Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88163.t1 | XP_003605494.2 | 74.4 | 242 | 49 | 1 | 4 | 245 | 3 | 231 | 8.20E-93 | 350.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88163.t1 | Q9FJK3 | 52.5 | 158 | 74 | 1 | 4 | 161 | 3 | 159 | 3.8e-38 | 159.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88163.t1 | G7JN54 | 74.4 | 242 | 49 | 1 | 4 | 245 | 3 | 231 | 5.9e-93 | 350.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene88163.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88163.t1 | MTR_4g032290 | 79.752 | 242 | 36 | 1 | 4 | 245 | 3 | 231 | 8.62e-131 | 369 |
MS.gene88163.t1 | MTR_4g031910 | 79.752 | 242 | 34 | 1 | 4 | 245 | 3 | 229 | 2.11e-130 | 368 |
MS.gene88163.t1 | MTR_8g036130 | 60.558 | 251 | 84 | 4 | 4 | 245 | 3 | 247 | 4.20e-96 | 281 |
MS.gene88163.t1 | MTR_4g032620 | 57.959 | 245 | 89 | 3 | 1 | 245 | 1 | 231 | 6.44e-95 | 278 |
MS.gene88163.t1 | MTR_4g032260 | 82.468 | 154 | 27 | 0 | 4 | 157 | 3 | 156 | 1.17e-82 | 244 |
MS.gene88163.t1 | MTR_3g065100 | 48.133 | 241 | 118 | 3 | 4 | 242 | 3 | 238 | 3.81e-63 | 197 |
MS.gene88163.t1 | MTR_3g466980 | 55.556 | 153 | 67 | 1 | 4 | 156 | 3 | 154 | 1.10e-58 | 185 |
MS.gene88163.t1 | MTR_4g032270 | 74.545 | 110 | 14 | 1 | 136 | 245 | 36 | 131 | 2.70e-52 | 166 |
MS.gene88163.t1 | MTR_2g035610 | 73.333 | 120 | 32 | 0 | 4 | 123 | 3 | 122 | 3.85e-50 | 160 |
MS.gene88163.t1 | MTR_3g466830 | 44.720 | 161 | 88 | 1 | 4 | 164 | 2 | 161 | 8.89e-46 | 150 |
MS.gene88163.t1 | MTR_3g466890 | 40.881 | 159 | 93 | 1 | 4 | 162 | 2 | 159 | 2.32e-39 | 134 |
MS.gene88163.t1 | MTR_4g063790 | 38.650 | 163 | 100 | 0 | 4 | 166 | 3 | 165 | 2.80e-39 | 134 |
MS.gene88163.t1 | MTR_5g075380 | 42.667 | 150 | 85 | 1 | 6 | 155 | 5 | 153 | 4.06e-39 | 133 |
MS.gene88163.t1 | MTR_5g047580 | 42.208 | 154 | 87 | 2 | 4 | 157 | 3 | 154 | 1.18e-36 | 127 |
MS.gene88163.t1 | MTR_3g031100 | 40.127 | 157 | 93 | 1 | 1 | 157 | 1 | 156 | 1.65e-36 | 129 |
MS.gene88163.t1 | MTR_3g467080 | 38.312 | 154 | 95 | 0 | 4 | 157 | 3 | 156 | 1.11e-35 | 124 |
MS.gene88163.t1 | MTR_2g016210 | 39.474 | 152 | 92 | 0 | 6 | 157 | 5 | 156 | 1.34e-35 | 127 |
MS.gene88163.t1 | MTR_7g011950 | 42.105 | 152 | 86 | 2 | 4 | 155 | 3 | 152 | 1.20e-31 | 114 |
MS.gene88163.t1 | MTR_1g077320 | 42.105 | 152 | 86 | 2 | 4 | 155 | 3 | 152 | 1.29e-31 | 114 |
MS.gene88163.t1 | MTR_1g077390 | 37.013 | 154 | 95 | 2 | 4 | 157 | 3 | 154 | 2.00e-31 | 113 |
MS.gene88163.t1 | MTR_1g090697 | 37.179 | 156 | 96 | 2 | 4 | 159 | 3 | 156 | 5.22e-31 | 112 |
MS.gene88163.t1 | MTR_1g090783 | 37.013 | 154 | 95 | 2 | 4 | 157 | 2 | 153 | 6.39e-31 | 112 |
MS.gene88163.t1 | MTR_3g465410 | 37.956 | 137 | 85 | 0 | 30 | 166 | 1 | 137 | 8.53e-31 | 111 |
MS.gene88163.t1 | MTR_1g084950 | 40.909 | 154 | 89 | 2 | 4 | 157 | 3 | 154 | 1.16e-30 | 111 |
MS.gene88163.t1 | MTR_4g028720 | 40.260 | 154 | 90 | 2 | 4 | 157 | 3 | 154 | 3.77e-30 | 110 |
MS.gene88163.t1 | MTR_1g090710 | 35.849 | 159 | 100 | 2 | 1 | 159 | 1 | 157 | 4.52e-30 | 110 |
MS.gene88163.t1 | MTR_4g028800 | 77.273 | 66 | 13 | 1 | 6 | 71 | 5 | 68 | 1.12e-29 | 106 |
MS.gene88163.t1 | MTR_3g466900 | 37.692 | 130 | 80 | 1 | 33 | 162 | 2 | 130 | 4.84e-29 | 106 |
MS.gene88163.t1 | MTR_7g055800 | 50.427 | 117 | 30 | 2 | 4 | 120 | 3 | 91 | 3.39e-28 | 103 |
MS.gene88163.t1 | MTR_1g077300 | 40.252 | 159 | 91 | 2 | 4 | 162 | 3 | 157 | 6.29e-28 | 104 |
MS.gene88163.t1 | MTR_3g031240 | 32.075 | 159 | 107 | 1 | 1 | 159 | 1 | 158 | 1.17e-27 | 104 |
MS.gene88163.t1 | MTR_3g466930 | 36.154 | 130 | 82 | 1 | 33 | 162 | 2 | 130 | 5.58e-27 | 101 |
MS.gene88163.t1 | MTR_7g106510 | 40.625 | 128 | 76 | 0 | 3 | 130 | 5 | 132 | 6.98e-26 | 105 |
MS.gene88163.t1 | MTR_4g019670 | 41.406 | 128 | 75 | 0 | 3 | 130 | 5 | 132 | 1.06e-25 | 105 |
MS.gene88163.t1 | MTR_3g093900 | 34.965 | 143 | 93 | 0 | 3 | 145 | 5 | 147 | 1.44e-24 | 102 |
MS.gene88163.t1 | MTR_7g055790 | 51.376 | 109 | 35 | 1 | 4 | 112 | 61 | 151 | 7.21e-24 | 94.0 |
MS.gene88163.t1 | MTR_2g035590 | 55.670 | 97 | 42 | 1 | 75 | 170 | 1 | 97 | 1.67e-22 | 88.6 |
MS.gene88163.t1 | MTR_2g035580 | 34.694 | 147 | 95 | 1 | 11 | 157 | 10 | 155 | 2.13e-22 | 90.1 |
MS.gene88163.t1 | MTR_7g055940 | 49.038 | 104 | 25 | 2 | 4 | 107 | 3 | 78 | 5.10e-22 | 87.0 |
MS.gene88163.t1 | MTR_5g047560 | 39.130 | 115 | 53 | 2 | 4 | 118 | 3 | 100 | 1.89e-19 | 82.0 |
MS.gene88163.t1 | MTR_6g005450 | 35.135 | 111 | 65 | 4 | 4 | 108 | 3 | 112 | 5.53e-13 | 67.8 |
MS.gene88163.t1 | MTR_6g018920 | 32.432 | 111 | 68 | 4 | 4 | 108 | 3 | 112 | 4.88e-12 | 65.1 |
MS.gene88163.t1 | MTR_4g084780 | 57.692 | 52 | 22 | 0 | 75 | 126 | 1 | 52 | 7.80e-12 | 62.0 |
MS.gene88163.t1 | MTR_1g114730 | 32.432 | 111 | 68 | 3 | 4 | 108 | 3 | 112 | 8.01e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88163.t1 | AT5G48670 | 52.532 | 158 | 74 | 1 | 4 | 161 | 3 | 159 | 7.13e-45 | 153 |
MS.gene88163.t1 | AT1G65300 | 42.484 | 153 | 87 | 1 | 4 | 156 | 2 | 153 | 3.85e-38 | 134 |
MS.gene88163.t1 | AT1G65330 | 39.227 | 181 | 96 | 2 | 4 | 184 | 2 | 168 | 4.83e-38 | 134 |
MS.gene88163.t1 | AT5G26630 | 38.605 | 215 | 119 | 2 | 4 | 218 | 3 | 204 | 8.78e-37 | 129 |
MS.gene88163.t1 | AT5G26650 | 39.024 | 164 | 99 | 1 | 6 | 169 | 3 | 165 | 6.30e-35 | 128 |
MS.gene88163.t1 | AT5G27960 | 38.415 | 164 | 100 | 1 | 6 | 169 | 3 | 165 | 2.74e-34 | 125 |
MS.gene88163.t1 | AT1G31630 | 37.342 | 158 | 97 | 2 | 4 | 161 | 2 | 157 | 1.46e-33 | 124 |
MS.gene88163.t1 | AT1G31640 | 38.411 | 151 | 91 | 2 | 4 | 154 | 2 | 150 | 1.34e-31 | 121 |
MS.gene88163.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 30 | 122 | 1 | 93 | 6.74e-31 | 111 |
MS.gene88163.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 1.48e-30 | 113 |
MS.gene88163.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 6.35e-30 | 112 |
MS.gene88163.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 6.85e-30 | 112 |
MS.gene88163.t1 | AT2G28700 | 36.875 | 160 | 96 | 2 | 4 | 161 | 3 | 159 | 2.20e-27 | 107 |
MS.gene88163.t1 | AT1G22590 | 31.847 | 157 | 102 | 2 | 1 | 157 | 1 | 152 | 2.39e-24 | 95.5 |
MS.gene88163.t1 | AT5G26580 | 35.762 | 151 | 82 | 2 | 6 | 156 | 5 | 140 | 7.55e-24 | 98.2 |
MS.gene88163.t1 | AT5G06500 | 37.500 | 120 | 75 | 0 | 4 | 123 | 3 | 122 | 2.43e-19 | 84.3 |
MS.gene88163.t1 | AT2G40210 | 38.346 | 133 | 80 | 2 | 4 | 135 | 3 | 134 | 4.45e-18 | 82.8 |
MS.gene88163.t1 | AT5G58890 | 37.008 | 127 | 69 | 5 | 7 | 124 | 6 | 130 | 8.62e-16 | 75.5 |
MS.gene88163.t1 | AT5G55690 | 41.772 | 79 | 38 | 3 | 1 | 72 | 1 | 78 | 3.44e-12 | 65.1 |
MS.gene88163.t1 | AT5G55690 | 41.772 | 79 | 38 | 3 | 1 | 72 | 1 | 78 | 3.44e-12 | 65.1 |
MS.gene88163.t1 | AT2G15660 | 23.188 | 207 | 117 | 6 | 1 | 199 | 1 | 173 | 2.09e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTTGGTGAGTTCAATTC+TGG | 0.206411 | 4.3:-68741275 | MS.gene88163:CDS |
GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | 4.3:-68741396 | MS.gene88163:CDS |
TGAAACAAAGAAAAGATAAT+AGG | 0.275750 | 4.3:-68741658 | MS.gene88163:CDS |
GTGAGTTCAATTCTGGAGTT+TGG | 0.312335 | 4.3:-68741268 | MS.gene88163:CDS |
AACGATGGGTCTATTGAAAA+AGG | 0.323964 | 4.3:-68741891 | MS.gene88163:CDS |
TTCCTTCAAGGTAATAAATC+AGG | 0.333441 | 4.3:+68741245 | None:intergenic |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.3:-68741811 | MS.gene88163:CDS |
AAACCAAGTCCAACTCAAAA+TGG | 0.356752 | 4.3:-68741456 | MS.gene88163:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.373927 | 4.3:+68741815 | None:intergenic |
ATAATGTCATCATCATTAAT+AGG | 0.375800 | 4.3:+68741353 | None:intergenic |
TATGCAAATTCAATTATTGA+TGG | 0.376193 | 4.3:-68741333 | MS.gene88163:CDS |
GGCCTGATTTATTACCTTGA+AGG | 0.402135 | 4.3:-68741247 | None:intergenic |
TCTTCAGCCTTCAGAACCCT+TGG | 0.412827 | 4.3:+68741689 | None:intergenic |
GAAACAAAGAAAAGATAATA+GGG | 0.419680 | 4.3:-68741657 | MS.gene88163:CDS |
TCAATTATTGATGGACTCAA+TGG | 0.420174 | 4.3:-68741324 | MS.gene88163:CDS |
AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | 4.3:-68741395 | MS.gene88163:CDS |
GAATGACGTTGGTAGACGTT+TGG | 0.432671 | 4.3:-68741522 | MS.gene88163:CDS |
CTAGATGCTGCTGGAGGTGG+TGG | 0.448669 | 4.3:+68741419 | None:intergenic |
CTCCTAGATGCTGCTGGAGG+TGG | 0.449911 | 4.3:+68741416 | None:intergenic |
TTTGGTGAAGGCCAAATCTC+AGG | 0.450516 | 4.3:+68741800 | None:intergenic |
AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | 4.3:-68741405 | MS.gene88163:CDS |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.3:+68741829 | None:intergenic |
TTGGTGTCAAGAAGGTCTCT+TGG | 0.471861 | 4.3:+68741708 | None:intergenic |
TCTTCACTCCTAGATGCTGC+TGG | 0.474575 | 4.3:+68741410 | None:intergenic |
TTATGGGTCATGGCCATGTT+GGG | 0.476409 | 4.3:-68741379 | MS.gene88163:CDS |
TTGGTAGACGTTTGGAAGCA+TGG | 0.476773 | 4.3:-68741514 | MS.gene88163:CDS |
GATGCTGCTGGAGGTGGTGG+TGG | 0.482784 | 4.3:+68741422 | None:intergenic |
GAGATTTGGCCTTCACCAAA+GGG | 0.486242 | 4.3:-68741797 | MS.gene88163:CDS |
AACCATGGGTAGAAGAAGTA+AGG | 0.501192 | 4.3:-68741969 | None:intergenic |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.3:+68741937 | None:intergenic |
AACCTTACTTCTTCTACCCA+TGG | 0.505973 | 4.3:+68741967 | None:intergenic |
CTTGACACCAAGGGTTCTGA+AGG | 0.508808 | 4.3:-68741696 | MS.gene88163:CDS |
TGGATATGAGTTATCTTGCT+TGG | 0.509186 | 4.3:-68741562 | MS.gene88163:CDS |
CCAGAATTGAACTCACCAAA+TGG | 0.515152 | 4.3:+68741275 | None:intergenic |
GTGCTAGATACAGTGCCATT+TGG | 0.525062 | 4.3:-68741290 | MS.gene88163:CDS |
CACCACCTCCAGCAGCATCT+AGG | 0.525577 | 4.3:-68741418 | MS.gene88163:CDS |
TCTCAGGTTGAGGCTCATAA+GGG | 0.533923 | 4.3:+68741816 | None:intergenic |
CAGAACCCTTGGTGTCAAGA+AGG | 0.540388 | 4.3:+68741700 | None:intergenic |
TGAGATTTGGCCTTCACCAA+AGG | 0.542270 | 4.3:-68741798 | MS.gene88163:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.549964 | 4.3:-68741389 | MS.gene88163:CDS |
TGGTAGACGTTTGGAAGCAT+GGG | 0.550080 | 4.3:-68741513 | MS.gene88163:CDS |
ATGGCTCAATGTCTTAATGA+AGG | 0.551341 | 4.3:-68741614 | MS.gene88163:CDS |
GAAGCTTGTGCCATAGTGTA+TGG | 0.557418 | 4.3:-68741839 | MS.gene88163:CDS |
ATTATGGGTCATGGCCATGT+TGG | 0.565284 | 4.3:-68741380 | MS.gene88163:CDS |
TACCAACGTCATTCAAATTG+TGG | 0.585285 | 4.3:+68741531 | None:intergenic |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.3:+68741366 | None:intergenic |
ATCATACAAGAAAAGAACGA+TGG | 0.597939 | 4.3:-68741906 | MS.gene88163:CDS |
GAAGGCCAAATCTCAGGTTG+AGG | 0.598100 | 4.3:+68741806 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.3:-68741317 | MS.gene88163:CDS |
TCATACAAGAAAAGAACGAT+GGG | 0.607262 | 4.3:-68741905 | MS.gene88163:CDS |
GACCACAATTTGAATGACGT+TGG | 0.614790 | 4.3:-68741533 | MS.gene88163:CDS |
GATTTGGCCTTCACCAAAGG+GGG | 0.616981 | 4.3:-68741795 | MS.gene88163:CDS |
ACAAGCTTCAATGCCACAGA+GGG | 0.623111 | 4.3:+68741853 | None:intergenic |
GCAAGAGATGACAATACTCA+TGG | 0.625488 | 4.3:-68741633 | MS.gene88163:CDS |
AGAGACCTTCTTGACACCAA+GGG | 0.639040 | 4.3:-68741705 | MS.gene88163:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.640366 | 4.3:-68741321 | MS.gene88163:CDS |
GCACGACAATATGTCAACAA+TGG | 0.641071 | 4.3:-68741582 | MS.gene88163:CDS |
CACAAGCTTCAATGCCACAG+AGG | 0.641156 | 4.3:+68741852 | None:intergenic |
TCACTCCTAGATGCTGCTGG+AGG | 0.645942 | 4.3:+68741413 | None:intergenic |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.3:-68741934 | MS.gene88163:CDS |
AAGAGACCTTCTTGACACCA+AGG | 0.658463 | 4.3:-68741706 | MS.gene88163:CDS |
CCAAGTCCAACTCAAAATGG+CGG | 0.670547 | 4.3:-68741453 | MS.gene88163:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.3:-68741866 | MS.gene88163:CDS |
AGATTTGGCCTTCACCAAAG+GGG | 0.685819 | 4.3:-68741796 | MS.gene88163:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATGTCATCATCATTAAT+AGG | + | chr4.3:68741865-68741884 | None:intergenic | 20.0% |
!! | GAAACAAAGAAAAGATAATA+GGG | - | chr4.3:68741558-68741577 | MS.gene88163:CDS | 20.0% |
!! | TATGCAAATTCAATTATTGA+TGG | - | chr4.3:68741882-68741901 | MS.gene88163:CDS | 20.0% |
!! | TGAAACAAAGAAAAGATAAT+AGG | - | chr4.3:68741557-68741576 | MS.gene88163:CDS | 20.0% |
AGTGAAGAAATGGCAATTAT+GGG | - | chr4.3:68741820-68741839 | MS.gene88163:CDS | 30.0% | |
ATCATACAAGAAAAGAACGA+TGG | - | chr4.3:68741309-68741328 | MS.gene88163:CDS | 30.0% | |
TCATACAAGAAAAGAACGAT+GGG | - | chr4.3:68741310-68741329 | MS.gene88163:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.3:68741891-68741910 | MS.gene88163:CDS | 30.0% |
AAACCAAGTCCAACTCAAAA+TGG | - | chr4.3:68741759-68741778 | MS.gene88163:CDS | 35.0% | |
AACGATGGGTCTATTGAAAA+AGG | - | chr4.3:68741324-68741343 | MS.gene88163:CDS | 35.0% | |
ATGGCTCAATGTCTTAATGA+AGG | - | chr4.3:68741601-68741620 | MS.gene88163:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.3:68741852-68741871 | None:intergenic | 35.0% | |
GAGTGAAGAAATGGCAATTA+TGG | - | chr4.3:68741819-68741838 | MS.gene88163:CDS | 35.0% | |
TACCAACGTCATTCAAATTG+TGG | + | chr4.3:68741687-68741706 | None:intergenic | 35.0% | |
TGGATATGAGTTATCTTGCT+TGG | - | chr4.3:68741653-68741672 | MS.gene88163:CDS | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.3:68741894-68741913 | MS.gene88163:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.3:68741447-68741466 | None:intergenic | 35.0% |
AGCATCTAGGAGTGAAGAAA+TGG | - | chr4.3:68741810-68741829 | MS.gene88163:CDS | 40.0% | |
CCAGAATTGAACTCACCAAA+TGG | + | chr4.3:68741943-68741962 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.3:68741826-68741845 | MS.gene88163:CDS | 40.0% | |
GACCACAATTTGAATGACGT+TGG | - | chr4.3:68741682-68741701 | MS.gene88163:CDS | 40.0% | |
GCAAGAGATGACAATACTCA+TGG | - | chr4.3:68741582-68741601 | MS.gene88163:CDS | 40.0% | |
GCACGACAATATGTCAACAA+TGG | - | chr4.3:68741633-68741652 | MS.gene88163:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.3:68741281-68741300 | MS.gene88163:CDS | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.3:68741281-68741300 | None:intergenic | 40.0% | |
! | CCATTTGGTGAGTTCAATTC+TGG | - | chr4.3:68741940-68741959 | MS.gene88163:CDS | 40.0% |
!! | GTGAGTTCAATTCTGGAGTT+TGG | - | chr4.3:68741947-68741966 | MS.gene88163:CDS | 40.0% |
AAGAGACCTTCTTGACACCA+AGG | - | chr4.3:68741509-68741528 | MS.gene88163:CDS | 45.0% | |
ACAAGCTTCAATGCCACAGA+GGG | + | chr4.3:68741365-68741384 | None:intergenic | 45.0% | |
AGAGACCTTCTTGACACCAA+GGG | - | chr4.3:68741510-68741529 | MS.gene88163:CDS | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.3:68741404-68741423 | MS.gene88163:CDS | 45.0% | |
ATTATGGGTCATGGCCATGT+TGG | - | chr4.3:68741835-68741854 | MS.gene88163:CDS | 45.0% | |
CCAAGTCCAACTCAAAATGG+CGG | - | chr4.3:68741762-68741781 | MS.gene88163:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.3:68741389-68741408 | None:intergenic | 45.0% | |
GAAGCTTGTGCCATAGTGTA+TGG | - | chr4.3:68741376-68741395 | MS.gene88163:CDS | 45.0% | |
TTATGGGTCATGGCCATGTT+GGG | - | chr4.3:68741836-68741855 | MS.gene88163:CDS | 45.0% | |
TTGGTAGACGTTTGGAAGCA+TGG | - | chr4.3:68741701-68741720 | MS.gene88163:CDS | 45.0% | |
TTTGGTGAAGGCCAAATCTC+AGG | + | chr4.3:68741418-68741437 | None:intergenic | 45.0% | |
! | AGATTTGGCCTTCACCAAAG+GGG | - | chr4.3:68741419-68741438 | MS.gene88163:CDS | 45.0% |
! | GAATGACGTTGGTAGACGTT+TGG | - | chr4.3:68741693-68741712 | MS.gene88163:CDS | 45.0% |
! | GAGATTTGGCCTTCACCAAA+GGG | - | chr4.3:68741418-68741437 | MS.gene88163:CDS | 45.0% |
! | GTGCTAGATACAGTGCCATT+TGG | - | chr4.3:68741925-68741944 | MS.gene88163:CDS | 45.0% |
! | TGAGATTTGGCCTTCACCAA+AGG | - | chr4.3:68741417-68741436 | MS.gene88163:CDS | 45.0% |
! | TGGTAGACGTTTGGAAGCAT+GGG | - | chr4.3:68741702-68741721 | MS.gene88163:CDS | 45.0% |
!! | ATCTCAGGTTGAGGCTCATA+AGG | + | chr4.3:68741403-68741422 | None:intergenic | 45.0% |
!! | TCTCAGGTTGAGGCTCATAA+GGG | + | chr4.3:68741402-68741421 | None:intergenic | 45.0% |
!! | TTGGTGTCAAGAAGGTCTCT+TGG | + | chr4.3:68741510-68741529 | None:intergenic | 45.0% |
!! | TTGTTGCCGCCATTTTGAGT+TGG | + | chr4.3:68741771-68741790 | None:intergenic | 45.0% |
CACAAGCTTCAATGCCACAG+AGG | + | chr4.3:68741366-68741385 | None:intergenic | 50.0% | |
TCTTCACTCCTAGATGCTGC+TGG | + | chr4.3:68741808-68741827 | None:intergenic | 50.0% | |
TCTTCAGCCTTCAGAACCCT+TGG | + | chr4.3:68741529-68741548 | None:intergenic | 50.0% | |
! | CTTGACACCAAGGGTTCTGA+AGG | - | chr4.3:68741519-68741538 | MS.gene88163:CDS | 50.0% |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.3:68741412-68741431 | None:intergenic | 50.0% |
! | GATTTGGCCTTCACCAAAGG+GGG | - | chr4.3:68741420-68741439 | MS.gene88163:CDS | 50.0% |
!! | CAGAACCCTTGGTGTCAAGA+AGG | + | chr4.3:68741518-68741537 | None:intergenic | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.3:68741898-68741917 | MS.gene88163:CDS | 50.0% |
!!! | CCGCCATTTTGAGTTGGACT+TGG | + | chr4.3:68741765-68741784 | None:intergenic | 50.0% |
AGCACAGATTGGACCCCCTT+TGG | + | chr4.3:68741436-68741455 | None:intergenic | 55.0% | |
GATTGGACCCCCTTTGGTGA+AGG | + | chr4.3:68741430-68741449 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.3:68741349-68741368 | MS.gene88163:CDS | 55.0% | |
TCACTCCTAGATGCTGCTGG+AGG | + | chr4.3:68741805-68741824 | None:intergenic | 55.0% | |
CACCACCTCCAGCAGCATCT+AGG | - | chr4.3:68741797-68741816 | MS.gene88163:CDS | 60.0% | |
CTAGATGCTGCTGGAGGTGG+TGG | + | chr4.3:68741799-68741818 | None:intergenic | 60.0% | |
CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.3:68741802-68741821 | None:intergenic | 60.0% | |
! | GATGCTGCTGGAGGTGGTGG+TGG | + | chr4.3:68741796-68741815 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 68741250 | 68741987 | 68741250 | ID=MS.gene88163 |
chr4.3 | mRNA | 68741250 | 68741987 | 68741250 | ID=MS.gene88163.t1;Parent=MS.gene88163 |
chr4.3 | exon | 68741250 | 68741987 | 68741250 | ID=MS.gene88163.t1.exon1;Parent=MS.gene88163.t1 |
chr4.3 | CDS | 68741250 | 68741987 | 68741250 | ID=cds.MS.gene88163.t1;Parent=MS.gene88163.t1 |
Gene Sequence |
Protein sequence |