Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88150.t1 | XP_003605474.1 | 71.2 | 229 | 59 | 2 | 1 | 222 | 1 | 229 | 9.40E-80 | 306.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88150.t1 | Q9FJK3 | 55.2 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 2.4e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88150.t1 | G7JM29 | 71.2 | 229 | 59 | 2 | 1 | 222 | 1 | 229 | 6.8e-80 | 306.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene88150.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88150.t1 | MTR_4g031910 | 71.795 | 234 | 49 | 2 | 1 | 222 | 1 | 229 | 1.59e-112 | 322 |
MS.gene88150.t1 | MTR_4g032290 | 68.443 | 244 | 42 | 2 | 1 | 222 | 1 | 231 | 1.68e-108 | 311 |
MS.gene88150.t1 | MTR_4g032620 | 58.009 | 231 | 88 | 1 | 1 | 222 | 1 | 231 | 6.34e-94 | 274 |
MS.gene88150.t1 | MTR_8g036130 | 56.680 | 247 | 82 | 4 | 1 | 222 | 1 | 247 | 2.59e-88 | 261 |
MS.gene88150.t1 | MTR_4g032260 | 78.981 | 157 | 33 | 0 | 1 | 157 | 1 | 157 | 4.10e-79 | 234 |
MS.gene88150.t1 | MTR_3g065100 | 48.963 | 241 | 98 | 4 | 1 | 219 | 1 | 238 | 8.14e-65 | 201 |
MS.gene88150.t1 | MTR_3g466980 | 45.690 | 232 | 101 | 5 | 1 | 218 | 1 | 221 | 1.82e-64 | 199 |
MS.gene88150.t1 | MTR_2g035610 | 71.311 | 122 | 35 | 0 | 1 | 122 | 1 | 122 | 1.72e-50 | 160 |
MS.gene88150.t1 | MTR_5g075380 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 2.80e-45 | 148 |
MS.gene88150.t1 | MTR_3g466830 | 48.344 | 151 | 77 | 1 | 3 | 153 | 2 | 151 | 3.64e-45 | 148 |
MS.gene88150.t1 | MTR_4g063790 | 44.805 | 154 | 85 | 0 | 1 | 154 | 1 | 154 | 1.57e-44 | 147 |
MS.gene88150.t1 | MTR_4g032270 | 72.917 | 96 | 18 | 1 | 135 | 222 | 36 | 131 | 2.82e-44 | 145 |
MS.gene88150.t1 | MTR_3g031100 | 34.821 | 224 | 134 | 4 | 1 | 219 | 1 | 217 | 3.96e-43 | 145 |
MS.gene88150.t1 | MTR_3g467080 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 1.78e-42 | 141 |
MS.gene88150.t1 | MTR_2g016210 | 39.011 | 182 | 109 | 2 | 1 | 180 | 1 | 182 | 2.11e-40 | 138 |
MS.gene88150.t1 | MTR_3g466890 | 45.395 | 152 | 82 | 1 | 3 | 154 | 2 | 152 | 4.06e-40 | 135 |
MS.gene88150.t1 | MTR_5g047580 | 45.513 | 156 | 83 | 2 | 1 | 156 | 1 | 154 | 4.44e-40 | 135 |
MS.gene88150.t1 | MTR_1g077390 | 41.667 | 156 | 89 | 2 | 1 | 156 | 1 | 154 | 1.48e-36 | 126 |
MS.gene88150.t1 | MTR_1g090783 | 41.558 | 154 | 88 | 2 | 3 | 156 | 2 | 153 | 1.86e-35 | 123 |
MS.gene88150.t1 | MTR_3g465410 | 43.651 | 126 | 71 | 0 | 29 | 154 | 1 | 126 | 4.64e-34 | 119 |
MS.gene88150.t1 | MTR_1g077320 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 6.39e-34 | 119 |
MS.gene88150.t1 | MTR_1g090710 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 7.25e-34 | 119 |
MS.gene88150.t1 | MTR_7g011950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 1.33e-33 | 118 |
MS.gene88150.t1 | MTR_4g028720 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 1.69e-33 | 118 |
MS.gene88150.t1 | MTR_1g084950 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 8.40e-33 | 116 |
MS.gene88150.t1 | MTR_1g090697 | 40.000 | 150 | 88 | 2 | 1 | 150 | 1 | 148 | 1.07e-31 | 113 |
MS.gene88150.t1 | MTR_1g077300 | 42.949 | 156 | 85 | 2 | 1 | 156 | 1 | 152 | 2.28e-31 | 112 |
MS.gene88150.t1 | MTR_4g028800 | 77.143 | 70 | 14 | 1 | 1 | 70 | 1 | 68 | 3.69e-31 | 109 |
MS.gene88150.t1 | MTR_3g031240 | 33.974 | 156 | 103 | 0 | 1 | 156 | 1 | 156 | 1.54e-30 | 111 |
MS.gene88150.t1 | MTR_7g055800 | 49.573 | 117 | 31 | 2 | 1 | 117 | 1 | 89 | 1.32e-28 | 103 |
MS.gene88150.t1 | MTR_3g466900 | 40.650 | 123 | 72 | 1 | 32 | 154 | 2 | 123 | 4.49e-28 | 103 |
MS.gene88150.t1 | MTR_7g055790 | 52.252 | 111 | 35 | 1 | 1 | 111 | 59 | 151 | 7.58e-26 | 98.6 |
MS.gene88150.t1 | MTR_2g035580 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 1.09e-25 | 98.2 |
MS.gene88150.t1 | MTR_3g466930 | 38.211 | 123 | 75 | 1 | 32 | 154 | 2 | 123 | 1.32e-25 | 97.4 |
MS.gene88150.t1 | MTR_7g106510 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 5.54e-24 | 99.4 |
MS.gene88150.t1 | MTR_4g019670 | 40.157 | 127 | 76 | 0 | 3 | 129 | 6 | 132 | 5.65e-24 | 99.4 |
MS.gene88150.t1 | MTR_7g055940 | 49.057 | 106 | 26 | 2 | 1 | 106 | 1 | 78 | 1.03e-23 | 90.5 |
MS.gene88150.t1 | MTR_5g047560 | 35.897 | 156 | 82 | 3 | 1 | 156 | 1 | 138 | 1.49e-22 | 89.7 |
MS.gene88150.t1 | MTR_3g093900 | 31.690 | 142 | 97 | 0 | 3 | 144 | 6 | 147 | 1.99e-21 | 92.4 |
MS.gene88150.t1 | MTR_2g035590 | 55.556 | 81 | 36 | 0 | 74 | 154 | 1 | 81 | 2.70e-17 | 74.7 |
MS.gene88150.t1 | MTR_1g114730 | 31.858 | 113 | 70 | 3 | 1 | 107 | 1 | 112 | 3.60e-13 | 67.8 |
MS.gene88150.t1 | MTR_6g018920 | 32.743 | 113 | 69 | 4 | 1 | 107 | 1 | 112 | 4.83e-13 | 67.4 |
MS.gene88150.t1 | MTR_6g005450 | 33.628 | 113 | 68 | 4 | 1 | 107 | 1 | 112 | 3.18e-12 | 65.1 |
MS.gene88150.t1 | MTR_6g005440 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 4.19e-11 | 61.6 |
MS.gene88150.t1 | MTR_4g084780 | 37.838 | 111 | 53 | 2 | 74 | 168 | 1 | 111 | 6.73e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88150.t1 | AT5G48670 | 55.195 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 1.58e-46 | 156 |
MS.gene88150.t1 | AT1G65330 | 42.246 | 187 | 94 | 3 | 3 | 176 | 2 | 187 | 8.31e-41 | 140 |
MS.gene88150.t1 | AT5G26630 | 44.503 | 191 | 95 | 2 | 1 | 181 | 1 | 190 | 2.32e-40 | 137 |
MS.gene88150.t1 | AT1G65300 | 46.053 | 152 | 81 | 1 | 3 | 154 | 2 | 152 | 2.55e-40 | 139 |
MS.gene88150.t1 | AT5G26650 | 40.476 | 168 | 89 | 2 | 5 | 162 | 3 | 169 | 1.21e-34 | 127 |
MS.gene88150.t1 | AT5G27960 | 40.476 | 168 | 89 | 3 | 5 | 162 | 3 | 169 | 2.69e-34 | 125 |
MS.gene88150.t1 | AT1G31630 | 36.905 | 168 | 95 | 3 | 3 | 161 | 2 | 167 | 2.21e-33 | 122 |
MS.gene88150.t1 | AT1G31640 | 39.735 | 151 | 89 | 2 | 3 | 153 | 2 | 150 | 1.33e-31 | 120 |
MS.gene88150.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.10e-30 | 112 |
MS.gene88150.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.22e-30 | 113 |
MS.gene88150.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 1.53e-30 | 113 |
MS.gene88150.t1 | AT2G28700 | 37.423 | 163 | 97 | 2 | 1 | 161 | 1 | 160 | 4.47e-30 | 114 |
MS.gene88150.t1 | AT5G27810 | 54.839 | 93 | 42 | 0 | 29 | 121 | 1 | 93 | 5.94e-30 | 108 |
MS.gene88150.t1 | AT1G22590 | 32.099 | 162 | 106 | 1 | 1 | 162 | 1 | 158 | 3.95e-26 | 99.8 |
MS.gene88150.t1 | AT5G26580 | 34.416 | 154 | 86 | 2 | 1 | 154 | 1 | 139 | 7.58e-23 | 95.1 |
MS.gene88150.t1 | AT5G06500 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 2.41e-22 | 91.7 |
MS.gene88150.t1 | AT2G40210 | 37.984 | 129 | 79 | 1 | 1 | 129 | 1 | 128 | 1.45e-17 | 80.5 |
MS.gene88150.t1 | AT5G58890 | 37.795 | 127 | 68 | 5 | 6 | 123 | 6 | 130 | 3.57e-15 | 73.2 |
MS.gene88150.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 2.78e-12 | 64.7 |
MS.gene88150.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 2.78e-12 | 64.7 |
MS.gene88150.t1 | AT5G27944 | 33.333 | 108 | 61 | 2 | 24 | 130 | 41 | 138 | 7.28e-11 | 60.1 |
MS.gene88150.t1 | AT5G27090 | 34.444 | 90 | 58 | 1 | 7 | 95 | 23 | 112 | 7.55e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.3:-68950929 | MS.gene88150:CDS |
CCCTTTGGTGAGATCAATTA+TGG | 0.234667 | 4.3:-68950612 | MS.gene88150:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4.3:+68950802 | None:intergenic |
ATAATTTCATCATCATTAAT+AGG | 0.285530 | 4.3:+68950690 | None:intergenic |
GTGAGATCAATTATGGAGTT+TGG | 0.309548 | 4.3:-68950605 | MS.gene88150:CDS |
AACAAAGGGTCTATTGAAAA+AGG | 0.314581 | 4.3:-68951162 | MS.gene88150:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.3:-68951082 | MS.gene88150:CDS |
AACATCTAGGAGTGAGGAAA+TGG | 0.347038 | 4.3:-68950742 | MS.gene88150:CDS |
ATCCTTCAAGGTAGTAAATC+AGG | 0.372648 | 4.3:+68950582 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.385590 | 4.3:-68950670 | MS.gene88150:CDS |
TCCTCACTCCTAGATGTTGT+TGG | 0.401049 | 4.3:+68950747 | None:intergenic |
GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.3:-68950793 | MS.gene88150:CDS |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.3:-68950928 | MS.gene88150:CDS |
GGCCTGATTTACTACCTTGA+AGG | 0.422090 | 4.3:-68950584 | None:intergenic |
AGTGAGGAAATGGGAATTGT+GGG | 0.443118 | 4.3:-68950732 | MS.gene88150:CDS |
GCTGAACTTAGCACCCTTTG+TGG | 0.444195 | 4.3:-68951137 | MS.gene88150:CDS |
CTAGATGTTGTTGGAGGTGG+TGG | 0.444811 | 4.3:+68950756 | None:intergenic |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.3:-68950811 | MS.gene88150:CDS |
TTGTGGGTCATGGCCATGTT+GGG | 0.452922 | 4.3:-68950716 | MS.gene88150:CDS |
CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4.3:-68951240 | None:intergenic |
CTCCTAGATGTTGTTGGAGG+TGG | 0.461559 | 4.3:+68950753 | None:intergenic |
TCTGGTGAAGGCCAAATCTC+AGG | 0.467267 | 4.3:+68951071 | None:intergenic |
CTCATAAGAGCCATACACTA+TGG | 0.467809 | 4.3:+68951100 | None:intergenic |
ATTGTGGGTCATGGCCATGT+TGG | 0.468248 | 4.3:-68950717 | MS.gene88150:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.3:-68950661 | MS.gene88150:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.3:-68950833 | MS.gene88150:CDS |
CTTGACACAAAGGATTCTGA+AGG | 0.491635 | 4.3:-68950967 | MS.gene88150:CDS |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.3:+68951208 | None:intergenic |
GATGTTGTTGGAGGTGGTGG+TGG | 0.505459 | 4.3:+68950759 | None:intergenic |
TCACTCCTAGATGTTGTTGG+AGG | 0.510768 | 4.3:+68950750 | None:intergenic |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.512375 | 4.3:+68950979 | None:intergenic |
GAGTGAGGAAATGGGAATTG+TGG | 0.516317 | 4.3:-68950733 | MS.gene88150:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.3:-68950804 | MS.gene88150:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.3:-68950790 | MS.gene88150:CDS |
ACATCTAGGAGTGAGGAAAT+GGG | 0.532509 | 4.3:-68950741 | MS.gene88150:CDS |
CACCACCTCCAACAACATCT+AGG | 0.540352 | 4.3:-68950755 | MS.gene88150:CDS |
ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.3:-68950885 | MS.gene88150:CDS |
ACAGGCTTCAATGCCACAAA+GGG | 0.554817 | 4.3:+68951124 | None:intergenic |
CCATAATTGATCTCACCAAA+GGG | 0.558369 | 4.3:+68950612 | None:intergenic |
GAAGCCTGTGCCATAGTGTA+TGG | 0.560968 | 4.3:-68951110 | MS.gene88150:CDS |
GAGATTTGGCCTTCACCAGA+GGG | 0.565461 | 4.3:-68951068 | MS.gene88150:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.572129 | 4.3:+68951235 | None:intergenic |
GATTTGGCCTTCACCAGAGG+GGG | 0.573799 | 4.3:-68951066 | MS.gene88150:CDS |
TCCATAATTGATCTCACCAA+AGG | 0.580970 | 4.3:+68950611 | None:intergenic |
GTGCACGAGACAGTGCCCTT+TGG | 0.582311 | 4.3:-68950627 | MS.gene88150:CDS |
CACAGGCTTCAATGCCACAA+AGG | 0.583021 | 4.3:+68951123 | None:intergenic |
AAGAGACTTTCTTGACACAA+AGG | 0.587821 | 4.3:-68950977 | MS.gene88150:CDS |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.3:+68950703 | None:intergenic |
GAAGGCCAAATCTCAGGTTG+AGG | 0.598100 | 4.3:+68951077 | None:intergenic |
ATTATTGATGGACTCAATGG+TGG | 0.602430 | 4.3:-68950658 | MS.gene88150:CDS |
TGAGATTTGGCCTTCACCAG+AGG | 0.614269 | 4.3:-68951069 | MS.gene88150:CDS |
GAAATGGGAATTGTGGGTCA+TGG | 0.616732 | 4.3:-68950726 | MS.gene88150:CDS |
AGATTTGGCCTTCACCAGAG+GGG | 0.650878 | 4.3:-68951067 | MS.gene88150:CDS |
TCCAACAACATCTAGGAGTG+AGG | 0.651992 | 4.3:-68950748 | MS.gene88150:CDS |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.3:-68951205 | MS.gene88150:CDS |
AGAGCCATACACTATGGCAC+AGG | 0.656790 | 4.3:+68951106 | None:intergenic |
TGTGCTCGACAATATGTCAA+CGG | 0.675885 | 4.3:-68950856 | MS.gene88150:CDS |
TTATTGATGGACTCAATGGT+GGG | 0.709058 | 4.3:-68950657 | MS.gene88150:CDS |
TTGATGGACTCAATGGTGGG+TGG | 0.734497 | 4.3:-68950654 | MS.gene88150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTTCATCATCATTAAT+AGG | + | chr4.3:68951133-68951152 | None:intergenic | 15.0% |
!! | AACATACAAAAAAAGAACAA+AGG | - | chr4.3:68950643-68950662 | MS.gene88150:CDS | 20.0% |
!! | ACATACAAAAAAAGAACAAA+GGG | - | chr4.3:68950644-68950663 | MS.gene88150:CDS | 20.0% |
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.3:68950891-68950910 | MS.gene88150:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.3:68950892-68950911 | MS.gene88150:CDS | 20.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.3:68951150-68951169 | MS.gene88150:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.3:68950987-68951006 | MS.gene88150:CDS | 25.0% |
AACAAAGGGTCTATTGAAAA+AGG | - | chr4.3:68950658-68950677 | MS.gene88150:CDS | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.3:68951009-68951028 | MS.gene88150:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.3:68951021-68951040 | None:intergenic | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.3:68951159-68951178 | MS.gene88150:CDS | 30.0% |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.3:68950843-68950862 | MS.gene88150:CDS | 35.0% | |
ATGTCTCATTGTCTCAATGA+AGG | - | chr4.3:68950935-68950954 | MS.gene88150:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.3:68951120-68951139 | None:intergenic | 35.0% | |
CCATAATTGATCTCACCAAA+GGG | + | chr4.3:68951211-68951230 | None:intergenic | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.3:68951016-68951035 | MS.gene88150:CDS | 35.0% | |
GTGAGATCAATTATGGAGTT+TGG | - | chr4.3:68951215-68951234 | MS.gene88150:CDS | 35.0% | |
TCCATAATTGATCTCACCAA+AGG | + | chr4.3:68951212-68951231 | None:intergenic | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.3:68950844-68950863 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.3:68951162-68951181 | MS.gene88150:CDS | 35.0% |
!! | TTATTGATGGACTCAATGGT+GGG | - | chr4.3:68951163-68951182 | MS.gene88150:CDS | 35.0% |
AACATCTAGGAGTGAGGAAA+TGG | - | chr4.3:68951078-68951097 | MS.gene88150:CDS | 40.0% | |
ACATCTAGGAGTGAGGAAAT+GGG | - | chr4.3:68951079-68951098 | MS.gene88150:CDS | 40.0% | |
AGTGAGGAAATGGGAATTGT+GGG | - | chr4.3:68951088-68951107 | MS.gene88150:CDS | 40.0% | |
CCCTTTGGTGAGATCAATTA+TGG | - | chr4.3:68951208-68951227 | MS.gene88150:CDS | 40.0% | |
CTCATAAGAGCCATACACTA+TGG | + | chr4.3:68950723-68950742 | None:intergenic | 40.0% | |
CTTGACACAAAGGATTCTGA+AGG | - | chr4.3:68950853-68950872 | MS.gene88150:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.3:68950615-68950634 | MS.gene88150:CDS | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.3:68950615-68950634 | None:intergenic | 40.0% | |
TGTGCTCGACAATATGTCAA+CGG | - | chr4.3:68950964-68950983 | MS.gene88150:CDS | 40.0% | |
!! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.3:68950786-68950805 | None:intergenic | 40.0% |
!! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.3:68950781-68950800 | None:intergenic | 40.0% |
ACAGGCTTCAATGCCACAAA+GGG | + | chr4.3:68950699-68950718 | None:intergenic | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.3:68950738-68950757 | MS.gene88150:CDS | 45.0% | |
GAAATGGGAATTGTGGGTCA+TGG | - | chr4.3:68951094-68951113 | MS.gene88150:CDS | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.3:68951027-68951046 | MS.gene88150:CDS | 45.0% | |
GAGTGAGGAAATGGGAATTG+TGG | - | chr4.3:68951087-68951106 | MS.gene88150:CDS | 45.0% | |
TCACTCCTAGATGTTGTTGG+AGG | + | chr4.3:68951073-68951092 | None:intergenic | 45.0% | |
TCCAACAACATCTAGGAGTG+AGG | - | chr4.3:68951072-68951091 | MS.gene88150:CDS | 45.0% | |
TCCTCACTCCTAGATGTTGT+TGG | + | chr4.3:68951076-68951095 | None:intergenic | 45.0% | |
AGAGCCATACACTATGGCAC+AGG | + | chr4.3:68950717-68950736 | None:intergenic | 50.0% | |
ATTGTGGGTCATGGCCATGT+TGG | - | chr4.3:68951103-68951122 | MS.gene88150:CDS | 50.0% | |
CACAGGCTTCAATGCCACAA+AGG | + | chr4.3:68950700-68950719 | None:intergenic | 50.0% | |
CACCACCTCCAACAACATCT+AGG | - | chr4.3:68951065-68951084 | MS.gene88150:CDS | 50.0% | |
CTAGATGTTGTTGGAGGTGG+TGG | + | chr4.3:68951067-68951086 | None:intergenic | 50.0% | |
CTCCTAGATGTTGTTGGAGG+TGG | + | chr4.3:68951070-68951089 | None:intergenic | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.3:68950710-68950729 | MS.gene88150:CDS | 50.0% | |
GCTGAACTTAGCACCCTTTG+TGG | - | chr4.3:68950683-68950702 | MS.gene88150:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.3:68951030-68951049 | MS.gene88150:CDS | 50.0% | |
TCTGGTGAAGGCCAAATCTC+AGG | + | chr4.3:68950752-68950771 | None:intergenic | 50.0% | |
TTGTGGGTCATGGCCATGTT+GGG | - | chr4.3:68951104-68951123 | MS.gene88150:CDS | 50.0% | |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.3:68950753-68950772 | MS.gene88150:CDS | 50.0% |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.3:68950746-68950765 | None:intergenic | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.3:68950752-68950771 | MS.gene88150:CDS | 50.0% |
! | TGAGATTTGGCCTTCACCAG+AGG | - | chr4.3:68950751-68950770 | MS.gene88150:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGG+TGG | - | chr4.3:68951166-68951185 | MS.gene88150:CDS | 50.0% |
! | GATGTTGTTGGAGGTGGTGG+TGG | + | chr4.3:68951064-68951083 | None:intergenic | 55.0% |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.3:68950754-68950773 | MS.gene88150:CDS | 55.0% |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.3:68950764-68950783 | None:intergenic | 60.0% | |
GTGCACGAGACAGTGCCCTT+TGG | - | chr4.3:68951193-68951212 | MS.gene88150:CDS | 60.0% | |
!! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.3:68950770-68950789 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 68950587 | 68951255 | 68950587 | ID=MS.gene88150 |
chr4.3 | mRNA | 68950587 | 68951255 | 68950587 | ID=MS.gene88150.t1;Parent=MS.gene88150 |
chr4.3 | exon | 68950587 | 68951255 | 68950587 | ID=MS.gene88150.t1.exon1;Parent=MS.gene88150.t1 |
chr4.3 | CDS | 68950587 | 68951255 | 68950587 | ID=cds.MS.gene88150.t1;Parent=MS.gene88150.t1 |
Gene Sequence |
Protein sequence |