Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88102.t1 | XP_003605494.2 | 49.1 | 232 | 56 | 6 | 4 | 177 | 3 | 230 | 1.70E-39 | 172.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88102.t1 | Q9FJK3 | 52.6 | 76 | 32 | 1 | 4 | 79 | 3 | 74 | 5.7e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88102.t1 | G7JN54 | 49.1 | 232 | 56 | 6 | 4 | 177 | 3 | 230 | 1.2e-39 | 172.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88102.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88102.t1 | MTR_4g032290 | 49.138 | 232 | 56 | 6 | 4 | 177 | 3 | 230 | 2.98e-44 | 146 |
| MS.gene88102.t1 | MTR_4g031910 | 46.522 | 230 | 63 | 5 | 4 | 177 | 3 | 228 | 2.10e-42 | 141 |
| MS.gene88102.t1 | MTR_8g036130 | 36.614 | 254 | 71 | 10 | 4 | 177 | 3 | 246 | 4.91e-32 | 115 |
| MS.gene88102.t1 | MTR_4g032270 | 55.238 | 105 | 23 | 2 | 88 | 177 | 35 | 130 | 2.71e-30 | 107 |
| MS.gene88102.t1 | MTR_4g032620 | 34.979 | 243 | 79 | 8 | 1 | 177 | 1 | 230 | 2.34e-27 | 103 |
| MS.gene88102.t1 | MTR_1g090783 | 73.333 | 45 | 12 | 0 | 4 | 48 | 2 | 46 | 2.08e-15 | 70.1 |
| MS.gene88102.t1 | MTR_5g047580 | 58.065 | 62 | 22 | 1 | 4 | 65 | 3 | 60 | 2.70e-15 | 69.7 |
| MS.gene88102.t1 | MTR_3g065100 | 33.473 | 239 | 87 | 9 | 4 | 174 | 3 | 237 | 7.34e-15 | 70.5 |
| MS.gene88102.t1 | MTR_3g466830 | 71.111 | 45 | 13 | 0 | 4 | 48 | 2 | 46 | 1.39e-14 | 68.2 |
| MS.gene88102.t1 | MTR_1g077390 | 68.889 | 45 | 14 | 0 | 4 | 48 | 3 | 47 | 1.83e-14 | 67.8 |
| MS.gene88102.t1 | MTR_4g028800 | 76.744 | 43 | 8 | 1 | 6 | 48 | 5 | 45 | 2.11e-14 | 65.1 |
| MS.gene88102.t1 | MTR_3g466890 | 71.111 | 45 | 13 | 0 | 4 | 48 | 2 | 46 | 6.71e-14 | 66.2 |
| MS.gene88102.t1 | MTR_2g016210 | 69.767 | 43 | 13 | 0 | 6 | 48 | 5 | 47 | 7.69e-14 | 67.4 |
| MS.gene88102.t1 | MTR_1g090697 | 50.704 | 71 | 31 | 1 | 4 | 74 | 3 | 69 | 8.14e-14 | 65.9 |
| MS.gene88102.t1 | MTR_3g466980 | 64.444 | 45 | 16 | 0 | 4 | 48 | 3 | 47 | 1.42e-13 | 66.6 |
| MS.gene88102.t1 | MTR_4g032260 | 45.860 | 157 | 30 | 5 | 4 | 109 | 3 | 155 | 2.36e-13 | 64.7 |
| MS.gene88102.t1 | MTR_1g007990 | 68.889 | 45 | 14 | 0 | 41 | 85 | 912 | 956 | 5.37e-13 | 66.6 |
| MS.gene88102.t1 | MTR_5g075380 | 65.116 | 43 | 15 | 0 | 6 | 48 | 5 | 47 | 1.21e-12 | 62.8 |
| MS.gene88102.t1 | MTR_1g090710 | 63.265 | 49 | 17 | 1 | 1 | 49 | 1 | 48 | 4.21e-12 | 61.2 |
| MS.gene88102.t1 | MTR_4g063790 | 54.348 | 46 | 21 | 0 | 4 | 49 | 3 | 48 | 4.64e-12 | 61.6 |
| MS.gene88102.t1 | MTR_2g035610 | 82.222 | 45 | 8 | 0 | 4 | 48 | 3 | 47 | 6.41e-12 | 60.1 |
| MS.gene88102.t1 | MTR_3g031240 | 40.506 | 79 | 42 | 2 | 1 | 79 | 1 | 74 | 2.05e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88102.t1 | AT3G05860 | 42.708 | 96 | 37 | 3 | 4 | 90 | 3 | 89 | 5.76e-15 | 70.9 |
| MS.gene88102.t1 | AT3G05860 | 42.708 | 96 | 37 | 3 | 4 | 90 | 3 | 89 | 6.20e-15 | 70.1 |
| MS.gene88102.t1 | AT3G05860 | 42.708 | 96 | 37 | 3 | 4 | 90 | 3 | 89 | 6.71e-15 | 70.9 |
| MS.gene88102.t1 | AT1G65330 | 55.556 | 45 | 20 | 0 | 4 | 48 | 2 | 46 | 2.96e-11 | 60.8 |
| MS.gene88102.t1 | AT5G48670 | 33.690 | 187 | 66 | 7 | 4 | 136 | 3 | 185 | 4.47e-11 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGGTGAGGTCAATTC+TGG | 0.248303 | 4.4:+71963772 | MS.gene88102:CDS |
| TACCAATATCCTTCAAATTA+TGG | 0.254451 | 4.4:-71963576 | None:intergenic |
| TACCTTCAACGTAATAATTC+AGG | 0.297233 | 4.4:-71963802 | None:intergenic |
| GACCATAATTTGAAGGATAT+TGG | 0.307693 | 4.4:+71963574 | MS.gene88102:CDS |
| TTCAACATTTCTGTAGCTTC+TGG | 0.310708 | 4.4:-71962691 | None:intergenic |
| GTGAGGTCAATTCTGGAGTT+TGG | 0.312335 | 4.4:+71963779 | MS.gene88102:CDS |
| CACGGTCTCTTGCACATTAC+CGG | 0.334927 | 4.4:-71963749 | None:intergenic |
| TATGCAAACTCAATTATTGA+TGG | 0.339241 | 4.4:+71963714 | MS.gene88102:CDS |
| TACTACTGAAGATTGATAAA+AGG | 0.348888 | 4.4:+71962737 | MS.gene88102:CDS |
| CACCAAGTCTAGTAGCATTT+AGG | 0.356640 | 4.4:+71963674 | MS.gene88102:CDS |
| GAAGAAGAGTCTATTCAAAA+AGG | 0.366702 | 4.4:+71962466 | MS.gene88102:CDS |
| CCGCCATTTCGAGGTGAACT+TGG | 0.410693 | 4.4:-71963639 | None:intergenic |
| GCTGATTGACCATAATTTGA+AGG | 0.411622 | 4.4:+71963567 | MS.gene88102:CDS |
| GAAGGATATTGGTAGACGTT+TGG | 0.415968 | 4.4:+71963585 | MS.gene88102:CDS |
| GGCCTGAATTATTACGTTGA+AGG | 0.447302 | 4.4:+71963800 | MS.gene88102:CDS |
| GGAAAGCAACATACAAGAAA+AGG | 0.449202 | 4.4:+71962444 | MS.gene88102:CDS |
| AGCATTTAGGAGTGAAGAAA+TGG | 0.450016 | 4.4:+71963687 | MS.gene88102:CDS |
| GGTAGACGTTTGGAAGTGTT+TGG | 0.463590 | 4.4:+71963595 | MS.gene88102:CDS |
| AACCTTACTTCTTCTACCCA+TGG | 0.464315 | 4.4:-71962390 | None:intergenic |
| TCAATTATTGATGGACTCAA+TGG | 0.468362 | 4.4:+71963723 | MS.gene88102:CDS |
| CTCCTAAATGCTACTAGACT+TGG | 0.472072 | 4.4:-71963676 | None:intergenic |
| GTATTGTTGCCGCCATTTCG+AGG | 0.476909 | 4.4:-71963648 | None:intergenic |
| AAACCAAGTTCACCTCGAAA+TGG | 0.486349 | 4.4:+71963636 | MS.gene88102:CDS |
| AACCATGGGTAGAAGAAGTA+AGG | 0.494160 | 4.4:+71962388 | None:intergenic |
| TAGCTCCCTATGTGGTATTG+AGG | 0.500333 | 4.4:+71962499 | MS.gene88102:CDS |
| CCAGAATTGACCTCACCAAA+TGG | 0.504570 | 4.4:-71963772 | None:intergenic |
| GTGCAAGAGACCGTGCCATT+TGG | 0.506677 | 4.4:+71963757 | MS.gene88102:CDS |
| AGCAGCATCATTGACAATGA+AGG | 0.509472 | 4.4:-71962420 | None:intergenic |
| TCAAATCCTCTAAGTTTGGA+AGG | 0.524297 | 4.4:+71963526 | MS.gene88102:intron |
| AACATTTCTGTAGCTTCTGG+AGG | 0.551323 | 4.4:-71962688 | None:intergenic |
| ACAAGCCTCAATACCACATA+GGG | 0.552522 | 4.4:-71962504 | None:intergenic |
| CTAAATGCTACTAGACTTGG+TGG | 0.560540 | 4.4:-71963673 | None:intergenic |
| TTGATGGACTCAATGGTGGC+CGG | 0.600080 | 4.4:+71963730 | MS.gene88102:CDS |
| TCATTGTCAATGATGCTGCT+AGG | 0.603132 | 4.4:+71962423 | MS.gene88102:CDS |
| GTTGAACTTAGCTCCCTATG+TGG | 0.607749 | 4.4:+71962491 | MS.gene88102:CDS |
| CACAAGCCTCAATACCACAT+AGG | 0.610836 | 4.4:-71962505 | None:intergenic |
| CCAAGTTCACCTCGAAATGG+CGG | 0.611559 | 4.4:+71963639 | MS.gene88102:CDS |
| ATATCCTTCTTGTTCCCACA+AGG | 0.614886 | 4.4:-71962664 | None:intergenic |
| ATTATTGATGGACTCAATGG+TGG | 0.626977 | 4.4:+71963726 | MS.gene88102:CDS |
| AGAGACCGTGCCATTTGGTG+AGG | 0.639188 | 4.4:+71963762 | MS.gene88102:CDS |
| ATTGACCTCACCAAATGGCA+CGG | 0.665042 | 4.4:-71963767 | None:intergenic |
| AATGCTACTAGACTTGGTGG+TGG | 0.667608 | 4.4:-71963670 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCGTATTTGTATTATGTAT+AGG | + | chr4.4:71962581-71962600 | MS.gene88102:intron | 20.0% |
| ! | AATTTCCTAAATTCTAGCAT+AGG | + | chr4.4:71963223-71963242 | MS.gene88102:intron | 25.0% |
| ! | TAACTACTGAAGATTGAAAA+AGG | - | chr4.4:71963386-71963405 | None:intergenic | 25.0% |
| ! | TACCAATATCCTTCAAATTA+TGG | - | chr4.4:71963579-71963598 | None:intergenic | 25.0% |
| ! | TACTACTGAAGATTGATAAA+AGG | + | chr4.4:71962737-71962756 | MS.gene88102:CDS | 25.0% |
| ! | TAGAAAACAGAATAGTTAGA+TGG | + | chr4.4:71963498-71963517 | MS.gene88102:intron | 25.0% |
| ! | TAGAAAACAGAATAGTTAGA+TGG | - | chr4.4:71963517-71963498 | None:intergenic | 25.0% |
| ! | TATGCAAACTCAATTATTGA+TGG | + | chr4.4:71963714-71963733 | MS.gene88102:CDS | 25.0% |
| !! | ATCTAACTATTCTGTTTTCT+AGG | + | chr4.4:71962623-71962642 | MS.gene88102:intron | 25.0% |
| !! | ATCTAACTATTCTGTTTTCT+AGG | - | chr4.4:71962642-71962623 | None:intergenic | 25.0% |
| !!! | AAGGATTTGAGTTATTTTCT+TGG | + | chr4.4:71963545-71963564 | MS.gene88102:CDS | 25.0% |
| AGAAATGCATAACTCTCATA+AGG | - | chr4.4:71962545-71962564 | None:intergenic | 30.0% | |
| GAAATGCATAACTCTCATAA+GGG | - | chr4.4:71962544-71962563 | None:intergenic | 30.0% | |
| GAAGAAGAGTCTATTCAAAA+AGG | + | chr4.4:71962466-71962485 | MS.gene88102:CDS | 30.0% | |
| GACCATAATTTGAAGGATAT+TGG | + | chr4.4:71963574-71963593 | MS.gene88102:CDS | 30.0% | |
| GTGAGGAATATAACAAGTAT+TGG | + | chr4.4:71963030-71963049 | MS.gene88102:intron | 30.0% | |
| TAACTCAAATCCTCTAAGTT+TGG | + | chr4.4:71963522-71963541 | MS.gene88102:intron | 30.0% | |
| TGACTTGAGAGGAATATAAT+AGG | - | chr4.4:71963097-71963116 | None:intergenic | 30.0% | |
| ! | CTTGCATATATTTTCCTTGT+GGG | - | chr4.4:71963472-71963491 | None:intergenic | 30.0% |
| ! | GAGAGGAATATAATAGGTTT+TGG | - | chr4.4:71963091-71963110 | None:intergenic | 30.0% |
| ! | GTTGCATATATTTTCCTTGT+GGG | + | chr4.4:71962650-71962669 | MS.gene88102:CDS | 30.0% |
| !! | TCAATTATTGATGGACTCAA+TGG | + | chr4.4:71963723-71963742 | MS.gene88102:CDS | 30.0% |
| !! | TTTGATAGTGTGTTATCATG+TGG | - | chr4.4:71963159-71963178 | None:intergenic | 30.0% |
| AGATACAACAATGAAGCCTT+TGG | - | chr4.4:71963285-71963304 | None:intergenic | 35.0% | |
| AGCATTTAGGAGTGAAGAAA+TGG | + | chr4.4:71963687-71963706 | MS.gene88102:CDS | 35.0% | |
| CAATCTTCTAAGTCTAGCAT+AGG | - | chr4.4:71962899-71962918 | None:intergenic | 35.0% | |
| CCACAAGGAAAATATATGCA+AGG | + | chr4.4:71963470-71963489 | MS.gene88102:intron | 35.0% | |
| GCTGATTGACCATAATTTGA+AGG | + | chr4.4:71963567-71963586 | MS.gene88102:CDS | 35.0% | |
| GGAAAGCAACATACAAGAAA+AGG | + | chr4.4:71962444-71962463 | MS.gene88102:CDS | 35.0% | |
| GTTACCAAAATCCAGAGATT+GGG | - | chr4.4:71963252-71963271 | None:intergenic | 35.0% | |
| TCAAATCCTCTAAGTTTGGA+AGG | + | chr4.4:71963526-71963545 | MS.gene88102:intron | 35.0% | |
| TCAAATCCTTCCAAACTTAG+AGG | - | chr4.4:71963535-71963554 | None:intergenic | 35.0% | |
| TGTTACCAAAATCCAGAGAT+TGG | - | chr4.4:71963253-71963272 | None:intergenic | 35.0% | |
| TTCAACATTTCCGTATCTTC+TGG | + | chr4.4:71963428-71963447 | MS.gene88102:intron | 35.0% | |
| TTCAACATTTCTGTAGCTTC+TGG | - | chr4.4:71962694-71962713 | None:intergenic | 35.0% | |
| ! | CCTTGCATATATTTTCCTTG+TGG | - | chr4.4:71963473-71963492 | None:intergenic | 35.0% |
| ! | CGTTGCATATATTTTCCTTG+TGG | + | chr4.4:71962649-71962668 | MS.gene88102:CDS | 35.0% |
| !! | ATTATTGATGGACTCAATGG+TGG | + | chr4.4:71963726-71963745 | MS.gene88102:CDS | 35.0% |
| AAACCAAGTTCACCTCGAAA+TGG | + | chr4.4:71963636-71963655 | MS.gene88102:CDS | 40.0% | |
| AACATTTCCGTATCTTCTGG+AGG | + | chr4.4:71963431-71963450 | MS.gene88102:intron | 40.0% | |
| AACATTTCTGTAGCTTCTGG+AGG | - | chr4.4:71962691-71962710 | None:intergenic | 40.0% | |
| ACAAGCCTCAATACCACATA+GGG | - | chr4.4:71962507-71962526 | None:intergenic | 40.0% | |
| ACTGCTCTCGGTATAGTTAA+CGG | + | chr4.4:71963055-71963074 | MS.gene88102:intron | 40.0% | |
| AGATACAACGATGAAGCCTT+TGG | + | chr4.4:71962838-71962857 | MS.gene88102:intron | 40.0% | |
| AGCAGCATCATTGACAATGA+AGG | - | chr4.4:71962423-71962442 | None:intergenic | 40.0% | |
| ATATCCATCTTGTTCCCACA+AGG | + | chr4.4:71963455-71963474 | MS.gene88102:intron | 40.0% | |
| ATATCCTTCTTGTTCCCACA+AGG | - | chr4.4:71962667-71962686 | None:intergenic | 40.0% | |
| CACCAAGTCTAGTAGCATTT+AGG | + | chr4.4:71963674-71963693 | MS.gene88102:CDS | 40.0% | |
| CTAAATGCTACTAGACTTGG+TGG | - | chr4.4:71963676-71963695 | None:intergenic | 40.0% | |
| CTCCTAAATGCTACTAGACT+TGG | - | chr4.4:71963679-71963698 | None:intergenic | 40.0% | |
| GAAGGATATTGGTAGACGTT+TGG | + | chr4.4:71963585-71963604 | MS.gene88102:CDS | 40.0% | |
| GGACACCTATGCTAGAATTT+AGG | - | chr4.4:71963231-71963250 | None:intergenic | 40.0% | |
| GGATATTCCTCCAGAAGATA+CGG | - | chr4.4:71963441-71963460 | None:intergenic | 40.0% | |
| GTGTTATCATGTGGAGAAAG+TGG | - | chr4.4:71963150-71963169 | None:intergenic | 40.0% | |
| GTTCATTGAGCTTAGAGCTT+TGG | + | chr4.4:71962943-71962962 | MS.gene88102:intron | 40.0% | |
| TCATTGTCAATGATGCTGCT+AGG | + | chr4.4:71962423-71962442 | MS.gene88102:CDS | 40.0% | |
| TGGTACAGAATCCAGAGATT+GGG | + | chr4.4:71962870-71962889 | MS.gene88102:intron | 40.0% | |
| TTGGATAGTGTGCTATCATG+TGG | + | chr4.4:71962962-71962981 | MS.gene88102:intron | 40.0% | |
| TTGGTACAGAATCCAGAGAT+TGG | + | chr4.4:71962869-71962888 | MS.gene88102:intron | 40.0% | |
| ! | TGTGGAGAAAGTGGAGTTTT+TGG | + | chr4.4:71962980-71962999 | MS.gene88102:intron | 40.0% |
| ! | TGTGGAGAAAGTGGAGTTTT+TGG | - | chr4.4:71962999-71962980 | None:intergenic | 40.0% |
| ! | TTTTCCTTGTGGGAACAAGA+AGG | + | chr4.4:71962660-71962679 | MS.gene88102:CDS | 40.0% |
| ! | TTTTCCTTGTGGGAACAAGA+TGG | - | chr4.4:71962679-71962660 | None:intergenic | 40.0% |
| !! | CAAGTATTGGTTACTGCTCT+CGG | + | chr4.4:71963043-71963062 | MS.gene88102:intron | 40.0% |
| !! | GGATTTTGGTAACAATGCCT+CGG | + | chr4.4:71963259-71963278 | MS.gene88102:intron | 40.0% |
| ATTGACCTCACCAAATGGCA+CGG | - | chr4.4:71963770-71963789 | None:intergenic | 45.0% | |
| CACAAGCCTCAATACCACAT+AGG | - | chr4.4:71962508-71962527 | None:intergenic | 45.0% | |
| CCAGAATTGACCTCACCAAA+TGG | - | chr4.4:71963775-71963794 | None:intergenic | 45.0% | |
| CTCATAAGGGCCATACACTA+TGG | - | chr4.4:71962531-71962550 | None:intergenic | 45.0% | |
| GTGCTATCATGTGGAGAAAG+TGG | + | chr4.4:71962971-71962990 | MS.gene88102:intron | 45.0% | |
| GTTGAACTTAGCTCCCTATG+TGG | + | chr4.4:71962491-71962510 | MS.gene88102:CDS | 45.0% | |
| TAGCTCCCTATGTGGTATTG+AGG | + | chr4.4:71962499-71962518 | MS.gene88102:CDS | 45.0% | |
| TGGATTCTGTACCAATGCCT+CGG | - | chr4.4:71962864-71962883 | None:intergenic | 45.0% | |
| ! | CCATTTGGTGAGGTCAATTC+TGG | + | chr4.4:71963772-71963791 | MS.gene88102:CDS | 45.0% |
| ! | GTGTCCCAATCTCTGGATTT+TGG | + | chr4.4:71963245-71963264 | MS.gene88102:intron | 45.0% |
| !! | AATGCTACTAGACTTGGTGG+TGG | - | chr4.4:71963673-71963692 | None:intergenic | 45.0% |
| !! | GGAGAAAGTGGAGTTTTTGG+TGG | + | chr4.4:71962983-71963002 | MS.gene88102:intron | 45.0% |
| !! | GGAGAAAGTGGAGTTTTTGG+TGG | - | chr4.4:71963002-71962983 | None:intergenic | 45.0% |
| !! | GGTAGACGTTTGGAAGTGTT+TGG | + | chr4.4:71963595-71963614 | MS.gene88102:CDS | 45.0% |
| !! | GTGAGGTCAATTCTGGAGTT+TGG | + | chr4.4:71963779-71963798 | MS.gene88102:CDS | 45.0% |
| !!! | AGTTTTTGGTGGCATGTTGC+CGG | + | chr4.4:71962994-71963013 | MS.gene88102:intron | 45.0% |
| AACAATGAAGCCTTTGGCCG+AGG | - | chr4.4:71963279-71963298 | None:intergenic | 50.0% | |
| AGCATAGGTGTCCCAATCTC+TGG | + | chr4.4:71963238-71963257 | MS.gene88102:intron | 50.0% | |
| AGCATAGGTGTCCCAATCTC+TGG | - | chr4.4:71963257-71963238 | None:intergenic | 50.0% | |
| CACGGTCTCTTGCACATTAC+CGG | - | chr4.4:71963752-71963771 | None:intergenic | 50.0% | |
| CCAAGTTCACCTCGAAATGG+CGG | + | chr4.4:71963639-71963658 | MS.gene88102:CDS | 50.0% | |
| CCTCACAAGTCATTGAACGC+CGG | - | chr4.4:71963016-71963035 | None:intergenic | 50.0% | |
| CCTCTCAAGTCATTGAACGC+CGG | + | chr4.4:71963105-71963124 | MS.gene88102:intron | 50.0% | |
| GAGGCTTGTGCCATAGTGTA+TGG | + | chr4.4:71962518-71962537 | MS.gene88102:intron | 50.0% | |
| GTATTGTTGCCGCCATTTCG+AGG | - | chr4.4:71963651-71963670 | None:intergenic | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+CGG | + | chr4.4:71963730-71963749 | MS.gene88102:CDS | 50.0% |
| AACGATGAAGCCTTTGGCCG+AGG | + | chr4.4:71962844-71962863 | MS.gene88102:intron | 55.0% | |
| CCGCCATTTCGAGGTGAACT+TGG | - | chr4.4:71963642-71963661 | None:intergenic | 55.0% | |
| CCGGCGTTCAATGACTTGAG+AGG | - | chr4.4:71963108-71963127 | None:intergenic | 55.0% | |
| GGTAACAATGCCTCGGCCAA+AGG | + | chr4.4:71963266-71963285 | MS.gene88102:intron | 55.0% | |
| TGTACCAATGCCTCGGCCAA+AGG | - | chr4.4:71962857-71962876 | None:intergenic | 55.0% | |
| ! | CCGGCGTTCAATGACTTGTG+AGG | + | chr4.4:71963013-71963032 | MS.gene88102:intron | 55.0% |
| ! | GTGCAAGAGACCGTGCCATT+TGG | + | chr4.4:71963757-71963776 | MS.gene88102:CDS | 55.0% |
| !! | AGAGACCGTGCCATTTGGTG+AGG | + | chr4.4:71963762-71963781 | MS.gene88102:CDS | 55.0% |
| !!! | AGTTTTTGGTGGCCTGTGGC+CGG | - | chr4.4:71963127-71963146 | None:intergenic | 55.0% |
| !!! | GTGGAGTTTTTGGTGGCCTG+TGG | - | chr4.4:71963131-71963150 | None:intergenic | 55.0% |
| AGTCATTGAACGCCGGCCAC+AGG | + | chr4.4:71963112-71963131 | MS.gene88102:intron | 60.0% | |
| GAAGCCTTTGGCCGAGGCAT+TGG | + | chr4.4:71962850-71962869 | MS.gene88102:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 71962392 | 71963819 | 71962392 | ID=MS.gene88102 |
| chr4.4 | mRNA | 71962392 | 71963819 | 71962392 | ID=MS.gene88102.t1;Parent=MS.gene88102 |
| chr4.4 | exon | 71962392 | 71962534 | 71962392 | ID=MS.gene88102.t1.exon1;Parent=MS.gene88102.t1 |
| chr4.4 | CDS | 71962392 | 71962534 | 71962392 | ID=cds.MS.gene88102.t1;Parent=MS.gene88102.t1 |
| chr4.4 | exon | 71962645 | 71962758 | 71962645 | ID=MS.gene88102.t1.exon2;Parent=MS.gene88102.t1 |
| chr4.4 | CDS | 71962645 | 71962758 | 71962645 | ID=cds.MS.gene88102.t1;Parent=MS.gene88102.t1 |
| chr4.4 | exon | 71963540 | 71963819 | 71963540 | ID=MS.gene88102.t1.exon3;Parent=MS.gene88102.t1 |
| chr4.4 | CDS | 71963540 | 71963819 | 71963540 | ID=cds.MS.gene88102.t1;Parent=MS.gene88102.t1 |
| Gene Sequence |
| Protein sequence |
