Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88390.t1 | ABD32238.1 | 81.1 | 318 | 32 | 11 | 1 | 309 | 1 | 299 | 7.60E-112 | 413.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88390.t1 | Q2HVP9 | 81.1 | 318 | 32 | 11 | 1 | 309 | 1 | 299 | 5.5e-112 | 413.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene88390.t1 | TF | NOZZLE |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88390.t1 | MTR_2g081240 | 84.688 | 320 | 17 | 12 | 1 | 309 | 1 | 299 | 2.00e-158 | 444 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTCACTGTTTCAGCTTA+TGG | 0.174976 | 2.4:-17057050 | MS.gene88390:CDS |
CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2.4:+17057093 | None:intergenic |
TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2.4:+17058573 | None:intergenic |
TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2.4:+17057100 | None:intergenic |
CAATAACAATAACACTGTTT+TGG | 0.275143 | 2.4:-17058658 | MS.gene88390:CDS |
GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2.4:+17058450 | None:intergenic |
AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2.4:+17058483 | None:intergenic |
GGTGGTGGTAACTATGGATA+TGG | 0.361187 | 2.4:-17058534 | MS.gene88390:CDS |
AGTGTTATTGTTATTGTTGT+TGG | 0.365355 | 2.4:+17058665 | None:intergenic |
AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2.4:-17057095 | MS.gene88390:CDS |
TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2.4:+17058870 | None:intergenic |
ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2.4:-17058566 | MS.gene88390:CDS |
ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2.4:+17058474 | None:intergenic |
AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2.4:+17057082 | None:intergenic |
TCATGAACATGATGATGATT+AGG | 0.458805 | 2.4:+17057665 | None:intergenic |
GTTGTTGGTGGTGGTAACTA+TGG | 0.459219 | 2.4:-17058540 | MS.gene88390:CDS |
AGAACAGAAGGTTGAGGTTG+AGG | 0.460961 | 2.4:+17057623 | None:intergenic |
GCTTGCTCAAACGTTGGTGC+TGG | 0.461104 | 2.4:-17058606 | MS.gene88390:CDS |
GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2.4:-17057696 | MS.gene88390:CDS |
AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2.4:-17057205 | MS.gene88390:CDS |
ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2.4:+17058429 | None:intergenic |
GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2.4:-17058844 | MS.gene88390:CDS |
GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2.4:-17058838 | MS.gene88390:CDS |
TCATCAAGATTGTGCTGAGT+TGG | 0.482620 | 2.4:+17057590 | None:intergenic |
GGTAACTATGGATATGGATC+TGG | 0.489747 | 2.4:-17058528 | MS.gene88390:CDS |
GTTGGAGCTTGCTCAAACGT+TGG | 0.497141 | 2.4:-17058612 | MS.gene88390:CDS |
TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2.4:-17057732 | MS.gene88390:intron |
AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2.4:-17057188 | MS.gene88390:CDS |
AACAGGGTCGTTGTTGGTGG+TGG | 0.507033 | 2.4:-17058549 | MS.gene88390:CDS |
AATAACAACAGGGTCGTTGT+TGG | 0.507101 | 2.4:-17058555 | MS.gene88390:CDS |
TTTGAGCAAGCTCCAACAAA+AGG | 0.507919 | 2.4:+17058618 | None:intergenic |
GCTCAAACGTTGGTGCTGGA+TGG | 0.518767 | 2.4:-17058602 | MS.gene88390:CDS |
CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2.4:-17057688 | MS.gene88390:CDS |
GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2.4:-17057713 | MS.gene88390:CDS |
TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2.4:+17058717 | None:intergenic |
AACAACAGGGTCGTTGTTGG+TGG | 0.551873 | 2.4:-17058552 | MS.gene88390:CDS |
AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2.4:-17057180 | MS.gene88390:CDS |
TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2.4:-17058851 | MS.gene88390:CDS |
GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2.4:+17057681 | None:intergenic |
GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2.4:+17057611 | None:intergenic |
GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2.4:+17058484 | None:intergenic |
TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2.4:+17057680 | None:intergenic |
GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2.4:-17057204 | MS.gene88390:CDS |
CTCACTGTTTCAGCTTATGG+AGG | 0.584570 | 2.4:-17057047 | MS.gene88390:CDS |
ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2.4:+17058705 | None:intergenic |
TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2.4:-17058819 | MS.gene88390:CDS |
GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2.4:+17058784 | None:intergenic |
TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2.4:-17057225 | MS.gene88390:intron |
GCAGAAAGAACAGAAGGTTG+AGG | 0.592292 | 2.4:+17057617 | None:intergenic |
AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2.4:-17057693 | MS.gene88390:CDS |
TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2.4:-17057208 | MS.gene88390:CDS |
GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2.4:-17057203 | MS.gene88390:CDS |
GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2.4:+17057083 | None:intergenic |
GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2.4:+17058726 | None:intergenic |
AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2.4:-17057185 | MS.gene88390:CDS |
AACTCAGCACAATCTTGATG+AGG | 0.646299 | 2.4:-17057588 | MS.gene88390:intron |
GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2.4:-17057184 | MS.gene88390:CDS |
TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2.4:-17058565 | MS.gene88390:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATATATTATACCTTG+AGG | + | chr2.4:17057519-17057538 | None:intergenic | 15.0% |
!! | ATTAAATTAAACATTGTATC+TGG | + | chr2.4:17058587-17058606 | None:intergenic | 15.0% |
!! | TTAACATTAATATCAACAAA+AGG | + | chr2.4:17057959-17057978 | None:intergenic | 15.0% |
!! | TTTCTGAATTAAAAAATTGA+TGG | - | chr2.4:17058663-17058682 | MS.gene88390:CDS | 15.0% |
!!! | TGAATAATTTGATTTTTTCT+TGG | - | chr2.4:17057850-17057869 | MS.gene88390:intron | 15.0% |
!!! | TGCAATGTTTAATTTTTTTT+TGG | - | chr2.4:17058447-17058466 | MS.gene88390:CDS | 15.0% |
!!! | TTTCAATTTTTCTAAGTTTA+GGG | - | chr2.4:17058630-17058649 | MS.gene88390:CDS | 15.0% |
!!! | TTTTCAATTTTTCTAAGTTT+AGG | - | chr2.4:17058629-17058648 | MS.gene88390:CDS | 15.0% |
!! | ACATAAATAACAAAAAGTAG+AGG | + | chr2.4:17057822-17057841 | None:intergenic | 20.0% |
!! | AGAAAATAACAAAACATAGA+AGG | + | chr2.4:17057746-17057765 | None:intergenic | 20.0% |
!! | TCAAAAAAAAAATCCACAAA+AGG | + | chr2.4:17058056-17058075 | None:intergenic | 20.0% |
!! | TTAACACTAATATCAACAAA+AGG | + | chr2.4:17058087-17058106 | None:intergenic | 20.0% |
!! | TTAGAAAAATTGAAAACACT+TGG | + | chr2.4:17058625-17058644 | None:intergenic | 20.0% |
!!! | GATTTTTTTCATGAAAAAGA+TGG | - | chr2.4:17058794-17058813 | MS.gene88390:CDS | 20.0% |
! | AAAAACAAAGGGAGAAAAAA+TGG | - | chr2.4:17057022-17057041 | MS.gene88390:CDS | 25.0% |
! | AAAACCAAGCAAAAAACAAA+GGG | - | chr2.4:17057011-17057030 | MS.gene88390:CDS | 25.0% |
! | ACATTGATATGATTAGATGA+TGG | - | chr2.4:17057601-17057620 | MS.gene88390:CDS | 25.0% |
! | TTATTCTGATTCTGATTGTT+AGG | + | chr2.4:17057361-17057380 | None:intergenic | 25.0% |
!! | AGTGTTATTGTTATTGTTGT+TGG | + | chr2.4:17057269-17057288 | None:intergenic | 25.0% |
!! | CAATAACAATAACACTGTTT+TGG | - | chr2.4:17057273-17057292 | MS.gene88390:intron | 25.0% |
AAAAAATCCACAAAAGGTAG+AGG | + | chr2.4:17058050-17058069 | None:intergenic | 30.0% | |
ATCAGAATCAGAATAACAAC+AGG | - | chr2.4:17057365-17057384 | MS.gene88390:intron | 30.0% | |
GAAAACCAAGCAAAAAACAA+AGG | - | chr2.4:17057010-17057029 | MS.gene88390:CDS | 30.0% | |
TCAGAATCAGAATAACAACA+GGG | - | chr2.4:17057366-17057385 | MS.gene88390:intron | 30.0% | |
! | CATCATGTTCATGATTTTCT+TGG | - | chr2.4:17058275-17058294 | MS.gene88390:intron | 30.0% |
! | TCATGAACATGATGATGATT+AGG | + | chr2.4:17058269-17058288 | None:intergenic | 30.0% |
! | TTTTTGTGTTGTAAAGTGTG+TGG | - | chr2.4:17058703-17058722 | MS.gene88390:CDS | 30.0% |
!!! | AACAATAACACTGTTTTGGT+TGG | - | chr2.4:17057277-17057296 | MS.gene88390:intron | 30.0% |
AACCTGAAATTTCCCACAAT+TGG | - | chr2.4:17058836-17058855 | MS.gene88390:CDS | 35.0% | |
ATTGAAGAGAGCTCTTTAGA+AGG | + | chr2.4:17057460-17057479 | None:intergenic | 35.0% | |
TCAGAAAACACGTTTGAATG+AGG | - | chr2.4:17058199-17058218 | MS.gene88390:intron | 35.0% | |
TGATGTTGAGGAAACTGAAA+TGG | + | chr2.4:17057217-17057236 | None:intergenic | 35.0% | |
! | AAAAAACCACTAAGAGGTGT+AGG | - | chr2.4:17057055-17057074 | MS.gene88390:CDS | 35.0% |
! | CATGTTCATGATTTTCTTGG+AGG | - | chr2.4:17058278-17058297 | MS.gene88390:intron | 35.0% |
! | TAATGTTCCTCTACCTTTTG+TGG | - | chr2.4:17058040-17058059 | MS.gene88390:intron | 35.0% |
! | TCTGGTTATGTTCCTTTTGT+TGG | - | chr2.4:17057301-17057320 | MS.gene88390:intron | 35.0% |
! | TGTTGTTGTTGTTGTTGATG+AGG | + | chr2.4:17057160-17057179 | None:intergenic | 35.0% |
!! | ATTTGCTGTTGATGATGTTG+AGG | + | chr2.4:17057229-17057248 | None:intergenic | 35.0% |
!!! | ACACCTCTTAGTGGTTTTTT+TGG | + | chr2.4:17057055-17057074 | None:intergenic | 35.0% |
!!! | CAACAACAGCTTTTGAAGTA+TGG | - | chr2.4:17057172-17057191 | MS.gene88390:CDS | 35.0% |
!!! | GTTTTTTGCTTGGTTTTCAG+AGG | + | chr2.4:17057008-17057027 | None:intergenic | 35.0% |
!!! | TTCTCCCTTTGTTTTTTGCT+TGG | + | chr2.4:17057018-17057037 | None:intergenic | 35.0% |
AACTCAGCACAATCTTGATG+AGG | - | chr2.4:17058343-17058362 | MS.gene88390:intron | 40.0% | |
AATAACAACAGGGTCGTTGT+TGG | - | chr2.4:17057376-17057395 | MS.gene88390:intron | 40.0% | |
ACCTTGAGGCAAAGATCAAA+AGG | + | chr2.4:17057505-17057524 | None:intergenic | 40.0% | |
CACCAATTGTGGGAAATTTC+AGG | + | chr2.4:17058841-17058860 | None:intergenic | 40.0% | |
GAGGAGAGTAATGTAATGAG+AGG | - | chr2.4:17058218-17058237 | MS.gene88390:intron | 40.0% | |
GCACCAAAAAAACCACTAAG+AGG | - | chr2.4:17057049-17057068 | MS.gene88390:CDS | 40.0% | |
GGATAAGCAGAAAGAACAGA+AGG | + | chr2.4:17058323-17058342 | None:intergenic | 40.0% | |
GGTAACTATGGATATGGATC+TGG | - | chr2.4:17057403-17057422 | MS.gene88390:intron | 40.0% | |
GGTTGAGAGTGATGAAGATT+TGG | + | chr2.4:17057484-17057503 | None:intergenic | 40.0% | |
TCATCAAGATTGTGCTGAGT+TGG | + | chr2.4:17058344-17058363 | None:intergenic | 40.0% | |
TCTCTCACTGTTTCAGCTTA+TGG | - | chr2.4:17058881-17058900 | MS.gene88390:CDS | 40.0% | |
TTGAACAGTTAGAGAAGCAG+AGG | - | chr2.4:17057080-17057099 | MS.gene88390:CDS | 40.0% | |
TTGTGTTGTAAAGTGTGTGG+AGG | - | chr2.4:17058706-17058725 | MS.gene88390:CDS | 40.0% | |
TTTGAGCAAGCTCCAACAAA+AGG | + | chr2.4:17057316-17057335 | None:intergenic | 40.0% | |
! | ACCTTTTGATCTTTGCCTCA+AGG | - | chr2.4:17057501-17057520 | MS.gene88390:intron | 40.0% |
! | AGCTCTTTAGAAGGCTCAAA+AGG | + | chr2.4:17057451-17057470 | None:intergenic | 40.0% |
! | AGGGAAGGACAAAGTTTTCA+TGG | - | chr2.4:17058766-17058785 | MS.gene88390:CDS | 40.0% |
! | ATGGTGCATTTTCACCAACT+GGG | - | chr2.4:17057191-17057210 | MS.gene88390:CDS | 40.0% |
! | GCTCTTTAGAAGGCTCAAAA+GGG | + | chr2.4:17057450-17057469 | None:intergenic | 40.0% |
! | GTTGTTGATGAGGATGATCA+AGG | + | chr2.4:17057150-17057169 | None:intergenic | 40.0% |
! | TATGGTGCATTTTCACCAAC+TGG | - | chr2.4:17057190-17057209 | MS.gene88390:CDS | 40.0% |
!! | TGTGGGAAATTTCAGGTTCT+TGG | + | chr2.4:17058834-17058853 | None:intergenic | 40.0% |
!!! | AACACTGTTTTGGTTGGTTC+TGG | - | chr2.4:17057283-17057302 | MS.gene88390:intron | 40.0% |
AAGTTCTTCATCAGGAGGGA+AGG | - | chr2.4:17058751-17058770 | MS.gene88390:CDS | 45.0% | |
AGAACAGAAGGTTGAGGTTG+AGG | + | chr2.4:17058311-17058330 | None:intergenic | 45.0% | |
AGAAGCAGCTTCACCAATTG+TGG | + | chr2.4:17058852-17058871 | None:intergenic | 45.0% | |
CTCACTGTTTCAGCTTATGG+AGG | - | chr2.4:17058884-17058903 | MS.gene88390:CDS | 45.0% | |
GAAGCAGCTTCACCAATTGT+GGG | + | chr2.4:17058851-17058870 | None:intergenic | 45.0% | |
GCAGAAAGAACAGAAGGTTG+AGG | + | chr2.4:17058317-17058336 | None:intergenic | 45.0% | |
GTTAGAGAAGCAGAGGATAG+AGG | - | chr2.4:17057087-17057106 | MS.gene88390:CDS | 45.0% | |
TCAACTCCTACACCTCTTAG+TGG | + | chr2.4:17057064-17057083 | None:intergenic | 45.0% | |
TTGGTGAGAAAAGCTGAAGC+TGG | - | chr2.4:17057112-17057131 | MS.gene88390:CDS | 45.0% | |
! | GGTGGTGGTAACTATGGATA+TGG | - | chr2.4:17057397-17057416 | MS.gene88390:intron | 45.0% |
!! | GTTGTTGGTGGTGGTAACTA+TGG | - | chr2.4:17057391-17057410 | MS.gene88390:intron | 45.0% |
!! | TTAAATTAAATAATTAGATA+TGG | + | chr2.4:17058511-17058530 | None:intergenic | 5.0% |
AACAACAGGGTCGTTGTTGG+TGG | - | chr2.4:17057379-17057398 | MS.gene88390:intron | 50.0% | |
AGGAGCTAGAAACCCTTTGG+AGG | - | chr2.4:17058238-17058257 | MS.gene88390:intron | 50.0% | |
AGGAGGGGAAGTTCTTCATC+AGG | - | chr2.4:17058743-17058762 | MS.gene88390:CDS | 50.0% | |
AGGGGAAGTTCTTCATCAGG+AGG | - | chr2.4:17058746-17058765 | MS.gene88390:CDS | 50.0% | |
AGGTTGTTGCTGTGCATAGG+AGG | - | chr2.4:17058726-17058745 | MS.gene88390:CDS | 50.0% | |
GAGAGGAGCTAGAAACCCTT+TGG | - | chr2.4:17058235-17058254 | MS.gene88390:intron | 50.0% | |
GATTAGGCCATGCCTCCAAA+GGG | + | chr2.4:17058253-17058272 | None:intergenic | 50.0% | |
GGAAACTGAAATGGCCCAGT+TGG | + | chr2.4:17057208-17057227 | None:intergenic | 50.0% | |
GGGGAAGTTCTTCATCAGGA+GGG | - | chr2.4:17058747-17058766 | MS.gene88390:CDS | 50.0% | |
GGTTGTTGCTGTGCATAGGA+GGG | - | chr2.4:17058727-17058746 | MS.gene88390:CDS | 50.0% | |
GTTGTTGCTGTGCATAGGAG+GGG | - | chr2.4:17058728-17058747 | MS.gene88390:CDS | 50.0% | |
TGATTAGGCCATGCCTCCAA+AGG | + | chr2.4:17058254-17058273 | None:intergenic | 50.0% | |
TGGAGGTTGTTGCTGTGCAT+AGG | - | chr2.4:17058723-17058742 | MS.gene88390:CDS | 50.0% | |
! | CTAGAAACCCTTTGGAGGCA+TGG | - | chr2.4:17058243-17058262 | MS.gene88390:intron | 50.0% |
! | GAAGCAGAGGATAGAGGCAT+TGG | - | chr2.4:17057093-17057112 | MS.gene88390:CDS | 50.0% |
! | GTTGGAGCTTGCTCAAACGT+TGG | - | chr2.4:17057319-17057338 | MS.gene88390:intron | 50.0% |
!! | TGCTTGGTTTTCAGAGGCAG+AGG | + | chr2.4:17057002-17057021 | None:intergenic | 50.0% |
GCTTGCTCAAACGTTGGTGC+TGG | - | chr2.4:17057325-17057344 | MS.gene88390:intron | 55.0% | |
! | AACAGGGTCGTTGTTGGTGG+TGG | - | chr2.4:17057382-17057401 | MS.gene88390:intron | 55.0% |
!! | GCTCAAACGTTGGTGCTGGA+TGG | - | chr2.4:17057329-17057348 | MS.gene88390:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 17056995 | 17058958 | 17056995 | ID=MS.gene88390 |
chr2.4 | mRNA | 17056995 | 17058958 | 17056995 | ID=MS.gene88390.t1;Parent=MS.gene88390 |
chr2.4 | exon | 17058431 | 17058958 | 17058431 | ID=MS.gene88390.t1.exon1;Parent=MS.gene88390.t1 |
chr2.4 | CDS | 17058431 | 17058958 | 17058431 | ID=cds.MS.gene88390.t1;Parent=MS.gene88390.t1 |
chr2.4 | exon | 17057589 | 17057750 | 17057589 | ID=MS.gene88390.t1.exon2;Parent=MS.gene88390.t1 |
chr2.4 | CDS | 17057589 | 17057750 | 17057589 | ID=cds.MS.gene88390.t1;Parent=MS.gene88390.t1 |
chr2.4 | exon | 17056995 | 17057234 | 17056995 | ID=MS.gene88390.t1.exon3;Parent=MS.gene88390.t1 |
chr2.4 | CDS | 17056995 | 17057234 | 17056995 | ID=cds.MS.gene88390.t1;Parent=MS.gene88390.t1 |
Gene Sequence |
Protein sequence |