AlfalfaGEDB | MS.gene88154

M. sativa cultivar XinJiangDaYe / MS.gene88154

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88154.t1	XP_003605494.2	67.6	244	44	2	1	222	1	231	5.90E-82	313.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88154.t1	Q9FJK3	48.9	182	92	1	1	182	1	181	1.8e-39	164.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88154.t1	G7JN54	67.6	244	44	2	1	222	1	231	4.2e-82	313.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88154.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88154.t1	MTR_4g031910	73.362	229	54	1	1	222	1	229	1.59e-113	324
MS.gene88154.t1	MTR_4g032290	70.902	244	36	2	1	222	1	231	1.21e-111	319
MS.gene88154.t1	MTR_4g032620	58.874	231	86	1	1	222	1	231	7.89e-96	279
MS.gene88154.t1	MTR_8g036130	58.704	247	77	4	1	222	1	247	1.71e-91	269
MS.gene88154.t1	MTR_4g032260	82.051	156	28	0	1	156	1	156	3.71e-83	244
MS.gene88154.t1	MTR_3g065100	47.521	242	100	4	1	219	1	238	1.25e-62	195
MS.gene88154.t1	MTR_3g466980	46.119	219	102	4	1	214	1	208	5.26e-61	190
MS.gene88154.t1	MTR_2g035610	72.131	122	34	0	1	122	1	122	5.80e-51	161
MS.gene88154.t1	MTR_4g032270	77.083	96	14	1	135	222	36	131	4.48e-46	149
MS.gene88154.t1	MTR_3g466830	47.682	151	78	1	3	153	2	151	1.94e-45	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88154.t1	AT5G48670	55.195	154	68	1	1	154	1	153	3.80e-46	155
MS.gene88154.t1	AT1G65300	40.331	181	99	2	3	175	2	181	1.83e-40	140
MS.gene88154.t1	AT1G65330	42.262	168	88	2	3	162	2	168	2.03e-38	134
MS.gene88154.t1	AT5G26630	42.408	191	99	3	1	181	1	190	1.37e-37	130
MS.gene88154.t1	AT5G26650	43.137	153	86	1	5	157	3	154	2.08e-36	131
MS.gene88154.t1	AT5G27960	42.484	153	87	1	5	157	3	154	9.24e-36	129
MS.gene88154.t1	AT1G31630	36.310	168	97	3	3	162	2	167	3.20e-34	125
MS.gene88154.t1	AT1G31640	39.073	151	90	2	3	153	2	150	1.05e-32	123
MS.gene88154.t1	AT3G05860	40.000	150	89	1	1	150	1	149	1.92e-32	117
MS.gene88154.t1	AT5G27810	56.989	93	40	0	29	121	1	93	7.87e-32	112

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Find 59 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAAGGGTCTATTGAAAA+AGG	0.335070	4.3:-68855781	MS.gene88154:CDS
AAGAGACTTTCTTGACACAA+AGG	0.607804	4.3:-68855596	MS.gene88154:CDS
ACAGGCTTCAATGCCACAGA+GGG	0.601811	4.3:+68855743	None:intergenic
ACTTGCCTTCATTGTCAATG+AGG	0.536135	4.3:-68855832	MS.gene88154:CDS
AGAGACTTTCTTGACACAAA+GGG	0.517022	4.3:-68855595	MS.gene88154:CDS
AGATTTGGCCTTCACCAGAG+GGG	0.650878	4.3:-68855686	MS.gene88154:CDS
AGCATCTAGGAGCGAAGAAA+TGG	0.428793	4.3:-68855361	MS.gene88154:CDS
AGCGAAGAAATGGCAATTAT+GGG	0.425600	4.3:-68855351	MS.gene88154:CDS
AGGGCCATACACTATGGCAC+AGG	0.641363	4.3:+68855725	None:intergenic
ATAATGTCATCATTATTAAT+AGG	0.321721	4.3:+68855309	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATACAAGAAAAGAACGA+AGG	-	chr4.3:68855262-68855281	MS.gene88154:CDS	30.0%
GTTGATTGACCATAATTTGA+AGG	-	chr4.3:68855628-68855647	MS.gene88154:CDS	30.0%
TACCAATGTCCTTCAAATTA+TGG	+	chr4.3:68855640-68855659	None:intergenic	30.0%
TCATACAAGAAAAGAACGAA+GGG	-	chr4.3:68855263-68855282	MS.gene88154:CDS	30.0%
AACGAAGGGTCTATTGAAAA+AGG	-	chr4.3:68855277-68855296	MS.gene88154:CDS	35.0%
AAGAGACTTTCTTGACACAA+AGG	-	chr4.3:68855462-68855481	MS.gene88154:CDS	35.0%
AGAGACTTTCTTGACACAAA+GGG	-	chr4.3:68855463-68855482	MS.gene88154:CDS	35.0%
AGCGAAGAAATGGCAATTAT+GGG	-	chr4.3:68855707-68855726	MS.gene88154:CDS	35.0%
ATGTCTCATTGTCTCAATGA+AGG	-	chr4.3:68855554-68855573	MS.gene88154:CDS	35.0%
GACCATAATTTGAAGGACAT+TGG	-	chr4.3:68855635-68855654	MS.gene88154:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	68855206	68855874	68855206	ID=MS.gene88154
chr4.3	mRNA	68855206	68855874	68855206	ID=MS.gene88154.t1;Parent=MS.gene88154
chr4.3	exon	68855206	68855874	68855206	ID=MS.gene88154.t1.exon1;Parent=MS.gene88154.t1
chr4.3	CDS	68855206	68855874	68855206	ID=cds.MS.gene88154.t1;Parent=MS.gene88154.t1

Gene Sequence

>MS.gene88154

ATGGCTAGAAGTAAGGTTAAACTTGCCTTCATTGTCAATGAGGCTACAAGGAAAGCATCATACAAGAAAAGAACGAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTGTGCCATAGTGTATGGCCCTTATGAGCCTCAACCTGAGATTTGGCCTTCACCAGAGGGGGTCCAATCTGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTTCTGAAGGCTGAAGAGAAATTGATGAAACAAAGAAAAGATAATAGGGAGCAAGAGATGACAATACTCATGTCTCATTGTCTCAATGAAGGTAGAGTTGTTGACGACAATATGTCAACGGTTGATTTGAGTTATCTTACTTGGTTGATTGACCATAATTTGAAGGACATTGGTAGACGTTTGGCGGCAATAGTGCTACCACCACCTCCAGCAGCATCTAGGAGCGAAGAAATGGCAATTATGGGTCATGGCCATATTGGAATACCTATTAATAATGATGACATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCAAGAGACAGTGCCCTTTGGTGAGATCAATTCTGGAGTTTGCCCTGATTTACTACCTTGA

Protein sequence

>MS.gene88154.t1

MARSKVKLAFIVNEATRKASYKKRTKGLLKKVAELSTLCGIEACAIVYGPYEPQPEIWPSPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKAEEKLMKQRKDNREQEMTILMSHCLNEGRVVDDNMSTVDLSYLTWLIDHNLKDIGRRLAAIVLPPPPAASRSEEMAIMGHGHIGIPINNDDIMQSQLLMDSMVAGNVQETVPFGEINSGVCPDLLP