Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88155.t1 | XP_003605494.2 | 69.7 | 244 | 39 | 2 | 1 | 222 | 1 | 231 | 5.90E-85 | 323.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88155.t1 | Q9FJK3 | 47.3 | 182 | 95 | 1 | 1 | 182 | 1 | 181 | 1.1e-39 | 164.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88155.t1 | G7JN54 | 69.7 | 244 | 39 | 2 | 1 | 222 | 1 | 231 | 4.2e-85 | 323.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene88155.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88155.t1 | MTR_4g031910 | 72.222 | 234 | 48 | 2 | 1 | 222 | 1 | 229 | 1.26e-112 | 322 |
MS.gene88155.t1 | MTR_4g032290 | 69.672 | 244 | 39 | 2 | 1 | 222 | 1 | 231 | 7.53e-108 | 310 |
MS.gene88155.t1 | MTR_4g032620 | 57.143 | 231 | 90 | 1 | 1 | 222 | 1 | 231 | 1.78e-95 | 278 |
MS.gene88155.t1 | MTR_8g036130 | 57.490 | 247 | 80 | 4 | 1 | 222 | 1 | 247 | 1.21e-90 | 267 |
MS.gene88155.t1 | MTR_4g032260 | 79.618 | 157 | 32 | 0 | 1 | 157 | 1 | 157 | 1.17e-80 | 238 |
MS.gene88155.t1 | MTR_3g065100 | 47.718 | 241 | 101 | 4 | 1 | 219 | 1 | 238 | 4.44e-64 | 199 |
MS.gene88155.t1 | MTR_3g466980 | 45.872 | 218 | 104 | 3 | 1 | 214 | 1 | 208 | 4.48e-62 | 193 |
MS.gene88155.t1 | MTR_2g035610 | 72.131 | 122 | 34 | 0 | 1 | 122 | 1 | 122 | 6.06e-52 | 164 |
MS.gene88155.t1 | MTR_4g032270 | 76.042 | 96 | 15 | 1 | 135 | 222 | 36 | 131 | 4.34e-45 | 147 |
MS.gene88155.t1 | MTR_3g466830 | 48.649 | 148 | 75 | 1 | 3 | 150 | 2 | 148 | 8.12e-45 | 147 |
MS.gene88155.t1 | MTR_5g075380 | 47.020 | 151 | 79 | 1 | 1 | 151 | 1 | 150 | 1.05e-44 | 147 |
MS.gene88155.t1 | MTR_4g063790 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 9.59e-44 | 145 |
MS.gene88155.t1 | MTR_3g467080 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 7.66e-42 | 140 |
MS.gene88155.t1 | MTR_3g466890 | 45.946 | 148 | 79 | 1 | 3 | 150 | 2 | 148 | 1.12e-40 | 137 |
MS.gene88155.t1 | MTR_5g047580 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 2.51e-40 | 135 |
MS.gene88155.t1 | MTR_3g031100 | 33.929 | 224 | 136 | 4 | 1 | 219 | 1 | 217 | 1.93e-39 | 136 |
MS.gene88155.t1 | MTR_2g016210 | 38.418 | 177 | 108 | 1 | 1 | 176 | 1 | 177 | 1.26e-38 | 134 |
MS.gene88155.t1 | MTR_1g077390 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 2.98e-37 | 128 |
MS.gene88155.t1 | MTR_7g011950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 6.18e-35 | 122 |
MS.gene88155.t1 | MTR_1g090783 | 40.816 | 147 | 85 | 2 | 3 | 149 | 2 | 146 | 1.14e-34 | 121 |
MS.gene88155.t1 | MTR_1g077320 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 5.33e-34 | 120 |
MS.gene88155.t1 | MTR_3g465410 | 45.082 | 122 | 67 | 0 | 29 | 150 | 1 | 122 | 8.05e-34 | 119 |
MS.gene88155.t1 | MTR_1g090710 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 1.53e-33 | 118 |
MS.gene88155.t1 | MTR_1g090697 | 40.000 | 150 | 88 | 2 | 1 | 150 | 1 | 148 | 2.01e-33 | 118 |
MS.gene88155.t1 | MTR_4g028720 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 3.25e-33 | 117 |
MS.gene88155.t1 | MTR_4g028800 | 77.143 | 70 | 14 | 1 | 1 | 70 | 1 | 68 | 2.09e-32 | 113 |
MS.gene88155.t1 | MTR_1g077300 | 42.949 | 156 | 85 | 2 | 1 | 156 | 1 | 152 | 2.59e-32 | 115 |
MS.gene88155.t1 | MTR_1g084950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 4.79e-32 | 114 |
MS.gene88155.t1 | MTR_7g055800 | 52.586 | 116 | 27 | 2 | 1 | 116 | 1 | 88 | 1.28e-30 | 108 |
MS.gene88155.t1 | MTR_3g031240 | 34.810 | 158 | 99 | 2 | 1 | 156 | 1 | 156 | 1.74e-29 | 108 |
MS.gene88155.t1 | MTR_3g466900 | 40.650 | 123 | 72 | 1 | 32 | 154 | 2 | 123 | 6.35e-29 | 105 |
MS.gene88155.t1 | MTR_7g055790 | 53.153 | 111 | 34 | 1 | 1 | 111 | 59 | 151 | 1.25e-26 | 100 |
MS.gene88155.t1 | MTR_3g466930 | 38.211 | 123 | 75 | 1 | 32 | 154 | 2 | 123 | 1.71e-26 | 99.8 |
MS.gene88155.t1 | MTR_7g055940 | 50.943 | 106 | 24 | 2 | 1 | 106 | 1 | 78 | 3.12e-25 | 94.7 |
MS.gene88155.t1 | MTR_2g035580 | 35.669 | 157 | 100 | 1 | 1 | 157 | 1 | 156 | 1.47e-24 | 95.5 |
MS.gene88155.t1 | MTR_4g019670 | 40.000 | 125 | 75 | 0 | 3 | 127 | 6 | 130 | 1.85e-24 | 101 |
MS.gene88155.t1 | MTR_7g106510 | 37.795 | 127 | 79 | 0 | 3 | 129 | 6 | 132 | 7.67e-24 | 99.4 |
MS.gene88155.t1 | MTR_5g047560 | 41.026 | 117 | 52 | 2 | 1 | 117 | 1 | 100 | 6.03e-22 | 88.2 |
MS.gene88155.t1 | MTR_3g093900 | 31.527 | 203 | 126 | 4 | 3 | 196 | 6 | 204 | 1.62e-21 | 92.8 |
MS.gene88155.t1 | MTR_2g035590 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 2.47e-19 | 80.1 |
MS.gene88155.t1 | MTR_4g084780 | 39.450 | 109 | 50 | 2 | 76 | 168 | 3 | 111 | 8.07e-14 | 67.0 |
MS.gene88155.t1 | MTR_6g018920 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 1.60e-13 | 68.9 |
MS.gene88155.t1 | MTR_1g114730 | 31.783 | 129 | 76 | 4 | 1 | 123 | 1 | 123 | 1.96e-13 | 68.9 |
MS.gene88155.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.14e-13 | 68.6 |
MS.gene88155.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 2.87e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88155.t1 | AT5G48670 | 54.839 | 155 | 67 | 2 | 1 | 154 | 1 | 153 | 4.36e-46 | 155 |
MS.gene88155.t1 | AT5G26630 | 42.439 | 205 | 107 | 2 | 1 | 195 | 1 | 204 | 1.19e-41 | 141 |
MS.gene88155.t1 | AT1G65300 | 44.737 | 152 | 83 | 1 | 3 | 154 | 2 | 152 | 5.27e-41 | 141 |
MS.gene88155.t1 | AT1G65330 | 45.395 | 152 | 82 | 1 | 3 | 154 | 2 | 152 | 9.51e-40 | 138 |
MS.gene88155.t1 | AT5G26650 | 45.000 | 140 | 76 | 1 | 5 | 144 | 3 | 141 | 1.63e-36 | 132 |
MS.gene88155.t1 | AT5G27960 | 45.926 | 135 | 72 | 1 | 5 | 139 | 3 | 136 | 2.86e-36 | 130 |
MS.gene88155.t1 | AT1G31630 | 39.865 | 148 | 87 | 2 | 3 | 150 | 2 | 147 | 1.55e-35 | 129 |
MS.gene88155.t1 | AT2G28700 | 38.636 | 176 | 101 | 3 | 1 | 174 | 1 | 171 | 6.19e-34 | 124 |
MS.gene88155.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 4.90e-33 | 119 |
MS.gene88155.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 2.19e-32 | 114 |
MS.gene88155.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 2.20e-32 | 118 |
MS.gene88155.t1 | AT3G05860 | 37.267 | 161 | 100 | 1 | 1 | 161 | 1 | 160 | 3.12e-32 | 118 |
MS.gene88155.t1 | AT1G31640 | 39.189 | 148 | 88 | 2 | 3 | 150 | 2 | 147 | 4.46e-32 | 122 |
MS.gene88155.t1 | AT5G26580 | 36.111 | 144 | 77 | 2 | 1 | 144 | 1 | 129 | 4.89e-25 | 101 |
MS.gene88155.t1 | AT1G22590 | 30.247 | 162 | 109 | 1 | 1 | 162 | 1 | 158 | 2.22e-24 | 95.1 |
MS.gene88155.t1 | AT5G06500 | 33.758 | 157 | 102 | 2 | 1 | 157 | 1 | 155 | 1.95e-21 | 89.4 |
MS.gene88155.t1 | AT2G40210 | 40.157 | 127 | 75 | 1 | 1 | 127 | 1 | 126 | 2.24e-19 | 85.9 |
MS.gene88155.t1 | AT5G58890 | 41.593 | 113 | 55 | 5 | 6 | 109 | 6 | 116 | 3.67e-16 | 76.3 |
MS.gene88155.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.83e-13 | 68.2 |
MS.gene88155.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.83e-13 | 68.2 |
MS.gene88155.t1 | AT2G15660 | 27.027 | 148 | 94 | 3 | 38 | 176 | 31 | 173 | 4.42e-12 | 64.3 |
MS.gene88155.t1 | AT5G27944 | 32.727 | 110 | 62 | 3 | 24 | 131 | 41 | 140 | 8.71e-11 | 60.1 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.3:-68846071 | MS.gene88155:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.3:-68846192 | MS.gene88155:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.252012 | 4.3:+68846261 | None:intergenic |
TCCTTCAAAGGTAGTAAATC+AGG | 0.298213 | 4.3:+68846041 | None:intergenic |
AAGAAAGGGTCTATTGAAAA+AGG | 0.312767 | 4.3:-68846621 | MS.gene88155:CDS |
CCCTGATTTACTACCTTTGA+AGG | 0.324619 | 4.3:-68846042 | MS.gene88155:CDS |
ATGAGCCTCAACCAGAGATT+TGG | 0.345216 | 4.3:-68846541 | MS.gene88155:CDS |
ATCTCTGGTTGAGGCTCATA+AGG | 0.350685 | 4.3:+68846545 | None:intergenic |
AAAATGTCATCACCATTAAT+AGG | 0.355958 | 4.3:+68846149 | None:intergenic |
TTTGCAAAGTCAATTATTGA+TGG | 0.379269 | 4.3:-68846129 | MS.gene88155:CDS |
GAAGGACATTGGTAGACATT+TGG | 0.385901 | 4.3:-68846252 | MS.gene88155:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.3:-68846191 | MS.gene88155:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.3:-68846201 | MS.gene88155:CDS |
TCTGGTGAAGGCCAAATCTC+TGG | 0.429918 | 4.3:+68846530 | None:intergenic |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.3:-68846270 | MS.gene88155:CDS |
CACAACCATGGCTAGAAGTA+AGG | 0.461347 | 4.3:-68846699 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.3:+68846559 | None:intergenic |
ATCATACAAGAAAAGAAGAA+AGG | 0.473094 | 4.3:-68846636 | MS.gene88155:CDS |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.3:-68846426 | MS.gene88155:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.3:-68846120 | MS.gene88155:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.3:-68846292 | MS.gene88155:CDS |
CATGTTGGGATACCTATTAA+TGG | 0.485702 | 4.3:-68846161 | MS.gene88155:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.3:+68846206 | None:intergenic |
GATGCTGCTGGAGGTGATAG+TGG | 0.492236 | 4.3:+68846218 | None:intergenic |
TATCACCTCCAGCAGCATCT+AGG | 0.496968 | 4.3:-68846214 | MS.gene88155:CDS |
TTATGGGTCATGGACATGTT+GGG | 0.500968 | 4.3:-68846175 | MS.gene88155:CDS |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.3:+68846667 | None:intergenic |
ATTATGGGTCATGGACATGT+TGG | 0.516074 | 4.3:-68846176 | MS.gene88155:CDS |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.3:-68846435 | MS.gene88155:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.3:-68846263 | MS.gene88155:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.521926 | 4.3:-68846185 | MS.gene88155:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.3:+68846438 | None:intergenic |
TCATACAAGAAAAGAAGAAA+GGG | 0.526600 | 4.3:-68846635 | MS.gene88155:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.3:+68846694 | None:intergenic |
GGACATTGGTAGACATTTGG+CGG | 0.537707 | 4.3:-68846249 | MS.gene88155:CDS |
ATGTATCATTGTCTCAATGA+AGG | 0.546520 | 4.3:-68846344 | MS.gene88155:CDS |
TCTCTGGTTGAGGCTCATAA+GGG | 0.546756 | 4.3:+68846546 | None:intergenic |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.3:+68846071 | None:intergenic |
GTGCAAGAGACAGTGCCCTT+TGG | 0.557727 | 4.3:-68846086 | MS.gene88155:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.3:-68846569 | MS.gene88155:CDS |
CCTTCAAAGGTAGTAAATCA+GGG | 0.575295 | 4.3:+68846042 | None:intergenic |
GAGATTTGGCCTTCACCAGA+GGG | 0.575380 | 4.3:-68846527 | MS.gene88155:CDS |
GAAGGCCAAATCTCTGGTTG+AGG | 0.576852 | 4.3:+68846536 | None:intergenic |
TGTGCACAACAATATTTCAA+CGG | 0.585275 | 4.3:-68846315 | MS.gene88155:CDS |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.3:+68846070 | None:intergenic |
ATTGAGAAAAGATCCTTCAA+AGG | 0.601093 | 4.3:+68846029 | None:intergenic |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.3:+68846583 | None:intergenic |
GATTTGGCCTTCACCAGAGG+GGG | 0.601928 | 4.3:-68846525 | MS.gene88155:CDS |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.3:-68846113 | MS.gene88155:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.3:-68846436 | MS.gene88155:CDS |
AGAGATTTGGCCTTCACCAG+AGG | 0.616752 | 4.3:-68846528 | MS.gene88155:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.3:+68846565 | None:intergenic |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.3:-68846664 | MS.gene88155:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.3:-68846117 | MS.gene88155:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.3:+68846209 | None:intergenic |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.3:-68846596 | MS.gene88155:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.3:+68846582 | None:intergenic |
AGATTTGGCCTTCACCAGAG+GGG | 0.703414 | 4.3:-68846526 | MS.gene88155:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATGTCATCACCATTAAT+AGG | + | chr4.3:68846571-68846590 | None:intergenic | 25.0% |
! | ATCATACAAGAAAAGAAGAA+AGG | - | chr4.3:68846081-68846100 | MS.gene88155:CDS | 25.0% |
! | TCATACAAGAAAAGAAGAAA+GGG | - | chr4.3:68846082-68846101 | MS.gene88155:CDS | 25.0% |
! | TTTGCAAAGTCAATTATTGA+TGG | - | chr4.3:68846588-68846607 | MS.gene88155:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.3:68846425-68846444 | MS.gene88155:CDS | 25.0% |
AAGAAAGGGTCTATTGAAAA+AGG | - | chr4.3:68846096-68846115 | MS.gene88155:CDS | 30.0% | |
ATGTATCATTGTCTCAATGA+AGG | - | chr4.3:68846373-68846392 | MS.gene88155:CDS | 30.0% | |
ATTGAGAAAAGATCCTTCAA+AGG | + | chr4.3:68846691-68846710 | None:intergenic | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.3:68846447-68846466 | MS.gene88155:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.3:68846459-68846478 | None:intergenic | 30.0% | |
TGTGCACAACAATATTTCAA+CGG | - | chr4.3:68846402-68846421 | MS.gene88155:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.3:68846597-68846616 | MS.gene88155:CDS | 30.0% |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.3:68846281-68846300 | MS.gene88155:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.3:68846282-68846301 | MS.gene88155:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.3:68846526-68846545 | MS.gene88155:CDS | 35.0% | |
CATGTTGGGATACCTATTAA+TGG | - | chr4.3:68846556-68846575 | MS.gene88155:CDS | 35.0% | |
CCTTCAAAGGTAGTAAATCA+GGG | + | chr4.3:68846678-68846697 | None:intergenic | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.3:68846454-68846473 | MS.gene88155:CDS | 35.0% | |
TCCTTCAAAGGTAGTAAATC+AGG | + | chr4.3:68846679-68846698 | None:intergenic | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.3:68846282-68846301 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.3:68846600-68846619 | MS.gene88155:CDS | 35.0% |
ATTATGGGTCATGGACATGT+TGG | - | chr4.3:68846541-68846560 | MS.gene88155:CDS | 40.0% | |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.3:68846649-68846668 | None:intergenic | 40.0% | |
CCCTGATTTACTACCTTTGA+AGG | - | chr4.3:68846675-68846694 | MS.gene88155:CDS | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.3:68846532-68846551 | MS.gene88155:CDS | 40.0% | |
GAAGGACATTGGTAGACATT+TGG | - | chr4.3:68846465-68846484 | MS.gene88155:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.3:68846525-68846544 | MS.gene88155:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.3:68846053-68846072 | MS.gene88155:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.3:68846650-68846669 | None:intergenic | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.3:68846053-68846072 | None:intergenic | 40.0% | |
TTATGGGTCATGGACATGTT+GGG | - | chr4.3:68846542-68846561 | MS.gene88155:CDS | 40.0% | |
!! | CGTCATGAATTTTGAGAGCA+CGG | + | chr4.3:68846224-68846243 | None:intergenic | 40.0% |
!! | TGAATTTTGAGAGCACGGAT+TGG | + | chr4.3:68846219-68846238 | None:intergenic | 40.0% |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.3:68846516-68846535 | MS.gene88155:CDS | 45.0% | |
ATCTCTGGTTGAGGCTCATA+AGG | + | chr4.3:68846175-68846194 | None:intergenic | 45.0% | |
ATGAGCCTCAACCAGAGATT+TGG | - | chr4.3:68846176-68846195 | MS.gene88155:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.3:68846646-68846665 | MS.gene88155:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.3:68846161-68846180 | None:intergenic | 45.0% | |
GGACATTGGTAGACATTTGG+CGG | - | chr4.3:68846468-68846487 | MS.gene88155:CDS | 45.0% | |
TCTCTGGTTGAGGCTCATAA+GGG | + | chr4.3:68846174-68846193 | None:intergenic | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.3:68846291-68846310 | MS.gene88155:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.3:68846137-68846156 | None:intergenic | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.3:68846148-68846167 | MS.gene88155:CDS | 50.0% | |
GAAGGCCAAATCTCTGGTTG+AGG | + | chr4.3:68846184-68846203 | None:intergenic | 50.0% | |
TATCACCTCCAGCAGCATCT+AGG | - | chr4.3:68846503-68846522 | MS.gene88155:CDS | 50.0% | |
TCTGGTGAAGGCCAAATCTC+TGG | + | chr4.3:68846190-68846209 | None:intergenic | 50.0% | |
! | AGAGATTTGGCCTTCACCAG+AGG | - | chr4.3:68846189-68846208 | MS.gene88155:CDS | 50.0% |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.3:68846191-68846210 | MS.gene88155:CDS | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.3:68846190-68846209 | MS.gene88155:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.3:68846604-68846623 | MS.gene88155:CDS | 50.0% |
AGGGCCATACACTATGGCAC+AGG | + | chr4.3:68846155-68846174 | None:intergenic | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.3:68846138-68846157 | None:intergenic | 55.0% | |
GATGCTGCTGGAGGTGATAG+TGG | + | chr4.3:68846502-68846521 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.3:68846121-68846140 | MS.gene88155:CDS | 55.0% | |
GTGCAAGAGACAGTGCCCTT+TGG | - | chr4.3:68846631-68846650 | MS.gene88155:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.3:68846514-68846533 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.3:68846192-68846211 | MS.gene88155:CDS | 55.0% |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.3:68846202-68846221 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.3:68846511-68846530 | None:intergenic | 60.0% | |
!! | AGCACGGATTGGACCCCCTC+TGG | + | chr4.3:68846208-68846227 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 68846025 | 68846714 | 68846025 | ID=MS.gene88155 |
chr4.3 | mRNA | 68846025 | 68846714 | 68846025 | ID=MS.gene88155.t1;Parent=MS.gene88155 |
chr4.3 | exon | 68846025 | 68846714 | 68846025 | ID=MS.gene88155.t1.exon1;Parent=MS.gene88155.t1 |
chr4.3 | CDS | 68846025 | 68846714 | 68846025 | ID=cds.MS.gene88155.t1;Parent=MS.gene88155.t1 |
Gene Sequence |
Protein sequence |