AlfalfaGEDB | MS.gene87830

M. sativa cultivar XinJiangDaYe / MS.gene87830

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87830.t1	RHN40114.1	98.4	642	7	1	48	689	47	685	5.00E-257	897.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87830.t1	O64639	56.8	696	216	14	35	689	32	683	2.1e-150	534.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87830.t1	G7LCR0	98.3	642	8	1	48	689	47	685	3.6e-257	897.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87830.t1	MTR_8g035560	97.250	691	11	3	1	689	1	685	0.0	1358
MS.gene87830.t1	MTR_0007s0390	48.311	681	257	19	55	689	54	685	5.29e-178	523
MS.gene87830.t1	MTR_2g105260	35.806	782	349	25	1	689	1	722	8.30e-114	359
MS.gene87830.t1	MTR_1g102360	50.712	351	126	12	361	688	228	554	1.20e-82	272
MS.gene87830.t1	MTR_1g102360	42.918	233	93	8	14	240	1	199	2.38e-43	165
MS.gene87830.t1	MTR_2g084120	37.768	233	114	4	32	236	18	247	2.05e-39	150
MS.gene87830.t1	MTR_6g016040	44.848	165	84	4	71	235	105	262	2.10e-36	142
MS.gene87830.t1	MTR_6g088510	44.512	164	87	3	72	235	86	245	5.19e-36	141
MS.gene87830.t1	MTR_6g088510	37.121	132	73	6	534	661	246	371	4.96e-13	72.0
MS.gene87830.t1	MTR_6g088610	44.848	165	87	3	72	236	283	443	1.16e-35	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87830.t1	AT2G45590	54.926	741	224	26	1	689	1	683	0.0	662
MS.gene87830.t1	AT4G25390	45.798	714	296	20	1	686	1	651	3.48e-166	492
MS.gene87830.t1	AT5G51770	45.950	716	293	23	1	687	1	651	5.26e-157	468
MS.gene87830.t1	AT1G80870	35.734	736	381	24	1	689	1	691	1.16e-113	358
MS.gene87830.t1	AT4G25390	40.828	507	225	17	1	480	1	459	5.36e-84	274
MS.gene87830.t1	AT3G58690	39.241	237	118	7	23	236	7	240	9.88e-42	157
MS.gene87830.t1	AT3G58690	34.899	149	80	6	519	659	224	363	1.18e-13	73.9
MS.gene87830.t1	AT3G24550	46.667	165	84	3	72	236	268	428	4.69e-37	147
MS.gene87830.t1	AT3G24550	34.783	138	81	3	529	661	422	555	3.10e-16	83.2
MS.gene87830.t1	AT1G49270	44.379	169	91	3	68	236	320	485	2.80e-36	145

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Find 224 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGCTTCCGACCGGAC+CGG	0.575759	8.4:-61948318	None:intergenic
AAAGAAGAATAGGAAACCAA+GGG	0.637179	8.4:+61949194	MS.gene87830:CDS
AAAGCGACGGTTTCGCCGGA+GGG	0.537753	8.4:-61948178	None:intergenic
AAATGATATTGATCGGTCGC+CGG	0.608870	8.4:+61948756	MS.gene87830:CDS
AAATGTGATGTGTATAGTTT+CGG	0.501258	8.4:+61949567	MS.gene87830:CDS
AACCAAAACCAGCTTCCGAC+CGG	0.551056	8.4:-61948323	None:intergenic
AACCACATCACCACCACCAC+CGG	0.528235	8.4:-61949085	None:intergenic
AACCGTCGCTTTGAAAGTAA+TGG	0.479349	8.4:+61948189	MS.gene87830:CDS
AAGAGAAGCCTTGATTGTCA+CGG	0.630668	8.4:+61949270	MS.gene87830:CDS
AAGAGAGGTGGTGGTGGTGG+TGG	0.342603	8.4:+61948904	MS.gene87830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAATAGGAAACCAA+GGG	+	chr8.4:61949194-61949213	MS.gene87830:CDS	30.0%
AAGGAGAAATAGTCAAGATT+GGG	+	chr8.4:61949437-61949456	MS.gene87830:CDS	30.0%
ACTATACACATCACATTTCT+CGG	-	chr8.4:61949565-61949584	None:intergenic	30.0%
AGAGAGCAAATCTAATTTCA+TGG	+	chr8.4:61949661-61949680	MS.gene87830:CDS	30.0%
GAGAGCAAATCTAATTTCAT+GGG	+	chr8.4:61949662-61949681	MS.gene87830:CDS	30.0%
GATTTGAAAGGGAAATTTGA+GGG	-	chr8.4:61949900-61949919	None:intergenic	30.0%
TGATTTGAAAGGGAAATTTG+AGG	-	chr8.4:61949901-61949920	None:intergenic	30.0%
TTAATATCACCATGAATCAC+AGG	-	chr8.4:61948490-61948509	None:intergenic	30.0%
AATAGTCAAGATTGGGGTAA+TGG	+	chr8.4:61949444-61949463	MS.gene87830:CDS	35.0%
AGAAAGAGTAAGAGTAGTAG+AGG	+	chr8.4:61949363-61949382	MS.gene87830:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	61947869	61949938	61947869	ID=MS.gene87830
chr8.4	mRNA	61947869	61949938	61947869	ID=MS.gene87830.t1;Parent=MS.gene87830
chr8.4	exon	61947869	61949938	61947869	ID=MS.gene87830.t1.exon1;Parent=MS.gene87830.t1
chr8.4	CDS	61947869	61949938	61947869	ID=cds.MS.gene87830.t1;Parent=MS.gene87830.t1

Gene Sequence

>MS.gene87830

ATGCCATCCCGTCCTCCGCCACCACAACCACTTCCAACCATAGCAACCATCACACCTCCCCACCACCACCACCACCACCGCCGTGAGTTTCTCATCGGCTGCCTCATCTCCGCTGCTATCTTCCTCACCGCCGCAATAATCTCCCTCACTATCTTCCTCTACCGTAAACTCTCACACAACCGAACAACACCCGTCGACCAAAACCACCGCCGCTTCTCCTACTCCATCCTCCGCCGCGCATCAAACTCATTCTCCGCTTCAACTCGTCTCGGCCACGGCGGCTTCGGTTCTGTTCACAAAGCCACACTCCCCTCCGGCGAAACCGTCGCTTTGAAAGTAATGGATTCGCCTGGTTCGATTCAAGGTGAAAGAGAGTTTCACAACGAACTCTCTTTATGCTCGAATCTTCGTTCTCCGTTCATTCTTTCACTTCTCGGTTACTCTTCGGACCGGTCCGGTCGGAAGCTGGTTTTGGTTTACGAGCTTATGTCGAACCGGAGTCTTCAAGATGCGTTGTTAGACCGGAGGTGTGATGAGTTGATGGTTTGGTCGAACCGGTTCGATGTGGTTGTTTCGGTTGCGAAAGGACTTGAGTATCTTCATCATGAATGTAATCCTCCTGTGATTCATGGTGATATTAAACCTAGTAATGTTCTTTTGGATCGTGAATTTAGAGCTAAGATTGGTGATTTTGGTCTTGCTAGGGTTAAGTGTTTGGAAGATTCTGGAATGGAAATGATGGTTGAAGAAATTCATCATCATCATCATGAGAAGAAGAAAAAGAAAGATGATTTTGTTGTTGTTGGTGGTGTGAATGAGGATTGTAGTTCTGTTTCTGTTGTTGAAGAATTTGAGAGTGCTGTTAGTGTTACTAATACTACTGCTGGAAATGATATTGATCGGTCGCCGGAGAGTTGTAATGTTAGGGTTTTGGTTGATTCTGATGCTTCACCGGAGGTGGCGATTGTTTCGCAATCAAGTGTTGTGTCTGATGGTTGTTTTGATAAGTTTAGTATTGATAGTGGGAATCAGAGGAAGAGAGGTGGTGGTGGTGGTGGTGGTTCTGGGAGGGATTGGTGGTGGAAGCAGGAGAATAATGGGGGAGGATCTGAATCGGGGAGGGTGAAGGATTATGTGATGGAGTGGATTGGGAGTGAGATAAAGAAAGAGAGACCAAAGAGTAGTGAGTGGGTTGGTTCTGGTTCTTCGATTTGTTCCGGTGGTGGTGGTGATGTGGTTGCAGCGCAGTCGAAGGTGGAGGGTAAGAAGAAGCAGAGGAAGAAATTGGAATGGTGGGCTTCACTTGATGAGGAGAAAGTTAAAGGAAAGAAGAATAGGAAACCAAGGGAATGGTGGAAGGAGGAGTTTTGTGAAGAGCTTTCCAAGAAGAGTAGGAAGAAAAAGAGAAGCCTTGATTGTCACGGCAATGGCGGGGAATCGTGGTGGCAGAGAGACGAGGATGTAGGCGGCGCGGCGGTAGAGAAGAAGAAAAAGAGAAAGAGTAAGAGTAGTAGAGGGAGTATTGATTGGTGGTTAGATGGTTTAAGCGGCGAGCTTAGGACTAATGGAAGGAGAAATAGTCAAGATTGGGGTAATGGTGATATACCGAAGAGTGGTGGAATAAGTAGCACACCGAGTATGAGAGGAACCGTTTGTTACATTGCTCCTGAATACGGCGGTGGTGGACAATTATCCGAGAAATGTGATGTGTATAGTTTCGGTGTTCTGCTCTTGGTTTTGGTTGCCGGAAGAAGACCGTTACAAGTAACAGCATCACCGATTTCAGAATTTGAGAGAGCAAATCTAATTTCATGGGCTAGACAACTTGCTCATAATGGAAAACTCTTGGATCTTGTTGATAGTTCTATACATTCTTTAGATAAAGAACAAGCATTGCTATGTATCACCATTGCATTGTTGTGTTTGCAGAGATCTCCTGGGAAAAGGCCTTCCATGAAGGAGATTGTAGGAATGCTTTCTGGTGAAGCTGACCCACCTCACTTGCCCTTTGAATTCTCACCTTCACCACCCTCAAATTTCCCTTTCAAATCAAGAAAAAAAGCTAGGTGA

Protein sequence

>MS.gene87830.t1

MPSRPPPPQPLPTIATITPPHHHHHHRREFLIGCLISAAIFLTAAIISLTIFLYRKLSHNRTTPVDQNHRRFSYSILRRASNSFSASTRLGHGGFGSVHKATLPSGETVALKVMDSPGSIQGEREFHNELSLCSNLRSPFILSLLGYSSDRSGRKLVLVYELMSNRSLQDALLDRRCDELMVWSNRFDVVVSVAKGLEYLHHECNPPVIHGDIKPSNVLLDREFRAKIGDFGLARVKCLEDSGMEMMVEEIHHHHHEKKKKKDDFVVVGGVNEDCSSVSVVEEFESAVSVTNTTAGNDIDRSPESCNVRVLVDSDASPEVAIVSQSSVVSDGCFDKFSIDSGNQRKRGGGGGGGSGRDWWWKQENNGGGSESGRVKDYVMEWIGSEIKKERPKSSEWVGSGSSICSGGGGDVVAAQSKVEGKKKQRKKLEWWASLDEEKVKGKKNRKPREWWKEEFCEELSKKSRKKKRSLDCHGNGGESWWQRDEDVGGAAVEKKKKRKSKSSRGSIDWWLDGLSGELRTNGRRNSQDWGNGDIPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGKLLDLVDSSIHSLDKEQALLCITIALLCLQRSPGKRPSMKEIVGMLSGEADPPHLPFEFSPSPPSNFPFKSRKKAR