AlfalfaGEDB | MS.gene88153

M. sativa cultivar XinJiangDaYe / MS.gene88153

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88153.t1	XP_003605474.1	72.1	229	57	2	1	222	1	229	5.00E-81	310.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88153.t1	Q9FJK3	55.8	154	67	1	1	154	1	153	5.3e-39	162.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88153.t1	G7JM29	72.1	229	57	2	1	222	1	229	3.6e-81	310.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88153.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88153.t1	MTR_4g031910	72.650	234	47	2	1	222	1	229	8.53e-114	325
MS.gene88153.t1	MTR_4g032290	68.852	244	41	2	1	222	1	231	5.88e-109	312
MS.gene88153.t1	MTR_4g032620	58.009	231	88	1	1	222	1	231	2.88e-94	275
MS.gene88153.t1	MTR_8g036130	56.680	247	82	4	1	222	1	247	5.43e-88	260
MS.gene88153.t1	MTR_4g032260	79.618	157	32	0	1	157	1	157	3.35e-80	237
MS.gene88153.t1	MTR_3g065100	49.378	241	97	4	1	219	1	238	7.22e-65	201
MS.gene88153.t1	MTR_3g466980	45.690	232	101	5	1	218	1	221	4.01e-63	196
MS.gene88153.t1	MTR_2g035610	72.951	122	33	0	1	122	1	122	1.05e-51	163
MS.gene88153.t1	MTR_4g032270	56.204	137	45	2	94	222	2	131	1.65e-46	150
MS.gene88153.t1	MTR_5g075380	47.742	155	80	1	1	155	1	154	1.52e-45	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88153.t1	AT5G48670	55.844	154	67	1	1	154	1	153	1.82e-46	156
MS.gene88153.t1	AT1G65330	42.246	187	94	3	3	176	2	187	4.32e-41	141
MS.gene88153.t1	AT1G65300	41.436	181	97	2	3	175	2	181	8.37e-41	140
MS.gene88153.t1	AT5G26630	43.979	191	96	2	1	181	1	190	3.36e-39	135
MS.gene88153.t1	AT5G26650	37.143	210	113	4	5	204	3	203	2.02e-36	131
MS.gene88153.t1	AT5G27960	41.071	168	88	3	5	162	3	169	8.76e-36	129
MS.gene88153.t1	AT1G31630	36.905	168	95	3	3	161	2	167	1.51e-34	125
MS.gene88153.t1	AT1G31640	39.735	151	89	2	3	153	2	150	7.29e-33	123
MS.gene88153.t1	AT3G05860	37.975	158	97	1	1	158	1	157	3.32e-31	114
MS.gene88153.t1	AT3G05860	37.975	158	97	1	1	158	1	157	4.84e-31	114

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Find 58 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGGGTCTATTGAAAA+AGG	0.314581	4.3:-68871504	MS.gene88153:CDS
AAGAGACTTTCTTGACACAA+AGG	0.587821	4.3:-68871319	MS.gene88153:CDS
ACAGGCTTCAATGCCACAGA+GGG	0.601811	4.3:+68871466	None:intergenic
AGAAACAAAGAAAAGAAAAT+AGG	0.231520	4.3:-68871271	MS.gene88153:CDS
AGAGCCATACACTATGGCAC+AGG	0.638872	4.3:+68871448	None:intergenic
AGATTTGGCCTTCATCAGAG+GGG	0.658935	4.3:-68871409	MS.gene88153:CDS
AGCATCTAGGAGTGAGGAAA+TGG	0.344298	4.3:-68871084	MS.gene88153:CDS
AGTGAGGAAATGGGAATTGT+GGG	0.443118	4.3:-68871074	MS.gene88153:CDS
ATAATTTCATCATCATTAAT+AGG	0.285530	4.3:+68871032	None:intergenic
ATCAGCCTCAACCTGAGATT+TGG	0.336848	4.3:-68871424	MS.gene88153:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGGGTCTATTGAAAA+AGG	-	chr4.3:68871000-68871019	MS.gene88153:CDS	30.0%
AAGAGACTTTCTTGACACAA+AGG	-	chr4.3:68871185-68871204	MS.gene88153:CDS	35.0%
ATGTCTCATTGTCTCAATGA+AGG	-	chr4.3:68871277-68871296	MS.gene88153:CDS	35.0%
CATTAATAGGTATCCCAACA+TGG	+	chr4.3:68871462-68871481	None:intergenic	35.0%
CCATAATTGATCTCACCAAA+GGG	+	chr4.3:68871553-68871572	None:intergenic	35.0%
GTGAGATCAATTATGGAGTT+TGG	-	chr4.3:68871557-68871576	MS.gene88153:CDS	35.0%
GTTGATTGACCATAATCTGA+AGG	-	chr4.3:68871351-68871370	MS.gene88153:CDS	35.0%
TACCAATGTCCTTCAGATTA+TGG	+	chr4.3:68871363-68871382	None:intergenic	35.0%
TCCATAATTGATCTCACCAA+AGG	+	chr4.3:68871554-68871573	None:intergenic	35.0%
TTTGTGTCAAGAAAGTCTCT+TGG	+	chr4.3:68871186-68871205	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	68870929	68871597	68870929	ID=MS.gene88153
chr4.3	mRNA	68870929	68871597	68870929	ID=MS.gene88153.t1;Parent=MS.gene88153
chr4.3	exon	68870929	68871597	68870929	ID=MS.gene88153.t1.exon1;Parent=MS.gene88153.t1
chr4.3	CDS	68870929	68871597	68870929	ID=cds.MS.gene88153.t1;Parent=MS.gene88153.t1

Gene Sequence

>MS.gene88153

ATGGCTAGAAGTAAGGTTAAACTCGCCTTCATTGTCAATGATGCTGCAAGGAAAGCAACATACAAAAAAAGAACAAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTGTGCCATAGTGTATGGCTCTTATCAGCCTCAACCTGAGATTTGGCCTTCATCAGAGGGGGTTCAATCTGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGATTCTGAAGGCTGAAGAGAAATTGAAGAAACAAAGAAAAGAAAATAGGGAGCAAGAGATGACAATACTCATGTCTCATTGTCTCAATGAAGGTAGAGTTGTGCACGACAATATGTCAACGGTTGATTTGAGTTATCTTACTTGGTTGATTGACCATAATCTGAAGGACATTGGTAGACGTTTGGCGGCAACAGTGCCACCACCACCTCCAACAGCATCTAGGAGTGAGGAAATGGGAATTGTGGGTCATGGCCATGTTGGGATACCTATTAATGATGATGAAATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCACGAGACAGTGCCCTTTGGTGAGATCAATTATGGAGTTTGGCCTGATTTACTACCTTGA

Protein sequence

>MS.gene88153.t1

MARSKVKLAFIVNDAARKATYKKRTKGLLKKVAELSTLCGIEACAIVYGSYQPQPEIWPSSEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRILKAEEKLKKQRKENREQEMTILMSHCLNEGRVVHDNMSTVDLSYLTWLIDHNLKDIGRRLAATVPPPPPTASRSEEMGIVGHGHVGIPINDDEIMQSQLLMDSMVAGNVHETVPFGEINYGVWPDLLP