87660.t1 MTR_4g088650 32.785 729 395 16 550 1255 548 1204 1.66e-98 342
MS.gene87660.t1 MTR_7g450780 32.245 766 434 22 529 1257 617 1334 2.44e-97 341
MS.gene87660.t1 MTR_7g026550 37.458 598 137 14 551 1147 6 367 1.43e-87 289
MS.gene87660.t1 MTR_2g437480 31.392 704 382 22 531 1222 387 1001 2.11e-87 307
MS.gene87660.t1 MTR_8g037345 30.791 721 409 23 508 1222 216 852 3.35e-84 296
MS.gene87660.t1 MTR_1g080420 25.658 608 364 18 675 1227 576 1150 6.29e-41 165
MS.gene87660.t1 MTR_1g080420 25.658 608 364 18 675 1227 707 1281 7.85e-41 165
MS.gene87660.t1 MTR_3g071660 45.810 179 45 3 846 1024 1 127 1.39e-34 129
MS.gene87660.t1 MTR_8g094070 25.729 583 332 25 664 1214 368 881 5.70e-31 132
MS.gene87660.t1 MTR_8g094070 25.729 583 332 25 664 1214 368 881 6.88e-31 132
MS.gene87660.t1 MTR_5g004720 23.414 662 372 27 640 1260 159 726 1.97e-27 121
MS.gene87660.t1 MTR_5g020000 26.095 548 316 20 716 1250 206 677 4.76e-26 116
MS.gene87660.t1 MTR_7g026590 60.000 95 32 2 466 560 11 99 1.11e-24 100
MS.gene87660.t1 MTR_4g096930 24.505 555 310 20 712 1241 752 1222 3.01e-24 111
MS.gene87660.t1 MTR_7g026610 67.606 71 23 0 200 270 13 83 2.74e-22 92.4
MS.gene87660.t1 MTR_3g106210 24.382 607 346 21 685 1256 270 798 1.08e-21 102
MS.gene87660.t1 MTR_3g106210 24.382 607 346 21 685 1256 270 798 1.12e-21 102
MS.gene87660.t1 MTR_3g084600 43.307 127 34 2 588 714 16 104 2.20e-21 93.6
MS.gene87660.t1 MTR_3g106210 24.382 607 346 21 685 1256 270 798 3.67e-21 101
MS.gene87660.t1 MTR_3g106210 24.382 607 346 21 685 1256 270 798 3.74e-21 101
MS.gene87660.t1 MTR_4g032945 73.585 53 14 0 102 154 1 53 1.95e-20 87.0
MS.gene87660.t1 MTR_3g071670 50.000 100 14 2 931 1030 2 65 3.94e-19 83.2
MS.gene87660.t1 MTR_2g084695 27.431 288 150 9 901 1185 9 240 5.08e-19 89.4
MS.gene87660.t1 MTR_1g013190 24.699 498 302 17 716 1205 308 740 5.81e-19 94.0
MS.gene87660.t1 MTR_1g069755 22.872 564 346 18 679 1222 389 883 5.92e-19 94.0
MS.gene87660.t1 MTR_7g026600 60.656 61 24 0 261 321 4 64 1.87e-18 80.9
MS.gene87660.t1 MTR_5g005840 23.455 550 324 17 710 1249 379 841 1.97e-18 92.0
MS.gene87660.t1 MTR_1g105050 23.091 550 325 17 710 1248 392 854 1.80e-15 82.4
MS.gene87660.t1 MTR_5g090090 22.510 502 316 12 715 1211 638 1071 2.65e-15 82.0
MS.gene87660.t1 MTR_5g090090 22.510 502 316 12 715 1211 638 1071 3.93e-15 81.6
MS.gene87660.t1 MTR_4g078495 32.335 167 100 4 1077 1236 530 690 4.00e-15 81.3
MS.gene87660.t1 MTR_4g078460 32.335 167 100 4 1077 1236 816 976 4.34e-15 81.3
MS.gene87660.t1 MTR_8g038125 72.973 37 10 0 582 618 10 46 2.83e-12 63.2
MS.gene87660.t1 MTR_3g053910 28.652 178 118 4 1035 1211 856 1025 8.35e-12 70.9
MS.gene87660.t1 MTR_3g053910 28.652 178 118 4 1035 1211 885 1054 9.92e-12 70.5
MS.gene87660.t1 MTR_7g090960 32.857 140 88 3 1084 1223 1208 1341 2.79e-11 68.9
MS.gene87660.t1 MTR_7g090960 32.857 140 88 3 1084 1223 1127 1260 2.92e-11 68.9
MS.gene87660.t1 MTR_7g089190 38.298 94 57 1 1113 1205 690 783 7.40e-11 67.4
MS.gene87660.t1 MTR_7g045505 22.604 407 237 14 858 1232 126 486 8.15e-11 67.4
MS.gene87660.t1 MTR_7g045505 22.604 407 237 14 858 1232 126 486 9.42e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87660.t1 AT5G20420 61.392 790 279 12 488 1266 486 1260 0.0 949
MS.gene87660.t1 AT5G20420 39.877 326 167 10 5 321 3 308 9.37e-57 216
MS.gene87660.t1 AT3G42670 58.571 840 313 14 443 1266 434 1254 0.0 949
MS.gene87660.t1 AT3G42670 39.333 300 161 7 5 302 3 283 8.60e-52 200
MS.gene87660.t1 AT3G42670 58.571 840 313 14 443 1266 434 1254 0.0 949
MS.gene87660.t1 AT3G42670 39.333 300 161 7 5 302 3 283 8.60e-52 200
MS.gene87660.t1 AT3G42670 58.571 840 313 14 443 1266 434 1254 0.0 949
MS.gene87660.t1 AT3G42670 39.333 300 161 7 5 302 3 283 8.60e-52 200
MS.gene87660.t1 AT3G42670 58.432 842 313 14 443 1266 434 1256 0.0 948
MS.gene87660.t1 AT3G42670 39.333 300 161 7 5 302 3 283 9.09e-52 200
MS.gene87660.t1 AT3G24340 32.852 761 420 21 510 1255 430 1114 6.90e-106 362
MS.gene87660.t1 AT1G05490 32.285 731 429 19 548 1251 693 1384 2.70e-101 353
MS.gene87660.t1 AT2G21450 30.490 715 403 21 530 1222 40 682 5.09e-81 282
MS.gene87660.t1 AT2G21450 31.250 656 369 19 584 1222 190 780 1.53e-80 283
MS.gene87660.t1 AT2G21450 31.250 656 369 19 584 1222 183 773 2.11e-80 283
MS.gene87660.t1 AT2G16390 30.184 762 423 23 479 1222 180 850 4.10e-80 283
MS.gene87660.t1 AT2G16390 30.184 762 423 23 479 1222 177 847 4.51e-80 283
MS.gene87660.t1 AT5G63950 25.694 576 326 23 671 1214 367 872 9.96e-29 125
MS.gene87660.t1 AT3G19210 22.886 603 350 22 681 1246 180 704 5.23e-28 123
MS.gene87660.t1 AT5G63950 26.178 573 310 24 671 1214 367 855 5.54e-28 123
MS.gene87660.t1 AT3G19210 23.306 605 347 23 681 1246 180 706 1.55e-27 121
MS.gene87660.t1 AT3G19210 23.306 605 347 22 681 1246 180 706 2.01e-27 120
MS.gene87660.t1 AT1G08600 28.333 240 133 7 680 911 718 926 5.20e-23 107
MS.gene87660.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.26e-17 89.7
MS.gene87660.t1 AT1G08600 28.333 240 133 7 680 911 718 926 5.20e-23 107
MS.gene87660.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.26e-17 89.7
MS.gene87660.t1 AT1G08600 28.333 240 133 7 680 911 718 926 5.20e-23 107
MS.gene87660.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.26e-17 89.7
MS.gene87660.t1 AT5G44800 25.946 555 306 24 712 1249 707 1173 1.51e-22 105
MS.gene87660.t1 AT4G31900 23.218 547 304 17 671 1205 214 656 4.50e-19 94.4
MS.gene87660.t1 AT4G31900 23.218 547 304 17 671 1205 214 656 4.60e-19 94.4
MS.gene87660.t1 AT4G31900 22.669 547 307 16 671 1205 173 615 6.43e-19 94.0
MS.gene87660.t1 AT1G08600 34.969 163 94 4 1074 1227 1102 1261 1.23e-17 89.7
MS.gene87660.t1 AT2G25170 24.016 508 295 19 715 1205 294 727 1.32e-17 89.7
MS.gene87660.t1 AT2G25170 24.016 508 295 19 715 1205 294 727 1.32e-17 89.7
MS.gene87660.t1 AT2G25170 24.016 508 295 19 715 1205 311 744 1.65e-17 89.4
MS.gene87660.t1 AT2G25170 24.016 508 295 19 715 1205 320 753 1.82e-17 89.4
MS.gene87660.t1 AT3G06010 23.689 553 320 19 710 1249 419 882 2.70e-16 85.1
MS.gene87660.t1 AT1G03750 30.939 181 111 5 1064 1236 523 697 6.28e-16 84.0
MS.gene87660.t1 AT5G66750 34.091 176 109 4 1084 1258 540 709 1.13e-15 82.8
MS.gene87660.t1 AT2G44980 25.538 372 227 14 858 1218 181 513 1.62e-13 75.9
MS.gene87660.t1 AT3G57300 32.414 145 92 3 1084 1228 1222 1360 2.88e-12 72.4
MS.gene87660.t1 AT3G57300 32.414 145 92 3 1084 1228 1222 1360 2.88e-12 72.4
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1101 1205 3.52e-12 72.0
MS.gene87660.t1 AT3G57300 32.414 145 92 3 1084 1228 1255 1393 3.55e-12 72.0
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1102 1206 3.55e-12 72.0
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1101 1205 3.80e-12 72.0
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1101 1205 3.80e-12 72.0
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1101 1205 3.86e-12 72.0
MS.gene87660.t1 AT2G28290 39.623 106 63 1 1100 1205 1102 1206 4.03e-12 72.0
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 788 934 4.94e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT2G18760 29.412 153 97 4 1075 1222 729 875 5.29e-12 71.2
MS.gene87660.t1 AT5G19310 29.319 191 122 4 1065 1254 427 605 5.94e-12 70.9
MS.gene87660.t1 AT5G19310 29.319 191 122 4 1065 1254 691 869 6.51e-12 70.9
MS.gene87660.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.18e-11 70.1
MS.gene87660.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.18e-11 70.1
MS.gene87660.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.18e-11 70.1
MS.gene87660.t1 AT5G05130 34.959 123 74 3 1084 1205 725 842 3.25e-11 68.6

Find 181 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTGTTTCAGAACAATTT+TGG 0.187519 3.1:-58680284 MS.gene87660:CDS
ATTAGTCAAATAATGATATT+TGG 0.190711 3.1:+58682433 None:intergenic
TGACGGTGATGGCAAGTTTA+AGG 0.211148 3.1:-58682480 MS.gene87660:CDS
CCTCTGAAATTAAGCCTTAT+AGG 0.223041 3.1:-58683051 MS.gene87660:CDS
TATAGATTGGATGAAGAAAT+TGG 0.225183 3.1:-58681520 MS.gene87660:CDS
AACAAGCATGTTGGAGAAAA+AGG 0.240380 3.1:-58682009 MS.gene87660:CDS
TCATCACTTGATATTGTTGT+AGG 0.263435 3.1:+58682350 None:intergenic
AACCTTGATTTAGTGCTTCT+AGG 0.271299 3.1:+58680359 None:intergenic
ACTATCCTTGGATTCTTTCT+TGG 0.272245 3.1:+58681555 None:intergenic
CATATAAGTTGTTCTCTTGT+AGG 0.274870 3.1:+58682619 None:intergenic
TTATAATCTTCATCAACTTT+TGG 0.276698 3.1:+58681031 None:intergenic
TAGTGATGTCAAACATGTTT+TGG 0.279882 3.1:-58680555 MS.gene87660:CDS
GCATAACATTGCTGGCTCTA+TGG 0.281856 3.1:-58680873 MS.gene87660:CDS
ACTATCTATTATTTCCTTGC+AGG 0.289125 3.1:+58682097 None:intergenic
GCAAAATGGCAAAGAGATTA+TGG 0.292136 3.1:-58679622 MS.gene87660:CDS
ACATCAAGTTATCTTCTTGA+TGG 0.297384 3.1:-58681900 MS.gene87660:CDS
CAGAAGAGGATGGTGGTAAG+AGG 0.300780 3.1:-58682568 MS.gene87660:CDS
CTTACTGGAATAGACGTAAA+TGG 0.306756 3.1:+58683804 None:intergenic
ATTCAATGGCGCCCATAAAA+AGG 0.307589 3.1:-58684945 None:intergenic
TCGACCGGGCCAGCAGAAAA+TGG 0.318508 3.1:-58679400 MS.gene87660:CDS
GGAAGAAAATCCTGATGATT+TGG 0.323484 3.1:-58681955 MS.gene87660:CDS
TTCTCTGCTTGCCATTTAGA+AGG 0.325243 3.1:+58679264 None:intergenic
CAAGATTGTGTATCAAGTTA+TGG 0.325678 3.1:-58682894 MS.gene87660:CDS
TGGTGCTGATGTGTTGAATT+TGG 0.328233 3.1:-58682387 MS.gene87660:CDS
GCAAAATCAATGATTCTTCC+TGG 0.333207 3.1:-58680593 MS.gene87660:CDS
ATTGATATATCTATGCTATT+AGG 0.336391 3.1:-58683852 MS.gene87660:CDS
AGAACTTCATGAATAAATTT+CGG 0.338011 3.1:+58680230 None:intergenic
GCTGTCGTCGAACTTGAACC+TGG 0.338982 3.1:+58680614 None:intergenic
ACTTCATGTTGTGGATGATA+TGG 0.339055 3.1:-58682258 MS.gene87660:CDS
TCTGATGAATCCCACCTATA+AGG 0.345661 3.1:+58683037 None:intergenic
CTCAACCTCAAGAGGGTAAC+TGG 0.345817 3.1:+58679896 None:intergenic
AGGGCTTTCTCTCAATGCTT+TGG 0.345836 3.1:+58680412 None:intergenic
AATTCTTCTGAGACTCTTCC+TGG 0.348075 3.1:-58680005 MS.gene87660:CDS
AGCAAATTTGATTTGAGAAA+AGG 0.352698 3.1:-58679771 MS.gene87660:CDS
GCACTTTGTCATCAGATATT+CGG 0.354010 3.1:-58683929 MS.gene87660:CDS
TCAACTTCATGTGATGGCTT+TGG 0.355507 3.1:+58682737 None:intergenic
TTAATGAAATCGACAACGTT+TGG 0.355745 3.1:-58680961 MS.gene87660:CDS
AAGTATTATGTTGAAGCCTT+TGG 0.358364 3.1:+58683101 None:intergenic
ACAGAAACTTCAGAAGAAAA+TGG 0.360997 3.1:-58679928 MS.gene87660:CDS
TCATTAATCAATGGTTCATC+AGG 0.361796 3.1:+58680977 None:intergenic
TTGTGGAAGATCCTTCTAAA+TGG 0.362063 3.1:-58679275 MS.gene87660:CDS
TTTCTTTGGCATAACATTGC+TGG 0.370580 3.1:-58680881 MS.gene87660:CDS
GAAATGTATCCCTTCCCATT+TGG 0.379249 3.1:+58682226 None:intergenic
ACAGTGCAGTGAAGAAAATA+AGG 0.381838 3.1:-58681068 MS.gene87660:CDS
AAGATTGTGTATCAAGTTAT+GGG 0.381846 3.1:-58682893 MS.gene87660:CDS
GATAGGTGGAATGCCCAAAA+AGG 0.388041 3.1:-58681105 MS.gene87660:intron
TCATCAAGTATCAAGATTCC+AGG 0.400291 3.1:+58680392 None:intergenic
TAATGAAATCGACAACGTTT+GGG 0.400568 3.1:-58680960 MS.gene87660:CDS
GCTCAGAACAAATCTTACTT+TGG 0.411413 3.1:+58679746 None:intergenic
AAAGAGATTATGGTACTAAC+AGG 0.411733 3.1:-58679612 MS.gene87660:CDS
CACAATCTAGATTACTCGTT+GGG 0.425426 3.1:-58682997 MS.gene87660:CDS
AGTAATATTCTCAATTCTGT+TGG 0.426455 3.1:+58680314 None:intergenic
AGCATAGATATATCAATTCC+AGG 0.429264 3.1:+58683858 None:intergenic
GCATTTGAAGCAGTATTGAA+TGG 0.430979 3.1:-58684032 MS.gene87660:CDS
ACTTCATGTGATGGCTTTGG+TGG 0.433440 3.1:+58682740 None:intergenic
ATCATGTTCACAACTATCCT+TGG 0.438359 3.1:+58681543 None:intergenic
AGGACCAGAGGTCGTTTCCT+TGG 0.438685 3.1:+58680731 None:intergenic
ATATAAGTTGTTCTCTTGTA+GGG 0.439124 3.1:+58682620 None:intergenic
ATTTCTTGTGCAAAGAAGAA+TGG 0.444673 3.1:-58682407 MS.gene87660:CDS
TTGTCGATTTCATTAATCAA+TGG 0.444704 3.1:+58680968 None:intergenic
TGATGATTTGGATGCCTTGT+GGG 0.445174 3.1:-58681943 MS.gene87660:CDS
ATACTGATATTATTAGTCCT+TGG 0.448089 3.1:-58682865 MS.gene87660:CDS
TCAAGTGATGAAGAAGTTGA+TGG 0.452513 3.1:-58682338 MS.gene87660:CDS
GTCGTACACATCAATAAAAC+CGG 0.453824 3.1:+58680034 None:intergenic
TTGACATCACTAGAAGGTCT+TGG 0.457036 3.1:+58680566 None:intergenic
CACAAGGCATCCAAATCATC+AGG 0.457690 3.1:+58681945 None:intergenic
AAGAAAAGAATTGATGAGAA+AGG 0.461369 3.1:+58680775 None:intergenic
CATGATTATGAAGAATGAAA+AGG 0.465758 3.1:-58679184 MS.gene87660:CDS
ATATCACATGCCCCTGGAGC+AGG 0.466821 3.1:-58680803 MS.gene87660:CDS
ATCAAAAGCTCAACCTCAAG+AGG 0.468504 3.1:+58679888 None:intergenic
CATGAAGAACTAGATCATAA+AGG 0.470683 3.1:-58682143 MS.gene87660:CDS
ACATCAAATTGAGAAACAAT+AGG 0.472158 3.1:+58682797 None:intergenic
TCTTTAAAGAGAAGATAAAG+AGG 0.473356 3.1:-58682286 MS.gene87660:CDS
GATTGAAGATGATATACTTA+GGG 0.473462 3.1:-58679241 MS.gene87660:CDS
CTGTCGTCGAACTTGAACCT+GGG 0.474123 3.1:+58680615 None:intergenic
AGATTGAAGATGATATACTT+AGG 0.475140 3.1:-58679242 MS.gene87660:CDS
ACACAACCTACGTAACGTTC+AGG 0.477670 3.1:+58682680 None:intergenic
CTAGAAGGTCTTGGAAATCC+AGG 0.479150 3.1:+58680575 None:intergenic
GTTAACTTATACGATGATCA+AGG 0.483615 3.1:-58683196 MS.gene87660:CDS
ACACCCTAGTGTTCTTGTCA+TGG 0.484111 3.1:-58680501 MS.gene87660:CDS
ATTTCCAAGGAAACGACCTC+TGG 0.484818 3.1:-58680735 MS.gene87660:CDS
TGGTGGTAAGAGGGATCAAA+AGG 0.487310 3.1:-58682558 MS.gene87660:CDS
CTGGGGAGGTTCGACGGCCA+TGG 0.487953 3.1:+58680633 None:intergenic
CACCCTAGTGTTCTTGTCAT+GGG 0.490664 3.1:-58680500 MS.gene87660:CDS
GTGCCGGTTTATCTTATCCA+TGG 0.492001 3.1:-58680650 MS.gene87660:CDS
ACAGTAGGCTCTTCTTCAGT+TGG 0.493427 3.1:+58682050 None:intergenic
AACACAACCACCACTTGAGT+TGG 0.495316 3.1:+58680826 None:intergenic
GAGCTAGACTTGTTTGAAAG+AGG 0.495712 3.1:-58679588 MS.gene87660:CDS
TATTATGTTGAAGCCTTTGG+AGG 0.500254 3.1:+58683104 None:intergenic
GTTACTTGAAGTTATTTCCA+AGG 0.501704 3.1:-58680748 MS.gene87660:CDS
AAGCAGTATTGAATGGATCA+TGG 0.507736 3.1:-58684025 MS.gene87660:CDS
AAAATGGAAGATTCCTGTGC+CGG 0.511195 3.1:-58680666 MS.gene87660:CDS
TATTGATGAGGAGAAGATGC+AGG 0.512826 3.1:-58680084 MS.gene87660:CDS
AAGCCATCACATGAAGTTGA+AGG 0.513509 3.1:-58682734 MS.gene87660:CDS
CAGATATTCGGATAAGATCA+AGG 0.513601 3.1:-58683917 MS.gene87660:CDS
TTCAGTATCAATGAAACGTA+AGG 0.514290 3.1:+58683962 None:intergenic
CTTCAACATAATACTTGTGA+AGG 0.515406 3.1:-58683094 MS.gene87660:CDS
TCAATCAATGCTTGTGCTGA+AGG 0.515842 3.1:-58679510 MS.gene87660:CDS
GAAGAACTACTTGGAAAGAG+TGG 0.517977 3.1:-58679326 MS.gene87660:CDS
AGGTTGTGTTGTTGAGAAGT+TGG 0.518892 3.1:-58682666 MS.gene87660:CDS
CGGCCATGGATAAGATAAAC+CGG 0.521874 3.1:+58680647 None:intergenic
TTCACAACATTTATAAGCCA+AGG 0.522728 3.1:+58682848 None:intergenic
AACTCTATTAAGAATCTCAC+AGG 0.523720 3.1:+58679666 None:intergenic
CATGGCCGTCGAACCTCCCC+AGG 0.526398 3.1:-58680632 MS.gene87660:CDS
GTTACTGACGACCGGGTCGA+TGG 0.527013 3.1:-58679364 MS.gene87660:CDS
CCATGGATGTATTGATCCGA+GGG 0.527482 3.1:+58679863 None:intergenic
GTGTATCAGTTACTGACGAC+CGG 0.528339 3.1:-58679372 MS.gene87660:CDS
ACATGTTTGACATCACTAGA+AGG 0.528845 3.1:+58680560 None:intergenic
AAGCCTTCAACTTCATGTGA+TGG 0.530172 3.1:+58682731 None:intergenic
TTGTGAACATGATTATAGAT+TGG 0.534056 3.1:-58681533 MS.gene87660:CDS
AGCCTACTGTAAATGAGAAG+TGG 0.536085 3.1:-58682037 MS.gene87660:CDS
TTCCACTTCTCATTTACAGT+AGG 0.536954 3.1:+58682035 None:intergenic
AGATGATATACTTAGGGAGA+TGG 0.537029 3.1:-58679235 MS.gene87660:CDS
GTTGTTGAGAAGTTGGAAGT+TGG 0.537957 3.1:-58682659 MS.gene87660:CDS
CTCTTCTTCAGATTCAGAAG+AGG 0.540428 3.1:-58682582 MS.gene87660:CDS
ATCCTAGAAGCACTAAATCA+AGG 0.543534 3.1:-58680361 MS.gene87660:CDS
AGCTAGACTTGTTTGAAAGA+GGG 0.545005 3.1:-58679587 MS.gene87660:CDS
AAATTGACATGAACATTGAT+CGG 0.547067 3.1:+58683222 None:intergenic
GGAATCTTGATACTTGATGA+AGG 0.550715 3.1:-58680389 MS.gene87660:CDS
CTCTATGGAACCATCACTCA+TGG 0.552151 3.1:-58680858 MS.gene87660:CDS
TACAATCTCATGTTGTTCAT+CGG 0.552573 3.1:+58679950 None:intergenic
TTGAACCTGGGGAGGTTCGA+CGG 0.553335 3.1:+58680627 None:intergenic
TCTTCAGATTCAGAAGAGGA+TGG 0.556076 3.1:-58682578 MS.gene87660:CDS
TGGATAAGATAAACCGGCAC+AGG 0.556571 3.1:+58680653 None:intergenic
AATGTATATATTTGTAAACC+AGG 0.562154 3.1:+58679987 None:intergenic
ATAAGTATAGAAGAACTACT+TGG 0.563508 3.1:-58679335 MS.gene87660:CDS
ACCATGGATGTATTGATCCG+AGG 0.564240 3.1:+58679862 None:intergenic
CCCTCGGATCAATACATCCA+TGG 0.564663 3.1:-58679863 MS.gene87660:CDS
AAGAACTACTTGGAAAGAGT+GGG 0.567137 3.1:-58679325 MS.gene87660:CDS
TACGATGATCAAGGTTCACT+TGG 0.567225 3.1:-58683187 MS.gene87660:CDS
ATTCAATGCTGATGCCTGCA+AGG 0.569248 3.1:-58682111 MS.gene87660:CDS
AGAAGAGGATGGTGGTAAGA+GGG 0.572455 3.1:-58682567 MS.gene87660:CDS
TGAAATTAAGCCTTATAGGT+GGG 0.572501 3.1:-58683047 MS.gene87660:CDS
CCTATAAGGCTTAATTTCAG+AGG 0.573942 3.1:+58683051 None:intergenic
GATTCTAAATACAGAAGGAA+AGG 0.574058 3.1:-58680197 MS.gene87660:CDS
TTTATTGATGTGTACGACAG+TGG 0.574824 3.1:-58680029 MS.gene87660:CDS
CATCAAGTATCAAGATTCCA+GGG 0.577717 3.1:+58680393 None:intergenic
GAGTACCAGTTACCCTCTTG+AGG 0.579454 3.1:-58679901 MS.gene87660:CDS
TCACAATCTAGATTACTCGT+TGG 0.580048 3.1:-58682998 MS.gene87660:CDS
TGTGTTATATCACATGCCCC+TGG 0.582668 3.1:-58680809 MS.gene87660:CDS
ACTTAGGGAGATGGTTGAAG+AGG 0.582988 3.1:-58679226 MS.gene87660:CDS
CGTCGAACTTGAACCTGGGG+AGG 0.583803 3.1:+58680619 None:intergenic
GCTTGCGACGTTCGAAACGT+AGG 0.587148 3.1:-58682712 MS.gene87660:CDS
GAAGCACTAAATCAAGGTTG+AGG 0.587727 3.1:-58680355 MS.gene87660:CDS
GTGGAAGGAAACAAGCATGT+TGG 0.588239 3.1:-58682018 MS.gene87660:CDS
ATTGTTCTGAAACAATGTGC+CGG 0.589502 3.1:+58680289 None:intergenic
TGATACCAAGAAAGAATCCA+AGG 0.593538 3.1:-58681560 MS.gene87660:CDS
TAGCCCATGACAAGAACACT+AGG 0.596138 3.1:+58680497 None:intergenic
CTGAAATTAAGCCTTATAGG+TGG 0.602209 3.1:-58683048 MS.gene87660:CDS
CTTATCTTCTTCCATCGACC+CGG 0.602308 3.1:+58679353 None:intergenic
AGCATCGAAAAGCGATGACG+AGG 0.602778 3.1:-58681976 MS.gene87660:CDS
TTACGATAATTAGCATCGAA+TGG 0.605659 3.1:+58684901 None:intergenic
TACTGTAAATGAGAAGTGGA+AGG 0.605920 3.1:-58682033 MS.gene87660:CDS
AGTTAGATTCTAAATACAGA+AGG 0.607419 3.1:-58680202 MS.gene87660:CDS
AAAGCATTGAGAGAAAGCCC+TGG 0.610887 3.1:-58680410 MS.gene87660:CDS
ATTCGCACACAGAAAATACA+TGG 0.611483 3.1:-58680435 MS.gene87660:CDS
CTGATGATTTGGATGCCTTG+TGG 0.612273 3.1:-58681944 MS.gene87660:CDS
GAAAGAACGTCATTTGCTTG+AGG 0.614499 3.1:-58680159 MS.gene87660:CDS
GGAATATACTGTCTTCGATG+TGG 0.617949 3.1:-58681499 MS.gene87660:CDS
TGTATTCATTTCTTCCCACA+AGG 0.620617 3.1:+58681929 None:intergenic
GAATTGAGAATATTACTCTC+CGG 0.621894 3.1:-58680308 MS.gene87660:CDS
GAGGAAGAGACTTCATGTTG+TGG 0.623646 3.1:-58682267 MS.gene87660:CDS
TCTAAATACAGAAGGAAAGG+CGG 0.627794 3.1:-58680194 MS.gene87660:CDS
TCAAGGTTCACTTGGTACAG+AGG 0.634309 3.1:-58683179 MS.gene87660:CDS
GATGTGTTGAATTTGGAGTA+CGG 0.641704 3.1:-58682380 MS.gene87660:CDS
TGTCGTCGAACTTGAACCTG+GGG 0.645719 3.1:+58680616 None:intergenic
AATTAACTCAGATATTGATG+AGG 0.647649 3.1:-58680096 MS.gene87660:CDS
AAATTTGAAGATCAAAGCAG+CGG 0.654526 3.1:-58679552 MS.gene87660:CDS
ATTGATGAGGAGAAGATGCA+GGG 0.655538 3.1:-58680083 MS.gene87660:CDS
TGTATCAGTTACTGACGACC+GGG 0.657785 3.1:-58679371 MS.gene87660:CDS
GAATGGATCATGGCAACCTG+TGG 0.660516 3.1:-58684015 MS.gene87660:CDS
GTCTTGGCAAGATACAGAAG+TGG 0.663388 3.1:-58680529 MS.gene87660:CDS
TCAAAAGCTCAACCTCAAGA+GGG 0.663408 3.1:+58679889 None:intergenic
TCAGATTCAGAAGAGGATGG+TGG 0.664458 3.1:-58682575 MS.gene87660:CDS
AGATTGTGTATCAAGTTATG+GGG 0.667010 3.1:-58682892 MS.gene87660:CDS
TTATCTTCTTGATGGAACTG+CGG 0.671963 3.1:-58681892 MS.gene87660:intron
AAGCTATTAATGTGAACACA+AGG 0.677127 3.1:-58682514 MS.gene87660:CDS
GAACATTGATCGGATTTGTG+AGG 0.698234 3.1:+58683232 None:intergenic
AGCCCATGACAAGAACACTA+GGG 0.709112 3.1:+58680498 None:intergenic
GTACAGCCTGAACGTTACGT+AGG 0.720601 3.1:-58682686 MS.gene87660:CDS
GAAGAACTAGATCATAAAGG+CGG 0.724609 3.1:-58682140 MS.gene87660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAATATCAAGAA+AGG + chr3.1:58680585-58680604 None:intergenic 10.0%
!! CATATATAGTAATAAAATTA+AGG + chr3.1:58679247-58679266 None:intergenic 10.0%
!! CTTAATTTATATATAATGAT+AGG - chr3.1:58682988-58683007 MS.gene87660:CDS 10.0%
!! TAATTTCTTGATAAAAAAAA+GGG - chr3.1:58680396-58680415 MS.gene87660:CDS 10.0%
!! TTAATTTCTTGATAAAAAAA+AGG - chr3.1:58680395-58680414 MS.gene87660:CDS 10.0%
!!! AATTAATACATTTTAATTAC+AGG - chr3.1:58679920-58679939 MS.gene87660:CDS 10.0%
!! AAAATATGAAAAATCATCAA+TGG - chr3.1:58679293-58679312 MS.gene87660:CDS 15.0%
!! AATTTATATATAATGATAGG+TGG - chr3.1:58682991-58683010 MS.gene87660:CDS 15.0%
!! ATTAGTCAAATAATGATATT+TGG + chr3.1:58681680-58681699 None:intergenic 15.0%
!!! AATTACATCTTTTTTAAAGA+AGG - chr3.1:58681165-58681184 MS.gene87660:intron 15.0%
!!! AGTTTTTCTAAGAAAAATTA+AGG + chr3.1:58679787-58679806 None:intergenic 15.0%
!!! TTTAAAACTTTTTACACTAA+CGG + chr3.1:58682303-58682322 None:intergenic 15.0%
!!! TTTTTTATTTGACTTACAAA+TGG + chr3.1:58682671-58682690 None:intergenic 15.0%
!! AAGGAAAAATAACAAAAATG+TGG + chr3.1:58679692-58679711 None:intergenic 20.0%
!! AATAAAAAGTTTGAACTTAC+TGG + chr3.1:58680324-58680343 None:intergenic 20.0%
!! AATGTATATATTTGTAAACC+AGG + chr3.1:58684126-58684145 None:intergenic 20.0%
!! AGAACTTCATGAATAAATTT+CGG + chr3.1:58683883-58683902 None:intergenic 20.0%
!! AGGAAAAATAACAAAAATGT+GGG + chr3.1:58679691-58679710 None:intergenic 20.0%
!! ATTGATATATCTATGCTATT+AGG - chr3.1:58680258-58680277 MS.gene87660:CDS 20.0%
!! CAAATGTGATTTATTTCAAA+TGG + chr3.1:58680748-58680767 None:intergenic 20.0%
!! TATACAATAAGTATCAAGAT+TGG + chr3.1:58679812-58679831 None:intergenic 20.0%
!! TTAACTGTATTCTCTTTATT+TGG - chr3.1:58682918-58682937 MS.gene87660:CDS 20.0%
!! TTTATCTCTTTGTAAATTGT+AGG - chr3.1:58680817-58680836 MS.gene87660:CDS 20.0%
!!! AAAAAGCTTTTGAATTTCTT+TGG - chr3.1:58683215-58683234 MS.gene87660:CDS 20.0%
!!! GATGTATTTTATGATTATGA+TGG - chr3.1:58681331-58681350 MS.gene87660:intron 20.0%
!!! TATTTGAGAAATATTTTCAG+TGG - chr3.1:58684466-58684485 MS.gene87660:intron 20.0%
!!! TGTAAAAAGTTTTAAACTGT+CGG - chr3.1:58682307-58682326 MS.gene87660:CDS 20.0%
!!! TGTTTTTATCTTCTTTTATG+AGG - chr3.1:58682474-58682493 MS.gene87660:CDS 20.0%
!!! TTATAATCTTCATCAACTTT+TGG + chr3.1:58683082-58683101 None:intergenic 20.0%
!!! TTGTTATTTTTCCTTTTACT+TGG - chr3.1:58679697-58679716 MS.gene87660:CDS 20.0%
!!! TTTAAAGTCACATATACAAT+TGG + chr3.1:58682343-58682362 None:intergenic 20.0%
! AAAAATCATCTCCAAGTAAA+AGG + chr3.1:58679711-58679730 None:intergenic 25.0%
! AAATTGACATGAACATTGAT+CGG + chr3.1:58680891-58680910 None:intergenic 25.0%
! AACTTCATTTCTTAGTAAAC+TGG - chr3.1:58680345-58680364 MS.gene87660:CDS 25.0%
! AAGAAAAGAATTGATGAGAA+AGG + chr3.1:58683338-58683357 None:intergenic 25.0%
! AAGATTGTGTATCAAGTTAT+GGG - chr3.1:58681217-58681236 MS.gene87660:intron 25.0%
! AATAATATCAAGAAAGGTCA+CGG + chr3.1:58680579-58680598 None:intergenic 25.0%
! AATGATGTGACAATTATGAT+TGG - chr3.1:58682392-58682411 MS.gene87660:CDS 25.0%
! AATTAACTCAGATATTGATG+AGG - chr3.1:58684014-58684033 MS.gene87660:CDS 25.0%
! ACATCAAATTGAGAAACAAT+AGG + chr3.1:58681316-58681335 None:intergenic 25.0%
! ACGAGTAATGAAAAATGAAA+AGG - chr3.1:58684395-58684414 MS.gene87660:intron 25.0%
! AGATTGAAGATGATATACTT+AGG - chr3.1:58684868-58684887 MS.gene87660:intron 25.0%
! AGTAATATTCTCAATTCTGT+TGG + chr3.1:58683799-58683818 None:intergenic 25.0%
! AGTTAGATTCTAAATACAGA+AGG - chr3.1:58683908-58683927 MS.gene87660:CDS 25.0%
! ATAAGTATAGAAGAACTACT+TGG - chr3.1:58684775-58684794 MS.gene87660:intron 25.0%
! ATACTGATATTATTAGTCCT+TGG - chr3.1:58681245-58681264 MS.gene87660:intron 25.0%
! ATATAAGTTGTTCTCTTGTA+GGG + chr3.1:58681493-58681512 None:intergenic 25.0%
! CATGATTATGAAGAATGAAA+AGG - chr3.1:58684926-58684945 MS.gene87660:CDS 25.0%
! GAAAATCCAAGTTCAAATTA+TGG + chr3.1:58680697-58680716 None:intergenic 25.0%
! GATTCAGTTTAAATATAGCA+GGG - chr3.1:58682506-58682525 MS.gene87660:CDS 25.0%
! GATTGAAGATGATATACTTA+GGG - chr3.1:58684869-58684888 MS.gene87660:intron 25.0%
! GGTAAAAACTCTTAATAAAG+AGG - chr3.1:58680952-58680971 MS.gene87660:CDS 25.0%
! TATAGATTGGATGAAGAAAT+TGG - chr3.1:58682590-58682609 MS.gene87660:CDS 25.0%
! TCAAATGGTTAATTCAGTTA+AGG + chr3.1:58680733-58680752 None:intergenic 25.0%
! TGATTCAGTTTAAATATAGC+AGG - chr3.1:58682505-58682524 MS.gene87660:CDS 25.0%
! TGATTTAGTTAAACGTTTGT+TGG - chr3.1:58679638-58679657 MS.gene87660:CDS 25.0%
! TGTACACTTGATAAATTTGT+TGG - chr3.1:58679482-58679501 MS.gene87660:CDS 25.0%
! TTAATCTAACAATCTATAGC+CGG + chr3.1:58679408-58679427 None:intergenic 25.0%
! TTGTGAACATGATTATAGAT+TGG - chr3.1:58682577-58682596 MS.gene87660:CDS 25.0%
!! AAATATTTTCAGTGGCAAAA+TGG - chr3.1:58684474-58684493 MS.gene87660:intron 25.0%
!! ACATTGTTTCAGAACAATTT+TGG - chr3.1:58683826-58683845 MS.gene87660:CDS 25.0%
!! ATAAACCATGATTTTGAATG+TGG - chr3.1:58679860-58679879 MS.gene87660:CDS 25.0%
!! TCTTTAAAGAGAAGATAAAG+AGG - chr3.1:58681824-58681843 MS.gene87660:intron 25.0%
!!! AGCAAATTTGATTTGAGAAA+AGG - chr3.1:58684339-58684358 MS.gene87660:intron 25.0%
!!! AGCTTTGTTAATTCACAATT+TGG + chr3.1:58679524-58679543 None:intergenic 25.0%
!!! ATATGGATTTTGAAACCAAA+TGG - chr3.1:58681869-58681888 MS.gene87660:intron 25.0%
!!! CTGTTTTGAAACAAGAATTA+GGG + chr3.1:58680059-58680078 None:intergenic 25.0%
!!! GAAATTCAAAAGCTTTTTTC+TGG + chr3.1:58683213-58683232 None:intergenic 25.0%
!!! TATGGATTTTGAAACCAAAT+GGG - chr3.1:58681870-58681889 MS.gene87660:intron 25.0%
!!! TGTTTTGAAACAAGAATTAG+GGG + chr3.1:58680058-58680077 None:intergenic 25.0%
!!! TTGTCGATTTCATTAATCAA+TGG + chr3.1:58683145-58683164 None:intergenic 25.0%
AAAGAGATTATGGTACTAAC+AGG - chr3.1:58684498-58684517 MS.gene87660:intron 30.0%
AAATTTGAAGATCAAAGCAG+CGG - chr3.1:58684558-58684577 MS.gene87660:intron 30.0%
AACTCTATTAAGAATCTCAC+AGG + chr3.1:58684447-58684466 None:intergenic 30.0%
AAGCTATTAATGTGAACACA+AGG - chr3.1:58681596-58681615 MS.gene87660:intron 30.0%
AAGTATTATGTTGAAGCCTT+TGG + chr3.1:58681012-58681031 None:intergenic 30.0%
ACAACATATCCAACAAAATG+AGG + chr3.1:58682725-58682744 None:intergenic 30.0%
ACAAGGAACAAAAATTCTGA+CGG - chr3.1:58681613-58681632 MS.gene87660:intron 30.0%
ACAGAAACTTCAGAAGAAAA+TGG - chr3.1:58684182-58684201 MS.gene87660:intron 30.0%
ACATCAAGTTATCTTCTTGA+TGG - chr3.1:58682210-58682229 MS.gene87660:CDS 30.0%
ACTATCTATTATTTCCTTGC+AGG + chr3.1:58682016-58682035 None:intergenic 30.0%
AGATTGTGTATCAAGTTATG+GGG - chr3.1:58681218-58681237 MS.gene87660:intron 30.0%
AGCATAGATATATCAATTCC+AGG + chr3.1:58680255-58680274 None:intergenic 30.0%
ATAATATCAAGAAAGGTCAC+GGG + chr3.1:58680578-58680597 None:intergenic 30.0%
ATTTCTTGTGCAAAGAAGAA+TGG - chr3.1:58681703-58681722 MS.gene87660:intron 30.0%
CAACATATCCAACAAAATGA+GGG + chr3.1:58682724-58682743 None:intergenic 30.0%
CAAGATTGTGTATCAAGTTA+TGG - chr3.1:58681216-58681235 MS.gene87660:intron 30.0%
CATATAAGTTGTTCTCTTGT+AGG + chr3.1:58681494-58681513 None:intergenic 30.0%
CATGAAGAACTAGATCATAA+AGG - chr3.1:58681967-58681986 MS.gene87660:CDS 30.0%
CTTCAACATAATACTTGTGA+AGG - chr3.1:58681016-58681035 MS.gene87660:CDS 30.0%
GAACTCTTAAAAATAGAGTC+AGG - chr3.1:58680117-58680136 MS.gene87660:CDS 30.0%
GAATTGAGAATATTACTCTC+CGG - chr3.1:58683802-58683821 MS.gene87660:intron 30.0%
GATTCTAAATACAGAAGGAA+AGG - chr3.1:58683913-58683932 MS.gene87660:CDS 30.0%
GTTAACTTATACGATGATCA+AGG - chr3.1:58680914-58680933 MS.gene87660:CDS 30.0%
GTTATCAGTTAGATTCATAC+CGG + chr3.1:58682969-58682988 None:intergenic 30.0%
TAAATATCAAGCCAAGTGTT+TGG + chr3.1:58680801-58680820 None:intergenic 30.0%
TAATGAAATCGACAACGTTT+GGG - chr3.1:58683150-58683169 MS.gene87660:CDS 30.0%
TACAAAATGCTGACAAATAG+CGG - chr3.1:58682822-58682841 MS.gene87660:CDS 30.0%
TACAATCTCATGTTGTTCAT+CGG + chr3.1:58684163-58684182 None:intergenic 30.0%
TCATCACTTGATATTGTTGT+AGG + chr3.1:58681763-58681782 None:intergenic 30.0%
TCATTAATCAATGGTTCATC+AGG + chr3.1:58683136-58683155 None:intergenic 30.0%
TGTGAACTTCAGCTTAAAAA+AGG - chr3.1:58681279-58681298 MS.gene87660:intron 30.0%
TTAAATATCAGCAATAGCGT+AGG - chr3.1:58682757-58682776 MS.gene87660:CDS 30.0%
TTAATGAAATCGACAACGTT+TGG - chr3.1:58683149-58683168 MS.gene87660:CDS 30.0%
TTCACAACATTTATAAGCCA+AGG + chr3.1:58681265-58681284 None:intergenic 30.0%
TTCAGTATCAATGAAACGTA+AGG + chr3.1:58680151-58680170 None:intergenic 30.0%
TTCTAGCCATAATTTGAACT+TGG - chr3.1:58680688-58680707 MS.gene87660:CDS 30.0%
! AATTTTCATCTGATCTTTCG+TGG - chr3.1:58681137-58681156 MS.gene87660:intron 30.0%
! ATCAAATTTTCATCCTCCAA+AGG - chr3.1:58680993-58681012 MS.gene87660:CDS 30.0%
! ATCATTTGTTGCATTCATCA+TGG + chr3.1:58679364-58679383 None:intergenic 30.0%
! CTCGAATGAAAATTTTCTGT+TGG + chr3.1:58681922-58681941 None:intergenic 30.0%
! GTTACTTGAAGTTATTTCCA+AGG - chr3.1:58683362-58683381 MS.gene87660:intron 30.0%
! TAGTGATGTCAAACATGTTT+TGG - chr3.1:58683555-58683574 MS.gene87660:intron 30.0%
! TGAAATTAAGCCTTATAGGT+GGG - chr3.1:58681063-58681082 MS.gene87660:CDS 30.0%
! TGATGCAAATGCCTTTTTAT+GGG + chr3.1:58679179-58679198 None:intergenic 30.0%
! TGTTTTGCACAGATCTTATA+TGG + chr3.1:58681198-58681217 None:intergenic 30.0%
! TTACGATAATTAGCATCGAA+TGG + chr3.1:58679212-58679231 None:intergenic 30.0%
! TTGATGCAAATGCCTTTTTA+TGG + chr3.1:58679180-58679199 None:intergenic 30.0%
! TTTTCATTACTCGTGAGATT+AGG + chr3.1:58684389-58684408 None:intergenic 30.0%
!! AAACATGTTTTGGATTGTCT+TGG - chr3.1:58683565-58683584 MS.gene87660:intron 30.0%
!! ATTTTAGTCCCTCATTTTGT+TGG - chr3.1:58682713-58682732 MS.gene87660:CDS 30.0%
!! CGACTATTTATTTTCTGTTG+TGG - chr3.1:58679948-58679967 MS.gene87660:CDS 30.0%
!! TAAAAAGGCATTTGCATCAA+TGG - chr3.1:58679180-58679199 MS.gene87660:CDS 30.0%
!!! ATAGCTTGCTTTGTTTTTGA+AGG + chr3.1:58684678-58684697 None:intergenic 30.0%
!!! ATGTGCAACTAAGTTTTTTG+CGG - chr3.1:58684290-58684309 MS.gene87660:intron 30.0%
!!! ATTTTGAAACCAAATGGGAA+GGG - chr3.1:58681875-58681894 MS.gene87660:intron 30.0%
!!! GCTGTTTTGAAACAAGAATT+AGG + chr3.1:58680060-58680079 None:intergenic 30.0%
!!! TCTATTTTTAAGAGTTCCAC+AGG + chr3.1:58680114-58680133 None:intergenic 30.0%
!!! TTCTTGCATGATTTTTAGTG+AGG - chr3.1:58684809-58684828 MS.gene87660:intron 30.0%
AACAAAAATTCTGACGGTGA+TGG - chr3.1:58681619-58681638 MS.gene87660:intron 35.0%
AACAAGCATGTTGGAGAAAA+AGG - chr3.1:58682101-58682120 MS.gene87660:CDS 35.0%
AACCTTGATTTAGTGCTTCT+AGG + chr3.1:58683754-58683773 None:intergenic 35.0%
AAGAACTACTTGGAAAGAGT+GGG - chr3.1:58684785-58684804 MS.gene87660:intron 35.0%
ACAGTGCAGTGAAGAAAATA+AGG - chr3.1:58683042-58683061 MS.gene87660:CDS 35.0%
ACATGTTTGACATCACTAGA+AGG + chr3.1:58683553-58683572 None:intergenic 35.0%
ACTATCCTTGGATTCTTTCT+TGG + chr3.1:58682558-58682577 None:intergenic 35.0%
ACTTCATGTTGTGGATGATA+TGG - chr3.1:58681852-58681871 MS.gene87660:intron 35.0%
AGACATAAACCAAACCTAGA+AGG + chr3.1:58679668-58679687 None:intergenic 35.0%
AGATGATATACTTAGGGAGA+TGG - chr3.1:58684875-58684894 MS.gene87660:intron 35.0%
ATCATGTTCACAACTATCCT+TGG + chr3.1:58682570-58682589 None:intergenic 35.0%
ATTCGCACACAGAAAATACA+TGG - chr3.1:58683675-58683694 MS.gene87660:intron 35.0%
CACAATCTAGATTACTCGTT+GGG - chr3.1:58681113-58681132 MS.gene87660:intron 35.0%
CAGATATTCGGATAAGATCA+AGG - chr3.1:58680193-58680212 MS.gene87660:CDS 35.0%
CAGTTAAGGACAAATCATTC+AGG + chr3.1:58680719-58680738 None:intergenic 35.0%
CATCAAGTATCAAGATTCCA+GGG + chr3.1:58683720-58683739 None:intergenic 35.0%
CCTATAAGGCTTAATTTCAG+AGG + chr3.1:58681062-58681081 None:intergenic 35.0%
CTCTTTGTAAATTGTAGGTG+TGG - chr3.1:58680822-58680841 MS.gene87660:CDS 35.0%
CTTACTGGAATAGACGTAAA+TGG + chr3.1:58680309-58680328 None:intergenic 35.0%
GAAGAAAAATCCAACTCAAG+TGG - chr3.1:58683274-58683293 MS.gene87660:CDS 35.0%
GAAGAACTAGATCATAAAGG+CGG - chr3.1:58681970-58681989 MS.gene87660:CDS 35.0%
GACATAAACCAAACCTAGAA+GGG + chr3.1:58679667-58679686 None:intergenic 35.0%
GCAAAATCAATGATTCTTCC+TGG - chr3.1:58683517-58683536 MS.gene87660:intron 35.0%
GCAAAATGGCAAAGAGATTA+TGG - chr3.1:58684488-58684507 MS.gene87660:intron 35.0%
GCACTTTGTCATCAGATATT+CGG - chr3.1:58680181-58680200 MS.gene87660:CDS 35.0%
GCTCAGAACAAATCTTACTT+TGG + chr3.1:58684367-58684386 None:intergenic 35.0%
GCTTATAAAGTTAGCTGCAA+AGG - chr3.1:58679445-58679464 MS.gene87660:CDS 35.0%
GGAAGAAAATCCTGATGATT+TGG - chr3.1:58682155-58682174 MS.gene87660:CDS 35.0%
GGAATCTTGATACTTGATGA+AGG - chr3.1:58683721-58683740 MS.gene87660:intron 35.0%
GGCGAAAAGAGTTCAAAAAA+TGG - chr3.1:58683428-58683447 MS.gene87660:intron 35.0%
GTCGTACACATCAATAAAAC+CGG + chr3.1:58684079-58684098 None:intergenic 35.0%
TACTGTAAATGAGAAGTGGA+AGG - chr3.1:58682077-58682096 MS.gene87660:CDS 35.0%
TATTATGTTGAAGCCTTTGG+AGG + chr3.1:58681009-58681028 None:intergenic 35.0%
TCAAGTGATGAAGAAGTTGA+TGG - chr3.1:58681772-58681791 MS.gene87660:intron 35.0%
TCACAATCTAGATTACTCGT+TGG - chr3.1:58681112-58681131 MS.gene87660:intron 35.0%
TCATCAAGTATCAAGATTCC+AGG + chr3.1:58683721-58683740 None:intergenic 35.0%
TCTAAATACAGAAGGAAAGG+CGG - chr3.1:58683916-58683935 MS.gene87660:CDS 35.0%
TGATAAAAAAAAGGGCAACC+CGG - chr3.1:58680404-58680423 MS.gene87660:CDS 35.0%
TGATACCAAGAAAGAATCCA+AGG - chr3.1:58682550-58682569 MS.gene87660:CDS 35.0%
TGTATTCATTTCTTCCCACA+AGG + chr3.1:58682184-58682203 None:intergenic 35.0%
TTATCTTCTTGATGGAACTG+CGG - chr3.1:58682218-58682237 MS.gene87660:CDS 35.0%
TTCCACTTCTCATTTACAGT+AGG + chr3.1:58682078-58682097 None:intergenic 35.0%
TTGTGGAAGATCCTTCTAAA+TGG - chr3.1:58684835-58684854 MS.gene87660:intron 35.0%
TTTATTGATGTGTACGACAG+TGG - chr3.1:58684081-58684100 MS.gene87660:intron 35.0%
TTTCTTTGGCATAACATTGC+TGG - chr3.1:58683229-58683248 MS.gene87660:CDS 35.0%
! AAGCAGTATTGAATGGATCA+TGG - chr3.1:58680085-58680104 MS.gene87660:CDS 35.0%
! ACACATAAACCATTTTCTGC+TGG + chr3.1:58684722-58684741 None:intergenic 35.0%
! AGCTAGACTTGTTTGAAAGA+GGG - chr3.1:58684523-58684542 MS.gene87660:intron 35.0%
! ATTTTGTCTATTGCTTGCTC+CGG - chr3.1:58682947-58682966 MS.gene87660:CDS 35.0%
! CTGAAATTAAGCCTTATAGG+TGG - chr3.1:58681062-58681081 MS.gene87660:CDS 35.0%
! GATGTGTTGAATTTGGAGTA+CGG - chr3.1:58681730-58681749 MS.gene87660:intron 35.0%
! GATTTTTCTTCCATGAGTGA+TGG + chr3.1:58683265-58683284 None:intergenic 35.0%
! GCATTTGAAGCAGTATTGAA+TGG - chr3.1:58680078-58680097 MS.gene87660:CDS 35.0%
! TCTCCTCTTTGTACCTTTTT+GGG + chr3.1:58683021-58683040 None:intergenic 35.0%
! TTCTCCTCTTTGTACCTTTT+TGG + chr3.1:58683022-58683041 None:intergenic 35.0%
!! ATCCTAGAAGCACTAAATCA+AGG - chr3.1:58683749-58683768 MS.gene87660:intron 35.0%
!! ATGTTGACTTACCAAACACT+TGG - chr3.1:58680787-58680806 MS.gene87660:CDS 35.0%
!! ATTGTTCTGAAACAATGTGC+CGG + chr3.1:58683824-58683843 None:intergenic 35.0%
!! CCTCTGAAATTAAGCCTTAT+AGG - chr3.1:58681059-58681078 MS.gene87660:CDS 35.0%
!! TGCATCTTTTCTTCAAGTTC+AGG + chr3.1:58683184-58683203 None:intergenic 35.0%
!!! AGCTTCTAGAGTGATTTTTC+TGG - chr3.1:58684638-58684657 MS.gene87660:intron 35.0%
!!! GATTTTGAAACCAAATGGGA+AGG - chr3.1:58681874-58681893 MS.gene87660:intron 35.0%
!!! GATTTTTAGTGAGGAGTTTG+TGG - chr3.1:58684818-58684837 MS.gene87660:intron 35.0%
AAAATGGAAGATTCCTGTGC+CGG - chr3.1:58683444-58683463 MS.gene87660:intron 40.0%
AACAGCCTCTTGTGTAAAAC+AGG + chr3.1:58680490-58680509 None:intergenic 40.0%
AAGCCATCACATGAAGTTGA+AGG - chr3.1:58681376-58681395 MS.gene87660:intron 40.0%
AAGCCTTCAACTTCATGTGA+TGG + chr3.1:58681382-58681401 None:intergenic 40.0%
AATTCCAGGTCGTAAAAAGC+TGG + chr3.1:58680241-58680260 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAACA+GGG + chr3.1:58680489-58680508 None:intergenic 40.0%
AGACTTGAATCCTCTTCAAC+CGG - chr3.1:58679386-58679405 MS.gene87660:CDS 40.0%
AGCCTACTGTAAATGAGAAG+TGG - chr3.1:58682073-58682092 MS.gene87660:CDS 40.0%
ATCAAAAGCTCAACCTCAAG+AGG + chr3.1:58684225-58684244 None:intergenic 40.0%
ATTGATGAGGAGAAGATGCA+GGG - chr3.1:58684027-58684046 MS.gene87660:CDS 40.0%
CTCTTCTTCAGATTCAGAAG+AGG - chr3.1:58681528-58681547 MS.gene87660:CDS 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr3.1:58680484-58680503 None:intergenic 40.0%
GAAAAATCCAACTCAAGTGG+TGG - chr3.1:58683277-58683296 MS.gene87660:intron 40.0%
GAAAGAACGTCATTTGCTTG+AGG - chr3.1:58683951-58683970 MS.gene87660:CDS 40.0%
GAAATGTATCCCTTCCCATT+TGG + chr3.1:58681887-58681906 None:intergenic 40.0%
GAACATTGATCGGATTTGTG+AGG + chr3.1:58680881-58680900 None:intergenic 40.0%
GAAGAACTACTTGGAAAGAG+TGG - chr3.1:58684784-58684803 MS.gene87660:intron 40.0%
GCATGCCACATTCAAAATCA+TGG + chr3.1:58679868-58679887 None:intergenic 40.0%
GGAATATACTGTCTTCGATG+TGG - chr3.1:58682611-58682630 MS.gene87660:CDS 40.0%
GTTGTTGAGAAGTTGGAAGT+TGG - chr3.1:58681451-58681470 MS.gene87660:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr3.1:58680533-58680552 None:intergenic 40.0%
TACGATGATCAAGGTTCACT+TGG - chr3.1:58680923-58680942 MS.gene87660:CDS 40.0%
TATTGATGAGGAGAAGATGC+AGG - chr3.1:58684026-58684045 MS.gene87660:CDS 40.0%
TCAAAAGCTCAACCTCAAGA+GGG + chr3.1:58684224-58684243 None:intergenic 40.0%
TCAACTTCATGTGATGGCTT+TGG + chr3.1:58681376-58681395 None:intergenic 40.0%
TCAATCAATGCTTGTGCTGA+AGG - chr3.1:58684600-58684619 MS.gene87660:intron 40.0%
TCTGATGAATCCCACCTATA+AGG + chr3.1:58681076-58681095 None:intergenic 40.0%
TCTTCAGATTCAGAAGAGGA+TGG - chr3.1:58681532-58681551 MS.gene87660:CDS 40.0%
TGGGTGAACTCTGGATTAAT+GGG + chr3.1:58680639-58680658 None:intergenic 40.0%
TTGACATCACTAGAAGGTCT+TGG + chr3.1:58683547-58683566 None:intergenic 40.0%
! AGGTTGTGTTGTTGAGAAGT+TGG - chr3.1:58681444-58681463 MS.gene87660:intron 40.0%
! ATGCCCAAAAAGGTACAAAG+AGG - chr3.1:58683015-58683034 MS.gene87660:CDS 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr3.1:58680482-58680501 MS.gene87660:CDS 40.0%
! GAAGCACTAAATCAAGGTTG+AGG - chr3.1:58683755-58683774 MS.gene87660:intron 40.0%
! GAGCTAGACTTGTTTGAAAG+AGG - chr3.1:58684522-58684541 MS.gene87660:intron 40.0%
! TGATGATTTGGATGCCTTGT+GGG - chr3.1:58682167-58682186 MS.gene87660:CDS 40.0%
! TGATTTTTCTGGACTCTGAG+TGG - chr3.1:58684649-58684668 MS.gene87660:intron 40.0%
! TGCTCTAACTAGTTTCTGCA+AGG + chr3.1:58679974-58679993 None:intergenic 40.0%
! TTCTCTGCTTGCCATTTAGA+AGG + chr3.1:58684849-58684868 None:intergenic 40.0%
!! AATTCTTCTGAGACTCTTCC+TGG - chr3.1:58684105-58684124 MS.gene87660:intron 40.0%
!! GTTGAGCTTTTGATAACCCT+CGG - chr3.1:58684231-58684250 MS.gene87660:intron 40.0%
!! TGGTGCTGATGTGTTGAATT+TGG - chr3.1:58681723-58681742 MS.gene87660:intron 40.0%
!!! TGCAACTAAGTTTTTTGCGG+AGG - chr3.1:58684293-58684312 MS.gene87660:intron 40.0%
AACACAACCACCACTTGAGT+TGG + chr3.1:58683287-58683306 None:intergenic 45.0%
ACACAACCTACGTAACGTTC+AGG + chr3.1:58681433-58681452 None:intergenic 45.0%
ACACCCTAGTGTTCTTGTCA+TGG - chr3.1:58683609-58683628 MS.gene87660:intron 45.0%
ACAGTAGGCTCTTCTTCAGT+TGG + chr3.1:58682063-58682082 None:intergenic 45.0%
ACTTAGGGAGATGGTTGAAG+AGG - chr3.1:58684884-58684903 MS.gene87660:intron 45.0%
AGAAAGGTCACGGGTAAACT+TGG + chr3.1:58680569-58680588 None:intergenic 45.0%
AGCCCATGACAAGAACACTA+GGG + chr3.1:58683615-58683634 None:intergenic 45.0%
AGGGCTTTCTCTCAATGCTT+TGG + chr3.1:58683701-58683720 None:intergenic 45.0%
ATTCAATGCTGATGCCTGCA+AGG - chr3.1:58681999-58682018 MS.gene87660:CDS 45.0%
ATTTCCAAGGAAACGACCTC+TGG - chr3.1:58683375-58683394 MS.gene87660:intron 45.0%
CAAAAACCACACTCTACACG+TGG - chr3.1:58683407-58683426 MS.gene87660:intron 45.0%
CAATCTATAGCCGGTTGAAG+AGG + chr3.1:58679399-58679418 None:intergenic 45.0%
CACCCTAGTGTTCTTGTCAT+GGG - chr3.1:58683610-58683629 MS.gene87660:intron 45.0%
CATTAATCCAGAGTTCACCC+AGG - chr3.1:58680638-58680657 MS.gene87660:CDS 45.0%
CCAGTTCCTTACAAATCGGA+GGG + chr3.1:58680615-58680634 None:intergenic 45.0%
CTAGAAGGTCTTGGAAATCC+AGG + chr3.1:58683538-58683557 None:intergenic 45.0%
CTCTATGGAACCATCACTCA+TGG - chr3.1:58683252-58683271 MS.gene87660:CDS 45.0%
CTGGGTGAACTCTGGATTAA+TGG + chr3.1:58680640-58680659 None:intergenic 45.0%
CTTATCTTCTTCCATCGACC+CGG + chr3.1:58684760-58684779 None:intergenic 45.0%
GAGGAAGAGACTTCATGTTG+TGG - chr3.1:58681843-58681862 MS.gene87660:intron 45.0%
GATAGGTGGAATGCCCAAAA+AGG - chr3.1:58683005-58683024 MS.gene87660:CDS 45.0%
GGGTGAACTCTGGATTAATG+GGG + chr3.1:58680638-58680657 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr3.1:58680527-58680546 None:intergenic 45.0%
GTCTTGGCAAGATACAGAAG+TGG - chr3.1:58683581-58683600 MS.gene87660:intron 45.0%
GTGCTGCGAAAAATCACTTC+CGG - chr3.1:58684057-58684076 MS.gene87660:intron 45.0%
GTGGAAGGAAACAAGCATGT+TGG - chr3.1:58682092-58682111 MS.gene87660:CDS 45.0%
GTGTATCAGTTACTGACGAC+CGG - chr3.1:58684738-58684757 MS.gene87660:intron 45.0%
TAGCCCATGACAAGAACACT+AGG + chr3.1:58683616-58683635 None:intergenic 45.0%
TCAAGGTTCACTTGGTACAG+AGG - chr3.1:58680931-58680950 MS.gene87660:CDS 45.0%
TCAGATTCAGAAGAGGATGG+TGG - chr3.1:58681535-58681554 MS.gene87660:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr3.1:58680526-58680545 None:intergenic 45.0%
TGGTGGTAAGAGGGATCAAA+AGG - chr3.1:58681552-58681571 MS.gene87660:CDS 45.0%
TGTATCAGTTACTGACGACC+GGG - chr3.1:58684739-58684758 MS.gene87660:intron 45.0%
TGTGTTATATCACATGCCCC+TGG - chr3.1:58683301-58683320 MS.gene87660:intron 45.0%
! AAAGGTTTTTCCTGCTCCAG+GGG + chr3.1:58683320-58683339 None:intergenic 45.0%
! ACCATGGATGTATTGATCCG+AGG + chr3.1:58684251-58684270 None:intergenic 45.0%
! AGAAAGGTTTTTCCTGCTCC+AGG + chr3.1:58683322-58683341 None:intergenic 45.0%
! AGAAGAGGATGGTGGTAAGA+GGG - chr3.1:58681543-58681562 MS.gene87660:CDS 45.0%
! CACAAGGCATCCAAATCATC+AGG + chr3.1:58682168-58682187 None:intergenic 45.0%
! CACGTGTAGAGTGTGGTTTT+TGG + chr3.1:58683409-58683428 None:intergenic 45.0%
! CCATGGATGTATTGATCCGA+GGG + chr3.1:58684250-58684269 None:intergenic 45.0%
! CTGATGATTTGGATGCCTTG+TGG - chr3.1:58682166-58682185 MS.gene87660:CDS 45.0%
! GAAAGGTTTTTCCTGCTCCA+GGG + chr3.1:58683321-58683340 None:intergenic 45.0%
! GTTGGTTTCCCTTCTAGGTT+TGG - chr3.1:58679656-58679675 MS.gene87660:CDS 45.0%
! TAAACCATTTTCTGCTGGCC+CGG + chr3.1:58684717-58684736 None:intergenic 45.0%
! TCTGAACCCTCCGATTTGTA+AGG - chr3.1:58680606-58680625 MS.gene87660:CDS 45.0%
! TGACGGTGATGGCAAGTTTA+AGG - chr3.1:58681630-58681649 MS.gene87660:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr3.1:58680493-58680512 MS.gene87660:CDS 45.0%
!! AAAGCATTGAGAGAAAGCCC+TGG - chr3.1:58683700-58683719 MS.gene87660:intron 45.0%
!! ACTTCATGTGATGGCTTTGG+TGG + chr3.1:58681373-58681392 None:intergenic 45.0%
!! CGTTTGTTGGTTTCCCTTCT+AGG - chr3.1:58679651-58679670 MS.gene87660:CDS 45.0%
!! GCATAACATTGCTGGCTCTA+TGG - chr3.1:58683237-58683256 MS.gene87660:CDS 45.0%
!!! AGAGTGTGGTTTTTGGAGCT+AGG + chr3.1:58683402-58683421 None:intergenic 45.0%
!!! GCAGCTGTTTTGATCAACCA+TGG + chr3.1:58684267-58684286 None:intergenic 45.0%
AAACAGGGTAAGGCTGCGTA+TGG + chr3.1:58680474-58680493 None:intergenic 50.0%
ACTAGACTTAACGTCGCTCC+TGG + chr3.1:58680659-58680678 None:intergenic 50.0%
CCCTCGGATCAATACATCCA+TGG - chr3.1:58684247-58684266 MS.gene87660:intron 50.0%
CTAGACTTAACGTCGCTCCT+GGG + chr3.1:58680658-58680677 None:intergenic 50.0%
CTCAACCTCAAGAGGGTAAC+TGG + chr3.1:58684217-58684236 None:intergenic 50.0%
CTGTCGTCGAACTTGAACCT+GGG + chr3.1:58683498-58683517 None:intergenic 50.0%
GAATGGATCATGGCAACCTG+TGG - chr3.1:58680095-58680114 MS.gene87660:CDS 50.0%
GAGTACCAGTTACCCTCTTG+AGG - chr3.1:58684209-58684228 MS.gene87660:intron 50.0%
GCCAGTTCCTTACAAATCGG+AGG + chr3.1:58680616-58680635 None:intergenic 50.0%
GGGGCCAGTTCCTTACAAAT+CGG + chr3.1:58680619-58680638 None:intergenic 50.0%
GTACAGCCTGAACGTTACGT+AGG - chr3.1:58681424-58681443 MS.gene87660:intron 50.0%
TGTCGTCGAACTTGAACCTG+GGG + chr3.1:58683497-58683516 None:intergenic 50.0%
! AGCATCGAAAAGCGATGACG+AGG - chr3.1:58682134-58682153 MS.gene87660:CDS 50.0%
! CAGAAGAGGATGGTGGTAAG+AGG - chr3.1:58681542-58681561 MS.gene87660:CDS 50.0%
! CCCTCCGATTTGTAAGGAAC+TGG - chr3.1:58680612-58680631 MS.gene87660:CDS 50.0%
! TATTGCACGCGCTTTTCGAC+CGG - chr3.1:58684695-58684714 MS.gene87660:intron 50.0%
! TGCTCCAGCTTTTTACGACC+TGG - chr3.1:58680234-58680253 MS.gene87660:CDS 50.0%
! TTTTCGCCACGTGTAGAGTG+TGG + chr3.1:58683416-58683435 None:intergenic 50.0%
!!! GTTTTTGGAGCTAGGACCAG+AGG + chr3.1:58683394-58683413 None:intergenic 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3.1:58680514-58680533 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr3.1:58680430-58680449 MS.gene87660:CDS 55.0%
AGGACCAGAGGTCGTTTCCT+TGG + chr3.1:58683382-58683401 None:intergenic 55.0%
AGGGTAAGGCTGCGTATGGT+GGG + chr3.1:58680470-58680489 None:intergenic 55.0%
ATATCACATGCCCCTGGAGC+AGG - chr3.1:58683307-58683326 MS.gene87660:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr3.1:58680431-58680450 MS.gene87660:CDS 55.0%
GCTGTCGTCGAACTTGAACC+TGG + chr3.1:58683499-58683518 None:intergenic 55.0%
GCTTGCGACGTTCGAAACGT+AGG - chr3.1:58681398-58681417 MS.gene87660:intron 55.0%
TTGAACCTGGGGAGGTTCGA+CGG + chr3.1:58683486-58683505 None:intergenic 55.0%
! ATTGCACGCGCTTTTCGACC+GGG - chr3.1:58684696-58684715 MS.gene87660:intron 55.0%
CAGGGTAAGGCTGCGTATGG+TGG + chr3.1:58680471-58680490 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr3.1:58680443-58680462 MS.gene87660:CDS 60.0%
CGTCGAACTTGAACCTGGGG+AGG + chr3.1:58683494-58683513 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr3.1:58680443-58680462 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr3.1:58680442-58680461 MS.gene87660:CDS 60.0%
GTTACTGACGACCGGGTCGA+TGG - chr3.1:58684746-58684765 MS.gene87660:intron 60.0%
TCGACCGGGCCAGCAGAAAA+TGG - chr3.1:58684710-58684729 MS.gene87660:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr3.1:58680442-58680461 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr3.1:58680426-58680445 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG - chr3.1:58680441-58680460 MS.gene87660:CDS 65.0%
CGTCGCTCCTGGGTGAACTC+TGG + chr3.1:58680648-58680667 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr3.1:58680437-58680456 MS.gene87660:CDS 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr3.1:58680436-58680455 MS.gene87660:CDS 65.0%
! CGTATGGTGGGACCCCTTCC+CGG + chr3.1:58680458-58680477 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr3.1:58680425-58680444 None:intergenic 65.0%
CATGGCCGTCGAACCTCCCC+AGG - chr3.1:58683478-58683497 MS.gene87660:intron 70.0%
CTGGGGAGGTTCGACGGCCA+TGG + chr3.1:58683480-58683499 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 58679170 58684962 58679170 ID=MS.gene87660
chr3.1 mRNA 58679170 58684962 58679170 ID=MS.gene87660.t1;Parent=MS.gene87660
chr3.1 exon 58684905 58684962 58684905 ID=MS.gene87660.t1.exon1;Parent=MS.gene87660.t1
chr3.1 CDS 58684905 58684962 58684905 ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1 exon 58683809 58684053 58683809 ID=MS.gene87660.t1.exon2;Parent=MS.gene87660.t1
chr3.1 CDS 58683809 58684053 58683809 ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1 exon 58681893 58683293 58681893 ID=MS.gene87660.t1.exon3;Parent=MS.gene87660.t1
chr3.1 CDS 58681893 58683293 58681893 ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1 exon 58681459 58681605 58681459 ID=MS.gene87660.t1.exon4;Parent=MS.gene87660.t1
chr3.1 CDS 58681459 58681605 58681459 ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
chr3.1 exon 58679170 58681122 58679170 ID=MS.gene87660.t1.exon5;Parent=MS.gene87660.t1
chr3.1 CDS 58679170 58681122 58679170 ID=cds.MS.gene87660.t1;Parent=MS.gene87660.t1
Gene Sequence

>MS.gene87660

ATGGCGCCCATAAAAAGGCATTTGCATCAATGGAAGCATCCATTCGATGCTAATTATCGTAAGCTTTTTTTTTTCCTTAATTTTATTACTATATATGCATGAGAAAGAAATAAAAAGAATAGCAAAATATGAAAAATCATCAATGGATTACAACATTGATTTTGTGATATTGAAAAGATTGTTATTCATTACCATGATGAATGCAACAAATGATATAGACTTGAATCCTCTTCAACCGGCTATAGATTGTTAGATTAAGAGAGATGCAGCAGACTGCTTATAAAGTTAGCTGCAAAGGATTCACTTTGTATTTGTACACTTGATAAATTTGTTGGTTTTGTACATTATTAACCAAATTGTGAATTAACAAAGCTCTTCGAATCGTTAATAAGTTACTTAATCTTGATTATTAACATTTAAAATCATAGTCAATACAGTAGATTACATGATTAATGAATTATTCAATCTTGATTTAGTTAAACGTTTGTTGGTTTCCCTTCTAGGTTTGGTTTATGTCTCCCACATTTTTGTTATTTTTCCTTTTACTTGGAGATGATTTTTGTTTTGCACACATAATTGAGATGTCAGTAATTCATAATTATATCTCTTTGCAACCTTAATTTTTCTTAGAAAAACTATCCAATCTTGATACTTATTGTATATTCATTAACAAAACTCAACTAATAAGACATAAACCATGATTTTGAATGTGGCATGCATGTACTTTCAGTTCTGATCAATGTAATTGAAAATTAATACATTTTAATTACAGGACAAACGACTATTTATTTTCTGTTGTGGCCTTGCAGAAACTAGTTAGAGCAAATTTCTATAACTTCATGTTCTCATTCATTAATATCTATAGATTTTTTACTATAGTTGCTTCCCCTAATTCTTGTTTCAAAACAGCATTTGAAGCAGTATTGAATGGATCATGGCAACCTGTGGAACTCTTAAAAATAGAGTCAGGAAAAACTACCTTACGTTTCATTGATACTGAACAAATTCAAAGCACTTTGTCATCAGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCCATTTACGTCTATTCCAGTAAGTTCAAACTTTTTATTAAACTTCATTTCTTAGTAAACTGGTGTTTATATGCATTTATTTGTTGATCTTTAATTTCTTGATAAAAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATACGCAGCCTTACCCTGTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACTAGTTGCGCCAAGTTTACCCGTGACCTTTCTTGATATTATTTTTTTTATCTGAACCCTCCGATTTGTAAGGAACTGGCCCCATTAATCCAGAGTTCACCCAGGAGCGACGTTAAGTCTAGTCAATGATTGTTCTAGCCATAATTTGAACTTGGATTTTCCTGAATGATTTGTCCTTAACTGAATTAACCATTTGAAATAAATCACATTTGATACATGTTTAATTTCTTGATGTTGACTTACCAAACACTTGGCTTGATATTTATCTCTTTGTAAATTGTAGGTGTGGATTGATGCAAGAATAAATTCTATACATAGACAGCCTCACAAATCCGATCAATGTTCATGTCAATTTTATGTTAACTTATACGATGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGAAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGATACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTCGTTGGGAAATTTTCATCTGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGAAGGTTTCATTCCATATAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGGAATGATACTGATATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAGCTTAAAAAAGGAATCACTAGTACCTATTGTTTCTCAATTTGATGTATTTTATGATTATGATGGAGAAGAAGATGAAGAGCCACCAAAGCCATCACATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAACGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTTGGTAATTTTCGAACGTGTCCCTACAAGAGAACAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGGATGGTGGTAAGAGGGATCAAAAGGTTAATAAGCTAAATCATTGCAAAGCTATTAATGTGAACACAAGGAACAAAAATTCTGACGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTTGTGCAAAGAAGAATGGTGCTGATGTGTTGAATTTGGAGTACGGCAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAAATTATAATAGTTTCTTTAAAGAGAAGATAAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTTGAAACCAAATGGGAAGGGATACATTTCAAAAAAGAAGCTCCAACAGAAAATTTTCATTCGAGTTATTCGTCTAACAGAAGTCATGTTCATGAAGAACTAGATCATAAAGGCGGTAGAACATTCAATGCTGATGCCTGCAAGGAAATAATAGATAGTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCTACTGTAAATGAGAAGTGGAAGGAAACAAGCATGTTGGAGAAAAAGGAAGAAGAAAAAGCATCGAAAAGCGATGACGAGGAAGAAAATCCTGATGATTTGGATGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACTGCGGTGTGTGTGACAATTTTTAGTATATATTTTTAATATTTTCTTGAGTTTATTTTTGTTACACCGTTAGTGTAAAAAGTTTTAAACTGTCGGCAAATCACAACCAATTGTATATGTGACTTTAAAAGTAACTATGATTGAAGTCAAACATTTTTAATGATGTGACAATTATGATTGGCTGACAGCGTACAAAGTCTTTACACTAGCAATGTATATGAATTAAATTCTTTGTTTTTTTGTTTTTATCTTCTTTTATGAGGCTAAAGACTGATTCAGTTTAAATATAGCAGGGTTCAACTGCAGAGTTTGTAGCTGATACCAAGAAAGAATCCAAGGATAGTTGTGAACATGATTATAGATTGGATGAAGAAATTGGAATATACTGTCTTCGATGTGGATTTGTGAAAACTGCAATACGAGACATTTCTGAGCCATTTGTAAGTCAAATAAAAAAGCATAACAAAAGTCTACATGTAATTTTAGTCCCTCATTTTGTTGGATATGTTGTCTACTGCAATGTTTAAATATCAGCAATAGCGTAGGAAATTTGAACAAATAGCTATTGTTCTGCAATAAGCTATTTAGTACAAAATGCTGACAAATAGCGGCACTGTATGTTGCATAGCACAATTTGAACAAACTTCTATTTTTTCGTGATTTACGATTGACAACACTCGTCTGTTAACTGTATTCTCTTTATTTGGTTAGATATTTTGTCTATTGCTTGCTCCGGTATGAATCTAACTGATAACTTAATTTATATATAATGATAGGTGGAATGCCCAAAAAGGTACAAAGAGGAGAAACAGTGCAGTGAAGAAAATAAGGAACATAAATCAGAGCCAAAAGTTGATGAAGATTATAATAATGATATGTTCTCGACTCATGCTACTGATCCTGATGAACCATTGATTAATGAAATCGACAACGTTTGGGAATTGATTCCTGAACTTGAAGAAAAGATGCATGAACACCAGAAAAAAGCTTTTGAATTTCTTTGGCATAACATTGCTGGCTCTATGGAACCATCACTCATGGAAGAAAAATCCAACTCAAGTGGTGGTTGTGTTATATCACATGCCCCTGGAGCAGGAAAAACCTTTCTCATCAATTCTTTTCTTGTCAGTTACTTGAAGTTATTTCCAAGGAAACGACCTCTGGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCTGTGCCGGTTTATCTTATCCATGGCCGTCGAACCTCCCCAGGTTCAAGTTCGACGACAGCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTTGGCAAGATACAGAAGTGGCACTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACAAAATTCGCACACAGAAAATACATGGCCAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTACTCTCCGGCACATTGTTTCAGAACAATTTTGGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTATTCATGAAGTTCTACAAGAGTTAGATTCTAAATACAGAAGGAAAGGCGGAAAAGTTGCGAAGAAAGAACGTCATTTGCTTGAGGCACGCGCAAGAAAATTCTTCTTGAACAACATTGAAAAGAAAATTAACTCAGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCGGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATATATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACCCTCGGATCAATACATCCATGGTTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAACAAGCAAATTTGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTCTGAGCCTAATCTCACGAGTAATGAAAAATGAAAAGGTTCTTATCTTTTGTCACAATCTTGCACCTGTGAGATTCTTAATAGAGTTATTTGAGAAATATTTTCAGTGGCAAAATGGCAAAGAGATTATGGTACTAACAGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGCCAGCAGAAAATGGTTTATGTGTATCAGTTACTGACGACCGGGTCGATGGAAGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA
Protein sequence

>MS.gene87660.t1

MAPIKRHLHQWKHPFDANYPFEAVLNGSWQPVELLKIESGKTTLRFIDTEQIQSTLSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDPFTSIPVWIDARINSIHRQPHKSDQCSCQFYVNLYDDQGSLGTEVKTLNKEVNAIEIDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFSSDLSWFVITSFLKKVSFHIRSVQNKIVYQVMGNDTDIISPWLINVVNFSLKKESLVPIVSQFDVFYDYDGEEDEEPPKPSHEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRTTYMIEDENSSSDSEEDGGKRDQKVNKLNHCKAINVNTRNKNSDGDGKFKVHKTDDISSKYHYLTNYISCAKKNGADVLNLEYGNEPTTISSDEEVDGNVTLRNYNSFFKEKIKRKRLHVVDDMDFETKWEGIHFKKEAPTENFHSSYSSNRSHVHEELDHKGGRTFNADACKEIIDSYMKNFDSLPTEEEPTVNEKWKETSMLEKKEEEKASKSDDEEENPDDLDALWEEMNTALTSSYLLDGTAGSTAEFVADTKKESKDSCEHDYRLDEEIGIYCLRCGFVKTAIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHATDPDEPLINEIDNVWELIPELEEKMHEHQKKAFEFLWHNIAGSMEPSLMEEKSNSSGGCVISHAPGAGKTFLINSFLVSYLKLFPRKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHGRRTSPGSSSTTAKSMILPGFPRPSSDVKHVLDCLGKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFAHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLQELDSKYRRKGGKVAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQKKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLETSKFDLRKGSKVRFVLSLISRVMKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI