Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88496.t1 | XP_003627845.1 | 95.2 | 330 | 13 | 1 | 1 | 330 | 1 | 327 | 4.20E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88496.t1 | Q94CK9 | 55.5 | 191 | 81 | 3 | 127 | 317 | 112 | 298 | 3.5e-31 | 137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88496.t1 | G7LG16 | 95.2 | 330 | 13 | 1 | 1 | 330 | 1 | 327 | 3.0e-108 | 401.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88496.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88496.t1 | MTR_8g039110 | 95.455 | 330 | 12 | 2 | 1 | 330 | 1 | 327 | 0.0 | 585 |
| MS.gene88496.t1 | MTR_0363s0040 | 94.064 | 219 | 10 | 2 | 1 | 219 | 1 | 216 | 3.25e-125 | 358 |
| MS.gene88496.t1 | MTR_3g014660 | 60.116 | 346 | 103 | 14 | 1 | 329 | 1 | 328 | 2.22e-113 | 332 |
| MS.gene88496.t1 | MTR_5g089750 | 43.173 | 271 | 130 | 7 | 42 | 301 | 159 | 416 | 4.99e-51 | 176 |
| MS.gene88496.t1 | MTR_8g076620 | 36.406 | 217 | 108 | 3 | 70 | 285 | 63 | 250 | 7.76e-36 | 132 |
| MS.gene88496.t1 | MTR_5g021130 | 45.062 | 162 | 80 | 4 | 127 | 287 | 100 | 253 | 9.10e-33 | 124 |
| MS.gene88496.t1 | MTR_3g112510 | 38.710 | 186 | 82 | 6 | 127 | 307 | 86 | 244 | 2.65e-30 | 117 |
| MS.gene88496.t1 | MTR_4g071110 | 36.571 | 175 | 73 | 4 | 116 | 290 | 6 | 142 | 6.93e-25 | 101 |
| MS.gene88496.t1 | MTR_1g023230 | 75.556 | 45 | 11 | 0 | 127 | 171 | 122 | 166 | 3.72e-18 | 82.8 |
| MS.gene88496.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 129 | 161 | 44 | 76 | 1.24e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88496.t1 | AT5G12330 | 40.683 | 322 | 162 | 10 | 1 | 317 | 1 | 298 | 7.73e-56 | 184 |
| MS.gene88496.t1 | AT5G12330 | 40.683 | 322 | 162 | 10 | 1 | 317 | 1 | 298 | 7.73e-56 | 184 |
| MS.gene88496.t1 | AT5G12330 | 40.683 | 322 | 162 | 10 | 1 | 317 | 88 | 385 | 2.27e-55 | 186 |
| MS.gene88496.t1 | AT3G54430 | 45.143 | 175 | 64 | 4 | 125 | 298 | 39 | 182 | 1.01e-38 | 135 |
| MS.gene88496.t1 | AT5G66350 | 40.556 | 180 | 89 | 1 | 113 | 292 | 106 | 267 | 2.82e-38 | 139 |
| MS.gene88496.t1 | AT5G66350 | 40.556 | 180 | 89 | 1 | 113 | 292 | 106 | 267 | 4.04e-38 | 138 |
| MS.gene88496.t1 | AT5G66350 | 40.556 | 180 | 89 | 1 | 113 | 292 | 106 | 267 | 4.17e-38 | 138 |
| MS.gene88496.t1 | AT1G75520 | 45.062 | 162 | 82 | 3 | 127 | 285 | 125 | 282 | 1.19e-37 | 137 |
| MS.gene88496.t1 | AT3G51060 | 46.250 | 160 | 62 | 5 | 127 | 283 | 144 | 282 | 1.17e-34 | 130 |
| MS.gene88496.t1 | AT1G19790 | 43.827 | 162 | 77 | 3 | 127 | 285 | 119 | 269 | 7.67e-34 | 127 |
| MS.gene88496.t1 | AT1G19790 | 43.827 | 162 | 77 | 3 | 127 | 285 | 119 | 269 | 7.67e-34 | 127 |
| MS.gene88496.t1 | AT2G21400 | 37.356 | 174 | 73 | 4 | 113 | 286 | 2 | 139 | 8.65e-30 | 112 |
| MS.gene88496.t1 | AT2G21400 | 37.356 | 174 | 73 | 4 | 113 | 286 | 3 | 140 | 8.98e-30 | 112 |
| MS.gene88496.t1 | AT4G36260 | 34.199 | 231 | 130 | 6 | 59 | 285 | 32 | 244 | 1.10e-29 | 115 |
| MS.gene88496.t1 | AT2G18120 | 37.423 | 163 | 76 | 2 | 127 | 289 | 72 | 208 | 1.92e-29 | 112 |
| MS.gene88496.t1 | AT2G18120 | 37.195 | 164 | 73 | 3 | 127 | 289 | 72 | 206 | 2.23e-29 | 112 |
| MS.gene88496.t1 | AT2G21400 | 35.057 | 174 | 62 | 4 | 113 | 286 | 2 | 124 | 9.33e-29 | 109 |
| MS.gene88496.t1 | AT2G21400 | 35.057 | 174 | 62 | 4 | 113 | 286 | 3 | 125 | 9.69e-29 | 109 |
| MS.gene88496.t1 | AT5G12330 | 37.615 | 218 | 114 | 7 | 1 | 213 | 1 | 201 | 3.87e-27 | 106 |
| MS.gene88496.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 127 | 176 | 17 | 66 | 2.91e-20 | 84.7 |
| MS.gene88496.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 127 | 176 | 52 | 101 | 2.91e-19 | 84.0 |
Find 66 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAAAATGGTGAGTTTA+GGG | 0.296289 | 8.3:+58268424 | MS.gene88496:CDS |
| TCATTGTAATTGTTATTGTT+AGG | 0.303182 | 8.3:-58268257 | None:intergenic |
| GTGAGGAAAATGGTGAGTTT+AGG | 0.340272 | 8.3:+58268423 | MS.gene88496:CDS |
| CATTGTAATTGTTATTGTTA+GGG | 0.340659 | 8.3:-58268256 | None:intergenic |
| CTATGAGAACCAAGTCTCTT+AGG | 0.342592 | 8.3:-58268085 | None:intergenic |
| TGAAGATGAACTTGCTTACT+TGG | 0.368954 | 8.3:+58269388 | MS.gene88496:CDS |
| AGTGATGGTGGTGCTTCTTC+TGG | 0.380721 | 8.3:+58268611 | MS.gene88496:CDS |
| GATGAAGGTAAGGGAATGTT+TGG | 0.393591 | 8.3:-58268167 | None:intergenic |
| ATGTTCTTCTTCTGCAATTG+AGG | 0.412235 | 8.3:+58269544 | MS.gene88496:CDS |
| TGCCAATAGCAGATACTCTA+TGG | 0.417109 | 8.3:-58269361 | None:intergenic |
| ATGATGGGGTGTGAGGAAAA+TGG | 0.439286 | 8.3:+58268413 | MS.gene88496:CDS |
| TGCCATAGAGTATCTGCTAT+TGG | 0.440334 | 8.3:+58269359 | MS.gene88496:CDS |
| TGTTGGTTGTGAAGTGATGA+AGG | 0.446919 | 8.3:-58268116 | None:intergenic |
| TGGATTATGATCTGATGAAA+TGG | 0.452099 | 8.3:-58268147 | None:intergenic |
| TATGATCTGATGAAATGGTT+TGG | 0.460879 | 8.3:-58268142 | None:intergenic |
| TTTAGGGTTTGTCAAGATTG+TGG | 0.461202 | 8.3:+58268440 | MS.gene88496:CDS |
| GAATTGCAACTTGGAAGTAA+TGG | 0.469782 | 8.3:+58269500 | MS.gene88496:CDS |
| CAATCTCAACAAGCAGAGGC+AGG | 0.472994 | 8.3:-58269584 | None:intergenic |
| ATTGTAGCTATAAAAGATGT+AGG | 0.473288 | 8.3:+58268480 | MS.gene88496:CDS |
| TAGAGCTGATGATGAAGGTA+AGG | 0.474808 | 8.3:-58268177 | None:intergenic |
| TCATCATTACTTGTTGTGGT+TGG | 0.483361 | 8.3:-58268322 | None:intergenic |
| AGATGTAGGACTTGCTGTAA+AGG | 0.484304 | 8.3:+58268494 | MS.gene88496:CDS |
| TCAGCTCTAAGTGTTGGTCT+TGG | 0.484915 | 8.3:+58268191 | MS.gene88496:CDS |
| AAAGGGTTTCTCTATGATCA+AGG | 0.488489 | 8.3:+58269440 | MS.gene88496:CDS |
| CATGTTAGGCCTAAGAGACT+TGG | 0.493330 | 8.3:+58268076 | MS.gene88496:CDS |
| TTCATCATCATTACTTGTTG+TGG | 0.498315 | 8.3:-58268326 | None:intergenic |
| AATCAAAATTCTCTGCCTCT+TGG | 0.499143 | 8.3:-58268636 | None:intergenic |
| CGTGAAGAGCACGTGGATAC+CGG | 0.503179 | 8.3:+58268541 | MS.gene88496:CDS |
| CAACTTGGAAGTAATGGAAG+TGG | 0.519956 | 8.3:+58269506 | MS.gene88496:CDS |
| TAAGTGGCCATGTATTCAAA+GGG | 0.529963 | 8.3:+58269423 | MS.gene88496:CDS |
| GGCAAAGTCTGCTTGAAACC+AGG | 0.531084 | 8.3:-58269305 | None:intergenic |
| AGAGAAACCCTTTGAATACA+TGG | 0.531479 | 8.3:-58269430 | None:intergenic |
| ATAAGTGGCCATGTATTCAA+AGG | 0.532258 | 8.3:+58269422 | MS.gene88496:CDS |
| TTGGCCACTGTGAATATAAG+TGG | 0.544977 | 8.3:+58269407 | MS.gene88496:CDS |
| GCAGGCGCGCGAACATAGCG+AGG | 0.545668 | 8.3:-58269326 | None:intergenic |
| CTATGGCACTTGAAAACAGC+AGG | 0.559201 | 8.3:-58269344 | None:intergenic |
| CGGTCCCGTCTCATCGAAGC+CGG | 0.561361 | 8.3:-58268560 | None:intergenic |
| GGGTGAGTGGTGGTTAGTAG+TGG | 0.566513 | 8.3:-58268221 | None:intergenic |
| AGAGTATCTGCTATTGGCAA+TGG | 0.570693 | 8.3:+58269365 | MS.gene88496:CDS |
| GCTTAAACTTCTAGTTCTAG+TGG | 0.572204 | 8.3:-58268714 | None:intergenic |
| AGGACTTGCTGTAAAGGTCG+TGG | 0.574448 | 8.3:+58268500 | MS.gene88496:CDS |
| GAGACGGGACCGGAGTATGA+TGG | 0.578242 | 8.3:+58268571 | MS.gene88496:CDS |
| ACACTTAGAGCTGATGATGA+AGG | 0.580452 | 8.3:-58268182 | None:intergenic |
| TGTGTTTCAGAATTGCAACT+TGG | 0.580875 | 8.3:+58269491 | MS.gene88496:CDS |
| GGATACCGGCTTCGATGAGA+CGG | 0.585711 | 8.3:+58268555 | MS.gene88496:CDS |
| CGGAGTATGATGGTGGCTGA+AGG | 0.587151 | 8.3:+58268581 | MS.gene88496:CDS |
| GCTGAAGGTGGTGACAGTGA+TGG | 0.591111 | 8.3:+58268596 | MS.gene88496:CDS |
| TCATCATCAGCTCTAAGTGT+TGG | 0.595371 | 8.3:+58268185 | MS.gene88496:CDS |
| GAAGGTGGTGACAGTGATGG+TGG | 0.597594 | 8.3:+58268599 | MS.gene88496:CDS |
| TTGATGATGAGGGTGAGTGG+TGG | 0.600442 | 8.3:-58268231 | None:intergenic |
| CGGCTTCGATGAGACGGGAC+CGG | 0.606559 | 8.3:+58268561 | MS.gene88496:CDS |
| CTTGATGATGATGGGGTGTG+AGG | 0.610289 | 8.3:+58268406 | MS.gene88496:CDS |
| AGAGCTGATGATGAAGGTAA+GGG | 0.617936 | 8.3:-58268176 | None:intergenic |
| GATACCGGCTTCGATGAGAC+GGG | 0.619399 | 8.3:+58268556 | MS.gene88496:CDS |
| AATCTCAACAAGCAGAGGCA+GGG | 0.619976 | 8.3:-58269583 | None:intergenic |
| GTTGTGGTTGGCACATCTTG+AGG | 0.623886 | 8.3:-58268310 | None:intergenic |
| GGTGAGTGGTGGTTAGTAGT+GGG | 0.627587 | 8.3:-58268220 | None:intergenic |
| AAAGCAATCTCAACAAGCAG+AGG | 0.639282 | 8.3:-58269588 | None:intergenic |
| GTGCTTCTTCTGGTACCAAG+AGG | 0.651535 | 8.3:+58268621 | MS.gene88496:CDS |
| CTTCAGCCACCATCATACTC+CGG | 0.656848 | 8.3:-58268580 | None:intergenic |
| AGTATGATGGTGGCTGAAGG+TGG | 0.658861 | 8.3:+58268584 | MS.gene88496:CDS |
| ATAACTAGCTCTTGTCACCA+AGG | 0.669802 | 8.3:+58268743 | MS.gene88496:CDS |
| GTACTCACGTGAAGAGCACG+TGG | 0.684544 | 8.3:+58268534 | MS.gene88496:CDS |
| AGTTGCAATTCTGAAACACA+AGG | 0.685469 | 8.3:-58269488 | None:intergenic |
| ACGGGACCGGAGTATGATGG+TGG | 0.723586 | 8.3:+58268574 | MS.gene88496:CDS |
| ATGGCCACTTATATTCACAG+TGG | 0.791885 | 8.3:-58269411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATGATTTATTTTAATCA+TGG | - | chr8.3:58268786-58268805 | None:intergenic | 10.0% |
| !!! | TTGTTATTTCATAAATTTAA+GGG | + | chr8.3:58269043-58269062 | MS.gene88496:intron | 10.0% |
| !!! | TTTGTTATTTCATAAATTTA+AGG | + | chr8.3:58269042-58269061 | MS.gene88496:intron | 10.0% |
| !! | ATTAAAAAAAGTGAGTAAAT+AGG | - | chr8.3:58269112-58269131 | None:intergenic | 15.0% |
| !!! | GTTTACAAAACTTTTTTTTA+TGG | + | chr8.3:58268814-58268833 | MS.gene88496:intron | 15.0% |
| !!! | CATTGTAATTGTTATTGTTA+GGG | - | chr8.3:58268259-58268278 | None:intergenic | 20.0% |
| !!! | TCATTGTAATTGTTATTGTT+AGG | - | chr8.3:58268260-58268279 | None:intergenic | 20.0% |
| !!! | TCATTGTTACTTTATAAACT+AGG | + | chr8.3:58269135-58269154 | MS.gene88496:intron | 20.0% |
| !!! | TTTTTCTATTAACCAAACTT+AGG | - | chr8.3:58269191-58269210 | None:intergenic | 20.0% |
| ! | AATTGTGTATATCCTAAGTT+TGG | + | chr8.3:58269176-58269195 | MS.gene88496:intron | 25.0% |
| ! | ATTGTAGCTATAAAAGATGT+AGG | + | chr8.3:58268480-58268499 | MS.gene88496:CDS | 25.0% |
| ! | CGGATAATGATTTACAAAAA+TGG | + | chr8.3:58268903-58268922 | MS.gene88496:intron | 25.0% |
| !!! | AAACAAAAACTTGATGATGA+TGG | + | chr8.3:58268397-58268416 | MS.gene88496:CDS | 25.0% |
| !!! | AACAAAAACTTGATGATGAT+GGG | + | chr8.3:58268398-58268417 | MS.gene88496:CDS | 25.0% |
| ATCAATCAATTTAGTCTCAG+AGG | - | chr8.3:58269002-58269021 | None:intergenic | 30.0% | |
| TATGATCTGATGAAATGGTT+TGG | - | chr8.3:58268145-58268164 | None:intergenic | 30.0% | |
| TGGATTATGATCTGATGAAA+TGG | - | chr8.3:58268150-58268169 | None:intergenic | 30.0% | |
| TTGTAAATCATTATCCGTGT+CGG | - | chr8.3:58268900-58268919 | None:intergenic | 30.0% | |
| ! | TTCATCAAGACTCAAGTTTT+TGG | + | chr8.3:58268285-58268304 | MS.gene88496:CDS | 30.0% |
| ! | TTCATCATCATTACTTGTTG+TGG | - | chr8.3:58268329-58268348 | None:intergenic | 30.0% |
| !! | AACAAAAAGTGAAAGTACCT+TGG | - | chr8.3:58268763-58268782 | None:intergenic | 30.0% |
| !! | ACAAAAACTTGATGATGATG+GGG | + | chr8.3:58268399-58268418 | MS.gene88496:CDS | 30.0% |
| !!! | ATGAAATGGTTTGGTTTTGT+TGG | - | chr8.3:58268136-58268155 | None:intergenic | 30.0% |
| AAAGGGTTTCTCTATGATCA+AGG | + | chr8.3:58269440-58269459 | MS.gene88496:CDS | 35.0% | |
| AATCAAAATTCTCTGCCTCT+TGG | - | chr8.3:58268639-58268658 | None:intergenic | 35.0% | |
| AGAGAAACCCTTTGAATACA+TGG | - | chr8.3:58269433-58269452 | None:intergenic | 35.0% | |
| ATAAGTGGCCATGTATTCAA+AGG | + | chr8.3:58269422-58269441 | MS.gene88496:CDS | 35.0% | |
| ATGTTCTTCTTCTGCAATTG+AGG | + | chr8.3:58269544-58269563 | MS.gene88496:CDS | 35.0% | |
| GAATTGCAACTTGGAAGTAA+TGG | + | chr8.3:58269500-58269519 | MS.gene88496:CDS | 35.0% | |
| GCATAATCCAGTGTAATCAT+AGG | + | chr8.3:58268925-58268944 | MS.gene88496:intron | 35.0% | |
| TAAGTGGCCATGTATTCAAA+GGG | + | chr8.3:58269423-58269442 | MS.gene88496:CDS | 35.0% | |
| TGAGGAAAATGGTGAGTTTA+GGG | + | chr8.3:58268424-58268443 | MS.gene88496:CDS | 35.0% | |
| TGGTTAATAGAAAAATGCCC+CGG | + | chr8.3:58269196-58269215 | MS.gene88496:intron | 35.0% | |
| TGTGTTTCAGAATTGCAACT+TGG | + | chr8.3:58269491-58269510 | MS.gene88496:CDS | 35.0% | |
| ! | TGAAGATGAACTTGCTTACT+TGG | + | chr8.3:58269388-58269407 | MS.gene88496:CDS | 35.0% |
| ! | TTTAGGGTTTGTCAAGATTG+TGG | + | chr8.3:58268440-58268459 | MS.gene88496:CDS | 35.0% |
| !! | AGTTGCAATTCTGAAACACA+AGG | - | chr8.3:58269491-58269510 | None:intergenic | 35.0% |
| !! | GCTTAAACTTCTAGTTCTAG+TGG | - | chr8.3:58268717-58268736 | None:intergenic | 35.0% |
| !! | TCATCATTACTTGTTGTGGT+TGG | - | chr8.3:58268325-58268344 | None:intergenic | 35.0% |
| !!! | TGTTAGGGTTTTGATGATGA+GGG | - | chr8.3:58268244-58268263 | None:intergenic | 35.0% |
| !!! | TTGTTAGGGTTTTGATGATG+AGG | - | chr8.3:58268245-58268264 | None:intergenic | 35.0% |
| ATGGCCACTTATATTCACAG+TGG | - | chr8.3:58269414-58269433 | None:intergenic | 40.0% | |
| CTATGAGAACCAAGTCTCTT+AGG | - | chr8.3:58268088-58268107 | None:intergenic | 40.0% | |
| GATGAAGGTAAGGGAATGTT+TGG | - | chr8.3:58268170-58268189 | None:intergenic | 40.0% | |
| GTGAGGAAAATGGTGAGTTT+AGG | + | chr8.3:58268423-58268442 | MS.gene88496:CDS | 40.0% | |
| TGCCAATAGCAGATACTCTA+TGG | - | chr8.3:58269364-58269383 | None:intergenic | 40.0% | |
| TGTTTGTGAATTGCAGATCC+TGG | + | chr8.3:58269287-58269306 | MS.gene88496:intron | 40.0% | |
| TTAATAGAAAAATGCCCCGG+AGG | + | chr8.3:58269199-58269218 | MS.gene88496:intron | 40.0% | |
| TTGGCCACTGTGAATATAAG+TGG | + | chr8.3:58269407-58269426 | MS.gene88496:CDS | 40.0% | |
| ! | ACACTTAGAGCTGATGATGA+AGG | - | chr8.3:58268185-58268204 | None:intergenic | 40.0% |
| ! | AGAGCTGATGATGAAGGTAA+GGG | - | chr8.3:58268179-58268198 | None:intergenic | 40.0% |
| ! | AGAGTATCTGCTATTGGCAA+TGG | + | chr8.3:58269365-58269384 | MS.gene88496:CDS | 40.0% |
| ! | ATAACTAGCTCTTGTCACCA+AGG | + | chr8.3:58268743-58268762 | MS.gene88496:CDS | 40.0% |
| ! | CAACTTGGAAGTAATGGAAG+TGG | + | chr8.3:58269506-58269525 | MS.gene88496:CDS | 40.0% |
| ! | TAGAGCTGATGATGAAGGTA+AGG | - | chr8.3:58268180-58268199 | None:intergenic | 40.0% |
| ! | TGCCATAGAGTATCTGCTAT+TGG | + | chr8.3:58269359-58269378 | MS.gene88496:CDS | 40.0% |
| ! | TGTAATCATAGGTGTCGTGT+CGG | + | chr8.3:58268936-58268955 | MS.gene88496:intron | 40.0% |
| ! | TGTTGGTTGTGAAGTGATGA+AGG | - | chr8.3:58268119-58268138 | None:intergenic | 40.0% |
| !! | AGATGTAGGACTTGCTGTAA+AGG | + | chr8.3:58268494-58268513 | MS.gene88496:CDS | 40.0% |
| !! | TCATCATCAGCTCTAAGTGT+TGG | + | chr8.3:58268185-58268204 | MS.gene88496:CDS | 40.0% |
| CACGACACCTATGATTACAC+TGG | - | chr8.3:58268935-58268954 | None:intergenic | 45.0% | |
| CATGTTAGGCCTAAGAGACT+TGG | + | chr8.3:58268076-58268095 | MS.gene88496:CDS | 45.0% | |
| CTATGGCACTTGAAAACAGC+AGG | - | chr8.3:58269347-58269366 | None:intergenic | 45.0% | |
| GTCAGAGAGGTAGACACAAT+TGG | + | chr8.3:58269229-58269248 | MS.gene88496:intron | 45.0% | |
| TGTCCGTGTTTCATAGGTCT+CGG | - | chr8.3:58268840-58268859 | None:intergenic | 45.0% | |
| ! | ATGATGGGGTGTGAGGAAAA+TGG | + | chr8.3:58268413-58268432 | MS.gene88496:CDS | 45.0% |
| !! | ATTTAGTCTCAGAGGTGTCC+TGG | - | chr8.3:58268994-58269013 | None:intergenic | 45.0% |
| !! | TCAGCTCTAAGTGTTGGTCT+TGG | + | chr8.3:58268191-58268210 | MS.gene88496:CDS | 45.0% |
| !!! | GTTTTGATGATGAGGGTGAG+TGG | - | chr8.3:58268237-58268256 | None:intergenic | 45.0% |
| CGAACACGAACATACCGACA+CGG | + | chr8.3:58268883-58268902 | MS.gene88496:intron | 50.0% | |
| CTTCAGCCACCATCATACTC+CGG | - | chr8.3:58268583-58268602 | None:intergenic | 50.0% | |
| GGCAAAGTCTGCTTGAAACC+AGG | - | chr8.3:58269308-58269327 | None:intergenic | 50.0% | |
| GGTGAGTGGTGGTTAGTAGT+GGG | - | chr8.3:58268223-58268242 | None:intergenic | 50.0% | |
| GTCTGGTGTCCGTGTTTCAT+AGG | - | chr8.3:58268846-58268865 | None:intergenic | 50.0% | |
| GTGCTTCTTCTGGTACCAAG+AGG | + | chr8.3:58268621-58268640 | MS.gene88496:CDS | 50.0% | |
| GTTGTGGTTGGCACATCTTG+AGG | - | chr8.3:58268313-58268332 | None:intergenic | 50.0% | |
| TGGCCGAGACCTATGAAACA+CGG | + | chr8.3:58268834-58268853 | MS.gene88496:intron | 50.0% | |
| ! | ATCGACTTATGTCCGACACC+AGG | + | chr8.3:58268973-58268992 | MS.gene88496:intron | 50.0% |
| ! | CATAGGTGTCGTGTCGGTAT+CGG | + | chr8.3:58268942-58268961 | MS.gene88496:intron | 50.0% |
| !! | AGGACTTGCTGTAAAGGTCG+TGG | + | chr8.3:58268500-58268519 | MS.gene88496:CDS | 50.0% |
| !! | AGTATGATGGTGGCTGAAGG+TGG | + | chr8.3:58268584-58268603 | MS.gene88496:CDS | 50.0% |
| !! | AGTGATGGTGGTGCTTCTTC+TGG | + | chr8.3:58268611-58268630 | MS.gene88496:CDS | 50.0% |
| !! | CTTGATGATGATGGGGTGTG+AGG | + | chr8.3:58268406-58268425 | MS.gene88496:CDS | 50.0% |
| !! | TTGATGATGAGGGTGAGTGG+TGG | - | chr8.3:58268234-58268253 | None:intergenic | 50.0% |
| AGAAAAATGCCCCGGAGGCA+CGG | + | chr8.3:58269204-58269223 | MS.gene88496:intron | 55.0% | |
| GAAGGTGGTGACAGTGATGG+TGG | + | chr8.3:58268599-58268618 | MS.gene88496:CDS | 55.0% | |
| GCTGAAGGTGGTGACAGTGA+TGG | + | chr8.3:58268596-58268615 | MS.gene88496:CDS | 55.0% | |
| GGGTGAGTGGTGGTTAGTAG+TGG | - | chr8.3:58268224-58268243 | None:intergenic | 55.0% | |
| TGTCGTGTTCGTGTCGTGTC+TGG | - | chr8.3:58268863-58268882 | None:intergenic | 55.0% | |
| ! | CGTGAAGAGCACGTGGATAC+CGG | + | chr8.3:58268541-58268560 | MS.gene88496:CDS | 55.0% |
| ! | GTACTCACGTGAAGAGCACG+TGG | + | chr8.3:58268534-58268553 | MS.gene88496:CDS | 55.0% |
| !! | CGGAGTATGATGGTGGCTGA+AGG | + | chr8.3:58268581-58268600 | MS.gene88496:CDS | 55.0% |
| !! | GATACCGGCTTCGATGAGAC+GGG | + | chr8.3:58268556-58268575 | MS.gene88496:CDS | 55.0% |
| !! | GGATACCGGCTTCGATGAGA+CGG | + | chr8.3:58268555-58268574 | MS.gene88496:CDS | 55.0% |
| !! | TCTCAGAGGTGTCCTGGTGT+CGG | - | chr8.3:58268988-58269007 | None:intergenic | 55.0% |
| !! | TGTCGTGTCGGTATCGGTGT+TGG | + | chr8.3:58268948-58268967 | MS.gene88496:intron | 55.0% |
| ACGGGACCGGAGTATGATGG+TGG | + | chr8.3:58268574-58268593 | MS.gene88496:CDS | 60.0% | |
| GAGACGGGACCGGAGTATGA+TGG | + | chr8.3:58268571-58268590 | MS.gene88496:CDS | 60.0% | |
| CGGCTTCGATGAGACGGGAC+CGG | + | chr8.3:58268561-58268580 | MS.gene88496:CDS | 65.0% | |
| CGGTCCCGTCTCATCGAAGC+CGG | - | chr8.3:58268563-58268582 | None:intergenic | 65.0% | |
| CTCTCTGACGACCGTGCCTC+CGG | - | chr8.3:58269218-58269237 | None:intergenic | 65.0% | |
| TCTCTGACGACCGTGCCTCC+GGG | - | chr8.3:58269217-58269236 | None:intergenic | 65.0% | |
| CTCTGACGACCGTGCCTCCG+GGG | - | chr8.3:58269216-58269235 | None:intergenic | 70.0% | |
| GCAGGCGCGCGAACATAGCG+AGG | - | chr8.3:58269329-58269348 | None:intergenic | 70.0% | |
| ! | CGGAGGCACGGTCGTCAGAG+AGG | + | chr8.3:58269216-58269235 | MS.gene88496:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58268071 | 58269601 | 58268071 | ID=MS.gene88496 |
| chr8.3 | mRNA | 58268071 | 58269601 | 58268071 | ID=MS.gene88496.t1;Parent=MS.gene88496 |
| chr8.3 | exon | 58268071 | 58268764 | 58268071 | ID=MS.gene88496.t1.exon1;Parent=MS.gene88496.t1 |
| chr8.3 | CDS | 58268071 | 58268764 | 58268071 | ID=cds.MS.gene88496.t1;Parent=MS.gene88496.t1 |
| chr8.3 | exon | 58269303 | 58269601 | 58269303 | ID=MS.gene88496.t1.exon2;Parent=MS.gene88496.t1 |
| chr8.3 | CDS | 58269303 | 58269601 | 58269303 | ID=cds.MS.gene88496.t1;Parent=MS.gene88496.t1 |
| Gene Sequence |
| Protein sequence |
