Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87710.t1 | AES79839.1 | 94.8 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 2.10E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87710.t1 | Q5CCK4 | 44.4 | 363 | 153 | 8 | 24 | 342 | 203 | 560 | 6.6e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87710.t1 | G7KY51 | 94.8 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 1.5e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87710.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87710.t1 | MTR_7g073240 | 94.783 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 0.0 | 681 |
| MS.gene87710.t1 | MTR_4g028130 | 50.263 | 380 | 147 | 6 | 1 | 342 | 213 | 588 | 2.14e-113 | 349 |
| MS.gene87710.t1 | MTR_4g028130 | 45.060 | 415 | 152 | 8 | 1 | 342 | 213 | 624 | 2.00e-103 | 317 |
| MS.gene87710.t1 | MTR_4g028130 | 45.060 | 415 | 152 | 8 | 1 | 342 | 213 | 624 | 1.43e-101 | 319 |
| MS.gene87710.t1 | MTR_2g011940 | 44.590 | 305 | 133 | 5 | 73 | 341 | 320 | 624 | 3.42e-78 | 252 |
| MS.gene87710.t1 | MTR_2g011940 | 44.590 | 305 | 133 | 5 | 73 | 341 | 320 | 624 | 7.70e-78 | 251 |
| MS.gene87710.t1 | MTR_2g011940 | 44.590 | 305 | 133 | 5 | 73 | 341 | 311 | 615 | 7.53e-77 | 253 |
| MS.gene87710.t1 | MTR_3g467380 | 49.767 | 215 | 97 | 7 | 1 | 209 | 233 | 442 | 6.71e-56 | 196 |
| MS.gene87710.t1 | MTR_3g467380 | 51.181 | 127 | 49 | 2 | 229 | 342 | 522 | 648 | 1.95e-31 | 125 |
| MS.gene87710.t1 | MTR_5g075410 | 50.270 | 185 | 87 | 3 | 36 | 219 | 254 | 434 | 8.42e-53 | 186 |
| MS.gene87710.t1 | MTR_5g075410 | 56.944 | 72 | 30 | 1 | 231 | 301 | 507 | 578 | 1.78e-17 | 84.0 |
| MS.gene87710.t1 | MTR_7g083700 | 38.835 | 103 | 62 | 1 | 105 | 206 | 126 | 228 | 3.40e-17 | 81.3 |
| MS.gene87710.t1 | MTR_1g058350 | 38.298 | 141 | 65 | 7 | 82 | 208 | 50 | 182 | 1.85e-16 | 79.3 |
| MS.gene87710.t1 | MTR_7g059330 | 39.216 | 102 | 60 | 2 | 105 | 204 | 623 | 724 | 1.91e-16 | 80.9 |
| MS.gene87710.t1 | MTR_8g023990 | 40.000 | 110 | 56 | 5 | 105 | 207 | 171 | 277 | 2.71e-14 | 73.9 |
| MS.gene87710.t1 | MTR_7g105370 | 41.905 | 105 | 54 | 5 | 110 | 210 | 65 | 166 | 6.07e-14 | 72.0 |
| MS.gene87710.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 105 | 192 | 117 | 205 | 2.32e-13 | 71.2 |
| MS.gene87710.t1 | MTR_5g053920 | 38.053 | 113 | 56 | 5 | 104 | 204 | 193 | 303 | 8.16e-13 | 69.3 |
| MS.gene87710.t1 | MTR_1g093600 | 34.641 | 153 | 69 | 7 | 92 | 215 | 168 | 318 | 1.30e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87710.t1 | AT4G32010 | 44.847 | 359 | 153 | 7 | 24 | 342 | 203 | 556 | 2.05e-90 | 287 |
| MS.gene87710.t1 | AT4G32010 | 44.353 | 363 | 153 | 8 | 24 | 342 | 203 | 560 | 1.59e-88 | 282 |
| MS.gene87710.t1 | AT2G30470 | 45.201 | 323 | 123 | 5 | 73 | 342 | 262 | 583 | 5.23e-80 | 259 |
| MS.gene87710.t1 | AT4G21550 | 39.209 | 278 | 148 | 7 | 38 | 299 | 254 | 526 | 2.50e-50 | 176 |
| MS.gene87710.t1 | AT4G21550 | 40.357 | 280 | 146 | 7 | 38 | 301 | 254 | 528 | 5.75e-45 | 164 |
| MS.gene87710.t1 | AT4G21550 | 38.258 | 264 | 142 | 7 | 38 | 285 | 254 | 512 | 2.54e-44 | 159 |
| MS.gene87710.t1 | AT3G26790 | 40.385 | 104 | 61 | 1 | 105 | 207 | 91 | 194 | 3.65e-18 | 84.3 |
| MS.gene87710.t1 | AT3G24650 | 38.211 | 123 | 74 | 2 | 105 | 225 | 571 | 693 | 1.42e-17 | 84.3 |
| MS.gene87710.t1 | AT1G28300 | 39.669 | 121 | 69 | 3 | 72 | 189 | 136 | 255 | 1.54e-17 | 83.2 |
| MS.gene87710.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 9.08e-17 | 79.7 |
| MS.gene87710.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.11e-16 | 79.7 |
| MS.gene87710.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.15e-16 | 79.3 |
| MS.gene87710.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.18e-16 | 79.3 |
| MS.gene87710.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.47e-16 | 79.0 |
| MS.gene87710.t1 | AT1G13260 | 38.983 | 118 | 65 | 5 | 104 | 216 | 186 | 301 | 4.19e-16 | 78.6 |
| MS.gene87710.t1 | AT3G25730 | 37.815 | 119 | 65 | 5 | 105 | 216 | 182 | 298 | 1.34e-15 | 77.0 |
| MS.gene87710.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.41e-15 | 73.2 |
| MS.gene87710.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.41e-15 | 73.2 |
| MS.gene87710.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.42e-15 | 74.3 |
| MS.gene87710.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.55e-15 | 74.7 |
| MS.gene87710.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.66e-14 | 73.6 |
| MS.gene87710.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.66e-14 | 73.6 |
| MS.gene87710.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.03e-14 | 71.2 |
| MS.gene87710.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.03e-14 | 71.2 |
| MS.gene87710.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.03e-14 | 71.2 |
| MS.gene87710.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 8.22e-14 | 71.2 |
| MS.gene87710.t1 | AT2G46870 | 38.889 | 108 | 57 | 5 | 105 | 205 | 34 | 139 | 9.96e-14 | 71.2 |
| MS.gene87710.t1 | AT1G01030 | 33.588 | 131 | 72 | 5 | 105 | 222 | 55 | 183 | 8.30e-13 | 68.9 |
| MS.gene87710.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 9.78e-13 | 68.9 |
| MS.gene87710.t1 | AT3G61970 | 37.037 | 108 | 59 | 4 | 105 | 205 | 22 | 127 | 1.64e-12 | 67.8 |
| MS.gene87710.t1 | AT4G01500 | 35.714 | 126 | 65 | 5 | 77 | 192 | 2 | 121 | 2.05e-12 | 67.8 |
| MS.gene87710.t1 | AT1G25560 | 37.931 | 116 | 58 | 5 | 105 | 208 | 194 | 307 | 2.41e-12 | 67.8 |
| MS.gene87710.t1 | AT1G01030 | 37.288 | 118 | 64 | 5 | 105 | 214 | 55 | 170 | 2.83e-12 | 67.4 |
Find 75 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATCTGTGGAGAATTTA+TGG | 0.154338 | 7.1:+29136771 | MS.gene87710:CDS |
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7.1:+29135251 | MS.gene87710:CDS |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7.1:-29135191 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7.1:+29135168 | MS.gene87710:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7.1:-29134980 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7.1:-29134548 | None:intergenic |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7.1:+29134341 | MS.gene87710:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7.1:-29134419 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7.1:-29134590 | None:intergenic |
| AGAAGGGTATATTCATAAAT+AGG | 0.288688 | 7.1:+29136340 | MS.gene87710:CDS |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7.1:-29134345 | None:intergenic |
| CATTGATGCTGGAACTTACT+TGG | 0.314019 | 7.1:+29135880 | MS.gene87710:CDS |
| CAAGAATTACAACAATTATC+TGG | 0.358413 | 7.1:+29134605 | MS.gene87710:CDS |
| ATATCACTGTCTTCAATTCA+TGG | 0.371160 | 7.1:-29136913 | None:intergenic |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7.1:-29134521 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7.1:+29134359 | MS.gene87710:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | 7.1:-29136327 | None:intergenic |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | 7.1:+29135419 | MS.gene87710:intron |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7.1:-29134471 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | 7.1:+29135944 | MS.gene87710:CDS |
| GGGATCTGTGGAGAATTTAT+GGG | 0.418012 | 7.1:+29136772 | MS.gene87710:CDS |
| TGCTCAGAATGGAGAAAGTT+GGG | 0.421979 | 7.1:+29136752 | MS.gene87710:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7.1:-29134440 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7.1:+29135148 | MS.gene87710:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7.1:+29134362 | MS.gene87710:CDS |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.457967 | 7.1:+29136751 | MS.gene87710:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7.1:+29135138 | MS.gene87710:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7.1:-29134920 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | 7.1:+29135747 | MS.gene87710:CDS |
| ACAATGTTTGAATTAACTGT+TGG | 0.478449 | 7.1:-29135933 | None:intergenic |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7.1:-29134356 | None:intergenic |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7.1:+29134944 | MS.gene87710:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | 7.1:+29136323 | MS.gene87710:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | 7.1:-29136324 | None:intergenic |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | 7.1:+29135423 | MS.gene87710:intron |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | 7.1:+29135458 | MS.gene87710:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7.1:+29134952 | MS.gene87710:CDS |
| GGCATCGGCTTCTTCTATAC+AGG | 0.506593 | 7.1:+29135480 | MS.gene87710:CDS |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | 7.1:-29135448 | None:intergenic |
| TTTCCACCTATTTCGGAACC+AGG | 0.514336 | 7.1:+29135104 | MS.gene87710:CDS |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7.1:+29135429 | MS.gene87710:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7.1:+29135186 | MS.gene87710:CDS |
| TATCACTGTCTTCAATTCAT+GGG | 0.523152 | 7.1:-29136912 | None:intergenic |
| ATTGATGCTGGAACTTACTT+GGG | 0.528064 | 7.1:+29135881 | MS.gene87710:CDS |
| ATGGAGAAAGTTGGGATCTG+TGG | 0.531161 | 7.1:+29136760 | MS.gene87710:CDS |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.532282 | 7.1:+29135465 | MS.gene87710:CDS |
| ATGTTTGAATTAACTGTTGG+AGG | 0.534643 | 7.1:-29135930 | None:intergenic |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7.1:+29135242 | MS.gene87710:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | 7.1:-29134600 | None:intergenic |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7.1:+29134935 | MS.gene87710:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.543683 | 7.1:+29135105 | MS.gene87710:CDS |
| TAACAAAGAAGCATTGATGC+TGG | 0.545646 | 7.1:+29135869 | MS.gene87710:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7.1:+29136783 | MS.gene87710:CDS |
| TTTGAATTAACTGTTGGAGG+TGG | 0.549434 | 7.1:-29135927 | None:intergenic |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7.1:+29135430 | MS.gene87710:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7.1:+29135137 | MS.gene87710:CDS |
| AACAGTTAATTCAAACATTG+TGG | 0.562770 | 7.1:+29135935 | MS.gene87710:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7.1:+29134412 | MS.gene87710:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | 7.1:+29136324 | MS.gene87710:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7.1:+29134413 | MS.gene87710:CDS |
| TTAGGAACTACTAGCTCTTG+TGG | 0.580404 | 7.1:-29135795 | None:intergenic |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7.1:+29134365 | MS.gene87710:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7.1:+29134519 | MS.gene87710:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7.1:-29134909 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.606854 | 7.1:+29135106 | MS.gene87710:CDS |
| ACAACAGGATGAACGAGCAA+TGG | 0.610776 | 7.1:+29136714 | MS.gene87710:intron |
| AGTGTGATAAGTGCTCAGAA+TGG | 0.614321 | 7.1:+29136741 | MS.gene87710:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7.1:+29135431 | MS.gene87710:CDS |
| GGATCTGTGGAGAATTTATG+GGG | 0.621372 | 7.1:+29136773 | MS.gene87710:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | 7.1:+29135459 | MS.gene87710:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7.1:-29134470 | None:intergenic |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7.1:+29134543 | MS.gene87710:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7.1:-29134912 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.686812 | 7.1:+29135107 | MS.gene87710:CDS |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7.1:+29135432 | MS.gene87710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATATAAAATAAAATG+AGG | - | chr7.1:29134806-29134825 | None:intergenic | 10.0% |
| !! | ATTTACATAAATACAAAAAT+AGG | - | chr7.1:29135710-29135729 | None:intergenic | 10.0% |
| !!! | AAAACGATAAAATTTTTTAT+AGG | - | chr7.1:29136458-29136477 | None:intergenic | 10.0% |
| !!! | AAACGATAAAATTTTTTATA+GGG | - | chr7.1:29136457-29136476 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAGATGTTTTAT+CGG | + | chr7.1:29136262-29136281 | MS.gene87710:intron | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | + | chr7.1:29136025-29136044 | MS.gene87710:intron | 10.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | - | chr7.1:29135039-29135058 | None:intergenic | 15.0% |
| !!! | GTCATAAAGAAAATATATTT+TGG | - | chr7.1:29136663-29136682 | None:intergenic | 15.0% |
| !!! | TTTACTAAACTTTTCATTAT+AGG | + | chr7.1:29134642-29134661 | MS.gene87710:intron | 15.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | - | chr7.1:29135327-29135346 | None:intergenic | 20.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | - | chr7.1:29134603-29134622 | None:intergenic | 20.0% |
| !! | TGAAAAGTTTAGTAAAGTAA+TGG | - | chr7.1:29134638-29134657 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | - | chr7.1:29134732-29134751 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | + | chr7.1:29136075-29136094 | MS.gene87710:intron | 20.0% |
| !!! | ACTGCAAATTTTTTTGTAAA+AGG | - | chr7.1:29135409-29135428 | None:intergenic | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | - | chr7.1:29136426-29136445 | None:intergenic | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | + | chr7.1:29136085-29136104 | MS.gene87710:intron | 20.0% |
| !!! | TCGACATATTTAAAATAACA+AGG | + | chr7.1:29136485-29136504 | MS.gene87710:intron | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | + | chr7.1:29135168-29135187 | MS.gene87710:CDS | 20.0% |
| !!! | TTATGTATATTTCTATCCAT+AGG | - | chr7.1:29135380-29135399 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTAAATATGTCG+AGG | - | chr7.1:29136486-29136505 | None:intergenic | 20.0% |
| ! | AACAGTTAATTCAAACATTG+TGG | + | chr7.1:29135935-29135954 | MS.gene87710:CDS | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | - | chr7.1:29134359-29134378 | None:intergenic | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | + | chr7.1:29135747-29135766 | MS.gene87710:CDS | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | + | chr7.1:29135419-29135438 | MS.gene87710:intron | 25.0% |
| ! | ACAATGTTTGAATTAACTGT+TGG | - | chr7.1:29135936-29135955 | None:intergenic | 25.0% |
| ! | CAAGAATTACAACAATTATC+TGG | + | chr7.1:29134605-29134624 | MS.gene87710:CDS | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | - | chr7.1:29136054-29136073 | None:intergenic | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | + | chr7.1:29135348-29135367 | MS.gene87710:intron | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | + | chr7.1:29134359-29134378 | MS.gene87710:CDS | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | - | chr7.1:29136540-29136559 | None:intergenic | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | - | chr7.1:29136539-29136558 | None:intergenic | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+AGG | + | chr7.1:29136340-29136359 | MS.gene87710:CDS | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | + | chr7.1:29136104-29136123 | MS.gene87710:intron | 25.0% |
| !! | TAAAATTGAAGCACTCAATA+TGG | - | chr7.1:29136235-29136254 | None:intergenic | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | - | chr7.1:29134887-29134906 | None:intergenic | 25.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | - | chr7.1:29134348-29134367 | None:intergenic | 25.0% |
| !!! | CATATGTCTAATTTGTTCTA+TGG | + | chr7.1:29135664-29135683 | MS.gene87710:intron | 25.0% |
| !!! | GTTAACAAATCTTGTTTTCA+AGG | + | chr7.1:29136845-29136864 | MS.gene87710:intron | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | + | chr7.1:29135062-29135081 | MS.gene87710:intron | 25.0% |
| AATTCTTGATCGGTAATCTT+AGG | - | chr7.1:29134593-29134612 | None:intergenic | 30.0% | |
| ATGTTTGAATTAACTGTTGG+AGG | - | chr7.1:29135933-29135952 | None:intergenic | 30.0% | |
| ATTTGTAAATAAATACCCCC+TGG | - | chr7.1:29135125-29135144 | None:intergenic | 30.0% | |
| GAATGTTTGCTCAAAATCTA+TGG | + | chr7.1:29136195-29136214 | MS.gene87710:intron | 30.0% | |
| GACTATACTAAAATTGTTGC+AGG | + | chr7.1:29136299-29136318 | MS.gene87710:intron | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | + | chr7.1:29136047-29136066 | MS.gene87710:intron | 30.0% | |
| GTTTGTATGATTAGTACTCT+TGG | + | chr7.1:29134838-29134857 | MS.gene87710:intron | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | - | chr7.1:29135194-29135213 | None:intergenic | 30.0% | |
| TGTGTAAGATTGCAAAAATG+TGG | + | chr7.1:29135536-29135555 | MS.gene87710:intron | 30.0% | |
| ! | AATTGCTATTGAACTATGAG+TGG | - | chr7.1:29135290-29135309 | None:intergenic | 30.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | + | chr7.1:29134341-29134360 | MS.gene87710:CDS | 30.0% |
| ! | ATTCTGCTATGTGTTATTAG+AGG | + | chr7.1:29135591-29135610 | MS.gene87710:intron | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | - | chr7.1:29134983-29135002 | None:intergenic | 30.0% |
| ! | CTTTAACACATCATTGGTTA+TGG | - | chr7.1:29134881-29134900 | None:intergenic | 30.0% |
| ! | GACATATTTTCCACCTATTT+CGG | + | chr7.1:29135097-29135116 | MS.gene87710:intron | 30.0% |
| ! | TAGGTCAAATGTTTTATGCT+AGG | + | chr7.1:29134661-29134680 | MS.gene87710:intron | 30.0% |
| ! | TCACATGTTCTTTTCTTCTT+AGG | - | chr7.1:29135816-29135835 | None:intergenic | 30.0% |
| ! | TTTTGAGCAAACATTCAATG+TGG | - | chr7.1:29136191-29136210 | None:intergenic | 30.0% |
| !! | AGCAGGATATATGTTTTAGA+AGG | + | chr7.1:29135203-29135222 | MS.gene87710:CDS | 30.0% |
| AACTGATAATAGGGTTTCGA+AGG | + | chr7.1:29135458-29135477 | MS.gene87710:CDS | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | + | chr7.1:29134365-29134384 | MS.gene87710:CDS | 35.0% | |
| ACATAGCAATGTTATTCACC+TGG | - | chr7.1:29135743-29135762 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | + | chr7.1:29134935-29134954 | MS.gene87710:CDS | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | + | chr7.1:29135459-29135478 | MS.gene87710:CDS | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | + | chr7.1:29136783-29136802 | MS.gene87710:CDS | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | - | chr7.1:29136330-29136349 | None:intergenic | 35.0% | |
| ATGTAAATTTCTTTCCCACC+AGG | + | chr7.1:29135722-29135741 | MS.gene87710:intron | 35.0% | |
| ATTAGTAGTTTAGCCTGACA+TGG | - | chr7.1:29136633-29136652 | None:intergenic | 35.0% | |
| ATTGATGCTGGAACTTACTT+GGG | + | chr7.1:29135881-29135900 | MS.gene87710:CDS | 35.0% | |
| GGAAATTCAAATTCCTTTGG+TGG | + | chr7.1:29134362-29134381 | MS.gene87710:CDS | 35.0% | |
| GTTAATGTCTTCTCGAATAG+TGG | - | chr7.1:29134923-29134942 | None:intergenic | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | + | chr7.1:29135138-29135157 | MS.gene87710:CDS | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | + | chr7.1:29134413-29134432 | MS.gene87710:CDS | 35.0% | |
| TGTGACAATGCTCTAATCAT+TGG | + | chr7.1:29136161-29136180 | MS.gene87710:intron | 35.0% | |
| TGTTTGCTCAAAATCTATGG+AGG | + | chr7.1:29136198-29136217 | MS.gene87710:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | + | chr7.1:29135137-29135156 | MS.gene87710:CDS | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | + | chr7.1:29135944-29135963 | MS.gene87710:CDS | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | + | chr7.1:29134412-29134431 | MS.gene87710:CDS | 35.0% | |
| TTGCATTGTGATTGAACAAC+AGG | + | chr7.1:29136699-29136718 | MS.gene87710:intron | 35.0% | |
| TTTGAATTAACTGTTGGAGG+TGG | - | chr7.1:29135930-29135949 | None:intergenic | 35.0% | |
| TTTGTTCTAACTTCCATGTC+AGG | + | chr7.1:29136617-29136636 | MS.gene87710:intron | 35.0% | |
| ! | TCAATAGCAAGAGTTGACTT+GGG | - | chr7.1:29134473-29134492 | None:intergenic | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | + | chr7.1:29135251-29135270 | MS.gene87710:CDS | 35.0% |
| !! | TAACAAAGAAGCATTGATGC+TGG | + | chr7.1:29135869-29135888 | MS.gene87710:CDS | 35.0% |
| !! | TGCAAAAGATTCTGAGACTT+AGG | - | chr7.1:29134443-29134462 | None:intergenic | 35.0% |
| !! | TTTTAGAAGGAGTACATGCT+TGG | + | chr7.1:29135216-29135235 | MS.gene87710:CDS | 35.0% |
| ACCTCCTATCATTGCAAAGA+AGG | + | chr7.1:29136323-29136342 | MS.gene87710:CDS | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | + | chr7.1:29135148-29135167 | MS.gene87710:CDS | 40.0% | |
| AGCAATGTTATTCACCTGGT+GGG | - | chr7.1:29135739-29135758 | None:intergenic | 40.0% | |
| AGTGTGATAAGTGCTCAGAA+TGG | + | chr7.1:29136741-29136760 | MS.gene87710:CDS | 40.0% | |
| CAGCACCCTGATCTTATAAA+AGG | + | chr7.1:29136531-29136550 | MS.gene87710:intron | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | + | chr7.1:29135242-29135261 | MS.gene87710:CDS | 40.0% | |
| CATTGATGCTGGAACTTACT+TGG | + | chr7.1:29135880-29135899 | MS.gene87710:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | + | chr7.1:29136324-29136343 | MS.gene87710:CDS | 40.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | - | chr7.1:29134474-29134493 | None:intergenic | 40.0% | |
| GACAATGCTCTAATCATTGG+AGG | + | chr7.1:29136164-29136183 | MS.gene87710:intron | 40.0% | |
| GGATCTGTGGAGAATTTATG+GGG | + | chr7.1:29136773-29136792 | MS.gene87710:CDS | 40.0% | |
| GGGATCTGTGGAGAATTTAT+GGG | + | chr7.1:29136772-29136791 | MS.gene87710:CDS | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | + | chr7.1:29134493-29134512 | MS.gene87710:CDS | 40.0% | |
| TAGCAATGTTATTCACCTGG+TGG | - | chr7.1:29135740-29135759 | None:intergenic | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | + | chr7.1:29135423-29135442 | MS.gene87710:intron | 40.0% | |
| TGCTCAGAATGGAGAAAGTT+GGG | + | chr7.1:29136752-29136771 | MS.gene87710:CDS | 40.0% | |
| TGGGATCTGTGGAGAATTTA+TGG | + | chr7.1:29136771-29136790 | MS.gene87710:CDS | 40.0% | |
| TGTCTCACAGTAGGAACTAT+AGG | - | chr7.1:29136513-29136532 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | - | chr7.1:29134551-29134570 | None:intergenic | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | - | chr7.1:29134524-29134543 | None:intergenic | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | + | chr7.1:29135186-29135205 | MS.gene87710:CDS | 40.0% | |
| ! | AGCTTTTCTATGCTGTCATC+AGG | + | chr7.1:29136874-29136893 | MS.gene87710:intron | 40.0% |
| ! | TTAGGAACTACTAGCTCTTG+TGG | - | chr7.1:29135798-29135817 | None:intergenic | 40.0% |
| AACATTTAACCGGATGGACC+CGG | + | chr7.1:29135429-29135448 | MS.gene87710:CDS | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | + | chr7.1:29134543-29134562 | MS.gene87710:CDS | 45.0% | |
| ACAACAGGATGAACGAGCAA+TGG | + | chr7.1:29136714-29136733 | MS.gene87710:intron | 45.0% | |
| ATGGAGAAAGTTGGGATCTG+TGG | + | chr7.1:29136760-29136779 | MS.gene87710:CDS | 45.0% | |
| CCCTTCTTTGCAATGATAGG+AGG | - | chr7.1:29136327-29136346 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | - | chr7.1:29135451-29135470 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | + | chr7.1:29135449-29135468 | MS.gene87710:CDS | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | - | chr7.1:29135450-29135469 | None:intergenic | 45.0% | |
| CTCCAATTCATCATGTCGCA+AGG | + | chr7.1:29134519-29134538 | MS.gene87710:CDS | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | - | chr7.1:29134915-29134934 | None:intergenic | 45.0% | |
| GTCATGTAGGCTCAAACCTA+TGG | + | chr7.1:29135361-29135380 | MS.gene87710:intron | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | + | chr7.1:29136751-29136770 | MS.gene87710:CDS | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | + | chr7.1:29135105-29135124 | MS.gene87710:CDS | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | + | chr7.1:29135104-29135123 | MS.gene87710:CDS | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | + | chr7.1:29135465-29135484 | MS.gene87710:CDS | 45.0% |
| !! | TTGCTTTTCACCACCACCAA+AGG | - | chr7.1:29134378-29134397 | None:intergenic | 45.0% |
| ACATTTAACCGGATGGACCC+GGG | + | chr7.1:29135430-29135449 | MS.gene87710:CDS | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | - | chr7.1:29135113-29135132 | None:intergenic | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | + | chr7.1:29135448-29135467 | MS.gene87710:CDS | 50.0% | |
| CTCGAATAGTGGCACAATGG+CGG | - | chr7.1:29134912-29134931 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | + | chr7.1:29134944-29134963 | MS.gene87710:CDS | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | + | chr7.1:29135106-29135125 | MS.gene87710:CDS | 50.0% | |
| !! | GGCATCGGCTTCTTCTATAC+AGG | + | chr7.1:29135480-29135499 | MS.gene87710:CDS | 50.0% |
| ATTTAACCGGATGGACCCGG+GGG | + | chr7.1:29135432-29135451 | MS.gene87710:CDS | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | + | chr7.1:29135431-29135450 | MS.gene87710:CDS | 55.0% | |
| CCACCTATTTCGGAACCAGG+GGG | + | chr7.1:29135107-29135126 | MS.gene87710:CDS | 55.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | - | chr7.1:29134422-29134441 | None:intergenic | 55.0% |
| !! | TCAGGGTGCTGTCTCACAGT+AGG | - | chr7.1:29136522-29136541 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | + | chr7.1:29134952-29134971 | MS.gene87710:CDS | 55.0% |
| CCCCCTGGTTCCGAAATAGG+TGG | - | chr7.1:29135110-29135129 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | - | chr7.1:29135441-29135460 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 29134341 | 29136923 | 29134341 | ID=MS.gene87710 |
| chr7.1 | mRNA | 29134341 | 29136923 | 29134341 | ID=MS.gene87710.t1;Parent=MS.gene87710 |
| chr7.1 | exon | 29134341 | 29134630 | 29134341 | ID=MS.gene87710.t1.exon1;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29134341 | 29134630 | 29134341 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29134901 | 29134997 | 29134901 | ID=MS.gene87710.t1.exon2;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29134901 | 29134997 | 29134901 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29135098 | 29135272 | 29135098 | ID=MS.gene87710.t1.exon3;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29135098 | 29135272 | 29135098 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29135428 | 29135501 | 29135428 | ID=MS.gene87710.t1.exon4;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29135428 | 29135501 | 29135428 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29135744 | 29135989 | 29135744 | ID=MS.gene87710.t1.exon5;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29135744 | 29135989 | 29135744 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29136321 | 29136361 | 29136321 | ID=MS.gene87710.t1.exon6;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29136321 | 29136361 | 29136321 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29136721 | 29136804 | 29136721 | ID=MS.gene87710.t1.exon7;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29136721 | 29136804 | 29136721 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| chr7.1 | exon | 29136896 | 29136923 | 29136896 | ID=MS.gene87710.t1.exon8;Parent=MS.gene87710.t1 |
| chr7.1 | CDS | 29136896 | 29136923 | 29136896 | ID=cds.MS.gene87710.t1;Parent=MS.gene87710.t1 |
| Gene Sequence |
| Protein sequence |
