AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87913.t1 MTR_6g027690 79.626 481 38 5 1 478 1 424 0.0 656
MS.gene87913.t1 MTR_5g018850 35.196 179 113 3 296 473 1330 1506 1.31e-20 95.9
MS.gene87913.t1 MTR_4g132610 36.667 180 109 4 296 473 870 1046 6.92e-20 93.6
MS.gene87913.t1 MTR_1g069570 32.500 160 102 3 295 451 563 719 3.39e-19 91.3
MS.gene87913.t1 MTR_8g078490 33.889 180 114 4 296 473 1076 1252 3.92e-19 91.3
MS.gene87913.t1 MTR_7g088370 31.004 229 132 8 267 471 476 702 5.66e-19 90.5
MS.gene87913.t1 MTR_7g098390 34.161 161 98 4 295 451 519 675 2.84e-18 88.2
MS.gene87913.t1 MTR_1g080340 34.756 164 94 4 295 451 402 559 7.66e-18 86.7
MS.gene87913.t1 MTR_8g078505 34.254 181 101 6 296 469 364 533 1.15e-17 85.9
MS.gene87913.t1 MTR_5g013420 29.876 241 124 10 272 473 854 1088 3.16e-17 85.5
MS.gene87913.t1 MTR_5g013420 29.876 241 124 10 272 473 854 1088 4.83e-17 84.7
MS.gene87913.t1 MTR_3g088625 32.161 199 108 9 279 473 1289 1464 1.78e-16 83.2
MS.gene87913.t1 MTR_4g010830 28.631 241 127 9 272 473 745 979 1.91e-16 82.8
MS.gene87913.t1 MTR_3g088625 32.161 199 108 9 279 473 1183 1358 2.18e-16 82.8
MS.gene87913.t1 MTR_1g035420 26.244 221 137 6 270 465 440 659 5.50e-15 77.8
MS.gene87913.t1 MTR_6g059310 28.505 214 126 8 270 476 63 256 1.60e-14 75.1
MS.gene87913.t1 MTR_6g059310 28.505 214 126 8 270 476 63 256 1.68e-14 75.1
MS.gene87913.t1 MTR_1g012890 31.410 156 89 6 322 473 226 367 3.13e-14 74.3
MS.gene87913.t1 MTR_4g010550 26.840 231 128 7 272 473 245 463 7.84e-14 73.9
MS.gene87913.t1 MTR_1g069570 35.043 117 72 2 295 410 563 676 1.04e-13 73.9
MS.gene87913.t1 MTR_8g070075 28.019 207 119 7 272 451 546 749 2.69e-13 72.8
MS.gene87913.t1 MTR_0071s0100 26.592 267 160 10 216 476 115 351 6.66e-13 70.5
MS.gene87913.t1 MTR_1g035400 26.364 220 134 7 272 465 361 578 9.88e-13 70.9
MS.gene87913.t1 MTR_1g098000 28.780 205 117 7 273 469 47 230 1.07e-12 70.5
MS.gene87913.t1 MTR_1g012910 29.032 155 92 6 323 473 530 670 1.95e-12 70.1
MS.gene87913.t1 MTR_1g098370 26.957 230 127 9 255 469 30 233 2.34e-12 69.3
MS.gene87913.t1 MTR_1g012910 29.032 155 92 6 323 473 367 507 2.54e-12 69.3
MS.gene87913.t1 MTR_1g048950 31.330 233 119 11 269 478 323 537 1.05e-11 67.4
MS.gene87913.t1 MTR_6g061200 32.195 205 94 12 272 451 451 635 6.77e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87913.t1 AT3G03750 58.667 225 81 4 265 478 131 354 5.34e-79 250
MS.gene87913.t1 AT3G03750 31.852 135 78 3 12 136 16 146 1.67e-13 72.0
MS.gene87913.t1 AT3G03750 54.222 225 75 5 265 478 131 338 1.12e-67 220
MS.gene87913.t1 AT3G03750 31.852 135 78 3 12 136 16 146 1.24e-13 72.4
MS.gene87913.t1 AT1G04050 33.333 162 101 3 292 451 436 592 2.88e-19 91.3
MS.gene87913.t1 AT1G04050 32.275 189 119 4 267 451 513 696 5.41e-19 90.5
MS.gene87913.t1 AT1G04050 32.275 189 119 4 267 451 513 696 5.41e-19 90.5
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 252 407 6.05e-18 86.7
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 252 407 6.59e-18 86.7
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 236 391 6.75e-18 86.3
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 279 434 7.41e-18 86.7
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 279 434 7.63e-18 86.7
MS.gene87913.t1 AT3G04380 32.911 158 102 2 295 450 263 418 8.51e-18 86.3
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 458 610 4.28e-17 84.7
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 458 610 4.28e-17 84.7
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 458 610 4.28e-17 84.7
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 458 610 4.28e-17 84.7
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 438 590 5.24e-17 84.3
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 550 702 8.17e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 550 702 8.17e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 527 679 8.35e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 527 679 8.35e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 527 679 8.35e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 527 679 8.35e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 507 659 8.47e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 507 659 8.47e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 507 659 8.47e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 507 659 8.47e-17 84.0
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 530 682 8.91e-17 83.6
MS.gene87913.t1 AT5G43990 32.075 159 100 3 295 451 530 682 8.91e-17 83.6
MS.gene87913.t1 AT1G73100 30.417 240 129 10 271 473 430 668 1.08e-16 83.6
MS.gene87913.t1 AT2G33290 28.507 221 127 8 272 465 435 651 2.92e-16 82.0
MS.gene87913.t1 AT2G33290 28.507 221 127 8 272 465 435 651 2.92e-16 82.0
MS.gene87913.t1 AT2G33290 28.507 221 127 8 272 465 435 651 2.92e-16 82.0
MS.gene87913.t1 AT2G33290 28.507 221 127 8 272 465 435 651 2.92e-16 82.0
MS.gene87913.t1 AT4G30860 28.455 246 139 10 240 473 244 464 1.09e-15 79.7
MS.gene87913.t1 AT4G13460 29.245 212 132 6 270 465 441 650 6.74e-15 77.8
MS.gene87913.t1 AT4G13460 29.245 212 132 6 270 465 441 650 6.74e-15 77.8
MS.gene87913.t1 AT2G35160 25.610 246 123 10 255 473 581 793 2.50e-14 76.3
MS.gene87913.t1 AT2G35160 25.610 246 123 10 255 473 581 793 2.50e-14 76.3
MS.gene87913.t1 AT2G35160 25.610 246 123 10 255 473 581 793 2.50e-14 76.3
MS.gene87913.t1 AT2G35160 25.610 246 123 10 255 473 581 793 2.50e-14 76.3
MS.gene87913.t1 AT2G35160 25.610 246 123 10 255 473 545 757 2.96e-14 75.9
MS.gene87913.t1 AT1G76710 28.708 209 120 7 273 473 41 228 3.59e-14 75.1
MS.gene87913.t1 AT1G76710 28.708 209 120 7 273 473 41 228 3.59e-14 75.1
MS.gene87913.t1 AT1G76710 28.708 209 120 7 273 473 41 228 4.06e-14 75.1
MS.gene87913.t1 AT1G76710 28.708 209 120 7 273 473 41 228 4.08e-14 75.1
MS.gene87913.t1 AT5G04940 30.808 198 115 7 296 473 474 669 5.10e-14 75.1
MS.gene87913.t1 AT5G04940 30.808 198 115 7 296 473 474 669 5.10e-14 75.1
MS.gene87913.t1 AT2G22740 30.303 198 116 7 296 473 594 789 1.80e-13 73.6
MS.gene87913.t1 AT2G22740 30.303 198 116 7 296 473 594 789 1.80e-13 73.6
MS.gene87913.t1 AT1G77300 29.146 199 114 9 279 473 991 1166 1.28e-12 71.2
MS.gene87913.t1 AT1G77300 29.146 199 114 9 279 473 991 1166 1.64e-12 70.9
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0
MS.gene87913.t1 AT5G42400 31.724 145 79 7 331 473 1261 1387 2.05e-11 67.0

Find 162 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATTTGGGTGAGTTTA+TGG 0.200584 6.1:-10081739 None:intergenic
GGGTTAGATATGGTAGAATT+AGG 0.206484 6.1:-10081676 None:intergenic
AGCACCCCATGGTTGATAAT+TGG 0.206933 6.1:-10081897 None:intergenic
TTTGAAGGTGTTTGTGATAA+TGG 0.215244 6.1:+10081980 MS.gene87913:CDS
AATGGGTCAGTGGGAGGTGG+TGG 0.235251 6.1:+10081998 MS.gene87913:CDS
GATGGGTCTGTGGGAGATGG+TGG 0.241518 6.1:+10082208 MS.gene87913:CDS
ATGGGGTTTGTTTGCGAATC+AGG 0.258812 6.1:+10082579 MS.gene87913:CDS
GTCAAAATGGGGTTAATGTT+AGG 0.261254 6.1:+10082524 MS.gene87913:CDS
TTTGATGTCGGCTGTGAAAA+TGG 0.282379 6.1:+10082292 MS.gene87913:CDS
GGGTCAGTGGGAGGTGGTGG+GGG 0.294976 6.1:+10082001 MS.gene87913:CDS
GGGAATAGGGTGAGTCAAAA+TGG 0.296690 6.1:+10082511 MS.gene87913:CDS
ATTGCTGCTACTCGATTTCC+TGG 0.299858 6.1:-10081600 None:intergenic
GGTGTGGTGGTGGGAAAGGA+TGG 0.325731 6.1:+10082560 MS.gene87913:CDS
GCACCCCATGGTTGATAATT+GGG 0.332864 6.1:-10081896 None:intergenic
TATGGAGTGATTTGCAGGTT+AGG 0.334668 6.1:-10081721 None:intergenic
TGCGACGGAGGGTGATGATT+TGG 0.335813 6.1:-10081751 None:intergenic
ATGGAGTGATTTGCAGGTTA+GGG 0.339447 6.1:-10081720 None:intergenic
GAGTTTATGGAGTGATTTGC+AGG 0.342943 6.1:-10081726 None:intergenic
AGGAGGGTTGTTGTTGTTGA+TGG 0.349153 6.1:-10081825 None:intergenic
TGTGGGCTGGGTTGTTTATG+TGG 0.352457 6.1:+10082478 MS.gene87913:CDS
GTGGGAGGGAGTGTGGGAAT+AGG 0.355883 6.1:+10082497 MS.gene87913:CDS
GGGTCTGTGGGAGATGGTGG+GGG 0.359874 6.1:+10082211 MS.gene87913:CDS
TGGGTCTGTGGGAGATGGTG+GGG 0.360670 6.1:+10082210 MS.gene87913:CDS
GGTTAGATATGGTAGAATTA+GGG 0.360685 6.1:-10081675 None:intergenic
TTGTTGATGGTGTTGAGAAA+TGG 0.363547 6.1:-10081812 None:intergenic
TGTTTATGTGGGAGGGAGTG+TGG 0.364351 6.1:+10082490 MS.gene87913:CDS
TGGGTCAGTGGGAGGTGGTG+GGG 0.366424 6.1:+10082000 MS.gene87913:CDS
GTGGGCTGGGTTGTTTATGT+GGG 0.366645 6.1:+10082479 MS.gene87913:CDS
TCATCATCGTCAACCGTTCT+AGG 0.372941 6.1:-10082361 None:intergenic
TTGAAGGTGTTTGTGATAAT+GGG 0.374671 6.1:+10081981 MS.gene87913:CDS
TGCAACAGCCTTTCTTGCCT+TGG 0.379800 6.1:+10084628 MS.gene87913:CDS
TGGGAGGGAGTGTGGGAATA+GGG 0.381770 6.1:+10082498 MS.gene87913:CDS
CGCATGAATGATTTACAAAC+CGG 0.393320 6.1:-10084453 None:intergenic
GGAATAGGGTGAGTCAAAAT+GGG 0.393994 6.1:+10082512 MS.gene87913:CDS
AATTCTCTCATTTCAGATGA+TGG 0.394264 6.1:+10081929 MS.gene87913:CDS
ATGGGTCTGTGGGAGATGGT+GGG 0.396576 6.1:+10082209 MS.gene87913:CDS
AAGGTGTCTGTGATGATGGT+GGG 0.397856 6.1:+10082095 MS.gene87913:CDS
ATGTTAGGGTTAAGATTGTA+TGG 0.402236 6.1:+10082539 MS.gene87913:CDS
TTTGATGGGGTTGATGGTAT+TGG 0.404345 6.1:+10082448 MS.gene87913:CDS
GTGTGGTGGTGGGAAAGGAT+GGG 0.406058 6.1:+10082561 MS.gene87913:CDS
ATTGGAAGAGAGTGTGGGCT+GGG 0.407013 6.1:+10082466 MS.gene87913:CDS
GATCATGGGTCAGTGAGTTT+TGG 0.410291 6.1:+10082061 MS.gene87913:CDS
ACTCACTGACCCATGATCAT+TGG 0.410621 6.1:-10082056 None:intergenic
AATGGGAAGGTGGGAGGCAG+TGG 0.411038 6.1:+10082310 MS.gene87913:CDS
TGTGGTGGTGGGAAAGGATG+GGG 0.412443 6.1:+10082562 MS.gene87913:CDS
TTGATCGCTCTAGGCGGAAT+TGG 0.412949 6.1:-10082250 None:intergenic
GTGTATAGAAAGTAGGAGTA+AGG 0.416895 6.1:-10081845 None:intergenic
ATGGGTCAGTGGGAGGTGGT+GGG 0.418806 6.1:+10081999 MS.gene87913:CDS
AAGATTGTATGGTGTGGTGG+TGG 0.420334 6.1:+10082550 MS.gene87913:CDS
ATTCCGCCGGTTGATGAAGT+TGG 0.420784 6.1:+10082139 MS.gene87913:CDS
TTCCGCCGGTTGATGAAGTT+GGG 0.426029 6.1:+10082140 MS.gene87913:CDS
TGTTGATGGTGTTGAGAAAT+GGG 0.426613 6.1:-10081811 None:intergenic
GTTTATGTGGGAGGGAGTGT+GGG 0.429146 6.1:+10082491 MS.gene87913:CDS
GGAAGGTGTGTATAGAAAGT+AGG 0.432399 6.1:-10081852 None:intergenic
TCAAAATGGGGTTAATGTTA+GGG 0.434140 6.1:+10082525 MS.gene87913:CDS
CCACCACCGCCCAATGATCA+TGG 0.436902 6.1:+10082046 MS.gene87913:CDS
ACAACAACATTATGATGAAC+TGG 0.439102 6.1:+10084321 MS.gene87913:CDS
GGCTGGGTTGTTTATGTGGG+AGG 0.444900 6.1:+10082482 MS.gene87913:CDS
ACCGGCCCAACTTCATCAAC+CGG 0.447528 6.1:-10082145 None:intergenic
GATGATGGGTCGGTGAGATT+TGG 0.451262 6.1:+10081944 MS.gene87913:CDS
GAAGTTGGGCCGGTGAAGTT+TGG 0.452392 6.1:+10082154 MS.gene87913:CDS
CTCACTGACCCATGATCATT+GGG 0.455864 6.1:-10082055 None:intergenic
GCGACGGAGGGTGATGATTT+GGG 0.460306 6.1:-10081750 None:intergenic
GATAATGGGTCAGTGGGAGG+TGG 0.462414 6.1:+10081995 MS.gene87913:CDS
TGTGAAGGTGTCTGTGATGA+TGG 0.467165 6.1:+10082091 MS.gene87913:CDS
GTATGGTGTGGTGGTGGGAA+AGG 0.470460 6.1:+10082556 MS.gene87913:CDS
AATTATCAACCATGGGGTGC+TGG 0.471919 6.1:+10081899 MS.gene87913:CDS
GCTGGGTTGTTTATGTGGGA+GGG 0.473425 6.1:+10082483 MS.gene87913:CDS
GGGAAGGTGGGAGGCAGTGG+TGG 0.474291 6.1:+10082313 MS.gene87913:CDS
GCAGTGACACGGCCGCCCAT+TGG 0.475968 6.1:-10084608 None:intergenic
TTTCAAGGTGTATGTGATGA+TGG 0.478220 6.1:+10082190 MS.gene87913:CDS
CTCAAACATGCCTTTCCTGA+TGG 0.478841 6.1:-10084394 None:intergenic
GATGATGGGTCTGTGGGAGA+TGG 0.479549 6.1:+10082205 MS.gene87913:CDS
GAAGGTGTCTGTGATGATGG+TGG 0.479890 6.1:+10082094 MS.gene87913:CDS
GTAAGGGAACATCTTCCATC+AGG 0.484888 6.1:+10084379 MS.gene87913:CDS
TATAGAAAGTAGGAGTAAGG+AGG 0.488395 6.1:-10081842 None:intergenic
CCATGATCATTGGGCGGTGG+TGG 0.490387 6.1:-10082046 None:intergenic
GAGTTCTTGTTTCAATATGC+AGG 0.491591 6.1:+10082616 MS.gene87913:CDS
GATGATGACTCAGTGAGATT+TGG 0.499430 6.1:+10082376 MS.gene87913:CDS
AACTTTCAAGTGTCTTCTGA+GGG 0.512350 6.1:-10084658 None:intergenic
CAACTTTCAAGTGTCTTCTG+AGG 0.513305 6.1:-10084659 None:intergenic
ATAGAAAGTAGGAGTAAGGA+GGG 0.513373 6.1:-10081841 None:intergenic
GCAATGTTCCAAGGCAAGAA+AGG 0.514478 6.1:-10084636 None:intergenic
GAATCAGGTTGTTCGTAAAG+AGG 0.515528 6.1:+10082594 MS.gene87913:CDS
GCCGGTTGATGAAGTTGGGC+CGG 0.518021 6.1:+10082144 MS.gene87913:CDS
ATTCTCTCATTTCAGATGAT+GGG 0.519161 6.1:+10081930 MS.gene87913:CDS
CAACCATGGGGTGCTGGAGA+GGG 0.524783 6.1:+10081905 MS.gene87913:CDS
AGTTGTGTGTGGGTTAGATA+TGG 0.525928 6.1:-10081686 None:intergenic
AGGTGTCTGTGATGATGGTG+GGG 0.526062 6.1:+10082096 MS.gene87913:CDS
CACCCCATGGTTGATAATTG+GGG 0.526836 6.1:-10081895 None:intergenic
TATTGGAAGAGAGTGTGGGC+TGG 0.532478 6.1:+10082465 MS.gene87913:CDS
AGATGTTGGCGAGTTGTGTG+TGG 0.533165 6.1:-10081697 None:intergenic
TTCACCAATGCCGCCTAGAA+CGG 0.533827 6.1:+10082348 MS.gene87913:CDS
GGGTGTTGTGAGAGAGAATG+AGG 0.533858 6.1:-10081874 None:intergenic
AGTAATTTCACTAATTCCGC+CGG 0.536149 6.1:+10082126 MS.gene87913:CDS
TTTGCAGGTTAGGGAGATGT+TGG 0.542214 6.1:-10081711 None:intergenic
AAATCAGGAAAAGGTCCAAT+GGG 0.543500 6.1:+10084593 MS.gene87913:CDS
TCAACCATGGGGTGCTGGAG+AGG 0.544302 6.1:+10081904 MS.gene87913:CDS
GGGCCGGTGAAGTTTGGTGT+TGG 0.548634 6.1:+10082160 MS.gene87913:CDS
GGCTGTGAAAATGGGAAGGT+GGG 0.549330 6.1:+10082301 MS.gene87913:CDS
GCTATGGAGAAATCAGGAAA+AGG 0.549928 6.1:+10084584 MS.gene87913:CDS
TTTGTAAATCATTCATGCGA+TGG 0.552323 6.1:+10084457 MS.gene87913:CDS
TCAACCGTTCTAGGCGGCAT+TGG 0.553131 6.1:-10082352 None:intergenic
GTTAAGATTGTATGGTGTGG+TGG 0.553358 6.1:+10082547 MS.gene87913:CDS
GGGTCGGTGAGATTTGGTGT+TGG 0.554917 6.1:+10081950 MS.gene87913:CDS
TGTGATAATGGGTCAGTGGG+AGG 0.555074 6.1:+10081992 MS.gene87913:CDS
ATGGTGTTGAGAAATGGGAT+TGG 0.561886 6.1:-10081806 None:intergenic
TTGATGTCGGCTGTGAAAAT+GGG 0.561974 6.1:+10082293 MS.gene87913:CDS
AGCGATCAATGATGAGGGAT+CGG 0.563609 6.1:+10082264 MS.gene87913:CDS
GTTTGTGATAATGGGTCAGT+GGG 0.571580 6.1:+10081989 MS.gene87913:CDS
CTCAAAGGTTCGAGAAGCGT+CGG 0.576551 6.1:-10081777 None:intergenic
GATGTTGGCGAGTTGTGTGT+GGG 0.577849 6.1:-10081696 None:intergenic
TGTGAAAATGGGAAGGTGGG+AGG 0.578139 6.1:+10082304 MS.gene87913:CDS
GAAAGGCTGTTGCAGTGACA+CGG 0.578224 6.1:-10084619 None:intergenic
GGTGTTGTGAGAGAGAATGA+GGG 0.579242 6.1:-10081873 None:intergenic
GAAATCAGGAAAAGGTCCAA+TGG 0.584950 6.1:+10084592 MS.gene87913:CDS
CCCTCATCATTGATCGCTCT+AGG 0.585223 6.1:-10082259 None:intergenic
GTATGTGATGATGGGTCTGT+GGG 0.586844 6.1:+10082199 MS.gene87913:CDS
AGGGTTAAGATTGTATGGTG+TGG 0.589173 6.1:+10082544 MS.gene87913:CDS
CTTCTGAGGGCAATGTTCCA+AGG 0.591471 6.1:-10084645 None:intergenic
CATCCAACACCAAACTTCAC+CGG 0.591738 6.1:-10082163 None:intergenic
GATGGTATTGGAAGAGAGTG+TGG 0.592186 6.1:+10082460 MS.gene87913:CDS
AAGCGTCGGAGATGCGACGG+AGG 0.595383 6.1:-10081763 None:intergenic
AGATTGTATGGTGTGGTGGT+GGG 0.598218 6.1:+10082551 MS.gene87913:CDS
GTAAATCATTCATGCGATGG+TGG 0.599638 6.1:+10084460 MS.gene87913:CDS
TGTATGTGATGATGGGTCTG+TGG 0.599715 6.1:+10082198 MS.gene87913:CDS
TTGTCTCCTCTGTGCTTCCG+TGG 0.600236 6.1:-10084302 None:intergenic
GGTGTCTGTGATGATGGTGG+GGG 0.600282 6.1:+10082097 MS.gene87913:CDS
GAGAAGCGTCGGAGATGCGA+CGG 0.600331 6.1:-10081766 None:intergenic
ATGGTATTGGAAGAGAGTGT+GGG 0.600749 6.1:+10082461 MS.gene87913:CDS
TTCAAGGTGTATGTGATGAT+GGG 0.600792 6.1:+10082191 MS.gene87913:CDS
CACCACCGCCCAATGATCAT+GGG 0.601569 6.1:+10082047 MS.gene87913:CDS
CGGCTGTGAAAATGGGAAGG+TGG 0.602479 6.1:+10082300 MS.gene87913:CDS
TTGCTGCTACTCGATTTCCT+GGG 0.607135 6.1:-10081599 None:intergenic
GACCCATGATCATTGGGCGG+TGG 0.608657 6.1:-10082049 None:intergenic
TGGGATTGGATGATTCTCAA+AGG 0.608658 6.1:-10081792 None:intergenic
TCTCATTTCAGATGATGGGT+CGG 0.616876 6.1:+10081934 MS.gene87913:CDS
CCTAGAGCGATCAATGATGA+GGG 0.616958 6.1:+10082259 MS.gene87913:CDS
TATGATGAACTGGCATCGCG+TGG 0.618128 6.1:+10084331 MS.gene87913:CDS
GGAACATCTTCCATCAGGAA+AGG 0.618170 6.1:+10084384 MS.gene87913:CDS
GCCTAGAGCGATCAATGATG+AGG 0.620250 6.1:+10082258 MS.gene87913:CDS
AGCGTCGGAGATGCGACGGA+GGG 0.627600 6.1:-10081762 None:intergenic
AGGAAATCGAGTAGCAGCAA+TGG 0.633956 6.1:+10081602 MS.gene87913:CDS
TTGTGAGAGAGAATGAGGGA+AGG 0.639314 6.1:-10081869 None:intergenic
TTACCCTCTCCAGCACCCCA+TGG 0.643090 6.1:-10081908 None:intergenic
GACTCAGTGAGATTTGGTGT+GGG 0.645287 6.1:+10082382 MS.gene87913:CDS
GGTGTGGGATGTGAGTGTGA+AGG 0.647547 6.1:+10082397 MS.gene87913:CDS
CCACACAGATGAAGATACCC+AGG 0.648722 6.1:+10081582 None:intergenic
GAATAGGGTGAGTCAAAATG+GGG 0.650157 6.1:+10082513 MS.gene87913:CDS
ACCCCATGGTTGATAATTGG+GGG 0.658176 6.1:-10081894 None:intergenic
TCAGGAAAAGGTCCAATGGG+CGG 0.668437 6.1:+10084596 MS.gene87913:CDS
GCATGAATGATTTACAAACC+GGG 0.668682 6.1:-10084452 None:intergenic
GGCCCAACTTCATCAACCGG+CGG 0.669512 6.1:-10082142 None:intergenic
TGTTTGTGATAATGGGTCAG+TGG 0.672547 6.1:+10081988 MS.gene87913:CDS
TCATCGTCAACCGTTCTAGG+CGG 0.675310 6.1:-10082358 None:intergenic
TGACTCAGTGAGATTTGGTG+TGG 0.677273 6.1:+10082381 MS.gene87913:CDS
GGATCGGTGAGATTTGATGT+CGG 0.688756 6.1:+10082280 MS.gene87913:CDS
AGGTGAACTACTGACAACCA+CGG 0.715721 6.1:+10084285 MS.gene87913:intron
TGTCGGCTGTGAAAATGGGA+AGG 0.718334 6.1:+10082297 MS.gene87913:CDS
ACTGACCCATGATCATTGGG+CGG 0.720456 6.1:-10082052 None:intergenic
TCATCATTGATCGCTCTAGG+CGG 0.724077 6.1:-10082256 None:intergenic
TGACAACCACGGAAGCACAG+AGG 0.752462 6.1:+10084296 MS.gene87913:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTAATTTTTAGGTA+TGG + chr6.1:10083079-10083098 MS.gene87913:intron 10.0%
!!! TATGTAAAAAGTTACTTTAT+AGG + chr6.1:10083569-10083588 MS.gene87913:intron 15.0%
!!! TGTATTTAAGTTAATAGTTA+AGG + chr6.1:10083740-10083759 MS.gene87913:intron 15.0%
!! AAAACTTAATATTTCACTCA+AGG - chr6.1:10083458-10083477 None:intergenic 20.0%
!! AAACTTAATATTTCACTCAA+GGG - chr6.1:10083457-10083476 None:intergenic 20.0%
!! ATCTTAACAAGCTAATAATT+AGG - chr6.1:10083506-10083525 None:intergenic 20.0%
!! GATCAATTCTAAATTTCTAA+TGG - chr6.1:10082867-10082886 None:intergenic 20.0%
!! TCTTAACAAGCTAATAATTA+GGG - chr6.1:10083505-10083524 None:intergenic 20.0%
!! TTATCAAATATGAGTCTATT+TGG + chr6.1:10083839-10083858 MS.gene87913:intron 20.0%
!!! ATATTTTAGTATTTTTGCGT+AGG + chr6.1:10082716-10082735 MS.gene87913:intron 20.0%
!!! TAACTTAAATACAAAAGTAC+AGG - chr6.1:10083733-10083752 None:intergenic 20.0%
! ATGAAAAACCAGAAAATACT+TGG - chr6.1:10083283-10083302 None:intergenic 25.0%
! GACTAATATAGAGATTTGAA+AGG + chr6.1:10083778-10083797 MS.gene87913:intron 25.0%
! GTGATTGTTTGATTGATTAT+AGG + chr6.1:10082671-10082690 MS.gene87913:intron 25.0%
! TGATTATAGGATTGTAACAT+TGG + chr6.1:10082684-10082703 MS.gene87913:intron 25.0%
! TTTATACTATAGTAGGAACA+CGG + chr6.1:10083613-10083632 MS.gene87913:intron 25.0%
!! ATCAGAATTATTCACCTTTT+GGG - chr6.1:10083189-10083208 None:intergenic 25.0%
!! ATGCTTGCAAAATTAATTTG+CGG + chr6.1:10084247-10084266 MS.gene87913:intron 25.0%
!! ATTTAGAATTGATCCGAATT+TGG + chr6.1:10082873-10082892 MS.gene87913:intron 25.0%
!! CTTTAGTTCATAAGCATATA+TGG - chr6.1:10084104-10084123 None:intergenic 25.0%
!!! AAGTAAGCTCTTCATTTTTT+TGG - chr6.1:10084561-10084580 None:intergenic 25.0%
!!! AGTGTATGTGTTTTTTTGAT+GGG + chr6.1:10082434-10082453 MS.gene87913:CDS 25.0%
!!! CAAAATTTTAGCACCAAATT+CGG - chr6.1:10082889-10082908 None:intergenic 25.0%
!!! GTATTTTCTGGTTTTTCATA+CGG + chr6.1:10083284-10083303 MS.gene87913:intron 25.0%
!!! TTATTAGCTTGTTAAGATGA+TGG + chr6.1:10083508-10083527 MS.gene87913:intron 25.0%
!!! TTTGTTTTCATAAGCTGTTT+CGG - chr6.1:10083970-10083989 None:intergenic 25.0%
AACATAGACGCAACAAAAAT+AGG + chr6.1:10084421-10084440 MS.gene87913:CDS 30.0%
AATACGTTGAAAACAGCTTA+TGG - chr6.1:10083935-10083954 None:intergenic 30.0%
AATTCTCTCATTTCAGATGA+TGG + chr6.1:10081929-10081948 MS.gene87913:CDS 30.0%
ACAACAACATTATGATGAAC+TGG + chr6.1:10084321-10084340 MS.gene87913:CDS 30.0%
ATGTTAGGGTTAAGATTGTA+TGG + chr6.1:10082539-10082558 MS.gene87913:CDS 30.0%
ATTCTCTCATTTCAGATGAT+GGG + chr6.1:10081930-10081949 MS.gene87913:CDS 30.0%
CAAATTGCAATATGTTGAGT+AGG + chr6.1:10083679-10083698 MS.gene87913:intron 30.0%
GGTTAGATATGGTAGAATTA+GGG - chr6.1:10081678-10081697 None:intergenic 30.0%
TCAAAATGGGGTTAATGTTA+GGG + chr6.1:10082525-10082544 MS.gene87913:CDS 30.0%
TTAATATTTCACTCAAGGGA+AGG - chr6.1:10083453-10083472 None:intergenic 30.0%
TTATACTATAGTAGGAACAC+GGG + chr6.1:10083614-10083633 MS.gene87913:intron 30.0%
TTGAATTTGAACGTGGAATT+TGG + chr6.1:10082745-10082764 MS.gene87913:intron 30.0%
TTTGTAAATCATTCATGCGA+TGG + chr6.1:10084457-10084476 MS.gene87913:CDS 30.0%
! AATTTTGCAAGCATTTGTGT+AGG - chr6.1:10084241-10084260 None:intergenic 30.0%
! ATTTTGCAAGCATTTGTGTA+GGG - chr6.1:10084240-10084259 None:intergenic 30.0%
! CATCAGAATTATTCACCTTT+TGG - chr6.1:10083190-10083209 None:intergenic 30.0%
! GAAATCATAAAGTGCTTGTT+TGG + chr6.1:10082947-10082966 MS.gene87913:intron 30.0%
! TTGTTAAGATGATGGTCTAT+AGG + chr6.1:10083516-10083535 MS.gene87913:intron 30.0%
! TTTGCTATGTTAAGGTGATT+GGG + chr6.1:10084160-10084179 MS.gene87913:intron 30.0%
! TTTTGTTCTACTTGAGAATG+TGG - chr6.1:10083398-10083417 None:intergenic 30.0%
!! AATTGATTTTGCCTTCTAAG+TGG - chr6.1:10083657-10083676 None:intergenic 30.0%
!! ATTGATTTTGCCTTCTAAGT+GGG - chr6.1:10083656-10083675 None:intergenic 30.0%
!! GATTGATTTGAATTTGAACG+TGG + chr6.1:10082738-10082757 MS.gene87913:intron 30.0%
!! TTATAGGTGCTCTAAGAAAT+CGG + chr6.1:10083585-10083604 MS.gene87913:intron 30.0%
!! TTGAAGGTGTTTGTGATAAT+GGG + chr6.1:10081981-10082000 MS.gene87913:CDS 30.0%
!! TTTGAAGGTGTTTGTGATAA+TGG + chr6.1:10081980-10081999 MS.gene87913:CDS 30.0%
!!! GAGTGTATGTGTTTTTTTGA+TGG + chr6.1:10082433-10082452 MS.gene87913:CDS 30.0%
!!! GTGTATGTGTTTTTTTGATG+GGG + chr6.1:10082435-10082454 MS.gene87913:CDS 30.0%
!!! GTGTTTTTGTGTTTTAGAGT+TGG + chr6.1:10082831-10082850 MS.gene87913:intron 30.0%
AAATCAGGAAAAGGTCCAAT+GGG + chr6.1:10084593-10084612 MS.gene87913:CDS 35.0%
AAGAACATAACAGACCCAAA+AGG + chr6.1:10083172-10083191 MS.gene87913:intron 35.0%
AATTTGAACGTGGAATTTGG+AGG + chr6.1:10082748-10082767 MS.gene87913:intron 35.0%
ACCTTAACATAGCAAACACT+AGG - chr6.1:10084156-10084175 None:intergenic 35.0%
AGTAATTTCACTAATTCCGC+CGG + chr6.1:10082126-10082145 MS.gene87913:CDS 35.0%
ATAGAAAGTAGGAGTAAGGA+GGG - chr6.1:10081844-10081863 None:intergenic 35.0%
CAAAAATAGGAAATGTTGCC+CGG + chr6.1:10084434-10084453 MS.gene87913:CDS 35.0%
CGCATGAATGATTTACAAAC+CGG - chr6.1:10084456-10084475 None:intergenic 35.0%
GAATCATACCAACAAGTTGT+TGG - chr6.1:10083325-10083344 None:intergenic 35.0%
GCATGAATGATTTACAAACC+GGG - chr6.1:10084455-10084474 None:intergenic 35.0%
GGGTTAGATATGGTAGAATT+AGG - chr6.1:10081679-10081698 None:intergenic 35.0%
GTCAAAATGGGGTTAATGTT+AGG + chr6.1:10082524-10082543 MS.gene87913:CDS 35.0%
GTGCTTGTTTGGATATATGT+TGG + chr6.1:10082958-10082977 MS.gene87913:intron 35.0%
GTGTATAGAAAGTAGGAGTA+AGG - chr6.1:10081848-10081867 None:intergenic 35.0%
GTTTGGGAAACAACTTATGA+CGG + chr6.1:10083907-10083926 MS.gene87913:intron 35.0%
TATAGAAAGTAGGAGTAAGG+AGG - chr6.1:10081845-10081864 None:intergenic 35.0%
TGGCAATTGAAAATGTACAG+TGG - chr6.1:10083421-10083440 None:intergenic 35.0%
TTAACATAGCAAACACTAGG+AGG - chr6.1:10084153-10084172 None:intergenic 35.0%
TTCAAGGTGTATGTGATGAT+GGG + chr6.1:10082191-10082210 MS.gene87913:CDS 35.0%
TTTCAAGGTGTATGTGATGA+TGG + chr6.1:10082190-10082209 MS.gene87913:CDS 35.0%
TTTGGGAAACAACTTATGAC+GGG + chr6.1:10083908-10083927 MS.gene87913:intron 35.0%
! GAGTTCTTGTTTCAATATGC+AGG + chr6.1:10082616-10082635 MS.gene87913:CDS 35.0%
! GTCTGCTCTTTTAGTAGTAA+GGG + chr6.1:10084363-10084382 MS.gene87913:CDS 35.0%
! TACTTGGTGATCGAATTTAC+CGG - chr6.1:10083267-10083286 None:intergenic 35.0%
! TGATGATTTGGGTGAGTTTA+TGG - chr6.1:10081742-10081761 None:intergenic 35.0%
! TTCGATCACCAAGTATTTTC+TGG + chr6.1:10083272-10083291 MS.gene87913:intron 35.0%
!! ATAAGCGCTGATGTTATAAG+CGG + chr6.1:10084051-10084070 MS.gene87913:intron 35.0%
!! CTTTTAGCTATGGAGAAATC+AGG + chr6.1:10084578-10084597 MS.gene87913:CDS 35.0%
!! GAAGAGCTTACTTTTAGCTA+TGG + chr6.1:10084568-10084587 MS.gene87913:CDS 35.0%
!! GGGAGGTTTTATACTATAGT+AGG + chr6.1:10083606-10083625 MS.gene87913:intron 35.0%
!! GGTGTTGGATGTAATTTTCA+AGG + chr6.1:10082175-10082194 MS.gene87913:CDS 35.0%
!! GTTTGCTATGTTAAGGTGAT+TGG + chr6.1:10084159-10084178 MS.gene87913:intron 35.0%
!! TATAGGTGCTCTAAGAAATC+GGG + chr6.1:10083586-10083605 MS.gene87913:intron 35.0%
!! TCCTAGTGTTTGCTATGTTA+AGG + chr6.1:10084152-10084171 MS.gene87913:intron 35.0%
!! TGTTGATGGTGTTGAGAAAT+GGG - chr6.1:10081814-10081833 None:intergenic 35.0%
!! TTGATAATGTCACCATCTCA+GGG - chr6.1:10083826-10083845 None:intergenic 35.0%
!! TTGTTGATGGTGTTGAGAAA+TGG - chr6.1:10081815-10081834 None:intergenic 35.0%
!! TTTGATAATGTCACCATCTC+AGG - chr6.1:10083827-10083846 None:intergenic 35.0%
!!! TGTTTTTTTGATGGGGTTGA+TGG + chr6.1:10082442-10082461 MS.gene87913:CDS 35.0%
AAGCACTTGTGAGACTGTTT+GGG + chr6.1:10083891-10083910 MS.gene87913:intron 40.0%
AGGGTTAAGATTGTATGGTG+TGG + chr6.1:10082544-10082563 MS.gene87913:CDS 40.0%
CTTTCGAAGCAAAAAAGCAG+AGG - chr6.1:10084534-10084553 None:intergenic 40.0%
GAAATCAGGAAAAGGTCCAA+TGG + chr6.1:10084592-10084611 MS.gene87913:CDS 40.0%
GAATAGGGTGAGTCAAAATG+GGG + chr6.1:10082513-10082532 MS.gene87913:CDS 40.0%
GATGATGACTCAGTGAGATT+TGG + chr6.1:10082376-10082395 MS.gene87913:CDS 40.0%
GCTATGGAGAAATCAGGAAA+AGG + chr6.1:10084584-10084603 MS.gene87913:CDS 40.0%
GGAATAGGGTGAGTCAAAAT+GGG + chr6.1:10082512-10082531 MS.gene87913:CDS 40.0%
GTAAATCATTCATGCGATGG+TGG + chr6.1:10084460-10084479 MS.gene87913:CDS 40.0%
GTACAGGCAGTTTACATCTA+CGG - chr6.1:10083717-10083736 None:intergenic 40.0%
GTTAAGATTGTATGGTGTGG+TGG + chr6.1:10082547-10082566 MS.gene87913:CDS 40.0%
TCAAGGGAAGGTTGTCAAAA+TGG - chr6.1:10083441-10083460 None:intergenic 40.0%
TCTTGTTGCCAACAACTTGT+TGG + chr6.1:10083314-10083333 MS.gene87913:intron 40.0%
TGGGATTGGATGATTCTCAA+AGG - chr6.1:10081795-10081814 None:intergenic 40.0%
! AGATGATGGTCTATAGGTCA+AGG + chr6.1:10083522-10083541 MS.gene87913:intron 40.0%
! ATGGAGTGATTTGCAGGTTA+GGG - chr6.1:10081723-10081742 None:intergenic 40.0%
! ATGGTATTGGAAGAGAGTGT+GGG + chr6.1:10082461-10082480 MS.gene87913:CDS 40.0%
! ATGGTGTTGAGAAATGGGAT+TGG - chr6.1:10081809-10081828 None:intergenic 40.0%
! CGTCTGCTCTTTTAGTAGTA+AGG + chr6.1:10084362-10084381 MS.gene87913:CDS 40.0%
! GAATCAGGTTGTTCGTAAAG+AGG + chr6.1:10082594-10082613 MS.gene87913:CDS 40.0%
! GAGTTTATGGAGTGATTTGC+AGG - chr6.1:10081729-10081748 None:intergenic 40.0%
! GATGATGGTCTATAGGTCAA+GGG + chr6.1:10083523-10083542 MS.gene87913:intron 40.0%
! GGAAGGTGTGTATAGAAAGT+AGG - chr6.1:10081855-10081874 None:intergenic 40.0%
! TATGGAGTGATTTGCAGGTT+AGG - chr6.1:10081724-10081743 None:intergenic 40.0%
! TGATAATGTCACCATCTCAG+GGG - chr6.1:10083825-10083844 None:intergenic 40.0%
! TGCGGTTTTCTGTGTGAAAA+AGG + chr6.1:10084265-10084284 MS.gene87913:intron 40.0%
! TTGATGTCGGCTGTGAAAAT+GGG + chr6.1:10082293-10082312 MS.gene87913:CDS 40.0%
! TTTGATGTCGGCTGTGAAAA+TGG + chr6.1:10082292-10082311 MS.gene87913:CDS 40.0%
!! AGTTGTGTGTGGGTTAGATA+TGG - chr6.1:10081689-10081708 None:intergenic 40.0%
!! GTTTGTGATAATGGGTCAGT+GGG + chr6.1:10081989-10082008 MS.gene87913:CDS 40.0%
!! GTTTTAGCAACCCACTTAGA+AGG + chr6.1:10083643-10083662 MS.gene87913:intron 40.0%
!! TCTCATTTCAGATGATGGGT+CGG + chr6.1:10081934-10081953 MS.gene87913:CDS 40.0%
!! TGTTTGTGATAATGGGTCAG+TGG + chr6.1:10081988-10082007 MS.gene87913:CDS 40.0%
!! TTTGATGGGGTTGATGGTAT+TGG + chr6.1:10082448-10082467 MS.gene87913:CDS 40.0%
!!! AGTTTTGGTGTTGGATGTGA+AGG + chr6.1:10082076-10082095 MS.gene87913:CDS 40.0%
!!! GGTGTTGGTTGTGATTTTGA+AGG + chr6.1:10081965-10081984 MS.gene87913:CDS 40.0%
AAGATTGTATGGTGTGGTGG+TGG + chr6.1:10082550-10082569 MS.gene87913:CDS 45.0%
AATTATCAACCATGGGGTGC+TGG + chr6.1:10081899-10081918 MS.gene87913:CDS 45.0%
ACACCCCCAATTATCAACCA+TGG + chr6.1:10081891-10081910 MS.gene87913:CDS 45.0%
ACCCCCAATTATCAACCATG+GGG + chr6.1:10081893-10081912 MS.gene87913:CDS 45.0%
ACTCACTGACCCATGATCAT+TGG - chr6.1:10082059-10082078 None:intergenic 45.0%
AGATGGACCTGGATTGAACT+TGG - chr6.1:10083231-10083250 None:intergenic 45.0%
AGATTGTATGGTGTGGTGGT+GGG + chr6.1:10082551-10082570 MS.gene87913:CDS 45.0%
AGCGATCAATGATGAGGGAT+CGG + chr6.1:10082264-10082283 MS.gene87913:CDS 45.0%
AGCTCTACCAAGTTCAATCC+AGG + chr6.1:10083221-10083240 MS.gene87913:intron 45.0%
AGGAAATCGAGTAGCAGCAA+TGG + chr6.1:10081602-10081621 MS.gene87913:CDS 45.0%
AGGTGAACTACTGACAACCA+CGG + chr6.1:10084285-10084304 MS.gene87913:intron 45.0%
AGTTCAATCCAGGTCCATCT+AGG + chr6.1:10083231-10083250 MS.gene87913:intron 45.0%
ATAGTAGGAACACGGGTCTT+TGG + chr6.1:10083621-10083640 MS.gene87913:intron 45.0%
ATTGCTGCTACTCGATTTCC+TGG - chr6.1:10081603-10081622 None:intergenic 45.0%
CAAGCACTTGTGAGACTGTT+TGG + chr6.1:10083890-10083909 MS.gene87913:intron 45.0%
CACCCCCAATTATCAACCAT+GGG + chr6.1:10081892-10081911 MS.gene87913:CDS 45.0%
CATCCAACACCAAACTTCAC+CGG - chr6.1:10082166-10082185 None:intergenic 45.0%
CCTAGAGCGATCAATGATGA+GGG + chr6.1:10082259-10082278 MS.gene87913:CDS 45.0%
CTCAAACATGCCTTTCCTGA+TGG - chr6.1:10084397-10084416 None:intergenic 45.0%
CTCACTGACCCATGATCATT+GGG - chr6.1:10082058-10082077 None:intergenic 45.0%
GCAATGTTCCAAGGCAAGAA+AGG - chr6.1:10084639-10084658 None:intergenic 45.0%
GGAACATCTTCCATCAGGAA+AGG + chr6.1:10084384-10084403 MS.gene87913:CDS 45.0%
GGATCGGTGAGATTTGATGT+CGG + chr6.1:10082280-10082299 MS.gene87913:CDS 45.0%
GGGAATAGGGTGAGTCAAAA+TGG + chr6.1:10082511-10082530 MS.gene87913:CDS 45.0%
GTAAGGGAACATCTTCCATC+AGG + chr6.1:10084379-10084398 MS.gene87913:CDS 45.0%
GTCTCACAAGTGCTTGTGTT+AGG - chr6.1:10083886-10083905 None:intergenic 45.0%
GTTCAATCCAGGTCCATCTA+GGG + chr6.1:10083232-10083251 MS.gene87913:intron 45.0%
TCATCATCGTCAACCGTTCT+AGG - chr6.1:10082364-10082383 None:intergenic 45.0%
TCGAAGCAAAAAAGCAGAGG+CGG - chr6.1:10084531-10084550 None:intergenic 45.0%
TTCAATCCAGGTCCATCTAG+GGG + chr6.1:10083233-10083252 MS.gene87913:intron 45.0%
TTGCTGCTACTCGATTTCCT+GGG - chr6.1:10081602-10081621 None:intergenic 45.0%
TTGTGAGAGAGAATGAGGGA+AGG - chr6.1:10081872-10081891 None:intergenic 45.0%
TTTGCAGGTTAGGGAGATGT+TGG - chr6.1:10081714-10081733 None:intergenic 45.0%
! AAGCTGTTTCGGAGAGCTTA+TGG - chr6.1:10083959-10083978 None:intergenic 45.0%
! AGGAGGGTTGTTGTTGTTGA+TGG - chr6.1:10081828-10081847 None:intergenic 45.0%
! ATGGGGTTTGTTTGCGAATC+AGG + chr6.1:10082579-10082598 MS.gene87913:CDS 45.0%
! GATCATGGGTCAGTGAGTTT+TGG + chr6.1:10082061-10082080 MS.gene87913:CDS 45.0%
! GATGGTATTGGAAGAGAGTG+TGG + chr6.1:10082460-10082479 MS.gene87913:CDS 45.0%
! GGTGTTGTGAGAGAGAATGA+GGG - chr6.1:10081876-10081895 None:intergenic 45.0%
! TCATCATTGATCGCTCTAGG+CGG - chr6.1:10082259-10082278 None:intergenic 45.0%
!! AAGGTGTCTGTGATGATGGT+GGG + chr6.1:10082095-10082114 MS.gene87913:CDS 45.0%
!! ACCCCATGGTTGATAATTGG+GGG - chr6.1:10081897-10081916 None:intergenic 45.0%
!! AGCACCCCATGGTTGATAAT+TGG - chr6.1:10081900-10081919 None:intergenic 45.0%
!! CACCCCATGGTTGATAATTG+GGG - chr6.1:10081898-10081917 None:intergenic 45.0%
!! GACTCAGTGAGATTTGGTGT+GGG + chr6.1:10082382-10082401 MS.gene87913:CDS 45.0%
!! GCACCCCATGGTTGATAATT+GGG - chr6.1:10081899-10081918 None:intergenic 45.0%
!! GTATGTGATGATGGGTCTGT+GGG + chr6.1:10082199-10082218 MS.gene87913:CDS 45.0%
!! TGACTCAGTGAGATTTGGTG+TGG + chr6.1:10082381-10082400 MS.gene87913:CDS 45.0%
!! TGTATGTGATGATGGGTCTG+TGG + chr6.1:10082198-10082217 MS.gene87913:CDS 45.0%
!! TGTGAAGGTGTCTGTGATGA+TGG + chr6.1:10082091-10082110 MS.gene87913:CDS 45.0%
!!! CAATTTTATATTTAATTTTT+AGG + chr6.1:10083074-10083093 MS.gene87913:intron 5.0%
AAGCAAAAAAGCAGAGGCGG+GGG - chr6.1:10084528-10084547 None:intergenic 50.0%
ACTGACCCATGATCATTGGG+CGG - chr6.1:10082055-10082074 None:intergenic 50.0%
AGATGTTGGCGAGTTGTGTG+TGG - chr6.1:10081700-10081719 None:intergenic 50.0%
CCCTCATCATTGATCGCTCT+AGG - chr6.1:10082262-10082281 None:intergenic 50.0%
CGAAGCAAAAAAGCAGAGGC+GGG - chr6.1:10084530-10084549 None:intergenic 50.0%
GAAAGGCTGTTGCAGTGACA+CGG - chr6.1:10084622-10084641 None:intergenic 50.0%
GAAGCAAAAAAGCAGAGGCG+GGG - chr6.1:10084529-10084548 None:intergenic 50.0%
GATGTTGGCGAGTTGTGTGT+GGG - chr6.1:10081699-10081718 None:intergenic 50.0%
GCCTAGAGCGATCAATGATG+AGG + chr6.1:10082258-10082277 MS.gene87913:CDS 50.0%
GCTGGGTTGTTTATGTGGGA+GGG + chr6.1:10082483-10082502 MS.gene87913:CDS 50.0%
GGCTGTGAAAATGGGAAGGT+GGG + chr6.1:10082301-10082320 MS.gene87913:CDS 50.0%
GGTGATCGAATTTACCGGAC+TGG - chr6.1:10083262-10083281 None:intergenic 50.0%
TATGATGAACTGGCATCGCG+TGG + chr6.1:10084331-10084350 MS.gene87913:CDS 50.0%
TCAGGAAAAGGTCCAATGGG+CGG + chr6.1:10084596-10084615 MS.gene87913:CDS 50.0%
TGCAACAGCCTTTCTTGCCT+TGG + chr6.1:10084628-10084647 MS.gene87913:CDS 50.0%
TGTGAAAATGGGAAGGTGGG+AGG + chr6.1:10082304-10082323 MS.gene87913:CDS 50.0%
TGTTTATGTGGGAGGGAGTG+TGG + chr6.1:10082490-10082509 MS.gene87913:CDS 50.0%
TTCACCAATGCCGCCTAGAA+CGG + chr6.1:10082348-10082367 MS.gene87913:CDS 50.0%
! ATTGGAAGAGAGTGTGGGCT+GGG + chr6.1:10082466-10082485 MS.gene87913:CDS 50.0%
! CTCAAAGGTTCGAGAAGCGT+CGG - chr6.1:10081780-10081799 None:intergenic 50.0%
! CTTCTGAGGGCAATGTTCCA+AGG - chr6.1:10084648-10084667 None:intergenic 50.0%
! GGGTGTTGTGAGAGAGAATG+AGG - chr6.1:10081877-10081896 None:intergenic 50.0%
! GTTTATGTGGGAGGGAGTGT+GGG + chr6.1:10082491-10082510 MS.gene87913:CDS 50.0%
! TATTGGAAGAGAGTGTGGGC+TGG + chr6.1:10082465-10082484 MS.gene87913:CDS 50.0%
! TCATCGTCAACCGTTCTAGG+CGG - chr6.1:10082361-10082380 None:intergenic 50.0%
! TGATGACGATACCCCTGAGA+TGG + chr6.1:10083811-10083830 MS.gene87913:intron 50.0%
! TGTCGGCTGTGAAAATGGGA+AGG + chr6.1:10082297-10082316 MS.gene87913:CDS 50.0%
! TTGATCGCTCTAGGCGGAAT+TGG - chr6.1:10082253-10082272 None:intergenic 50.0%
!! AGGTGCTCTAAGAAATCGGG+AGG + chr6.1:10083589-10083608 MS.gene87913:intron 50.0%
!! AGGTGTCTGTGATGATGGTG+GGG + chr6.1:10082096-10082115 MS.gene87913:CDS 50.0%
!! ATTCCGCCGGTTGATGAAGT+TGG + chr6.1:10082139-10082158 MS.gene87913:CDS 50.0%
!! GAAGGTGTCTGTGATGATGG+TGG + chr6.1:10082094-10082113 MS.gene87913:CDS 50.0%
!! GATGATGGGTCGGTGAGATT+TGG + chr6.1:10081944-10081963 MS.gene87913:CDS 50.0%
!! GGGTCAGTGAGTTTTGGTGT+TGG + chr6.1:10082067-10082086 MS.gene87913:CDS 50.0%
!! GTGGGCTGGGTTGTTTATGT+GGG + chr6.1:10082479-10082498 MS.gene87913:CDS 50.0%
!! TGTGATAATGGGTCAGTGGG+AGG + chr6.1:10081992-10082011 MS.gene87913:CDS 50.0%
!! TGTGGGCTGGGTTGTTTATG+TGG + chr6.1:10082478-10082497 MS.gene87913:CDS 50.0%
!! TTCCGCCGGTTGATGAAGTT+GGG + chr6.1:10082140-10082159 MS.gene87913:CDS 50.0%
ACCGGCCCAACTTCATCAAC+CGG - chr6.1:10082148-10082167 None:intergenic 55.0%
ATGGGTCTGTGGGAGATGGT+GGG + chr6.1:10082209-10082228 MS.gene87913:CDS 55.0%
CACCACCGCCCAATGATCAT+GGG + chr6.1:10082047-10082066 MS.gene87913:CDS 55.0%
CGGCTGTGAAAATGGGAAGG+TGG + chr6.1:10082300-10082319 MS.gene87913:CDS 55.0%
GAAGTTGGGCCGGTGAAGTT+TGG + chr6.1:10082154-10082173 MS.gene87913:CDS 55.0%
GCGACGGAGGGTGATGATTT+GGG - chr6.1:10081753-10081772 None:intergenic 55.0%
GGCTGGGTTGTTTATGTGGG+AGG + chr6.1:10082482-10082501 MS.gene87913:CDS 55.0%
GGTGTGGGATGTGAGTGTGA+AGG + chr6.1:10082397-10082416 MS.gene87913:CDS 55.0%
TGCGACGGAGGGTGATGATT+TGG - chr6.1:10081754-10081773 None:intergenic 55.0%
TTGTCTCCTCTGTGCTTCCG+TGG - chr6.1:10084305-10084324 None:intergenic 55.0%
! TCAACCGTTCTAGGCGGCAT+TGG - chr6.1:10082355-10082374 None:intergenic 55.0%
! TGACAACCACGGAAGCACAG+AGG + chr6.1:10084296-10084315 MS.gene87913:CDS 55.0%
! TGGGAGGGAGTGTGGGAATA+GGG + chr6.1:10082498-10082517 MS.gene87913:CDS 55.0%
!! GATAATGGGTCAGTGGGAGG+TGG + chr6.1:10081995-10082014 MS.gene87913:CDS 55.0%
!! GATGATGGGTCTGTGGGAGA+TGG + chr6.1:10082205-10082224 MS.gene87913:CDS 55.0%
!! GGGTCGGTGAGATTTGGTGT+TGG + chr6.1:10081950-10081969 MS.gene87913:CDS 55.0%
!! GGTGTCTGTGATGATGGTGG+GGG + chr6.1:10082097-10082116 MS.gene87913:CDS 55.0%
!! GTATGGTGTGGTGGTGGGAA+AGG + chr6.1:10082556-10082575 MS.gene87913:CDS 55.0%
!! GTGTGGTGGTGGGAAAGGAT+GGG + chr6.1:10082561-10082580 MS.gene87913:CDS 55.0%
!! TGTGGTGGTGGGAAAGGATG+GGG + chr6.1:10082562-10082581 MS.gene87913:CDS 55.0%
AATGGGAAGGTGGGAGGCAG+TGG + chr6.1:10082310-10082329 MS.gene87913:CDS 60.0%
AATGGGTCAGTGGGAGGTGG+TGG + chr6.1:10081998-10082017 MS.gene87913:CDS 60.0%
ATGGGTCAGTGGGAGGTGGT+GGG + chr6.1:10081999-10082018 MS.gene87913:CDS 60.0%
CCACCACCGCCCAATGATCA+TGG + chr6.1:10082046-10082065 MS.gene87913:CDS 60.0%
CCATCTAGGGGAAGCCAGTC+CGG + chr6.1:10083245-10083264 MS.gene87913:intron 60.0%
CCATGATCATTGGGCGGTGG+TGG - chr6.1:10082049-10082068 None:intergenic 60.0%
GACCCATGATCATTGGGCGG+TGG - chr6.1:10082052-10082071 None:intergenic 60.0%
GATGGGTCTGTGGGAGATGG+TGG + chr6.1:10082208-10082227 MS.gene87913:CDS 60.0%
GGCCCAACTTCATCAACCGG+CGG - chr6.1:10082145-10082164 None:intergenic 60.0%
TGGCTTCCCCTAGATGGACC+TGG - chr6.1:10083242-10083261 None:intergenic 60.0%
TGGGTCTGTGGGAGATGGTG+GGG + chr6.1:10082210-10082229 MS.gene87913:CDS 60.0%
TTACCCTCTCCAGCACCCCA+TGG - chr6.1:10081911-10081930 None:intergenic 60.0%
! GTGGGAGGGAGTGTGGGAAT+AGG + chr6.1:10082497-10082516 MS.gene87913:CDS 60.0%
!! CAACCATGGGGTGCTGGAGA+GGG + chr6.1:10081905-10081924 MS.gene87913:CDS 60.0%
!! GAGAAGCGTCGGAGATGCGA+CGG - chr6.1:10081769-10081788 None:intergenic 60.0%
!! GCCGGTTGATGAAGTTGGGC+CGG + chr6.1:10082144-10082163 MS.gene87913:CDS 60.0%
!! GGGCCGGTGAAGTTTGGTGT+TGG + chr6.1:10082160-10082179 MS.gene87913:CDS 60.0%
!! GGTGTGGTGGTGGGAAAGGA+TGG + chr6.1:10082560-10082579 MS.gene87913:CDS 60.0%
!! TCAACCATGGGGTGCTGGAG+AGG + chr6.1:10081904-10081923 MS.gene87913:CDS 60.0%
TGGGTCAGTGGGAGGTGGTG+GGG + chr6.1:10082000-10082019 MS.gene87913:CDS 65.0%
! AGCGTCGGAGATGCGACGGA+GGG - chr6.1:10081765-10081784 None:intergenic 65.0%
! GGGTCTGTGGGAGATGGTGG+GGG + chr6.1:10082211-10082230 MS.gene87913:CDS 65.0%
!! AAGCGTCGGAGATGCGACGG+AGG - chr6.1:10081766-10081785 None:intergenic 65.0%
!! CCGGACTGGCTTCCCCTAGA+TGG - chr6.1:10083248-10083267 None:intergenic 65.0%
GCAGTGACACGGCCGCCCAT+TGG - chr6.1:10084611-10084630 None:intergenic 70.0%
GGGAAGGTGGGAGGCAGTGG+TGG + chr6.1:10082313-10082332 MS.gene87913:CDS 70.0%
! GGGTCAGTGGGAGGTGGTGG+GGG + chr6.1:10082001-10082020 MS.gene87913:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 10081590 10084675 10081590 ID=MS.gene87913
chr6.1 mRNA 10081590 10084675 10081590 ID=MS.gene87913.t1;Parent=MS.gene87913
chr6.1 exon 10081590 10082637 10081590 ID=MS.gene87913.t1.exon1;Parent=MS.gene87913.t1
chr6.1 CDS 10081590 10082637 10081590 ID=cds.MS.gene87913.t1;Parent=MS.gene87913.t1
chr6.1 exon 10084287 10084675 10084287 ID=MS.gene87913.t1.exon2;Parent=MS.gene87913.t1
chr6.1 CDS 10084287 10084675 10084287 ID=cds.MS.gene87913.t1;Parent=MS.gene87913.t1
Gene Sequence

>MS.gene87913

ATGAAGATACCCAGGAAATCGAGTAGCAGCAATGGTGATTCAAACTCTTCATCATCATCATCATCGTTTCTTGTTCAACACGCAACCCTAATTCTACCATATCTAACCCACACACAACTCGCCAACATCTCCCTAACCTGCAAATCACTCCATAAACTCACCCAAATCATCACCCTCCGTCGCATCTCCGACGCTTCTCGAACCTTTGAGAATCATCCAATCCCATTTCTCAACACCATCAACAACAACAACCCTCCTTACTCCTACTTTCTATACACACCTTCCCTCATTCTCTCTCACAACACCCCCAATTATCAACCATGGGGTGCTGGAGAGGGTAATTCTCTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGGTTGTGATTTTGAAGGTGTTTGTGATAATGGGTCAGTGGGAGGTGGTGGGGGTAGTTCTGTCATTTCACTACTACCACCACCGCCCAATGATCATGGGTCAGTGAGTTTTGGTGTTGGATGTGAAGGTGTCTGTGATGATGGTGGGGGTAAATCAGTAATTTCACTAATTCCGCCGGTTGATGAAGTTGGGCCGGTGAAGTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGGAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAGCGATCAATGATGAGGGATCGGTGAGATTTGATGTCGGCTGTGAAAATGGGAAGGTGGGAGGCAGTGGTGGTAGTTCAGTTATTTCACCAATGCCGCCTAGAACGGTTGACGATGATGACTCAGTGAGATTTGGTGTGGGATGTGAGTGTGAAGGTGCTTGTGATGATGAGTGTATGTGTTTTTTTGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGCTGGGTTGTTTATGTGGGAGGGAGTGTGGGAATAGGGTGAGTCAAAATGGGGTTAATGTTAGGGTTAAGATTGTATGGTGTGGTGGTGGGAAAGGATGGGGTTTGTTTGCGAATCAGGTTGTTCGTAAAGAGGAGTTCTTGTTTCAATATGCAGGTATAAATTTCATTGCTTTTATTAAATATTTAAGTGATTGTTTGATTGATTATAGGATTGTAACATTGGTTCTTATGTATATTTTAGTATTTTTGCGTAGGATTGATTTGAATTTGAACGTGGAATTTGGAGGTCTTTTTGTCTCTATAATATATGTTAGAATTGATTCTAGAATCGTATAGTTGATTATGACGTGTTTTTGTGTTTTAGAGTTGGAATGATTTTTCCATTAGAAATTTAGAATTGATCCGAATTTGGTGCTAAAATTTTGAGATTTTGCGTTCATGATAGAAGCTAGAATTGATGCTAGAAATCATAAAGTGCTTGTTTGGATATATGTTGGTTTGACGTTTCTCGCGTCACAATGTGTTCTCAAGCTTAAGATTTTGAATTACGTTTATGTTATTTGTATCAGTATATGTATGTGCGCGCTTTTCAATTTTATATTTAATTTTTAGGTATGGAATTCTTAATCTCAGCATAAACAAAGTCACGAACTAGAAAACACGAACAAACTCATTGTTTCAAATTGCAAAGAACATAACAGACCCAAAAGGTGAATAATTCTGATGAGTTAAAAACTAGCTCTACCAAGTTCAATCCAGGTCCATCTAGGGGAAGCCAGTCCGGTAAATTCGATCACCAAGTATTTTCTGGTTTTTCATACGGAATTGAATCTTGTTGCCAACAACTTGTTGGTATGATTCATCAATTTTACTTCTTCTACATGCTAGCTACATGCTAGAATGCGATTAATCCACATTCTCAAGTAGAACAAAACCACTGTACATTTTCAATTGCCATTTTGACAACCTTCCCTTGAGTGAAATATTAAGTTTTCATTGCAAGCTGAGCTGTATTTTACCCTAATTATTAGCTTGTTAAGATGATGGTCTATAGGTCAAGGGTGAAGTCTTGAATTTGATATTTCTATGTAAAAAGTTACTTTATAGGTGCTCTAAGAAATCGGGAGGTTTTATACTATAGTAGGAACACGGGTCTTTGGTTTTAGCAACCCACTTAGAAGGCAAAATCAATTTGCAAATTGCAATATGTTGAGTAGGAATGTTTCAAATCCGTAGATGTAAACTGCCTGTACTTTTGTATTTAAGTTAATAGTTAAGGTACTTTTGATATTTTGACTAATATAGAGATTTGAAAGGCTTTTTATTTTGATGACGATACCCCTGAGATGGTGACATTATCAAATATGAGTCTATTTGGATGACTTATTTGAGCTTATCTCCTAACACAAGCACTTGTGAGACTGTTTGGGAAACAACTTATGACGGGTCCATAAGCTGTTTTCAACGTATTTCCATAAGCTCTCCGAAACAGCTTATGAAAACAAATTGTAGCTTATATGAAAACAATTCGACTCTATGTTATCTTTTGTTAACAAATAGCTTATATATAAGCGCTGATGTTATAAGCGGTTAATTAAATTGTTTATCTAAACAGAGCCATATATGCTTATGAACTAAAGAGTTGTGTGAAGATTGATAGAAACTACCTCCTAGTGTTTGCTATGTTAAGGTGATTGGGTCTGATAGTTTCTTGATTCTTTTAGTTGTGTTTTTATGCATGACATTTCTTTATCCCTACACAAATGCTTGCAAAATTAATTTGCGGTTTTCTGTGTGAAAAAGGTGAACTACTGACAACCACGGAAGCACAGAGGAGACAACAACATTATGATGAACTGGCATCGCGTGGTCGTTTCTCGTCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAAAATAGGAAATGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAAGAGCTTTGTTCCCCCGCCTCTGCTTTTTTGCTTCGAAAGATATCCAAAAAAATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAATGGGCGGCCGTGTCACTGCAACAGCCTTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA
Protein sequence

>MS.gene87913.t1

MKIPRKSSSSNGDSNSSSSSSSFLVQHATLILPYLTHTQLANISLTCKSLHKLTQIITLRRISDASRTFENHPIPFLNTINNNNPPYSYFLYTPSLILSHNTPNYQPWGAGEGNSLISDDGSVRFGVGCDFEGVCDNGSVGGGGGSSVISLLPPPPNDHGSVSFGVGCEGVCDDGGGKSVISLIPPVDEVGPVKFGVGCNFQGVCDDGSVGDGGGSSVISPIPPRAINDEGSVRFDVGCENGKVGGSGGSSVISPMPPRTVDDDDSVRFGVGCECEGACDDECMCFFDGVDGIGRECGLGCLCGRECGNRVSQNGVNVRVKIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLVRSTRALFPRLCFFASKDIQKNEELTFSYGEIRKRSNGRPCHCNSLSCLGTLPSEDT