AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87915

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87915.t1 MTR_6g027710 98.678 227 3 0 1 227 1 227 5.50e-168 462
MS.gene87915.t1 MTR_6g027700 57.692 208 69 3 37 227 4 209 2.09e-77 232
MS.gene87915.t1 MTR_1g070205 46.277 188 88 4 40 220 12 193 9.09e-49 160
MS.gene87915.t1 MTR_7g096530 67.961 103 33 0 39 141 13 115 4.95e-47 155
MS.gene87915.t1 MTR_7g096610 64.815 108 38 0 39 146 7 114 5.69e-47 155
MS.gene87915.t1 MTR_8g036085 66.667 102 34 0 40 141 23 124 4.16e-46 153
MS.gene87915.t1 MTR_5g080470 54.701 117 53 0 41 157 8 124 4.86e-45 149
MS.gene87915.t1 MTR_1g070220 64.356 101 36 0 40 140 15 115 1.37e-44 148
MS.gene87915.t1 MTR_8g036105 60.504 119 46 1 40 157 18 136 3.61e-44 147
MS.gene87915.t1 MTR_7g074990 62.745 102 38 0 40 141 20 121 3.91e-44 148
MS.gene87915.t1 MTR_7g075230 62.385 109 37 3 40 144 12 120 4.68e-40 136
MS.gene87915.t1 MTR_4g105170 52.294 109 51 1 39 147 10 117 5.16e-35 123
MS.gene87915.t1 MTR_4g083680 49.074 108 54 1 39 146 14 120 9.01e-35 122
MS.gene87915.t1 MTR_3g071590 43.382 136 72 2 39 170 7 141 1.09e-34 121
MS.gene87915.t1 MTR_3g094690 51.376 109 52 1 38 146 45 152 2.83e-34 122
MS.gene87915.t1 MTR_3g031660 50.000 104 51 1 39 142 6 108 6.72e-34 120
MS.gene87915.t1 MTR_6g005070 48.276 116 57 2 39 154 8 120 7.07e-34 119
MS.gene87915.t1 MTR_3g077240 51.818 110 50 2 39 148 9 115 9.50e-34 120
MS.gene87915.t1 MTR_7g033800 51.923 104 49 1 39 142 10 112 1.10e-33 119
MS.gene87915.t1 MTR_2g068760 46.789 109 57 1 38 146 11 118 1.63e-33 118
MS.gene87915.t1 MTR_5g083960 49.107 112 56 1 39 150 38 148 1.68e-33 119
MS.gene87915.t1 MTR_5g083010 50.495 101 49 1 41 141 12 111 2.12e-33 119
MS.gene87915.t1 MTR_2g093310 40.397 151 79 3 37 181 30 175 2.47e-33 119
MS.gene87915.t1 MTR_3g094690 51.376 109 51 2 38 146 45 151 1.51e-32 118
MS.gene87915.t1 MTR_5g083230 49.038 104 52 1 39 142 5 107 2.15e-32 115
MS.gene87915.t1 MTR_5g017950 52.427 103 48 1 39 141 7 108 4.36e-32 119
MS.gene87915.t1 MTR_6g005080 45.690 116 60 2 39 154 9 121 1.04e-31 113
MS.gene87915.t1 MTR_3g073690 50.485 103 50 1 39 141 8 109 1.10e-31 115
MS.gene87915.t1 MTR_4g060950 42.963 135 68 4 37 164 21 153 2.70e-31 114
MS.gene87915.t1 MTR_3g071420 47.917 96 49 1 41 136 15 109 1.18e-30 112
MS.gene87915.t1 MTR_3g452660 45.299 117 60 2 39 155 6 118 1.04e-29 112
MS.gene87915.t1 MTR_5g075020 52.778 108 50 1 38 145 41 147 1.37e-29 110
MS.gene87915.t1 MTR_5g075020 52.778 108 50 1 38 145 45 151 2.27e-29 110
MS.gene87915.t1 MTR_1g095850 44.348 115 61 2 41 154 73 185 1.78e-28 107
MS.gene87915.t1 MTR_5g093010 45.283 106 57 1 41 146 6 110 3.34e-28 104
MS.gene87915.t1 MTR_8g040900 56.098 82 35 1 39 120 6 86 7.24e-27 103
MS.gene87915.t1 MTR_8g079660 44.762 105 57 1 37 141 5 108 3.56e-26 102
MS.gene87915.t1 MTR_7g028905 40.000 110 65 1 37 146 2 110 4.79e-26 98.2
MS.gene87915.t1 MTR_8g079620 39.815 108 64 1 34 141 2 108 3.08e-23 94.0
MS.gene87915.t1 MTR_8g079580 40.367 109 63 2 35 142 3 110 1.43e-20 86.7
MS.gene87915.t1 MTR_4g107450 41.584 101 58 1 41 141 11 110 4.37e-20 86.7
MS.gene87915.t1 MTR_2g100020 36.634 101 63 1 41 141 20 119 1.59e-19 85.1
MS.gene87915.t1 MTR_8g017090 37.624 101 62 1 41 141 13 112 2.48e-18 82.0
MS.gene87915.t1 MTR_6g011230 34.653 101 65 1 41 141 12 111 5.32e-17 76.6
MS.gene87915.t1 MTR_6g011250 38.235 102 61 2 41 141 10 110 7.10e-17 75.9
MS.gene87915.t1 MTR_6g011200 33.028 109 68 3 37 141 3 110 9.01e-16 74.3
MS.gene87915.t1 MTR_4g099230 41.975 81 45 2 41 120 3 82 1.22e-14 69.3
MS.gene87915.t1 MTR_5g085390 30.488 164 98 6 37 190 3 160 1.95e-13 67.4
MS.gene87915.t1 MTR_4g088035 27.072 181 99 5 39 191 5 180 1.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87915.t1 AT3G03760 67.785 149 43 1 39 187 50 193 3.17e-62 196
MS.gene87915.t1 AT2G42430 48.889 180 84 2 39 218 14 185 3.37e-49 161
MS.gene87915.t1 AT3G58190 61.864 118 44 1 40 157 11 127 3.65e-48 158
MS.gene87915.t1 AT2G42440 48.571 140 60 1 39 178 6 133 5.96e-44 148
MS.gene87915.t1 AT2G45420 65.385 104 36 0 43 146 40 143 1.16e-43 147
MS.gene87915.t1 AT5G06080 53.226 124 56 1 39 162 6 127 1.23e-43 145
MS.gene87915.t1 AT4G00220 62.500 104 39 0 43 146 20 123 3.32e-43 145
MS.gene87915.t1 AT4G00210 63.725 102 37 0 40 141 11 112 1.06e-42 144
MS.gene87915.t1 AT2G31310 56.604 106 46 0 39 144 6 111 1.11e-42 143
MS.gene87915.t1 AT2G45410 50.000 148 58 4 43 189 19 151 3.59e-40 136
MS.gene87915.t1 AT3G27650 52.885 104 48 1 39 142 38 140 1.05e-34 121
MS.gene87915.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene87915.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene87915.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene87915.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene87915.t1 AT2G30340 47.863 117 58 2 38 154 50 163 1.99e-33 121
MS.gene87915.t1 AT2G30340 47.863 117 58 2 38 154 51 164 1.99e-33 121
MS.gene87915.t1 AT2G30130 46.774 124 63 2 36 159 4 124 3.02e-33 119
MS.gene87915.t1 AT1G07900 45.378 119 62 2 37 154 30 146 3.35e-33 119
MS.gene87915.t1 AT3G11090 48.039 102 52 1 41 142 12 112 2.69e-32 115
MS.gene87915.t1 AT2G28500 47.748 111 55 2 37 146 52 160 5.69e-32 117
MS.gene87915.t1 AT1G16530 46.789 109 56 2 38 145 12 119 8.60e-32 114
MS.gene87915.t1 AT5G66870 41.290 155 79 3 39 193 6 148 1.68e-31 117
MS.gene87915.t1 AT1G31320 48.148 108 55 1 39 146 12 118 1.91e-30 111
MS.gene87915.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene87915.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene87915.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene87915.t1 AT2G40470 51.282 117 56 1 38 154 18 133 5.85e-29 108
MS.gene87915.t1 AT2G40470 51.282 117 56 1 38 154 43 158 5.93e-29 108
MS.gene87915.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene87915.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene87915.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene87915.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene87915.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene87915.t1 AT3G26660 44.444 108 52 2 41 141 6 112 2.10e-28 104
MS.gene87915.t1 AT3G26620 44.444 108 52 2 41 141 6 112 2.86e-28 103
MS.gene87915.t1 AT3G50510 38.532 109 66 1 33 141 5 112 5.63e-24 95.1
MS.gene87915.t1 AT3G50510 38.532 109 66 1 33 141 5 112 5.63e-24 95.1
MS.gene87915.t1 AT1G72980 41.818 110 62 2 39 147 12 120 6.59e-21 87.4
MS.gene87915.t1 AT3G13850 30.409 171 102 4 41 210 37 191 2.22e-19 84.3
MS.gene87915.t1 AT5G35900 33.981 103 67 1 39 141 4 105 9.85e-17 76.3
MS.gene87915.t1 AT3G47870 32.673 101 67 1 41 141 37 136 7.36e-15 72.8
MS.gene87915.t1 AT1G06280 41.333 75 43 1 41 115 25 98 2.99e-14 69.3
MS.gene87915.t1 AT4G22700 31.579 95 62 2 41 134 6 98 2.24e-12 63.9

Find 62 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGAAACGGCGGCTGATA+TGG 0.243600 6.1:+10089733 None:intergenic
AACAACTTCAACCCTGGTTT+TGG 0.268597 6.1:-10089625 MS.gene87915:CDS
AGGCTAGCTGATCCAGTTTA+TGG 0.286193 6.1:-10090155 MS.gene87915:CDS
CCTTCTTGCTTTGCAGCAAC+AGG 0.312094 6.1:-10090120 MS.gene87915:intron
AAATTGTTGCAGCAGCTTCC+TGG 0.332792 6.1:+10090195 None:intergenic
GACTGTGATGGCTGAGTCAC+AGG 0.379048 6.1:-10090483 None:intergenic
GGTGGTGATGGTAGTAGTTC+GGG 0.392136 6.1:-10090461 MS.gene87915:CDS
GTGGACACACAGCCATAAAC+TGG 0.395590 6.1:+10090143 None:intergenic
GAAGCACTTGTCCAACATTC+CGG 0.397219 6.1:-10090228 MS.gene87915:CDS
TGCATCTTTGCACCCTACTT+TGG 0.399115 6.1:-10090314 MS.gene87915:CDS
TGAAGTTGTTCATGTTCATA+AGG 0.399289 6.1:+10089638 None:intergenic
TAGCCTAGCTTGAGCCTCAT+AGG 0.409914 6.1:+10090172 None:intergenic
ATGGTAGTAGTTCGGGAAAC+AGG 0.414773 6.1:-10090454 MS.gene87915:CDS
TGCACAGGTACATTGAAGTT+TGG 0.417807 6.1:+10089700 None:intergenic
GTTGAAACGGCGGCTGATAT+GGG 0.423151 6.1:+10089734 None:intergenic
TGCAAACTCAATTGATGAAT+AGG 0.424003 6.1:-10089792 MS.gene87915:CDS
GCGGCTGTGCACAAGGTGTT+TGG 0.424834 6.1:-10090266 MS.gene87915:CDS
GGGTGGTGATGGTAGTAGTT+CGG 0.433902 6.1:-10090462 MS.gene87915:CDS
GCACCACACGGCGTTATAAC+CGG 0.444947 6.1:+10090371 None:intergenic
ATATCAGCCGCCGTTTCAAC+TGG 0.453062 6.1:-10089731 MS.gene87915:CDS
TTGGAATATGCTGGCTGCAC+AGG 0.466534 6.1:+10089685 None:intergenic
TTGCAGCAGCTTCCTGGCGA+TGG 0.481070 6.1:+10090201 None:intergenic
GGCTCTAAGCTCTGTGATGA+AGG 0.484149 6.1:+10089583 None:intergenic
TTTCTCAAAACGAGACATCC+TGG 0.484547 6.1:+10089549 None:intergenic
GTTGTTCATGTTCATAAGGT+TGG 0.485083 6.1:+10089642 None:intergenic
GCTTCCTGGCGATGGCTAGC+CGG 0.485119 6.1:+10090209 None:intergenic
TTGAGGAGGAAGTGTAGTAG+TGG 0.488789 6.1:-10090338 MS.gene87915:CDS
CCAAGGTGCGGCTAAGTTTG+CGG 0.493536 6.1:-10090285 MS.gene87915:CDS
AAGAGCAACACAAGACGAAC+CGG 0.499358 6.1:-10090390 MS.gene87915:CDS
GGTTGCTGTACCAGTTGAAA+CGG 0.507203 6.1:+10089721 None:intergenic
GGTGGAAGCAGATGAGTTGT+TGG 0.513070 6.1:+10089666 None:intergenic
TCCATTGTGAGGCCAAAACC+AGG 0.515508 6.1:+10089613 None:intergenic
CCTGTTGCTGCAAAGCAAGA+AGG 0.518305 6.1:+10090120 None:intergenic
GCGATGGCTAGCCGGAATGT+TGG 0.521327 6.1:+10090217 None:intergenic
AACATGAACAACTTCAACCC+TGG 0.523993 6.1:-10089631 MS.gene87915:CDS
TGCTGCAACAATTTCCTATG+AGG 0.529239 6.1:-10090186 MS.gene87915:CDS
GTTCATGTTCATAAGGTTGG+TGG 0.542354 6.1:+10089645 None:intergenic
CTGTTGCTGCAAAGCAAGAA+GGG 0.544374 6.1:+10090121 None:intergenic
ACCTTGGTCAGTACCAAAGT+AGG 0.553693 6.1:+10090301 None:intergenic
GCTGAGTCACAGGGTGGTGA+TGG 0.557362 6.1:-10090473 MS.gene87915:CDS
CATTCCGGCTAGCCATCGCC+AGG 0.568999 6.1:-10090213 MS.gene87915:CDS
AAACTCAATTGATGAATAGG+AGG 0.570071 6.1:-10089789 MS.gene87915:CDS
TAAGTTTGCGGCTGTGCACA+AGG 0.570935 6.1:-10090273 MS.gene87915:CDS
CCGCAAACTTAGCCGCACCT+TGG 0.577994 6.1:+10090285 None:intergenic
CATGTTCATAAGGTTGGTGG+TGG 0.580499 6.1:+10089648 None:intergenic
TTTCCTATGAGGCTCAAGCT+AGG 0.591556 6.1:-10090175 MS.gene87915:CDS
CCTTGGTCAGTACCAAAGTA+GGG 0.599955 6.1:+10090302 None:intergenic
GATGAGTTGTTGGAATATGC+TGG 0.605347 6.1:+10089676 None:intergenic
TTGAAACGGCGGCTGATATG+GGG 0.606891 6.1:+10089735 None:intergenic
CCCTACTTTGGTACTGACCA+AGG 0.613176 6.1:-10090302 MS.gene87915:CDS
GGTGGCAGCTATGCAAGCAG+AGG 0.634590 6.1:-10089824 MS.gene87915:CDS
GTGGTGCTTGCAAGTTCTTG+AGG 0.646814 6.1:-10090355 MS.gene87915:CDS
CTTTGGTACTGACCAAGGTG+CGG 0.655594 6.1:-10090297 MS.gene87915:CDS
TTGCTGCAAAGCAAGAAGGG+TGG 0.671870 6.1:+10090124 None:intergenic
AAGGTGCCGTCTCCATTGTG+AGG 0.672207 6.1:+10089602 None:intergenic
ACTGTGATGGCTGAGTCACA+GGG 0.673977 6.1:-10090482 None:intergenic
GTGCTTGCAAGTTCTTGAGG+AGG 0.680170 6.1:-10090352 MS.gene87915:CDS
TGCTGTACCAGTTGAAACGG+CGG 0.689555 6.1:+10089724 None:intergenic
AAGAACTTGCAAGCACCACA+CGG 0.689772 6.1:+10090359 None:intergenic
CCATTGTGAGGCCAAAACCA+GGG 0.697828 6.1:+10089614 None:intergenic
GAACCGGTTATAACGCCGTG+TGG 0.738703 6.1:-10090374 MS.gene87915:CDS
GTGATGGCTGAGTCACAGGG+TGG 0.776633 6.1:-10090479 MS.gene87915:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGATGAGAAAATTATT+AGG + chr6.1:10090039-10090058 None:intergenic 15.0%
!! AGAATATTTATCTATCTCTA+TGG - chr6.1:10089925-10089944 MS.gene87915:intron 20.0%
!! ATGATGAATAACTTACATTA+TGG - chr6.1:10090161-10090180 MS.gene87915:CDS 20.0%
!!! CATTCTTTCTTTGAAATTAA+AGG + chr6.1:10089969-10089988 None:intergenic 20.0%
AAACTCAATTGATGAATAGG+AGG - chr6.1:10090227-10090246 MS.gene87915:CDS 30.0%
ACTTGAGGTTACATTAATCT+TGG + chr6.1:10090132-10090151 None:intergenic 30.0%
TGAAGTTGTTCATGTTCATA+AGG + chr6.1:10090381-10090400 None:intergenic 30.0%
TGCAAACTCAATTGATGAAT+AGG - chr6.1:10090224-10090243 MS.gene87915:CDS 30.0%
GTTGTTCATGTTCATAAGGT+TGG + chr6.1:10090377-10090396 None:intergenic 35.0%
AACATGAACAACTTCAACCC+TGG - chr6.1:10090385-10090404 MS.gene87915:CDS 40.0%
CATCATTCATTCACGACTTG+AGG + chr6.1:10090147-10090166 None:intergenic 40.0%
GATGAGTTGTTGGAATATGC+TGG + chr6.1:10090343-10090362 None:intergenic 40.0%
GTTCATGTTCATAAGGTTGG+TGG + chr6.1:10090374-10090393 None:intergenic 40.0%
TGCACAGGTACATTGAAGTT+TGG + chr6.1:10090319-10090338 None:intergenic 40.0%
TGCTGCAACAATTTCCTATG+AGG - chr6.1:10089830-10089849 MS.gene87915:intron 40.0%
TTTCTCAAAACGAGACATCC+TGG + chr6.1:10090470-10090489 None:intergenic 40.0%
! AACAACTTCAACCCTGGTTT+TGG - chr6.1:10090391-10090410 MS.gene87915:CDS 40.0%
! TAGAGCCTTTTCAAAACTCC+AGG - chr6.1:10090449-10090468 MS.gene87915:CDS 40.0%
!!! GACATCCTGGAGTTTTGAAA+AGG + chr6.1:10090457-10090476 None:intergenic 40.0%
AAATTGTTGCAGCAGCTTCC+TGG + chr6.1:10089824-10089843 None:intergenic 45.0%
AAGAACTTGCAAGCACCACA+CGG + chr6.1:10089660-10089679 None:intergenic 45.0%
AAGAGCAACACAAGACGAAC+CGG - chr6.1:10089626-10089645 MS.gene87915:CDS 45.0%
ACCTTGGTCAGTACCAAAGT+AGG + chr6.1:10089718-10089737 None:intergenic 45.0%
ACTTACATTATGGCCGATGC+AGG - chr6.1:10090171-10090190 MS.gene87915:CDS 45.0%
ATGGTAGTAGTTCGGGAAAC+AGG - chr6.1:10089562-10089581 MS.gene87915:CDS 45.0%
CCTTGGTCAGTACCAAAGTA+GGG + chr6.1:10089717-10089736 None:intergenic 45.0%
CTGTTGCTGCAAAGCAAGAA+GGG + chr6.1:10089898-10089917 None:intergenic 45.0%
GGTTGCTGTACCAGTTGAAA+CGG + chr6.1:10090298-10090317 None:intergenic 45.0%
TGCATCTTTGCACCCTACTT+TGG - chr6.1:10089702-10089721 MS.gene87915:CDS 45.0%
TTTCCTATGAGGCTCAAGCT+AGG - chr6.1:10089841-10089860 MS.gene87915:intron 45.0%
! AGGCTAGCTGATCCAGTTTA+TGG - chr6.1:10089861-10089880 MS.gene87915:intron 45.0%
! GAAGCACTTGTCCAACATTC+CGG - chr6.1:10089788-10089807 MS.gene87915:CDS 45.0%
! TTGAGGAGGAAGTGTAGTAG+TGG - chr6.1:10089678-10089697 MS.gene87915:CDS 45.0%
! TTTTGGCCTCACAATGGAGA+CGG - chr6.1:10090408-10090427 MS.gene87915:CDS 45.0%
!! CATGTTCATAAGGTTGGTGG+TGG + chr6.1:10090371-10090390 None:intergenic 45.0%
AGTTGAAACGGCGGCTGATA+TGG + chr6.1:10090286-10090305 None:intergenic 50.0%
ATATCAGCCGCCGTTTCAAC+TGG - chr6.1:10090285-10090304 MS.gene87915:CDS 50.0%
CCATTGTGAGGCCAAAACCA+GGG + chr6.1:10090405-10090424 None:intergenic 50.0%
CCTGTTGCTGCAAAGCAAGA+AGG + chr6.1:10089899-10089918 None:intergenic 50.0%
CCTTCTTGCTTTGCAGCAAC+AGG - chr6.1:10089896-10089915 MS.gene87915:intron 50.0%
GGTGGAAGCAGATGAGTTGT+TGG + chr6.1:10090353-10090372 None:intergenic 50.0%
GTGCTTGCAAGTTCTTGAGG+AGG - chr6.1:10089664-10089683 MS.gene87915:CDS 50.0%
GTGGACACACAGCCATAAAC+TGG + chr6.1:10089876-10089895 None:intergenic 50.0%
GTGGTGCTTGCAAGTTCTTG+AGG - chr6.1:10089661-10089680 MS.gene87915:CDS 50.0%
GTTGAAACGGCGGCTGATAT+GGG + chr6.1:10090285-10090304 None:intergenic 50.0%
TAAGTTTGCGGCTGTGCACA+AGG - chr6.1:10089743-10089762 MS.gene87915:CDS 50.0%
TACATTATGGCCGATGCAGG+TGG - chr6.1:10090174-10090193 MS.gene87915:CDS 50.0%
TAGCCTAGCTTGAGCCTCAT+AGG + chr6.1:10089847-10089866 None:intergenic 50.0%
TCCATTGTGAGGCCAAAACC+AGG + chr6.1:10090406-10090425 None:intergenic 50.0%
TGCTGTACCAGTTGAAACGG+CGG + chr6.1:10090295-10090314 None:intergenic 50.0%
TTGAAACGGCGGCTGATATG+GGG + chr6.1:10090284-10090303 None:intergenic 50.0%
TTGCTGCAAAGCAAGAAGGG+TGG + chr6.1:10089895-10089914 None:intergenic 50.0%
! TTGGAATATGCTGGCTGCAC+AGG + chr6.1:10090334-10090353 None:intergenic 50.0%
!! CCCTACTTTGGTACTGACCA+AGG - chr6.1:10089714-10089733 MS.gene87915:CDS 50.0%
!! CTTTGGTACTGACCAAGGTG+CGG - chr6.1:10089719-10089738 MS.gene87915:CDS 50.0%
!! GGCTCTAAGCTCTGTGATGA+AGG + chr6.1:10090436-10090455 None:intergenic 50.0%
!! GGGTGGTGATGGTAGTAGTT+CGG - chr6.1:10089554-10089573 MS.gene87915:CDS 50.0%
!! GGTGGTGATGGTAGTAGTTC+GGG - chr6.1:10089555-10089574 MS.gene87915:CDS 50.0%
CCAAGGTGCGGCTAAGTTTG+CGG - chr6.1:10089731-10089750 MS.gene87915:CDS 55.0%
GAACCGGTTATAACGCCGTG+TGG - chr6.1:10089642-10089661 MS.gene87915:CDS 55.0%
GCACCACACGGCGTTATAAC+CGG + chr6.1:10089648-10089667 None:intergenic 55.0%
TGCATAGCTGCCACCTGCAT+CGG + chr6.1:10090187-10090206 None:intergenic 55.0%
!! AAGGTGCCGTCTCCATTGTG+AGG + chr6.1:10090417-10090436 None:intergenic 55.0%
!!! CCCTGGTTTTGGCCTCACAA+TGG - chr6.1:10090402-10090421 MS.gene87915:CDS 55.0%
CCGCAAACTTAGCCGCACCT+TGG + chr6.1:10089734-10089753 None:intergenic 60.0%
GCTGAGTCACAGGGTGGTGA+TGG - chr6.1:10089543-10089562 MS.gene87915:CDS 60.0%
GGTGGCAGCTATGCAAGCAG+AGG - chr6.1:10090192-10090211 MS.gene87915:CDS 60.0%
TTGCAGCAGCTTCCTGGCGA+TGG + chr6.1:10089818-10089837 None:intergenic 60.0%
! GCGATGGCTAGCCGGAATGT+TGG + chr6.1:10089802-10089821 None:intergenic 60.0%
! GCGGCTGTGCACAAGGTGTT+TGG - chr6.1:10089750-10089769 MS.gene87915:CDS 60.0%
GCTTCCTGGCGATGGCTAGC+CGG + chr6.1:10089810-10089829 None:intergenic 65.0%
! CATTCCGGCTAGCCATCGCC+AGG - chr6.1:10089803-10089822 MS.gene87915:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 10089540 10090498 10089540 ID=MS.gene87915
chr6.1 mRNA 10089540 10090498 10089540 ID=MS.gene87915.t1;Parent=MS.gene87915
chr6.1 exon 10090121 10090498 10090121 ID=MS.gene87915.t1.exon1;Parent=MS.gene87915.t1
chr6.1 CDS 10090121 10090498 10090121 ID=cds.MS.gene87915.t1;Parent=MS.gene87915.t1
chr6.1 exon 10089540 10089845 10089540 ID=MS.gene87915.t1.exon2;Parent=MS.gene87915.t1
chr6.1 CDS 10089540 10089845 10089540 ID=cds.MS.gene87915.t1;Parent=MS.gene87915.t1
Gene Sequence

>MS.gene87915

ATGGCTGAGTCACAGGGTGGTGATGGTAGTAGTTCGGGAAACAGGCGCAATAAAAGCGCAAATGCTGCTGCAAAGCGTGCAATAGCAAGAGCAACACAAGACGAACCGGTTATAACGCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTAGTGGATGCATCTTTGCACCCTACTTTGGTACTGACCAAGGTGCGGCTAAGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCACTTGTCCAACATTCCGGCTAGCCATCGCCAGGAAGCTGCTGCAACAATTTCCTATGAGGCTCAAGCTAGGCTAGCTGATCCAGTTTATGGCTGTGTGTCCACCCTTCTTGCTTTGCAGCAACAGGTTGAGTAGAATATTTATCTATCTCTATGGTTTTGCAGCTTCTATTCACCTTTAATTTCAAAGAAAGAATGATATTACATGTACATTCATAGTAAGTCATAAATGTTATGAAATATCACCTAATAATTTTCTCATCAATAATTGAAATGTTGTATTTTACTCTTTAAAGAAAATGTTTTCTTTAGAAGAAACAAATCAAAAAGATTGCATGCCAAGATTAATGTAACCTCAAGTCGTGAATGAATGATGAATAACTTACATTATGGCCGATGCAGGTGGCAGCTATGCAAGCAGAGGTCTCGATGATGCAAACTCAATTGATGAATAGGAGGCTTGCATATGCAAATGCAAGTACTCTTCAAGCCCCATATCAGCCGCCGTTTCAACTGGTACAGCAACCAAACTTCAATGTACCTGTGCAGCCAGCATATTCCAACAACTCATCTGCTTCCACCACCAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGGCCTCACAATGGAGACGGCACCTTCATCACAGAGCTTAGAGCCTTTTCAAAACTCCAGGATGTCTCGTTTTGAGAAAGATGATTAA
Protein sequence

>MS.gene87915.t1

MAESQGGDGSSSGNRRNKSANAAAKRAIARATQDEPVITPCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVHKVFGASNVSKHLSNIPASHRQEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAEVSMMQTQLMNRRLAYANASTLQAPYQPPFQLVQQPNFNVPVQPAYSNNSSASTTNLMNMNNFNPGFGLTMETAPSSQSLEPFQNSRMSRFEKDD