Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88578.t1 | RHN78369.1 | 86.7 | 588 | 57 | 1 | 1 | 588 | 18 | 584 | 1.50E-294 | 1021.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88578.t1 | Q336N8 | 51.3 | 497 | 237 | 3 | 13 | 507 | 88 | 581 | 2.3e-142 | 507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88578.t1 | G7IBD2 | 86.7 | 588 | 57 | 1 | 1 | 588 | 1 | 567 | 1.1e-294 | 1021.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88578.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88578.t1 | MTR_1g038400 | 90.986 | 588 | 32 | 1 | 1 | 588 | 1 | 567 | 0.0 | 1083 |
| MS.gene88578.t1 | MTR_1g038370 | 74.010 | 581 | 124 | 4 | 22 | 597 | 2 | 560 | 0.0 | 873 |
| MS.gene88578.t1 | MTR_5g029370 | 56.818 | 484 | 208 | 1 | 10 | 493 | 71 | 553 | 0.0 | 593 |
| MS.gene88578.t1 | MTR_5g029370 | 56.818 | 484 | 208 | 1 | 10 | 493 | 71 | 553 | 0.0 | 593 |
| MS.gene88578.t1 | MTR_7g407000 | 76.389 | 144 | 16 | 2 | 201 | 343 | 28 | 154 | 2.34e-70 | 224 |
| MS.gene88578.t1 | MTR_3g075210 | 37.875 | 367 | 192 | 8 | 21 | 366 | 11 | 362 | 3.97e-66 | 235 |
| MS.gene88578.t1 | MTR_8g089260 | 35.917 | 387 | 175 | 9 | 24 | 345 | 29 | 407 | 3.86e-54 | 199 |
| MS.gene88578.t1 | MTR_1g078070 | 29.815 | 540 | 284 | 15 | 24 | 483 | 146 | 670 | 4.56e-52 | 193 |
| MS.gene88578.t1 | MTR_1g078070 | 29.815 | 540 | 284 | 15 | 24 | 483 | 146 | 670 | 9.52e-52 | 192 |
| MS.gene88578.t1 | MTR_1g094740 | 44.681 | 188 | 100 | 1 | 172 | 359 | 291 | 474 | 9.10e-51 | 189 |
| MS.gene88578.t1 | MTR_5g010300 | 33.666 | 401 | 226 | 14 | 107 | 484 | 302 | 685 | 1.20e-50 | 189 |
| MS.gene88578.t1 | MTR_5g010300 | 33.666 | 401 | 226 | 14 | 107 | 484 | 302 | 685 | 1.36e-50 | 189 |
| MS.gene88578.t1 | MTR_5g010300 | 33.666 | 401 | 226 | 14 | 107 | 484 | 302 | 685 | 1.46e-50 | 189 |
| MS.gene88578.t1 | MTR_2g047130 | 33.911 | 404 | 188 | 11 | 24 | 359 | 48 | 440 | 5.60e-50 | 187 |
| MS.gene88578.t1 | MTR_2g047130 | 33.911 | 404 | 188 | 11 | 24 | 359 | 45 | 437 | 5.99e-50 | 186 |
| MS.gene88578.t1 | MTR_5g010300 | 38.983 | 295 | 151 | 8 | 107 | 382 | 302 | 586 | 1.47e-49 | 186 |
| MS.gene88578.t1 | MTR_7g097070 | 28.205 | 312 | 207 | 8 | 176 | 476 | 338 | 643 | 7.32e-26 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88578.t1 | AT5G46910 | 53.659 | 492 | 227 | 1 | 2 | 493 | 77 | 567 | 0.0 | 573 |
| MS.gene88578.t1 | AT5G46910 | 53.659 | 492 | 227 | 1 | 2 | 493 | 77 | 567 | 0.0 | 572 |
| MS.gene88578.t1 | AT3G48430 | 34.383 | 381 | 206 | 9 | 17 | 359 | 9 | 383 | 1.89e-58 | 212 |
| MS.gene88578.t1 | AT2G34880 | 30.948 | 559 | 300 | 18 | 25 | 515 | 58 | 598 | 5.19e-58 | 208 |
| MS.gene88578.t1 | AT4G20400 | 27.435 | 616 | 349 | 15 | 24 | 551 | 52 | 657 | 1.24e-56 | 206 |
| MS.gene88578.t1 | AT1G63490 | 40.959 | 271 | 134 | 6 | 107 | 360 | 46 | 307 | 1.02e-54 | 201 |
| MS.gene88578.t1 | AT1G63490 | 40.959 | 271 | 134 | 6 | 107 | 360 | 299 | 560 | 1.57e-54 | 201 |
| MS.gene88578.t1 | AT1G63490 | 40.959 | 271 | 134 | 6 | 107 | 360 | 299 | 560 | 1.61e-54 | 201 |
| MS.gene88578.t1 | AT4G20400 | 27.815 | 604 | 338 | 15 | 36 | 551 | 7 | 600 | 1.50e-53 | 196 |
| MS.gene88578.t1 | AT1G30810 | 30.370 | 540 | 278 | 16 | 24 | 483 | 55 | 576 | 1.07e-52 | 193 |
| MS.gene88578.t1 | AT1G30810 | 30.370 | 540 | 278 | 16 | 24 | 483 | 55 | 576 | 1.07e-52 | 193 |
| MS.gene88578.t1 | AT1G30810 | 30.370 | 540 | 278 | 16 | 24 | 483 | 55 | 576 | 1.07e-52 | 193 |
| MS.gene88578.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 157 | 565 | 3.01e-52 | 194 |
| MS.gene88578.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 3.95e-52 | 193 |
| MS.gene88578.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 3.95e-52 | 193 |
| MS.gene88578.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 3.95e-52 | 193 |
| MS.gene88578.t1 | AT5G04240 | 46.809 | 188 | 96 | 1 | 172 | 359 | 259 | 442 | 2.85e-51 | 191 |
| MS.gene88578.t1 | AT2G38950 | 28.947 | 380 | 215 | 11 | 22 | 359 | 102 | 468 | 1.23e-31 | 130 |
| MS.gene88578.t1 | AT1G63490 | 51.724 | 87 | 42 | 0 | 274 | 360 | 15 | 101 | 1.05e-23 | 106 |
Find 92 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCATTCTACAGTCTTTC+TGG | 0.125843 | 1.4:+23230648 | MS.gene88578:CDS |
| AAACAATTGTACAACCTCTT+AGG | 0.170459 | 1.4:+23228738 | MS.gene88578:CDS |
| TTGATTTGGATGATCTAAAT+TGG | 0.198966 | 1.4:+23228390 | MS.gene88578:CDS |
| TGTCTTAATGAAAGAGAAAA+AGG | 0.225632 | 1.4:+23228703 | MS.gene88578:CDS |
| TTGGTGATTGGTTTCCATTT+GGG | 0.283394 | 1.4:+23230480 | MS.gene88578:CDS |
| CAAATCGAGTAAATTTGATT+TGG | 0.293057 | 1.4:+23228376 | MS.gene88578:CDS |
| TCCTGCAATATCTTCTGTTT+TGG | 0.293249 | 1.4:+23231486 | MS.gene88578:CDS |
| GCTCCCGAGGCTTCTAAATA+TGG | 0.295796 | 1.4:+23228494 | MS.gene88578:CDS |
| AATCCAGCATGATATGAATT+AGG | 0.298533 | 1.4:-23229920 | None:intergenic |
| TTGGCAGCATCTTCGAGTTC+TGG | 0.307945 | 1.4:-23230995 | None:intergenic |
| GCAGGATTAGTGGCACTAAT+TGG | 0.313079 | 1.4:-23228674 | None:intergenic |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.4:-23230542 | None:intergenic |
| GAGAAGGGAACAGTTGAGTA+TGG | 0.324983 | 1.4:+23229029 | MS.gene88578:CDS |
| ATAAAGGGTTCGCGGTCTTT+TGG | 0.338413 | 1.4:-23231425 | None:intergenic |
| ATTGGTGATTGGTTTCCATT+TGG | 0.339040 | 1.4:+23230479 | MS.gene88578:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.4:-23230551 | None:intergenic |
| GGATGGTAAACTGGACATTC+TGG | 0.345953 | 1.4:-23228425 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.347643 | 1.4:-23230827 | None:intergenic |
| TGTTCTGATGGATGGTAAAC+TGG | 0.349116 | 1.4:-23228434 | None:intergenic |
| TATATCCTTCTCATTCCATT+TGG | 0.357030 | 1.4:-23228765 | None:intergenic |
| AGCTCTTCAAATACATCATT+AGG | 0.370354 | 1.4:+23230731 | MS.gene88578:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.4:+23230468 | MS.gene88578:CDS |
| AACGAGCAAATTCAATTTGA+AGG | 0.385845 | 1.4:+23229103 | MS.gene88578:CDS |
| CTCGTTCCAAGTTTATCATC+AGG | 0.404036 | 1.4:-23229086 | None:intergenic |
| GAAGAACTGTCAACTCTGTA+AGG | 0.420264 | 1.4:+23231284 | MS.gene88578:CDS |
| ACAAGAATTTGAGCATCCTT+TGG | 0.422698 | 1.4:+23228454 | MS.gene88578:CDS |
| GACGCATTCAATCATACTAT+AGG | 0.423103 | 1.4:-23231074 | None:intergenic |
| GACAAAATCAGCAGGATTAG+TGG | 0.424845 | 1.4:-23228684 | None:intergenic |
| AACAATTGTACAACCTCTTA+GGG | 0.425417 | 1.4:+23228739 | MS.gene88578:CDS |
| TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1.4:-23229845 | None:intergenic |
| TTTCTTGCTGCAGCCCCAAA+TGG | 0.452844 | 1.4:-23230494 | None:intergenic |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.4:+23230461 | MS.gene88578:CDS |
| AATTGAAAGGCTGCAGAACT+AGG | 0.454817 | 1.4:-23229719 | None:intergenic |
| TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1.4:-23228446 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.4:+23230538 | MS.gene88578:CDS |
| ACTGAAAGCAGAATGATAAT+CGG | 0.460027 | 1.4:+23231242 | MS.gene88578:intron |
| TTCATTAAGACAAAATCAGC+AGG | 0.464993 | 1.4:-23228692 | None:intergenic |
| ACATGATGTGCCGGTTTACA+AGG | 0.470430 | 1.4:+23229862 | MS.gene88578:CDS |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.4:+23229878 | MS.gene88578:CDS |
| TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1.4:+23229917 | MS.gene88578:CDS |
| AACCTCTTAGGGTTTCCAAA+TGG | 0.496635 | 1.4:+23228750 | MS.gene88578:CDS |
| ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1.4:+23228908 | MS.gene88578:CDS |
| TGACATGCAGCCTCTGCCAT+AGG | 0.501176 | 1.4:+23230759 | MS.gene88578:CDS |
| ACCAAAACAGAAGATATTGC+AGG | 0.502442 | 1.4:-23231487 | None:intergenic |
| TTCCATTTGGAAACCCTAAG+AGG | 0.509714 | 1.4:-23228752 | None:intergenic |
| CAAATTCTTGTTCTGATGGA+TGG | 0.515818 | 1.4:-23228442 | None:intergenic |
| TGCTATTTAGTATGTTTGCA+TGG | 0.515999 | 1.4:+23229537 | MS.gene88578:CDS |
| TGGTGATTGGTTTCCATTTG+GGG | 0.516058 | 1.4:+23230481 | MS.gene88578:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1.4:+23229564 | MS.gene88578:CDS |
| AGGATATAATAACCTTCTCT+AGG | 0.523941 | 1.4:+23228780 | MS.gene88578:CDS |
| CTCAAATTATAAAGGGTTCG+CGG | 0.531379 | 1.4:-23231433 | None:intergenic |
| CGAAATGATACATGGAGAGA+AGG | 0.533580 | 1.4:+23229013 | MS.gene88578:CDS |
| TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1.4:-23229842 | None:intergenic |
| TTACCTTCCTCTCCTAGAGA+AGG | 0.537384 | 1.4:-23228792 | None:intergenic |
| TTAGCAGAACATGGAGAGAA+TGG | 0.538483 | 1.4:+23229782 | MS.gene88578:CDS |
| ACTCAGGTGGAAATAAAACT+TGG | 0.542933 | 1.4:+23229687 | MS.gene88578:CDS |
| AAGCTACATAACAATCCCTA+TGG | 0.550057 | 1.4:-23230775 | None:intergenic |
| TGTGATCCTGATGATAAACT+TGG | 0.551457 | 1.4:+23229080 | MS.gene88578:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.552268 | 1.4:-23229896 | None:intergenic |
| GAGTATGGAGTCAACATTGA+GGG | 0.553863 | 1.4:+23229044 | MS.gene88578:CDS |
| ATGGAAAAGGCAAATTGGAT+AGG | 0.554570 | 1.4:-23230822 | None:intergenic |
| GACATGCAGCCTCTGCCATA+GGG | 0.557662 | 1.4:+23230760 | MS.gene88578:CDS |
| TAACCTTCTCTAGGAGAGGA+AGG | 0.564466 | 1.4:+23228789 | MS.gene88578:CDS |
| ATAAATTATCATCACTCAGG+TGG | 0.565750 | 1.4:+23229674 | MS.gene88578:CDS |
| ATACCATATTTAGAAGCCTC+GGG | 0.566769 | 1.4:-23228497 | None:intergenic |
| CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1.4:-23229834 | None:intergenic |
| CATACCATATTTAGAAGCCT+CGG | 0.570675 | 1.4:-23228498 | None:intergenic |
| CAAAAGCAAACTCGAAGTCA+TGG | 0.572919 | 1.4:+23230616 | MS.gene88578:CDS |
| TACTTCTCCATCAGTGATGA+GGG | 0.579966 | 1.4:+23231402 | MS.gene88578:CDS |
| GGTGGAAATAAAACTTGGTA+CGG | 0.583755 | 1.4:+23229692 | MS.gene88578:CDS |
| ATTTGAGGCTATCGCAAACA+AGG | 0.584174 | 1.4:+23228923 | MS.gene88578:CDS |
| CATAACAATCCCTATGGCAG+AGG | 0.587190 | 1.4:-23230769 | None:intergenic |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.4:+23229929 | MS.gene88578:CDS |
| GAAATGATACATGGAGAGAA+GGG | 0.589829 | 1.4:+23229014 | MS.gene88578:CDS |
| TCTACAGAAAATTGCTCCCG+AGG | 0.589922 | 1.4:+23228481 | MS.gene88578:CDS |
| AAGAACTGTCAACTCTGTAA+GGG | 0.595848 | 1.4:+23231285 | MS.gene88578:CDS |
| AGTATAAATTATCATCACTC+AGG | 0.598943 | 1.4:+23229671 | MS.gene88578:intron |
| CTTGTTACAACATGATGTGC+CGG | 0.599827 | 1.4:+23229853 | MS.gene88578:CDS |
| ATACTTCTCCATCAGTGATG+AGG | 0.601559 | 1.4:+23231401 | MS.gene88578:CDS |
| GGTTTCCAAATGGAATGAGA+AGG | 0.606380 | 1.4:+23228760 | MS.gene88578:CDS |
| ATGCCAGAAAGACTGTAGAA+TGG | 0.611170 | 1.4:-23230651 | None:intergenic |
| AGCATCTCAATGTAAAGCAT+AGG | 0.611839 | 1.4:-23229518 | None:intergenic |
| ATAATAACCTTCTCTAGGAG+AGG | 0.616579 | 1.4:+23228785 | MS.gene88578:CDS |
| TAAACTGAAAACAAGAGTCA+CGG | 0.629474 | 1.4:+23231318 | MS.gene88578:CDS |
| AAAAGAATCAGAAGATGACA+AGG | 0.635509 | 1.4:+23231362 | MS.gene88578:CDS |
| CCGTTGCGTTTAGTTGACAG+AGG | 0.635990 | 1.4:+23229354 | MS.gene88578:CDS |
| AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1.4:-23229915 | None:intergenic |
| TGAGTATGGAGTCAACATTG+AGG | 0.665976 | 1.4:+23229043 | MS.gene88578:CDS |
| CCTCTGTCAACTAAACGCAA+CGG | 0.668558 | 1.4:-23229354 | None:intergenic |
| ACTAAACGCAACGGAGACTG+CGG | 0.678157 | 1.4:-23229345 | None:intergenic |
| GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1.4:-23229841 | None:intergenic |
| TGATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1.4:+23229865 | MS.gene88578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTATTTTTTCATTATTT+TGG | - | chr1.4:23228856-23228875 | None:intergenic | 10.0% |
| !!! | ATCTGATTAATTTTTAATTT+TGG | + | chr1.4:23231211-23231230 | MS.gene88578:intron | 10.0% |
| !!! | TTTCATTTTATTTTAGAATT+TGG | + | chr1.4:23229314-23229333 | MS.gene88578:intron | 10.0% |
| !! | AATATGTTAATAGAGAAAAA+TGG | - | chr1.4:23229157-23229176 | None:intergenic | 15.0% |
| !! | AATGAAAAAATAAACTACTT+TGG | + | chr1.4:23228860-23228879 | MS.gene88578:intron | 15.0% |
| !! | TTTATTCTTGATAGATAAAT+TGG | + | chr1.4:23230890-23230909 | MS.gene88578:intron | 15.0% |
| !!! | ATGTTTTCTCAAATTATAAA+GGG | - | chr1.4:23231443-23231462 | None:intergenic | 15.0% |
| !!! | TTAGTATATGTTTTTTTTTC+AGG | + | chr1.4:23228632-23228651 | MS.gene88578:intron | 15.0% |
| !! | AATTATCAAATAGACTAATG+AGG | - | chr1.4:23230855-23230874 | None:intergenic | 20.0% |
| !! | ATTTACATATCAAGAATTTG+AGG | + | chr1.4:23228908-23228927 | MS.gene88578:CDS | 20.0% |
| !! | TTACTTGTTTCAATATTCTT+CGG | + | chr1.4:23229263-23229282 | MS.gene88578:intron | 20.0% |
| !!! | ACATAAGTATTTGAAATATC+AGG | - | chr1.4:23230333-23230352 | None:intergenic | 20.0% |
| !!! | CATGTTTTCTCAAATTATAA+AGG | - | chr1.4:23231444-23231463 | None:intergenic | 20.0% |
| !!! | TTCTTGATATGTAAATTTTC+TGG | - | chr1.4:23228904-23228923 | None:intergenic | 20.0% |
| !!! | TTGAAGATTTTTTGAATCAT+TGG | - | chr1.4:23229207-23229226 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTGTTGAGTTT+AGG | + | chr1.4:23230425-23230444 | MS.gene88578:intron | 20.0% |
| ! | AAAAAAATCTTAGCAGAACA+TGG | + | chr1.4:23229773-23229792 | MS.gene88578:CDS | 25.0% |
| ! | AGTATAAATTATCATCACTC+AGG | + | chr1.4:23229671-23229690 | MS.gene88578:intron | 25.0% |
| ! | CAAATCGAGTAAATTTGATT+TGG | + | chr1.4:23228376-23228395 | MS.gene88578:CDS | 25.0% |
| ! | CATGTCATTCTTCTTAAAAA+CGG | - | chr1.4:23230975-23230994 | None:intergenic | 25.0% |
| ! | GATAAAAAATCATAAACGCT+AGG | - | chr1.4:23228559-23228578 | None:intergenic | 25.0% |
| ! | TGATTTAGTCATGTTTATGT+TGG | + | chr1.4:23230019-23230038 | MS.gene88578:intron | 25.0% |
| ! | TGTCTTAATGAAAGAGAAAA+AGG | + | chr1.4:23228703-23228722 | MS.gene88578:CDS | 25.0% |
| !! | AATAACTTTTAATCCAGACT+AGG | - | chr1.4:23229408-23229427 | None:intergenic | 25.0% |
| !! | ATTTTCTGTAGATAAACCAA+AGG | - | chr1.4:23228473-23228492 | None:intergenic | 25.0% |
| !! | TAATTGAAAGGTATGATTCA+AGG | + | chr1.4:23230084-23230103 | MS.gene88578:intron | 25.0% |
| !! | TTTACATTTTGCACTAGATA+GGG | - | chr1.4:23230390-23230409 | None:intergenic | 25.0% |
| !! | TTTTACCTGTTCAAAACTTT+TGG | - | chr1.4:23231017-23231036 | None:intergenic | 25.0% |
| !! | TTTTGAACTGCAAAATCTAT+TGG | - | chr1.4:23228955-23228974 | None:intergenic | 25.0% |
| !!! | TAGATATTGAAAAAGCGTTT+TGG | + | chr1.4:23228988-23229007 | MS.gene88578:CDS | 25.0% |
| !!! | TTGATTTGGATGATCTAAAT+TGG | + | chr1.4:23228390-23228409 | MS.gene88578:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.4:23229814-23229833 | None:intergenic | 25.0% |
| !!! | TTTTATTTTAGAATTTGGCG+CGG | + | chr1.4:23229319-23229338 | MS.gene88578:intron | 25.0% |
| AAAAGAATCAGAAGATGACA+AGG | + | chr1.4:23231362-23231381 | MS.gene88578:CDS | 30.0% | |
| AAAATCCTAGGCTTGAAAAA+TGG | + | chr1.4:23230150-23230169 | MS.gene88578:intron | 30.0% | |
| AAACAATTGTACAACCTCTT+AGG | + | chr1.4:23228738-23228757 | MS.gene88578:CDS | 30.0% | |
| AACAATTGTACAACCTCTTA+GGG | + | chr1.4:23228739-23228758 | MS.gene88578:CDS | 30.0% | |
| AACGAGCAAATTCAATTTGA+AGG | + | chr1.4:23229103-23229122 | MS.gene88578:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+AGG | - | chr1.4:23229923-23229942 | None:intergenic | 30.0% | |
| ACAAGTAATCTGAAAATCCT+AGG | + | chr1.4:23230138-23230157 | MS.gene88578:intron | 30.0% | |
| ACTGAAAGCAGAATGATAAT+CGG | + | chr1.4:23231242-23231261 | MS.gene88578:intron | 30.0% | |
| ACTTATGTTGCATACTTGTT+TGG | + | chr1.4:23230345-23230364 | MS.gene88578:intron | 30.0% | |
| AGATCGCTTGAATAATTGAA+AGG | + | chr1.4:23230072-23230091 | MS.gene88578:intron | 30.0% | |
| AGCATGATATGAATTAGGAA+AGG | - | chr1.4:23229918-23229937 | None:intergenic | 30.0% | |
| AGCTCTTCAAATACATCATT+AGG | + | chr1.4:23230731-23230750 | MS.gene88578:CDS | 30.0% | |
| AGGATATAATAACCTTCTCT+AGG | + | chr1.4:23228780-23228799 | MS.gene88578:CDS | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.4:23230545-23230564 | None:intergenic | 30.0% | |
| ATAAATTATCATCACTCAGG+TGG | + | chr1.4:23229674-23229693 | MS.gene88578:CDS | 30.0% | |
| CTCTATATGCACAAACTATT+AGG | - | chr1.4:23230272-23230291 | None:intergenic | 30.0% | |
| GAACAGGCAATATTTGATTA+TGG | - | chr1.4:23230213-23230232 | None:intergenic | 30.0% | |
| GTCCAAAAGTAAACAGATTA+CGG | - | chr1.4:23230237-23230256 | None:intergenic | 30.0% | |
| TAAACTGAAAACAAGAGTCA+CGG | + | chr1.4:23231318-23231337 | MS.gene88578:CDS | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1.4:23229564-23229583 | MS.gene88578:CDS | 30.0% | |
| TATATCCTTCTCATTCCATT+TGG | - | chr1.4:23228768-23228787 | None:intergenic | 30.0% | |
| TCAAGGTTAATCTTGTAAAC+TGG | + | chr1.4:23230101-23230120 | MS.gene88578:intron | 30.0% | |
| TCATGTTGTAACAAGACATT+AGG | - | chr1.4:23229848-23229867 | None:intergenic | 30.0% | |
| TCTAGTGCAAAATGTAAAGA+TGG | + | chr1.4:23230392-23230411 | MS.gene88578:intron | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.4:23230554-23230573 | None:intergenic | 30.0% | |
| TTCATTAAGACAAAATCAGC+AGG | - | chr1.4:23228695-23228714 | None:intergenic | 30.0% | |
| TTTCCTAATTCATATCATGC+TGG | + | chr1.4:23229917-23229936 | MS.gene88578:CDS | 30.0% | |
| ! | CTTTACATTTTGCACTAGAT+AGG | - | chr1.4:23230391-23230410 | None:intergenic | 30.0% |
| ! | GACAGTCTTTTCAAATTGAA+AGG | - | chr1.4:23229735-23229754 | None:intergenic | 30.0% |
| ! | TGCTATTTAGTATGTTTGCA+TGG | + | chr1.4:23229537-23229556 | MS.gene88578:CDS | 30.0% |
| ! | TTTGTAACTTCTGACTTTTG+AGG | - | chr1.4:23230600-23230619 | None:intergenic | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.4:23230468-23230487 | MS.gene88578:CDS | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.4:23230437-23230456 | MS.gene88578:intron | 30.0% |
| AAGAACTGTCAACTCTGTAA+GGG | + | chr1.4:23231285-23231304 | MS.gene88578:CDS | 35.0% | |
| AAGCTACATAACAATCCCTA+TGG | - | chr1.4:23230778-23230797 | None:intergenic | 35.0% | |
| ACAAGAATTTGAGCATCCTT+TGG | + | chr1.4:23228454-23228473 | MS.gene88578:CDS | 35.0% | |
| ACCAAAACAGAAGATATTGC+AGG | - | chr1.4:23231490-23231509 | None:intergenic | 35.0% | |
| ACTCAGGTGGAAATAAAACT+TGG | + | chr1.4:23229687-23229706 | MS.gene88578:CDS | 35.0% | |
| AGCATCTCAATGTAAAGCAT+AGG | - | chr1.4:23229521-23229540 | None:intergenic | 35.0% | |
| ATACCATATTTAGAAGCCTC+GGG | - | chr1.4:23228500-23228519 | None:intergenic | 35.0% | |
| ATGGAAAAGGCAAATTGGAT+AGG | - | chr1.4:23230825-23230844 | None:intergenic | 35.0% | |
| CAAATTCTTGTTCTGATGGA+TGG | - | chr1.4:23228445-23228464 | None:intergenic | 35.0% | |
| CATACCATATTTAGAAGCCT+CGG | - | chr1.4:23228501-23228520 | None:intergenic | 35.0% | |
| CTCAAATTATAAAGGGTTCG+CGG | - | chr1.4:23231436-23231455 | None:intergenic | 35.0% | |
| CTCATAGTTTACGGATAAGT+AGG | + | chr1.4:23230048-23230067 | MS.gene88578:intron | 35.0% | |
| GAAATGATACATGGAGAGAA+GGG | + | chr1.4:23229014-23229033 | MS.gene88578:CDS | 35.0% | |
| GACGCATTCAATCATACTAT+AGG | - | chr1.4:23231077-23231096 | None:intergenic | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.4:23230538-23230557 | MS.gene88578:CDS | 35.0% | |
| GGTGGAAATAAAACTTGGTA+CGG | + | chr1.4:23229692-23229711 | MS.gene88578:CDS | 35.0% | |
| GTTGTAACAAGACATTAGGA+GGG | - | chr1.4:23229844-23229863 | None:intergenic | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.4:23229929-23229948 | MS.gene88578:CDS | 35.0% | |
| TGCTCAAATTCTTGTTCTGA+TGG | - | chr1.4:23228449-23228468 | None:intergenic | 35.0% | |
| TGGCTATTGCTCATAGTTTA+CGG | + | chr1.4:23230039-23230058 | MS.gene88578:intron | 35.0% | |
| TGTGATCCTGATGATAAACT+TGG | + | chr1.4:23229080-23229099 | MS.gene88578:CDS | 35.0% | |
| TGTTGTAACAAGACATTAGG+AGG | - | chr1.4:23229845-23229864 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.4:23230830-23230849 | None:intergenic | 35.0% | |
| ! | AGACTAATGAGGTTTTACCA+TGG | - | chr1.4:23230844-23230863 | None:intergenic | 35.0% |
| ! | ATAATAACCTTCTCTAGGAG+AGG | + | chr1.4:23228785-23228804 | MS.gene88578:CDS | 35.0% |
| ! | ATGAGGTTTTACCATGGAAA+AGG | - | chr1.4:23230838-23230857 | None:intergenic | 35.0% |
| ! | ATTTTGCACTAGATAGGGAT+AGG | - | chr1.4:23230385-23230404 | None:intergenic | 35.0% |
| ! | CTCCGTAATCTGTTTACTTT+TGG | + | chr1.4:23230232-23230251 | MS.gene88578:intron | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.4:23230461-23230480 | MS.gene88578:CDS | 35.0% |
| ! | TATCCAATTTGCCTTTTCCA+TGG | + | chr1.4:23230824-23230843 | MS.gene88578:CDS | 35.0% |
| ! | TCCTGCAATATCTTCTGTTT+TGG | + | chr1.4:23231486-23231505 | MS.gene88578:CDS | 35.0% |
| ! | TGCCAAAAACTTGCTTATGT+GGG | + | chr1.4:23230939-23230958 | MS.gene88578:CDS | 35.0% |
| !! | AATCTGTTTACTTTTGGACC+AGG | + | chr1.4:23230238-23230257 | MS.gene88578:intron | 35.0% |
| !! | ATCTGTTTACTTTTGGACCA+GGG | + | chr1.4:23230239-23230258 | MS.gene88578:intron | 35.0% |
| !! | ATTGGTGATTGGTTTCCATT+TGG | + | chr1.4:23230479-23230498 | MS.gene88578:CDS | 35.0% |
| !! | TTGGTGATTGGTTTCCATTT+GGG | + | chr1.4:23230480-23230499 | MS.gene88578:CDS | 35.0% |
| !!! | TTTTGGCTCGAAATGATACA+TGG | + | chr1.4:23229005-23229024 | MS.gene88578:CDS | 35.0% |
| AACCTCTTAGGGTTTCCAAA+TGG | + | chr1.4:23228750-23228769 | MS.gene88578:CDS | 40.0% | |
| AATTGAAAGGCTGCAGAACT+AGG | - | chr1.4:23229722-23229741 | None:intergenic | 40.0% | |
| AGTTTGTGCATATAGAGACG+AGG | + | chr1.4:23230275-23230294 | MS.gene88578:intron | 40.0% | |
| ATACTTCTCCATCAGTGATG+AGG | + | chr1.4:23231401-23231420 | MS.gene88578:CDS | 40.0% | |
| ATGCCAGAAAGACTGTAGAA+TGG | - | chr1.4:23230654-23230673 | None:intergenic | 40.0% | |
| CAAAAGCAAACTCGAAGTCA+TGG | + | chr1.4:23230616-23230635 | MS.gene88578:CDS | 40.0% | |
| CCTAGGCTTGAAAAATGGAA+AGG | + | chr1.4:23230155-23230174 | MS.gene88578:intron | 40.0% | |
| CGAAATGATACATGGAGAGA+AGG | + | chr1.4:23229013-23229032 | MS.gene88578:CDS | 40.0% | |
| CTCGTTCCAAGTTTATCATC+AGG | - | chr1.4:23229089-23229108 | None:intergenic | 40.0% | |
| CTTGTTACAACATGATGTGC+CGG | + | chr1.4:23229853-23229872 | MS.gene88578:CDS | 40.0% | |
| GAAGAACTGTCAACTCTGTA+AGG | + | chr1.4:23231284-23231303 | MS.gene88578:CDS | 40.0% | |
| GACAAAATCAGCAGGATTAG+TGG | - | chr1.4:23228687-23228706 | None:intergenic | 40.0% | |
| GAGTATGGAGTCAACATTGA+GGG | + | chr1.4:23229044-23229063 | MS.gene88578:CDS | 40.0% | |
| GGTTTCCAAATGGAATGAGA+AGG | + | chr1.4:23228760-23228779 | MS.gene88578:CDS | 40.0% | |
| GTAAACAGATTACGGAGAAC+AGG | - | chr1.4:23230229-23230248 | None:intergenic | 40.0% | |
| TACTTCTCCATCAGTGATGA+GGG | + | chr1.4:23231402-23231421 | MS.gene88578:CDS | 40.0% | |
| TCCAAAAATGGCTTCCTTAC+AGG | - | chr1.4:23229384-23229403 | None:intergenic | 40.0% | |
| TCCAGACTAGGTTCCAAAAA+TGG | - | chr1.4:23229396-23229415 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAACATTG+AGG | + | chr1.4:23229043-23229062 | MS.gene88578:CDS | 40.0% | |
| TTAGCAGAACATGGAGAGAA+TGG | + | chr1.4:23229782-23229801 | MS.gene88578:CDS | 40.0% | |
| TTCCATTTGGAAACCCTAAG+AGG | - | chr1.4:23228755-23228774 | None:intergenic | 40.0% | |
| TTGACAGAGGAATTCCTGTA+AGG | + | chr1.4:23229367-23229386 | MS.gene88578:intron | 40.0% | |
| ! | ATTTGAGGCTATCGCAAACA+AGG | + | chr1.4:23228923-23228942 | MS.gene88578:CDS | 40.0% |
| ! | CCAAAAACTTGCTTATGTGG+GGG | + | chr1.4:23230941-23230960 | MS.gene88578:CDS | 40.0% |
| ! | GCCAAAAACTTGCTTATGTG+GGG | + | chr1.4:23230940-23230959 | MS.gene88578:CDS | 40.0% |
| ! | GTGCCAAAAACTTGCTTATG+TGG | + | chr1.4:23230938-23230957 | MS.gene88578:CDS | 40.0% |
| ! | TGTTCTGATGGATGGTAAAC+TGG | - | chr1.4:23228437-23228456 | None:intergenic | 40.0% |
| !! | TCCTGTAAGGAAGCCATTTT+TGG | + | chr1.4:23229380-23229399 | MS.gene88578:intron | 40.0% |
| !! | TGGTGATTGGTTTCCATTTG+GGG | + | chr1.4:23230481-23230500 | MS.gene88578:CDS | 40.0% |
| !!! | CCTTTCCATTTTTCAAGCCT+AGG | - | chr1.4:23230158-23230177 | None:intergenic | 40.0% |
| !!! | TGCTGCCAAAAGTTTTGAAC+AGG | + | chr1.4:23231009-23231028 | MS.gene88578:CDS | 40.0% |
| AACTATTAGGACTTCAGCCC+TGG | - | chr1.4:23230259-23230278 | None:intergenic | 45.0% | |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1.4:23229899-23229918 | None:intergenic | 45.0% | |
| CAAGACATTAGGAGGGAACA+TGG | - | chr1.4:23229837-23229856 | None:intergenic | 45.0% | |
| CATAACAATCCCTATGGCAG+AGG | - | chr1.4:23230772-23230791 | None:intergenic | 45.0% | |
| CCTCTGTCAACTAAACGCAA+CGG | - | chr1.4:23229357-23229376 | None:intergenic | 45.0% | |
| GAGAAGGGAACAGTTGAGTA+TGG | + | chr1.4:23229029-23229048 | MS.gene88578:CDS | 45.0% | |
| GGATGGTAAACTGGACATTC+TGG | - | chr1.4:23228428-23228447 | None:intergenic | 45.0% | |
| TCTACAGAAAATTGCTCCCG+AGG | + | chr1.4:23228481-23228500 | MS.gene88578:CDS | 45.0% | |
| TTACCTTCCTCTCCTAGAGA+AGG | - | chr1.4:23228795-23228814 | None:intergenic | 45.0% | |
| ! | ATAAAGGGTTCGCGGTCTTT+TGG | - | chr1.4:23231428-23231447 | None:intergenic | 45.0% |
| ! | CCCCCACATAAGCAAGTTTT+TGG | - | chr1.4:23230944-23230963 | None:intergenic | 45.0% |
| ! | GCAGGATTAGTGGCACTAAT+TGG | - | chr1.4:23228677-23228696 | None:intergenic | 45.0% |
| ! | GTGCCATTCTACAGTCTTTC+TGG | + | chr1.4:23230648-23230667 | MS.gene88578:CDS | 45.0% |
| ! | TAACCTTCTCTAGGAGAGGA+AGG | + | chr1.4:23228789-23228808 | MS.gene88578:CDS | 45.0% |
| ! | TTACGCATGCGCAGAGTTTT+AGG | - | chr1.4:23228596-23228615 | None:intergenic | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.4:23229875-23229894 | None:intergenic | 45.0% |
| !! | ACATGATGTGCCGGTTTACA+AGG | + | chr1.4:23229862-23229881 | MS.gene88578:CDS | 45.0% |
| !!! | GCCATTTTTGGAACCTAGTC+TGG | + | chr1.4:23229392-23229411 | MS.gene88578:intron | 45.0% |
| !!! | AATTTTCTTTTTAAAATTTT+AGG | + | chr1.4:23229484-23229503 | MS.gene88578:intron | 5.0% |
| !!! | ATTTTCTTTTTAAAATTTTA+GGG | + | chr1.4:23229485-23229504 | MS.gene88578:intron | 5.0% |
| ACTAAACGCAACGGAGACTG+CGG | - | chr1.4:23229348-23229367 | None:intergenic | 50.0% | |
| CCGTTGCGTTTAGTTGACAG+AGG | + | chr1.4:23229354-23229373 | MS.gene88578:CDS | 50.0% | |
| CTTCAGCCACTAGGCACAAT+TGG | + | chr1.4:23230180-23230199 | MS.gene88578:intron | 50.0% | |
| GCTCCCGAGGCTTCTAAATA+TGG | + | chr1.4:23228494-23228513 | MS.gene88578:CDS | 50.0% | |
| GTTCGACCAATTGTGCCTAG+TGG | - | chr1.4:23230189-23230208 | None:intergenic | 50.0% | |
| TTTCTTGCTGCAGCCCCAAA+TGG | - | chr1.4:23230497-23230516 | None:intergenic | 50.0% | |
| ! | CTTTTGGCCCTCATCACTGA+TGG | - | chr1.4:23231412-23231431 | None:intergenic | 50.0% |
| ! | TTGGCAGCATCTTCGAGTTC+TGG | - | chr1.4:23230998-23231017 | None:intergenic | 50.0% |
| !! | GGAAAGGTACTTCAGCCACT+AGG | + | chr1.4:23230171-23230190 | MS.gene88578:intron | 50.0% |
| !! | TGATGTGCCGGTTTACAAGG+CGG | + | chr1.4:23229865-23229884 | MS.gene88578:CDS | 50.0% |
| GACATGCAGCCTCTGCCATA+GGG | + | chr1.4:23230760-23230779 | MS.gene88578:CDS | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.4:23229878-23229897 | MS.gene88578:CDS | 55.0% | |
| TGACATGCAGCCTCTGCCAT+AGG | + | chr1.4:23230759-23230778 | MS.gene88578:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 23228350 | 23231531 | 23228350 | ID=MS.gene88578 |
| chr1.4 | mRNA | 23228350 | 23231531 | 23228350 | ID=MS.gene88578.t1;Parent=MS.gene88578 |
| chr1.4 | exon | 23228350 | 23228515 | 23228350 | ID=MS.gene88578.t1.exon1;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23228350 | 23228515 | 23228350 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23228654 | 23228810 | 23228654 | ID=MS.gene88578.t1.exon2;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23228654 | 23228810 | 23228654 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23228905 | 23229124 | 23228905 | ID=MS.gene88578.t1.exon3;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23228905 | 23229124 | 23228905 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23229330 | 23229383 | 23229330 | ID=MS.gene88578.t1.exon4;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23229330 | 23229383 | 23229330 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23229506 | 23229585 | 23229506 | ID=MS.gene88578.t1.exon5;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23229506 | 23229585 | 23229506 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23229673 | 23229950 | 23229673 | ID=MS.gene88578.t1.exon6;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23229673 | 23229950 | 23229673 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23230447 | 23230845 | 23230447 | ID=MS.gene88578.t1.exon7;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23230447 | 23230845 | 23230447 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23230933 | 23231093 | 23230933 | ID=MS.gene88578.t1.exon8;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23230933 | 23231093 | 23230933 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| chr1.4 | exon | 23231253 | 23231531 | 23231253 | ID=MS.gene88578.t1.exon9;Parent=MS.gene88578.t1 |
| chr1.4 | CDS | 23231253 | 23231531 | 23231253 | ID=cds.MS.gene88578.t1;Parent=MS.gene88578.t1 |
| Gene Sequence |
| Protein sequence |
