Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88490.t1 | KEH21821.1 | 88.1 | 285 | 31 | 1 | 92 | 373 | 46 | 330 | 1.00E-134 | 490 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88490.t1 | B8BLZ4 | 70.8 | 96 | 23 | 2 | 1 | 95 | 3 | 94 | 2.0e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88490.t1 | A0A072TXC0 | 88.1 | 285 | 31 | 1 | 92 | 373 | 46 | 330 | 7.2e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88490.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88490.t1 | MTR_7g018620 | 88.772 | 285 | 29 | 1 | 92 | 373 | 46 | 330 | 1.24e-155 | 441 |
| MS.gene88490.t1 | MTR_6g052002 | 88.265 | 196 | 20 | 1 | 107 | 299 | 1 | 196 | 1.36e-105 | 314 |
| MS.gene88490.t1 | MTR_8g038620 | 95.745 | 94 | 4 | 0 | 1 | 94 | 3 | 96 | 6.41e-58 | 186 |
| MS.gene88490.t1 | MTR_2g048385 | 40.672 | 268 | 109 | 5 | 107 | 368 | 1 | 224 | 6.28e-48 | 162 |
| MS.gene88490.t1 | MTR_6g007460 | 79.787 | 94 | 11 | 1 | 1 | 94 | 5 | 90 | 1.09e-43 | 150 |
| MS.gene88490.t1 | MTR_3g015490 | 78.261 | 92 | 17 | 2 | 6 | 95 | 3 | 93 | 2.39e-41 | 143 |
| MS.gene88490.t1 | MTR_7g490310 | 72.917 | 96 | 25 | 1 | 1 | 95 | 3 | 98 | 8.89e-40 | 141 |
| MS.gene88490.t1 | MTR_7g451160 | 46.897 | 145 | 74 | 3 | 113 | 255 | 8 | 151 | 4.04e-33 | 124 |
| MS.gene88490.t1 | MTR_3g088630 | 53.922 | 102 | 37 | 1 | 4 | 95 | 19 | 120 | 2.45e-27 | 108 |
| MS.gene88490.t1 | MTR_6g021620 | 47.826 | 92 | 48 | 0 | 107 | 198 | 1 | 92 | 1.62e-25 | 99.8 |
| MS.gene88490.t1 | MTR_3g093860 | 57.778 | 90 | 29 | 2 | 8 | 95 | 19 | 101 | 6.98e-24 | 96.7 |
| MS.gene88490.t1 | MTR_1g049100 | 58.889 | 90 | 31 | 2 | 6 | 95 | 7 | 90 | 1.33e-23 | 97.4 |
| MS.gene88490.t1 | MTR_5g036480 | 54.444 | 90 | 37 | 1 | 6 | 95 | 15 | 100 | 1.62e-23 | 98.2 |
| MS.gene88490.t1 | MTR_4g106590 | 53.465 | 101 | 37 | 2 | 2 | 101 | 21 | 112 | 2.67e-23 | 97.1 |
| MS.gene88490.t1 | MTR_3g078613 | 52.475 | 101 | 38 | 2 | 2 | 101 | 18 | 109 | 7.54e-23 | 95.1 |
| MS.gene88490.t1 | MTR_3g078613 | 54.737 | 95 | 33 | 2 | 2 | 95 | 18 | 103 | 1.07e-22 | 94.7 |
| MS.gene88490.t1 | MTR_1g036850 | 44.944 | 89 | 45 | 2 | 104 | 191 | 1 | 86 | 5.62e-17 | 77.0 |
| MS.gene88490.t1 | MTR_8g064380 | 45.614 | 57 | 31 | 0 | 107 | 163 | 1 | 57 | 3.31e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88490.t1 | AT2G41310 | 62.105 | 95 | 36 | 0 | 1 | 95 | 3 | 97 | 7.76e-33 | 122 |
| MS.gene88490.t1 | AT3G57040 | 64.000 | 100 | 28 | 2 | 1 | 95 | 3 | 99 | 4.05e-32 | 121 |
| MS.gene88490.t1 | AT3G57040 | 64.000 | 100 | 28 | 2 | 1 | 95 | 3 | 99 | 4.05e-32 | 121 |
| MS.gene88490.t1 | AT1G19050 | 55.556 | 90 | 32 | 1 | 6 | 95 | 23 | 104 | 2.07e-24 | 99.8 |
| MS.gene88490.t1 | AT1G59940 | 57.143 | 91 | 31 | 2 | 5 | 95 | 31 | 113 | 3.17e-24 | 99.8 |
| MS.gene88490.t1 | AT3G48100 | 54.167 | 96 | 35 | 2 | 1 | 95 | 19 | 106 | 3.33e-24 | 98.6 |
| MS.gene88490.t1 | AT3G56380 | 49.000 | 100 | 44 | 1 | 2 | 101 | 15 | 107 | 5.65e-24 | 97.1 |
| MS.gene88490.t1 | AT1G74890 | 55.556 | 90 | 32 | 1 | 6 | 95 | 17 | 98 | 6.61e-24 | 98.2 |
| MS.gene88490.t1 | AT3G56380 | 50.526 | 95 | 40 | 1 | 2 | 96 | 15 | 102 | 7.11e-24 | 96.7 |
| MS.gene88490.t1 | AT5G62920 | 58.427 | 89 | 29 | 1 | 7 | 95 | 25 | 105 | 1.29e-23 | 97.1 |
| MS.gene88490.t1 | AT1G10470 | 56.522 | 92 | 32 | 1 | 5 | 96 | 18 | 101 | 1.81e-23 | 98.2 |
| MS.gene88490.t1 | AT1G10470 | 56.522 | 92 | 32 | 1 | 5 | 96 | 32 | 115 | 1.86e-23 | 98.6 |
| MS.gene88490.t1 | AT1G59940 | 57.143 | 91 | 31 | 2 | 5 | 95 | 123 | 205 | 2.71e-23 | 99.4 |
| MS.gene88490.t1 | AT2G40670 | 51.613 | 93 | 40 | 2 | 4 | 96 | 26 | 113 | 9.60e-23 | 94.0 |
| MS.gene88490.t1 | AT2G40670 | 48.980 | 98 | 45 | 2 | 4 | 101 | 26 | 118 | 1.18e-22 | 94.0 |
Find 89 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGCAGCGGTGACGCTTAT+TGG | 0.254943 | 8.3:-58149987 | MS.gene88490:CDS |
| ACAGATCTGTGCAAATTTCT+TGG | 0.257459 | 8.3:-58149559 | MS.gene88490:CDS |
| ATGCATCAGACACTCTCTTT+TGG | 0.295723 | 8.3:+58149314 | None:intergenic |
| AGTAAGGCCTTGAAATTTCT+TGG | 0.299900 | 8.3:-58151692 | MS.gene88490:CDS |
| AAATTTGCACAGATCTGTTT+TGG | 0.305133 | 8.3:+58149564 | None:intergenic |
| AGAGAATCAGTTCCATGTTT+TGG | 0.307421 | 8.3:-58151956 | MS.gene88490:CDS |
| ACATCTGGATCTGGCGGCTT+TGG | 0.309085 | 8.3:+58149412 | None:intergenic |
| GATCAGTTTCTTCTGATTGA+AGG | 0.342502 | 8.3:+58149701 | None:intergenic |
| CGTTTCACGTTGCATTCATT+TGG | 0.351721 | 8.3:-58149819 | MS.gene88490:CDS |
| AGGGAAAGAAATTCACAGTA+TGG | 0.355972 | 8.3:-58150034 | MS.gene88490:CDS |
| GGTAGAGAATGCAGAAGAAA+TGG | 0.358376 | 8.3:-58149638 | MS.gene88490:CDS |
| GGATGGGTTTCACTCGAGTT+TGG | 0.378304 | 8.3:-58149454 | MS.gene88490:CDS |
| TCCTCTTCTTCATCCGATAT+AGG | 0.380785 | 8.3:+58149766 | None:intergenic |
| TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8.3:-58151633 | MS.gene88490:intron |
| TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8.3:+58151635 | None:intergenic |
| TTCCACAATGATGACATTCA+TGG | 0.394640 | 8.3:+58149600 | None:intergenic |
| TACAGTTGATTCCGCTAGTA+AGG | 0.395161 | 8.3:-58151708 | MS.gene88490:CDS |
| CTCTTCACCACAAACACATC+TGG | 0.400598 | 8.3:+58149397 | None:intergenic |
| GTCACTCTACTTCAAGTTAT+GGG | 0.422238 | 8.3:-58149260 | MS.gene88490:CDS |
| AAGCAAACCAAGAAATTTCA+AGG | 0.430996 | 8.3:+58151685 | None:intergenic |
| ATACTGTGAATTTCTTTCCC+TGG | 0.435655 | 8.3:+58150036 | None:intergenic |
| TAGAGACCTTCTACCTATAT+CGG | 0.437229 | 8.3:-58149779 | MS.gene88490:CDS |
| TGTCACTCTACTTCAAGTTA+TGG | 0.441433 | 8.3:-58149261 | MS.gene88490:CDS |
| TCGGATGAAGAAGAGGAATC+TGG | 0.442177 | 8.3:-58149760 | MS.gene88490:CDS |
| GGCGGCTTTGGCAACGGTGG+AGG | 0.444655 | 8.3:+58149424 | None:intergenic |
| ATCCTCTGGTTTGATCGAAC+TGG | 0.445222 | 8.3:-58149368 | MS.gene88490:CDS |
| TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 8.3:-58151490 | MS.gene88490:CDS |
| TCAGACAGCAGAAGAGGAAA+AGG | 0.450710 | 8.3:-58149659 | MS.gene88490:CDS |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8.3:-58151499 | MS.gene88490:CDS |
| AGAGGAATCTGGATTGGAAT+GGG | 0.463955 | 8.3:-58149749 | MS.gene88490:CDS |
| GAAATTTCTTGGTTTGCTTG+AGG | 0.464582 | 8.3:-58151681 | MS.gene88490:CDS |
| CTTCATCCGATATAGGTAGA+AGG | 0.478985 | 8.3:+58149773 | None:intergenic |
| ACAGGAGGGTGAGAAGTTGC+TGG | 0.481360 | 8.3:-58149923 | MS.gene88490:CDS |
| TGAAGAAGAGGAATCTGGAT+TGG | 0.486518 | 8.3:-58149755 | MS.gene88490:CDS |
| ACCACAAACACATCTGGATC+TGG | 0.490838 | 8.3:+58149403 | None:intergenic |
| GGATCTGGCGGCTTTGGCAA+CGG | 0.492872 | 8.3:+58149418 | None:intergenic |
| TGCGAAACCGTGCTCTCGTA+TGG | 0.493588 | 8.3:-58149885 | MS.gene88490:CDS |
| TATCAGAGCAGTTCTGATCC+AGG | 0.503304 | 8.3:-58150054 | MS.gene88490:intron |
| TGGGTTTCACTCGAGTTTGG+CGG | 0.506254 | 8.3:-58149451 | MS.gene88490:CDS |
| CTCTCGTATGGTGGCAGTGG+TGG | 0.508076 | 8.3:-58149873 | MS.gene88490:CDS |
| AAGAGGAATCTGGATTGGAA+TGG | 0.512534 | 8.3:-58149750 | MS.gene88490:CDS |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8.3:-58151915 | MS.gene88490:CDS |
| GGGTGAGAAGTTGCTGGAGG+CGG | 0.521291 | 8.3:-58149917 | MS.gene88490:CDS |
| GGGAAAGAAATTCACAGTAT+GGG | 0.521801 | 8.3:-58150033 | MS.gene88490:CDS |
| GCTTTGGCAACGGTGGAGGT+AGG | 0.525470 | 8.3:+58149428 | None:intergenic |
| ATGGACATGCCACAATTTGA+CGG | 0.525488 | 8.3:-58150006 | MS.gene88490:CDS |
| CTCGCCAACTCGCATGTGGA+TGG | 0.534527 | 8.3:+58149842 | None:intergenic |
| AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 8.3:+58151481 | None:intergenic |
| GGAAAGAAATTCACAGTATG+GGG | 0.548356 | 8.3:-58150032 | MS.gene88490:CDS |
| GCCAGATCCAGATGTGTTTG+TGG | 0.548708 | 8.3:-58149404 | MS.gene88490:CDS |
| GTGAAGAGTGGATTATCCTC+TGG | 0.549909 | 8.3:-58149382 | MS.gene88490:CDS |
| CAATCAGAAGAAACTGATCA+AGG | 0.552737 | 8.3:-58149697 | MS.gene88490:CDS |
| TTATGTTATCCTTCACCTTG+AGG | 0.554382 | 8.3:-58149223 | None:intergenic |
| TCACCGCTGCCGTCAAATTG+TGG | 0.556244 | 8.3:+58149997 | None:intergenic |
| TCTGGCGGCTTTGGCAACGG+TGG | 0.557558 | 8.3:+58149421 | None:intergenic |
| TGAAGTAGAGTGACAGAGCA+AGG | 0.563368 | 8.3:+58149269 | None:intergenic |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8.3:-58151498 | MS.gene88490:CDS |
| TGAGTAGTGTGTTCGAATCG+AGG | 0.566493 | 8.3:-58149507 | MS.gene88490:CDS |
| TACGAGAGCACGGTTTCGCA+AGG | 0.568686 | 8.3:+58149888 | None:intergenic |
| ACCTATATCGGATGAAGAAG+AGG | 0.572370 | 8.3:-58149767 | MS.gene88490:CDS |
| GGTAGAAGGTCTCTATACTC+TGG | 0.575915 | 8.3:+58149787 | None:intergenic |
| CTCCATGAATGTCATCATTG+TGG | 0.577446 | 8.3:-58149602 | MS.gene88490:CDS |
| ACTCATTCAGACAGCAGAAG+AGG | 0.578209 | 8.3:-58149665 | MS.gene88490:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 8.3:+58151944 | None:intergenic |
| GTTTGCTTGAGGATGAAATG+AGG | 0.583679 | 8.3:-58151670 | MS.gene88490:CDS |
| TACTTCAAGTTATGGGACCC+TGG | 0.585642 | 8.3:-58149253 | MS.gene88490:CDS |
| TGATGTCGTGGGAACACAGG+AGG | 0.587063 | 8.3:-58149938 | MS.gene88490:CDS |
| GATGTGTTTGTGGTGAAGAG+TGG | 0.587223 | 8.3:-58149394 | MS.gene88490:CDS |
| GCAGCGGTGACGCTTATTGG+TGG | 0.588419 | 8.3:-58149984 | MS.gene88490:CDS |
| GTGCTCTCGTATGGTGGCAG+TGG | 0.594027 | 8.3:-58149876 | MS.gene88490:CDS |
| ATCAGAGCAGTTCTGATCCA+GGG | 0.597438 | 8.3:-58150053 | MS.gene88490:intron |
| GAGTAGTGTGTTCGAATCGA+GGG | 0.600652 | 8.3:-58149506 | MS.gene88490:CDS |
| GGATAACATAACTGTCCACC+AGG | 0.602898 | 8.3:+58149235 | None:intergenic |
| ATGCCACAATTTGACGGCAG+CGG | 0.607808 | 8.3:-58150000 | MS.gene88490:CDS |
| TCACCTTGTCCTCAAGGTGA+AGG | 0.608165 | 8.3:+58149214 | None:intergenic |
| GATGCCATCCACATGCGAGT+TGG | 0.613742 | 8.3:-58149846 | MS.gene88490:CDS |
| AACGCTCGCCAACTCGCATG+TGG | 0.614660 | 8.3:+58149838 | None:intergenic |
| GATGTCGTGGGAACACAGGA+GGG | 0.632420 | 8.3:-58149937 | MS.gene88490:CDS |
| AAATTTCAAGGCCTTACTAG+CGG | 0.637282 | 8.3:+58151697 | None:intergenic |
| GAAACCGTGCTCTCGTATGG+TGG | 0.641075 | 8.3:-58149882 | MS.gene88490:CDS |
| CACAATGATGACATTCATGG+AGG | 0.661506 | 8.3:+58149603 | None:intergenic |
| ACTGCCACCATACGAGAGCA+CGG | 0.670073 | 8.3:+58149878 | None:intergenic |
| TTCAAGTTATGGGACCCTGG+TGG | 0.675989 | 8.3:-58149250 | MS.gene88490:CDS |
| TGCCAGTTCGATCAAACCAG+AGG | 0.680110 | 8.3:+58149366 | None:intergenic |
| GGAGGGTGAGAAGTTGCTGG+AGG | 0.682888 | 8.3:-58149920 | MS.gene88490:CDS |
| ACAAACACATCTGGATCTGG+CGG | 0.689367 | 8.3:+58149406 | None:intergenic |
| GATTGAAGGCTGAATGTGTG+AGG | 0.689518 | 8.3:+58149715 | None:intergenic |
| GAAAGAAATTCACAGTATGG+GGG | 0.689869 | 8.3:-58150031 | MS.gene88490:CDS |
| GATAACATAACTGTCCACCA+GGG | 0.763454 | 8.3:+58149236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAGCAAATTAATGA+AGG | - | chr8.3:58150343-58150362 | MS.gene88490:intron | 15.0% |
| !! | TACTGAATTGATAAATATTA+TGG | - | chr8.3:58149589-58149608 | MS.gene88490:CDS | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | - | chr8.3:58149892-58149911 | MS.gene88490:CDS | 15.0% |
| !!! | TGTATAGTCTATTATTTTTT+TGG | - | chr8.3:58149400-58149419 | MS.gene88490:CDS | 15.0% |
| !! | AAATTGCCTAGAAAAATTAT+CGG | - | chr8.3:58151708-58151727 | MS.gene88490:CDS | 20.0% |
| !! | ATTTATTGTAAGATTCAGTT+GGG | + | chr8.3:58150768-58150787 | None:intergenic | 20.0% |
| !! | CTATTAGTATTGTTAGTAAT+AGG | - | chr8.3:58150811-58150830 | MS.gene88490:intron | 20.0% |
| !! | TAGGAAACAATTTAGAAAAT+AGG | - | chr8.3:58149911-58149930 | MS.gene88490:CDS | 20.0% |
| !! | TATTTATTGTAAGATTCAGT+TGG | + | chr8.3:58150769-58150788 | None:intergenic | 20.0% |
| !! | TTTGATTCAATTATTCATGT+AGG | - | chr8.3:58149647-58149666 | MS.gene88490:CDS | 20.0% |
| !!! | TGCATAATTATATTGATAGT+TGG | - | chr8.3:58150023-58150042 | MS.gene88490:CDS | 20.0% |
| !!! | TTCAATTCAAAAAGGAATTT+TGG | - | chr8.3:58150238-58150257 | MS.gene88490:intron | 20.0% |
| ! | GTATTATAAATAAGATGCAG+AGG | - | chr8.3:58150505-58150524 | MS.gene88490:intron | 25.0% |
| ! | TAGACTAATCAAATAACTAG+TGG | + | chr8.3:58149796-58149815 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8.3:58149556-58149575 | MS.gene88490:CDS | 25.0% |
| ! | TGTATTCCGAAAATACATTT+CGG | - | chr8.3:58150139-58150158 | MS.gene88490:intron | 25.0% |
| ! | TTAAGCAAATTAATGAAGGT+GGG | - | chr8.3:58150347-58150366 | MS.gene88490:intron | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8.3:58149865-58149884 | MS.gene88490:CDS | 25.0% |
| ! | TTTAAGCAAATTAATGAAGG+TGG | - | chr8.3:58150346-58150365 | MS.gene88490:intron | 25.0% |
| !! | ACCTATTATCTTTGTCTTTT+TGG | + | chr8.3:58150079-58150098 | None:intergenic | 25.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8.3:58149302-58149321 | None:intergenic | 25.0% |
| !! | CCTATTATCTTTGTCTTTTT+GGG | + | chr8.3:58150078-58150097 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8.3:58149300-58149319 | MS.gene88490:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8.3:58149557-58149576 | None:intergenic | 25.0% |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8.3:58149507-58149526 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8.3:58149690-58149709 | MS.gene88490:CDS | 30.0% | |
| ATACTATCATATGAGATCCA+TGG | + | chr8.3:58150200-58150219 | None:intergenic | 30.0% | |
| ATCAACAAAATTCATGCAAG+TGG | - | chr8.3:58150262-58150281 | MS.gene88490:intron | 30.0% | |
| CAAAAGTCAGGAAAAAATTG+TGG | + | chr8.3:58149841-58149860 | None:intergenic | 30.0% | |
| CCCAAAAAGACAAAGATAAT+AGG | - | chr8.3:58150075-58150094 | MS.gene88490:intron | 30.0% | |
| GCATTCAAATTTCAAAAGTC+AGG | + | chr8.3:58149853-58149872 | None:intergenic | 30.0% | |
| GTGCATGATTCAATTCAAAA+AGG | - | chr8.3:58150230-58150249 | MS.gene88490:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8.3:58149691-58149710 | MS.gene88490:CDS | 30.0% | |
| TCAACAAAATTCATGCAAGT+GGG | - | chr8.3:58150263-58150282 | MS.gene88490:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8.3:58149725-58149744 | MS.gene88490:CDS | 30.0% | |
| TTGATATCAGTTACTATCAC+TGG | - | chr8.3:58151112-58151131 | MS.gene88490:intron | 30.0% | |
| TTGATATCAGTTTCTATCAC+TGG | - | chr8.3:58150661-58150680 | MS.gene88490:intron | 30.0% | |
| ! | AAATTTGCACAGATCTGTTT+TGG | + | chr8.3:58151628-58151647 | None:intergenic | 30.0% |
| ! | GGATAACCGAAATGTATTTT+CGG | + | chr8.3:58150148-58150167 | None:intergenic | 30.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8.3:58149274-58149293 | MS.gene88490:CDS | 30.0% |
| AAAAATTATCGGAGAGGGAT+GGG | - | chr8.3:58151719-58151738 | MS.gene88490:intron | 35.0% | |
| AAATTTCAAGGCCTTACTAG+CGG | + | chr8.3:58149495-58149514 | None:intergenic | 35.0% | |
| ACAGATCTGTGCAAATTTCT+TGG | - | chr8.3:58151630-58151649 | MS.gene88490:intron | 35.0% | |
| AGGGAAAGAAATTCACAGTA+TGG | - | chr8.3:58150704-58150723 | MS.gene88490:intron | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8.3:58149497-58149516 | MS.gene88490:CDS | 35.0% | |
| ATACTGTGAATTTCTTTCCC+TGG | + | chr8.3:58150705-58150724 | None:intergenic | 35.0% | |
| ATTGGGATAAAGGATAGGTA+GGG | - | chr8.3:58150547-58150566 | MS.gene88490:intron | 35.0% | |
| ATTGTAAGATTCAGTTGGGA+AGG | + | chr8.3:58150764-58150783 | None:intergenic | 35.0% | |
| CAATCAGAAGAAACTGATCA+AGG | - | chr8.3:58151492-58151511 | MS.gene88490:CDS | 35.0% | |
| CCTAGAAAAATTATCGGAGA+GGG | - | chr8.3:58151714-58151733 | MS.gene88490:CDS | 35.0% | |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8.3:58149729-58149748 | MS.gene88490:CDS | 35.0% | |
| GAAAGAAATTCACAGTATGG+GGG | - | chr8.3:58150707-58150726 | MS.gene88490:intron | 35.0% | |
| GACTTCTATGTAACAGCTAT+AGG | - | chr8.3:58150477-58150496 | MS.gene88490:intron | 35.0% | |
| GATCAGTTTCTTCTGATTGA+AGG | + | chr8.3:58151491-58151510 | None:intergenic | 35.0% | |
| GCAGAAGTTATAGATACTAG+TGG | - | chr8.3:58150393-58150412 | MS.gene88490:intron | 35.0% | |
| GGAAAGAAATTCACAGTATG+GGG | - | chr8.3:58150706-58150725 | MS.gene88490:intron | 35.0% | |
| GGGAAAGAAATTCACAGTAT+GGG | - | chr8.3:58150705-58150724 | MS.gene88490:intron | 35.0% | |
| GTTAGTAATAGGACTCCTAA+GGG | - | chr8.3:58150371-58150390 | MS.gene88490:intron | 35.0% | |
| TAAGATGCAGAGGAAAAGAA+AGG | - | chr8.3:58150515-58150534 | MS.gene88490:intron | 35.0% | |
| TAGAGACCTTCTACCTATAT+CGG | - | chr8.3:58151410-58151429 | MS.gene88490:intron | 35.0% | |
| TATCATCAACAGCCAAAACA+TGG | + | chr8.3:58149248-58149267 | None:intergenic | 35.0% | |
| TATCTATAACTTCTGCCCTT+AGG | + | chr8.3:58150389-58150408 | None:intergenic | 35.0% | |
| TGTTAGTAATAGGACTCCTA+AGG | - | chr8.3:58150370-58150389 | MS.gene88490:intron | 35.0% | |
| TTCCACAATGATGACATTCA+TGG | + | chr8.3:58151592-58151611 | None:intergenic | 35.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | - | chr8.3:58149233-58149252 | MS.gene88490:CDS | 35.0% |
| ! | GACAGACTCTTTTATGAACA+TGG | - | chr8.3:58151657-58151676 | MS.gene88490:CDS | 35.0% |
| ! | GTCACTCTACTTCAAGTTAT+GGG | - | chr8.3:58151929-58151948 | MS.gene88490:CDS | 35.0% |
| ! | TGTCACTCTACTTCAAGTTA+TGG | - | chr8.3:58151928-58151947 | MS.gene88490:CDS | 35.0% |
| !! | AAAGAAAGGCATTCAAGGAT+TGG | - | chr8.3:58150980-58150999 | MS.gene88490:intron | 35.0% |
| !! | AAGAAAGGCATTCAAGGATT+GGG | - | chr8.3:58150981-58151000 | MS.gene88490:intron | 35.0% |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8.3:58149508-58149527 | MS.gene88490:CDS | 35.0% |
| !! | GAGAAACATTTTGATGTCGT+GGG | - | chr8.3:58151240-58151259 | MS.gene88490:intron | 35.0% |
| !! | TGAGAAACATTTTGATGTCG+TGG | - | chr8.3:58151239-58151258 | MS.gene88490:intron | 35.0% |
| AATTCACAGTATGGGGGAAA+TGG | - | chr8.3:58151164-58151183 | MS.gene88490:intron | 40.0% | |
| ACCAAGACTCTCGAATTTCT+TGG | - | chr8.3:58150605-58150624 | MS.gene88490:intron | 40.0% | |
| ACCTATATCGGATGAAGAAG+AGG | - | chr8.3:58151422-58151441 | MS.gene88490:intron | 40.0% | |
| ATGGACATGCCACAATTTGA+CGG | - | chr8.3:58151183-58151202 | MS.gene88490:intron | 40.0% | |
| CAACAGACGACAATATGTGT+TGG | + | chr8.3:58150049-58150068 | None:intergenic | 40.0% | |
| CAAGGATTGGGATAAAGGAT+AGG | - | chr8.3:58150993-58151012 | MS.gene88490:intron | 40.0% | |
| CACAATGATGACATTCATGG+AGG | + | chr8.3:58151589-58151608 | None:intergenic | 40.0% | |
| CCAAGACTCTCGAATTTCTT+GGG | - | chr8.3:58150606-58150625 | MS.gene88490:intron | 40.0% | |
| CGTTTCACGTTGCATTCATT+TGG | - | chr8.3:58151370-58151389 | MS.gene88490:intron | 40.0% | |
| CTCCATGAATGTCATCATTG+TGG | - | chr8.3:58151587-58151606 | MS.gene88490:intron | 40.0% | |
| CTTCATCCGATATAGGTAGA+AGG | + | chr8.3:58151419-58151438 | None:intergenic | 40.0% | |
| GAAAAATTATCGGAGAGGGA+TGG | - | chr8.3:58151718-58151737 | MS.gene88490:intron | 40.0% | |
| GATAACATAACTGTCCACCA+GGG | + | chr8.3:58151956-58151975 | None:intergenic | 40.0% | |
| GATTGGGATAAAGGATAGGT+AGG | - | chr8.3:58150546-58150565 | MS.gene88490:intron | 40.0% | |
| GCATTCAAGGATTGGGATAA+AGG | - | chr8.3:58150988-58151007 | MS.gene88490:intron | 40.0% | |
| GCCTAGAAAAATTATCGGAG+AGG | - | chr8.3:58151713-58151732 | MS.gene88490:CDS | 40.0% | |
| GGTAGAGAATGCAGAAGAAA+TGG | - | chr8.3:58151551-58151570 | MS.gene88490:intron | 40.0% | |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8.3:58149519-58149538 | MS.gene88490:CDS | 40.0% | |
| TCCTCTTCTTCATCCGATAT+AGG | + | chr8.3:58151426-58151445 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAATCTGGAT+TGG | - | chr8.3:58151434-58151453 | MS.gene88490:intron | 40.0% | |
| TGAAGGTGGGTGTTAGTAAT+AGG | - | chr8.3:58150360-58150379 | MS.gene88490:intron | 40.0% | |
| ! | AAGAGGAATCTGGATTGGAA+TGG | - | chr8.3:58151439-58151458 | MS.gene88490:intron | 40.0% |
| ! | AGAGGAATCTGGATTGGAAT+GGG | - | chr8.3:58151440-58151459 | MS.gene88490:intron | 40.0% |
| ! | ATGCATCAGACACTCTCTTT+TGG | + | chr8.3:58151878-58151897 | None:intergenic | 40.0% |
| ! | CCCTCTCCGATAATTTTTCT+AGG | + | chr8.3:58151717-58151736 | None:intergenic | 40.0% |
| ! | TACAGTTGATTCCGCTAGTA+AGG | - | chr8.3:58149481-58149500 | MS.gene88490:CDS | 40.0% |
| ! | TGCATCAGACACTCTCTTTT+GGG | + | chr8.3:58151877-58151896 | None:intergenic | 40.0% |
| !! | AAAGAAAGGCATTCAGGGAT+TGG | - | chr8.3:58150529-58150548 | MS.gene88490:intron | 40.0% |
| !! | AAGAAAGGCATTCAGGGATT+GGG | - | chr8.3:58150530-58150549 | MS.gene88490:intron | 40.0% |
| !! | AGAGGAAAAGAAAGGCATTC+AGG | - | chr8.3:58150523-58150542 | MS.gene88490:intron | 40.0% |
| !! | CTCTTTTGGGGAGGAATTTT+CGG | + | chr8.3:58151864-58151883 | None:intergenic | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+AGG | - | chr8.3:58150524-58150543 | MS.gene88490:intron | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+GGG | - | chr8.3:58150524-58150543 | MS.gene88490:intron | 40.0% |
| AAGCTCTCGAATTCTTGGAG+GGG | - | chr8.3:58150577-58150596 | MS.gene88490:intron | 45.0% | |
| ACAAACACATCTGGATCTGG+CGG | + | chr8.3:58151786-58151805 | None:intergenic | 45.0% | |
| ACCACAAACACATCTGGATC+TGG | + | chr8.3:58151789-58151808 | None:intergenic | 45.0% | |
| ACTCATTCAGACAGCAGAAG+AGG | - | chr8.3:58151524-58151543 | MS.gene88490:intron | 45.0% | |
| AGACCAAGCTCTCGAATTCT+TGG | - | chr8.3:58150572-58150591 | MS.gene88490:intron | 45.0% | |
| AGCTTGAGAAGAGAGTAGAG+TGG | + | chr8.3:58150113-58150132 | None:intergenic | 45.0% | |
| CAAGCTCTCGAATTCTTGGA+GGG | - | chr8.3:58150576-58150595 | MS.gene88490:intron | 45.0% | |
| CAGGGATTGGGATAAAGGAT+AGG | - | chr8.3:58150542-58150561 | MS.gene88490:intron | 45.0% | |
| CCCAAGAAATTCGAGAGTCT+TGG | + | chr8.3:58150609-58150628 | None:intergenic | 45.0% | |
| CTCTTCACCACAAACACATC+TGG | + | chr8.3:58151795-58151814 | None:intergenic | 45.0% | |
| GAGTAGTGTGTTCGAATCGA+GGG | - | chr8.3:58151683-58151702 | MS.gene88490:CDS | 45.0% | |
| GATGTGTTTGTGGTGAAGAG+TGG | - | chr8.3:58151795-58151814 | MS.gene88490:intron | 45.0% | |
| GATTGAAGGCTGAATGTGTG+AGG | + | chr8.3:58151477-58151496 | None:intergenic | 45.0% | |
| GCATTCAGGGATTGGGATAA+AGG | - | chr8.3:58150537-58150556 | MS.gene88490:intron | 45.0% | |
| GCTTGAGAAGAGAGTAGAGT+GGG | + | chr8.3:58150112-58150131 | None:intergenic | 45.0% | |
| GGATAACATAACTGTCCACC+AGG | + | chr8.3:58151957-58151976 | None:intergenic | 45.0% | |
| GGTAGAAGGTCTCTATACTC+TGG | + | chr8.3:58151405-58151424 | None:intergenic | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr8.3:58149699-58149718 | MS.gene88490:CDS | 45.0% | |
| TCAGACAGCAGAAGAGGAAA+AGG | - | chr8.3:58151530-58151549 | MS.gene88490:intron | 45.0% | |
| TCGGATGAAGAAGAGGAATC+TGG | - | chr8.3:58151429-58151448 | MS.gene88490:intron | 45.0% | |
| TGAAGTAGAGTGACAGAGCA+AGG | + | chr8.3:58151923-58151942 | None:intergenic | 45.0% | |
| TGAGTAGTGTGTTCGAATCG+AGG | - | chr8.3:58151682-58151701 | MS.gene88490:CDS | 45.0% | |
| ! | ATCAGAGCAGTTCTGATCCA+GGG | - | chr8.3:58150685-58150704 | MS.gene88490:intron | 45.0% |
| ! | ATCCTCTGGTTTGATCGAAC+TGG | - | chr8.3:58151821-58151840 | MS.gene88490:intron | 45.0% |
| ! | GAGGAATTTTCGGCAGCAAT+AGG | + | chr8.3:58151854-58151873 | None:intergenic | 45.0% |
| ! | GCATCAGACACTCTCTTTTG+GGG | + | chr8.3:58151876-58151895 | None:intergenic | 45.0% |
| ! | TACTTCAAGTTATGGGACCC+TGG | - | chr8.3:58151936-58151955 | MS.gene88490:CDS | 45.0% |
| ! | TATCAGAGCAGTTCTGATCC+AGG | - | chr8.3:58150684-58150703 | MS.gene88490:intron | 45.0% |
| ! | TTTTGATGTCGTGGGAACAC+AGG | - | chr8.3:58151248-58151267 | MS.gene88490:intron | 45.0% |
| !! | ATCCAACTAGTTCTGTCACG+TGG | - | chr8.3:58150164-58150183 | MS.gene88490:intron | 45.0% |
| !! | GTGAAGAGTGGATTATCCTC+TGG | - | chr8.3:58151807-58151826 | MS.gene88490:intron | 45.0% |
| !!! | TTAACTATATTTTATTATTA+TGG | - | chr8.3:58150000-58150019 | MS.gene88490:CDS | 5.0% |
| AGATCATAGCCAGTCATCCC+TGG | + | chr8.3:58149711-58149730 | None:intergenic | 50.0% | |
| ATGCCACAATTTGACGGCAG+CGG | - | chr8.3:58151189-58151208 | MS.gene88490:intron | 50.0% | |
| CACCACGTGACAGAACTAGT+TGG | + | chr8.3:58150169-58150188 | None:intergenic | 50.0% | |
| CCAAGCTCTCGAATTCTTGG+AGG | - | chr8.3:58150575-58150594 | MS.gene88490:intron | 50.0% | |
| CCTCCAAGAATTCGAGAGCT+TGG | + | chr8.3:58150578-58150597 | None:intergenic | 50.0% | |
| GCCAGATCCAGATGTGTTTG+TGG | - | chr8.3:58151785-58151804 | MS.gene88490:intron | 50.0% | |
| TGCCAGTTCGATCAAACCAG+AGG | + | chr8.3:58151826-58151845 | None:intergenic | 50.0% | |
| TGGGTTTCACTCGAGTTTGG+CGG | - | chr8.3:58151738-58151757 | MS.gene88490:intron | 50.0% | |
| ! | GGATGGGTTTCACTCGAGTT+TGG | - | chr8.3:58151735-58151754 | MS.gene88490:intron | 50.0% |
| ! | TAGTTCTGTCACGTGGTGAC+TGG | - | chr8.3:58150171-58150190 | MS.gene88490:intron | 50.0% |
| ! | TTCAAGTTATGGGACCCTGG+TGG | - | chr8.3:58151939-58151958 | MS.gene88490:CDS | 50.0% |
| !! | TCAGACACTCTCTTTTGGGG+AGG | + | chr8.3:58151873-58151892 | None:intergenic | 50.0% |
| ACAGGAGGGTGAGAAGTTGC+TGG | - | chr8.3:58151266-58151285 | MS.gene88490:intron | 55.0% | |
| ACATCTGGATCTGGCGGCTT+TGG | + | chr8.3:58151780-58151799 | None:intergenic | 55.0% | |
| ACTGCCACCATACGAGAGCA+CGG | + | chr8.3:58151314-58151333 | None:intergenic | 55.0% | |
| GAAACCGTGCTCTCGTATGG+TGG | - | chr8.3:58151307-58151326 | MS.gene88490:intron | 55.0% | |
| GATGCCATCCACATGCGAGT+TGG | - | chr8.3:58151343-58151362 | MS.gene88490:intron | 55.0% | |
| GATGTCGTGGGAACACAGGA+GGG | - | chr8.3:58151252-58151271 | MS.gene88490:intron | 55.0% | |
| TCACCGCTGCCGTCAAATTG+TGG | + | chr8.3:58151195-58151214 | None:intergenic | 55.0% | |
| TGATGTCGTGGGAACACAGG+AGG | - | chr8.3:58151251-58151270 | MS.gene88490:intron | 55.0% | |
| TGCGAAACCGTGCTCTCGTA+TGG | - | chr8.3:58151304-58151323 | MS.gene88490:intron | 55.0% | |
| ! | TACGAGAGCACGGTTTCGCA+AGG | + | chr8.3:58151304-58151323 | None:intergenic | 55.0% |
| AACGCTCGCCAACTCGCATG+TGG | + | chr8.3:58151354-58151373 | None:intergenic | 60.0% | |
| ACGGCAGCGGTGACGCTTAT+TGG | - | chr8.3:58151202-58151221 | MS.gene88490:intron | 60.0% | |
| CACGTGGTGACTGGTGACCA+TGG | - | chr8.3:58150180-58150199 | MS.gene88490:intron | 60.0% | |
| CTCGCCAACTCGCATGTGGA+TGG | + | chr8.3:58151350-58151369 | None:intergenic | 60.0% | |
| CTCTCGTATGGTGGCAGTGG+TGG | - | chr8.3:58151316-58151335 | MS.gene88490:intron | 60.0% | |
| GCAGCGGTGACGCTTATTGG+TGG | - | chr8.3:58151205-58151224 | MS.gene88490:intron | 60.0% | |
| GCTTTGGCAACGGTGGAGGT+AGG | + | chr8.3:58151764-58151783 | None:intergenic | 60.0% | |
| GGAGGGTGAGAAGTTGCTGG+AGG | - | chr8.3:58151269-58151288 | MS.gene88490:intron | 60.0% | |
| GGGTGAGAAGTTGCTGGAGG+CGG | - | chr8.3:58151272-58151291 | MS.gene88490:intron | 60.0% | |
| GTGCTCTCGTATGGTGGCAG+TGG | - | chr8.3:58151313-58151332 | MS.gene88490:intron | 60.0% | |
| ! | GGATCTGGCGGCTTTGGCAA+CGG | + | chr8.3:58151774-58151793 | None:intergenic | 60.0% |
| ! | TCTGGCGGCTTTGGCAACGG+TGG | + | chr8.3:58151771-58151790 | None:intergenic | 65.0% |
| ! | GGCGGCTTTGGCAACGGTGG+AGG | + | chr8.3:58151768-58151787 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58149225 | 58151986 | 58149225 | ID=MS.gene88490 |
| chr8.3 | mRNA | 58149225 | 58151986 | 58149225 | ID=MS.gene88490.t1;Parent=MS.gene88490 |
| chr8.3 | exon | 58151890 | 58151986 | 58151890 | ID=MS.gene88490.t1.exon1;Parent=MS.gene88490.t1 |
| chr8.3 | CDS | 58151890 | 58151986 | 58151890 | ID=cds.MS.gene88490.t1;Parent=MS.gene88490.t1 |
| chr8.3 | exon | 58151634 | 58151734 | 58151634 | ID=MS.gene88490.t1.exon2;Parent=MS.gene88490.t1 |
| chr8.3 | CDS | 58151634 | 58151734 | 58151634 | ID=cds.MS.gene88490.t1;Parent=MS.gene88490.t1 |
| chr8.3 | exon | 58151465 | 58151542 | 58151465 | ID=MS.gene88490.t1.exon3;Parent=MS.gene88490.t1 |
| chr8.3 | CDS | 58151465 | 58151542 | 58151465 | ID=cds.MS.gene88490.t1;Parent=MS.gene88490.t1 |
| chr8.3 | exon | 58149225 | 58150070 | 58149225 | ID=MS.gene88490.t1.exon4;Parent=MS.gene88490.t1 |
| chr8.3 | CDS | 58149225 | 58150070 | 58149225 | ID=cds.MS.gene88490.t1;Parent=MS.gene88490.t1 |
| Gene Sequence |
| Protein sequence |
