Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88580.t1 | RHN78372.1 | 84 | 580 | 75 | 1 | 1 | 580 | 1 | 562 | 3.20E-281 | 977.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88580.t1 | Q336N8 | 52.6 | 470 | 212 | 5 | 6 | 469 | 101 | 565 | 4.2e-136 | 486.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88580.t1 | A0A396JLW8 | 84.0 | 580 | 75 | 1 | 1 | 580 | 1 | 562 | 2.3e-281 | 977.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88580.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88580.t1 | MTR_1g038370 | 89.310 | 580 | 42 | 1 | 1 | 580 | 1 | 560 | 0.0 | 1073 |
| MS.gene88580.t1 | MTR_1g038400 | 77.448 | 572 | 101 | 3 | 2 | 571 | 22 | 567 | 0.0 | 888 |
| MS.gene88580.t1 | MTR_5g029370 | 52.610 | 498 | 229 | 3 | 2 | 493 | 83 | 579 | 0.0 | 545 |
| MS.gene88580.t1 | MTR_5g029370 | 52.610 | 498 | 229 | 3 | 2 | 493 | 83 | 579 | 0.0 | 545 |
| MS.gene88580.t1 | MTR_7g407000 | 81.250 | 144 | 9 | 2 | 181 | 323 | 28 | 154 | 3.12e-75 | 236 |
| MS.gene88580.t1 | MTR_3g075210 | 37.778 | 360 | 188 | 8 | 8 | 346 | 18 | 362 | 1.30e-66 | 236 |
| MS.gene88580.t1 | MTR_8g089260 | 31.455 | 550 | 290 | 15 | 4 | 476 | 29 | 568 | 4.53e-58 | 210 |
| MS.gene88580.t1 | MTR_1g078070 | 30.361 | 527 | 277 | 15 | 6 | 454 | 148 | 662 | 2.40e-54 | 199 |
| MS.gene88580.t1 | MTR_1g078070 | 30.508 | 531 | 271 | 16 | 6 | 454 | 148 | 662 | 4.16e-54 | 199 |
| MS.gene88580.t1 | MTR_5g010300 | 33.953 | 430 | 214 | 14 | 109 | 511 | 323 | 709 | 5.92e-53 | 196 |
| MS.gene88580.t1 | MTR_5g010300 | 33.953 | 430 | 214 | 14 | 109 | 511 | 323 | 709 | 6.82e-53 | 196 |
| MS.gene88580.t1 | MTR_5g010300 | 33.953 | 430 | 214 | 14 | 109 | 511 | 323 | 709 | 7.41e-53 | 195 |
| MS.gene88580.t1 | MTR_5g010300 | 37.176 | 347 | 173 | 11 | 109 | 428 | 323 | 651 | 7.60e-52 | 192 |
| MS.gene88580.t1 | MTR_1g094740 | 44.149 | 188 | 101 | 1 | 152 | 339 | 291 | 474 | 9.46e-51 | 189 |
| MS.gene88580.t1 | MTR_2g047130 | 33.578 | 408 | 231 | 14 | 134 | 511 | 232 | 629 | 1.08e-44 | 171 |
| MS.gene88580.t1 | MTR_2g047130 | 33.578 | 408 | 231 | 14 | 134 | 511 | 229 | 626 | 1.21e-44 | 170 |
| MS.gene88580.t1 | MTR_7g097070 | 31.132 | 318 | 189 | 11 | 156 | 455 | 338 | 643 | 1.23e-29 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88580.t1 | AT5G46910 | 54.832 | 476 | 210 | 5 | 7 | 479 | 102 | 575 | 0.0 | 541 |
| MS.gene88580.t1 | AT5G46910 | 54.832 | 476 | 210 | 5 | 7 | 479 | 102 | 575 | 0.0 | 539 |
| MS.gene88580.t1 | AT2G34880 | 31.707 | 533 | 282 | 14 | 7 | 470 | 60 | 579 | 1.55e-60 | 215 |
| MS.gene88580.t1 | AT3G48430 | 34.595 | 370 | 198 | 8 | 8 | 339 | 20 | 383 | 2.99e-59 | 214 |
| MS.gene88580.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 2.95e-57 | 206 |
| MS.gene88580.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 2.95e-57 | 206 |
| MS.gene88580.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 2.95e-57 | 206 |
| MS.gene88580.t1 | AT4G20400 | 27.259 | 642 | 355 | 18 | 4 | 562 | 52 | 664 | 3.59e-56 | 204 |
| MS.gene88580.t1 | AT1G63490 | 42.642 | 265 | 126 | 6 | 93 | 340 | 52 | 307 | 2.46e-55 | 202 |
| MS.gene88580.t1 | AT1G63490 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 3.78e-55 | 202 |
| MS.gene88580.t1 | AT1G63490 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 3.82e-55 | 202 |
| MS.gene88580.t1 | AT4G20400 | 27.460 | 630 | 345 | 18 | 16 | 562 | 7 | 607 | 2.48e-53 | 196 |
| MS.gene88580.t1 | AT5G04240 | 46.277 | 188 | 97 | 1 | 152 | 339 | 259 | 442 | 1.73e-51 | 191 |
| MS.gene88580.t1 | AT1G08620 | 34.006 | 347 | 196 | 8 | 117 | 439 | 313 | 650 | 6.83e-46 | 174 |
| MS.gene88580.t1 | AT1G08620 | 34.006 | 347 | 196 | 8 | 117 | 439 | 313 | 650 | 6.83e-46 | 174 |
| MS.gene88580.t1 | AT1G08620 | 34.006 | 347 | 196 | 8 | 117 | 439 | 313 | 650 | 6.83e-46 | 174 |
| MS.gene88580.t1 | AT1G08620 | 34.006 | 347 | 196 | 8 | 117 | 439 | 327 | 664 | 7.48e-46 | 174 |
| MS.gene88580.t1 | AT2G38950 | 25.629 | 636 | 356 | 21 | 2 | 550 | 102 | 707 | 3.44e-36 | 144 |
| MS.gene88580.t1 | AT1G63490 | 55.172 | 87 | 39 | 0 | 254 | 340 | 15 | 101 | 8.06e-25 | 110 |
Find 76 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAATTGTACAGCCTCTT+AGG | 0.195974 | 1.4:+23242100 | MS.gene88580:CDS |
| GCTCCCGAGGCTTCTAAATA+TGG | 0.220992 | 1.4:+23241581 | MS.gene88580:CDS |
| TGACATGCAGCCTCTGCTTT+AGG | 0.237204 | 1.4:+23244019 | MS.gene88580:CDS |
| TTCTTTACCGCAAAATCTAT+TGG | 0.253886 | 1.4:-23242312 | None:intergenic |
| AATCCAGCATGATATGAATT+TGG | 0.254423 | 1.4:-23243204 | None:intergenic |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1.4:+23242065 | MS.gene88580:CDS |
| GATGTATTCATTTATGTTAT+AGG | 0.277368 | 1.4:-23244343 | None:intergenic |
| TCCTGCAGTATCTTCCCTTT+TGG | 0.292966 | 1.4:+23244778 | MS.gene88580:CDS |
| GACATGCAGCCTCTGCTTTA+GGG | 0.297262 | 1.4:+23244020 | MS.gene88580:CDS |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.4:-23243805 | None:intergenic |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1.4:+23242389 | MS.gene88580:CDS |
| AGCTATTCAAATACATCATT+AGG | 0.343820 | 1.4:+23243991 | MS.gene88580:CDS |
| ATAAAGGACTCGTTGTCTTT+TGG | 0.343992 | 1.4:-23244717 | None:intergenic |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.4:-23243814 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1.4:-23244087 | None:intergenic |
| GCTCGATAAGATGTGTCTTC+AGG | 0.367073 | 1.4:-23243889 | None:intergenic |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1.4:+23242463 | MS.gene88580:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.4:+23243731 | MS.gene88580:CDS |
| CTCCTTTGCGTTTAGTTGAC+AGG | 0.388373 | 1.4:+23242670 | MS.gene88580:CDS |
| ACTGAAAGCAGAATAATAAC+TGG | 0.419321 | 1.4:+23244537 | MS.gene88580:intron |
| TTTGATTTGAAAACCCTAAG+AGG | 0.423006 | 1.4:-23242114 | None:intergenic |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1.4:+23242797 | MS.gene88580:CDS |
| TCAATTTGAAAAGACTGTCT+TGG | 0.425142 | 1.4:+23243020 | MS.gene88580:CDS |
| TGTTCTGATGGATAATAAGT+TGG | 0.426588 | 1.4:-23241521 | None:intergenic |
| CACAATTGTACAGCCTCTTA+GGG | 0.435355 | 1.4:+23242101 | MS.gene88580:CDS |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1.4:-23242446 | None:intergenic |
| TTGGTGATTGGTTTCCACTC+GGG | 0.449709 | 1.4:+23243743 | MS.gene88580:CDS |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.4:+23243724 | MS.gene88580:CDS |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.4:+23243801 | MS.gene88580:CDS |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1.4:-23241533 | None:intergenic |
| ATGAGGTCTTACCATGGAAA+AGG | 0.484485 | 1.4:-23244095 | None:intergenic |
| GTGCCACAAAATTGTTTATG+TGG | 0.488853 | 1.4:+23244207 | MS.gene88580:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1.4:+23242283 | MS.gene88580:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1.4:+23243201 | MS.gene88580:CDS |
| GACAACATACTGTATTTAAG+AGG | 0.498182 | 1.4:+23244232 | MS.gene88580:CDS |
| ACATAATGTGCCGGTTTACA+AGG | 0.500477 | 1.4:+23243146 | MS.gene88580:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1.4:-23242432 | None:intergenic |
| GAAATAATACATGGAGAGAA+AGG | 0.501914 | 1.4:+23242374 | MS.gene88580:CDS |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1.4:+23242976 | MS.gene88580:CDS |
| ATTGGTGATTGGTTTCCACT+CGG | 0.503752 | 1.4:+23243742 | MS.gene88580:CDS |
| TACAACTCCTCAAAAGATAG+AGG | 0.507371 | 1.4:+23243853 | MS.gene88580:CDS |
| TACAAGGCAGTGCAAAAGCC+AGG | 0.510034 | 1.4:+23243162 | MS.gene88580:CDS |
| AGAAGAACTGTTAGCTCGCT+AGG | 0.512570 | 1.4:+23244578 | MS.gene88580:CDS |
| AATTGAGAGAATGCAGAACT+AGG | 0.514524 | 1.4:-23243003 | None:intergenic |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1.4:+23242796 | MS.gene88580:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1.4:+23242440 | MS.gene88580:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.4:+23242821 | MS.gene88580:CDS |
| TGGTGATTGGTTTCCACTCG+GGG | 0.519820 | 1.4:+23243744 | MS.gene88580:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1.4:+23242848 | MS.gene88580:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1.4:-23242054 | None:intergenic |
| AAACCATATTTAGAAGCCTC+GGG | 0.525423 | 1.4:-23241584 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1.4:+23242971 | MS.gene88580:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1.4:-23243129 | None:intergenic |
| CAAACCATATTTAGAAGCCT+CGG | 0.546388 | 1.4:-23241585 | None:intergenic |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1.4:+23243137 | MS.gene88580:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.548617 | 1.4:-23243180 | None:intergenic |
| AACAAAATCTTCACAGAACA+TGG | 0.551615 | 1.4:+23243057 | MS.gene88580:CDS |
| TTTATATGACATCATTATCA+CGG | 0.560917 | 1.4:+23243944 | MS.gene88580:CDS |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1.4:-23243118 | None:intergenic |
| GCAGGATTAGAAGCAGCGAT+TGG | 0.572576 | 1.4:-23242036 | None:intergenic |
| TGCCACAAAATTGTTTATGT+GGG | 0.576308 | 1.4:+23244208 | MS.gene88580:CDS |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.4:+23243213 | MS.gene88580:CDS |
| TTCTGGCACGAAATAATACA+TGG | 0.588933 | 1.4:+23242365 | MS.gene88580:CDS |
| GCCAAAAGGGAAGATACTGC+AGG | 0.591239 | 1.4:-23244779 | None:intergenic |
| TTCCTGTCAACTAAACGCAA+AGG | 0.593613 | 1.4:-23242672 | None:intergenic |
| TCTGCAGAAAATTGCTCCCG+AGG | 0.609917 | 1.4:+23241568 | MS.gene88580:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.4:-23242802 | None:intergenic |
| TCGCTAGCTGCAGCCCCGAG+TGG | 0.621053 | 1.4:-23243757 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1.4:+23242955 | MS.gene88580:intron |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1.4:-23243199 | None:intergenic |
| GCAGAATAATAACTGGCATG+AGG | 0.639560 | 1.4:+23244544 | MS.gene88580:intron |
| TGAGAAAACATGAATCAGAA+CGG | 0.651996 | 1.4:+23244744 | MS.gene88580:CDS |
| CATAACAATCCCTAAAGCAG+AGG | 0.654524 | 1.4:-23244029 | None:intergenic |
| TGAATACATCAAAGAACACA+AGG | 0.678690 | 1.4:+23244356 | MS.gene88580:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1.4:+23242403 | MS.gene88580:CDS |
| ACTAAACGCAAAGGAGACTG+TGG | 0.706143 | 1.4:-23242663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTTAAAATTATA+GGG | + | chr1.4:23242769-23242788 | MS.gene88580:intron | 0.0% |
| !!! | TTAATTTTATTTAAAATTAT+AGG | + | chr1.4:23242768-23242787 | MS.gene88580:intron | 0.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1.4:23241994-23242013 | MS.gene88580:intron | 15.0% |
| !!! | AAATTCTAAAATCAAATGAA+AGG | - | chr1.4:23242633-23242652 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTAATTCAGATT+AGG | - | chr1.4:23242726-23242745 | None:intergenic | 15.0% |
| !! | AATAGTCAAATAGAATAATG+AGG | - | chr1.4:23244115-23244134 | None:intergenic | 20.0% |
| !! | AGAATGATGTAATCTAATAT+TGG | + | chr1.4:23241897-23241916 | MS.gene88580:intron | 20.0% |
| !! | GATGTATTCATTTATGTTAT+AGG | - | chr1.4:23244346-23244365 | None:intergenic | 20.0% |
| !! | TGATCAAAAATTAACTAACA+TGG | + | chr1.4:23242219-23242238 | MS.gene88580:intron | 20.0% |
| !! | TTAAGATATGCTTATATATC+AGG | - | chr1.4:23242913-23242932 | None:intergenic | 20.0% |
| !! | TTTATATGACATCATTATCA+CGG | + | chr1.4:23243944-23243963 | MS.gene88580:CDS | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1.4:23243598-23243617 | None:intergenic | 20.0% |
| !!! | TGGATATTGGTTATATTTTA+CGG | + | chr1.4:23243276-23243295 | MS.gene88580:intron | 20.0% |
| !!! | TTTGATTTTAGAATTTGAAG+CGG | + | chr1.4:23242637-23242656 | MS.gene88580:intron | 20.0% |
| ! | AAAGTGAAACTCGAAAATAT+AGG | + | chr1.4:23241838-23241857 | MS.gene88580:intron | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1.4:23242463-23242482 | MS.gene88580:CDS | 25.0% |
| ! | AGCTATTCAAATACATCATT+AGG | + | chr1.4:23243991-23244010 | MS.gene88580:CDS | 25.0% |
| ! | AGTAGAATTCTTACTATACT+TGG | - | chr1.4:23241711-23241730 | None:intergenic | 25.0% |
| ! | AGTCTATTAATCTTTACTTG+TGG | + | chr1.4:23242568-23242587 | MS.gene88580:intron | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr1.4:23243398-23243417 | None:intergenic | 25.0% |
| ! | GATTACTTGTGTAAATACTA+CGG | - | chr1.4:23243369-23243388 | None:intergenic | 25.0% |
| ! | TAAAAAAAACCCTAGAAACA+CGG | - | chr1.4:23241646-23241665 | None:intergenic | 25.0% |
| !! | AGGTTTTACTAAAATTACAG+TGG | + | chr1.4:23241858-23241877 | MS.gene88580:intron | 25.0% |
| !! | ATGGATAAACTTGCTTATTA+TGG | + | chr1.4:23244169-23244188 | MS.gene88580:intron | 25.0% |
| !! | ATTATGTTTCTGATGGATAT+TGG | + | chr1.4:23243263-23243282 | MS.gene88580:intron | 25.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1.4:23241560-23241579 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTGTTGAGTTT+AGG | + | chr1.4:23243688-23243707 | MS.gene88580:intron | 25.0% |
| !! | CATGTTTTCTCAAGTTATAA+AGG | - | chr1.4:23244736-23244755 | None:intergenic | 25.0% |
| !! | GTTATATTTTACGGATAAGT+AGG | + | chr1.4:23243285-23243304 | MS.gene88580:intron | 25.0% |
| !! | TGAATAATAGAAAGGTACAT+AGG | + | chr1.4:23243317-23243336 | MS.gene88580:intron | 25.0% |
| !!! | ACTATTTTAATGAAGTTCAG+AGG | - | chr1.4:23244425-23244444 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | + | chr1.4:23242151-23242170 | MS.gene88580:CDS | 25.0% |
| !!! | TAATTTGCTTGTGTTATTGA+TGG | + | chr1.4:23244150-23244169 | MS.gene88580:intron | 25.0% |
| !!! | TAGATATTGAAAAAGTGTTC+TGG | + | chr1.4:23242348-23242367 | MS.gene88580:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.4:23243098-23243117 | None:intergenic | 25.0% |
| AAAGAAAGTTGAGGGATAAA+AGG | - | chr1.4:23241745-23241764 | None:intergenic | 30.0% | |
| AACAAAATCTTCACAGAACA+TGG | + | chr1.4:23243057-23243076 | MS.gene88580:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | - | chr1.4:23243207-23243226 | None:intergenic | 30.0% | |
| ACTGAAAGCAGAATAATAAC+TGG | + | chr1.4:23244537-23244556 | MS.gene88580:intron | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1.4:23243202-23243221 | None:intergenic | 30.0% | |
| AGGTCGATTGAATAATAGAA+AGG | + | chr1.4:23243309-23243328 | MS.gene88580:intron | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.4:23243808-23243827 | None:intergenic | 30.0% | |
| CACGTTCATGTTTAGATTAA+CGG | + | chr1.4:23241792-23241811 | MS.gene88580:intron | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr1.4:23243396-23243415 | MS.gene88580:intron | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr1.4:23243399-23243418 | None:intergenic | 30.0% | |
| GAAATAATACATGGAGAGAA+AGG | + | chr1.4:23242374-23242393 | MS.gene88580:CDS | 30.0% | |
| GACAACATACTGTATTTAAG+AGG | + | chr1.4:23244232-23244251 | MS.gene88580:CDS | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | - | chr1.4:23242702-23242721 | None:intergenic | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1.4:23242848-23242867 | MS.gene88580:CDS | 30.0% | |
| TCAATTTGAAAAGACTGTCT+TGG | + | chr1.4:23243020-23243039 | MS.gene88580:CDS | 30.0% | |
| TGAATACATCAAAGAACACA+AGG | + | chr1.4:23244356-23244375 | MS.gene88580:CDS | 30.0% | |
| TGAGAAAACATGAATCAGAA+CGG | + | chr1.4:23244744-23244763 | MS.gene88580:CDS | 30.0% | |
| TGCCACAAAATTGTTTATGT+GGG | + | chr1.4:23244208-23244227 | MS.gene88580:CDS | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.4:23243817-23243836 | None:intergenic | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1.4:23243132-23243151 | None:intergenic | 30.0% | |
| TTCTTTACCGCAAAATCTAT+TGG | - | chr1.4:23242315-23242334 | None:intergenic | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1.4:23243201-23243220 | MS.gene88580:CDS | 30.0% | |
| ! | CAAAAGTTTTCAACTGGAAA+AGG | + | chr1.4:23244284-23244303 | MS.gene88580:CDS | 30.0% |
| ! | CTTTTCCAGTTGAAAACTTT+TGG | - | chr1.4:23244286-23244305 | None:intergenic | 30.0% |
| ! | GGTTTTCAAATCAAATGAGA+TGG | + | chr1.4:23242122-23242141 | MS.gene88580:CDS | 30.0% |
| ! | TGTTCTGATGGATAATAAGT+TGG | - | chr1.4:23241524-23241543 | None:intergenic | 30.0% |
| ! | TTTATCCCTCAACTTTCTTT+TGG | + | chr1.4:23241745-23241764 | MS.gene88580:intron | 30.0% |
| ! | TTTGTAACCTCTATCTTTTG+AGG | - | chr1.4:23243863-23243882 | None:intergenic | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.4:23243731-23243750 | MS.gene88580:CDS | 30.0% |
| !! | TGGTCTTATTATGTTTCTGA+TGG | + | chr1.4:23243256-23243275 | MS.gene88580:intron | 30.0% |
| !! | TTTGATTTGAAAACCCTAAG+AGG | - | chr1.4:23242117-23242136 | None:intergenic | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.4:23243700-23243719 | MS.gene88580:intron | 30.0% |
| AAACCATATTTAGAAGCCTC+GGG | - | chr1.4:23241587-23241606 | None:intergenic | 35.0% | |
| AACTATTAGAACTTCAGGCA+CGG | - | chr1.4:23243512-23243531 | None:intergenic | 35.0% | |
| AATTGAGAGAATGCAGAACT+AGG | - | chr1.4:23243006-23243025 | None:intergenic | 35.0% | |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1.4:23242971-23242990 | MS.gene88580:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.4:23242796-23242815 | MS.gene88580:CDS | 35.0% | |
| AGAATAATGAGGTCTTACCA+TGG | - | chr1.4:23244104-23244123 | None:intergenic | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1.4:23242955-23242974 | MS.gene88580:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1.4:23242435-23242454 | None:intergenic | 35.0% | |
| ATGGATCCAAAAGAAAGTTG+AGG | - | chr1.4:23241754-23241773 | None:intergenic | 35.0% | |
| CAAACCATATTTAGAAGCCT+CGG | - | chr1.4:23241588-23241607 | None:intergenic | 35.0% | |
| CGAGATTTGATTATGGAGTT+CGG | - | chr1.4:23243459-23243478 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.4:23242797-23242816 | MS.gene88580:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1.4:23243137-23243156 | MS.gene88580:CDS | 35.0% | |
| GCAGTAACTATTAGAACTTC+AGG | - | chr1.4:23243517-23243536 | None:intergenic | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.4:23243801-23243820 | MS.gene88580:CDS | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1.4:23242976-23242995 | MS.gene88580:CDS | 35.0% | |
| GTATGCATTGCTTTATCTTC+AGG | + | chr1.4:23244468-23244487 | MS.gene88580:intron | 35.0% | |
| GTGCCACAAAATTGTTTATG+TGG | + | chr1.4:23244207-23244226 | MS.gene88580:CDS | 35.0% | |
| TACAACTCCTCAAAAGATAG+AGG | + | chr1.4:23243853-23243872 | MS.gene88580:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.4:23243213-23243232 | MS.gene88580:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.4:23242821-23242840 | MS.gene88580:CDS | 35.0% | |
| TGGATCCAAAAGAAAGTTGA+GGG | - | chr1.4:23241753-23241772 | None:intergenic | 35.0% | |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1.4:23242065-23242084 | MS.gene88580:CDS | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.4:23244090-23244109 | None:intergenic | 35.0% | |
| TTCTGGCACGAAATAATACA+TGG | + | chr1.4:23242365-23242384 | MS.gene88580:CDS | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | + | chr1.4:23242685-23242704 | MS.gene88580:intron | 35.0% | |
| ! | AGAAAGGTACATAGGTTTCA+AGG | + | chr1.4:23243325-23243344 | MS.gene88580:intron | 35.0% |
| ! | ATAAAGGACTCGTTGTCTTT+TGG | - | chr1.4:23244720-23244739 | None:intergenic | 35.0% |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | + | chr1.4:23242283-23242302 | MS.gene88580:CDS | 35.0% |
| ! | CTCCCACATAAACAATTTTG+TGG | - | chr1.4:23244213-23244232 | None:intergenic | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.4:23243724-23243743 | MS.gene88580:CDS | 35.0% |
| ! | GCGTTTTCCAATAGATTTTG+CGG | + | chr1.4:23242305-23242324 | MS.gene88580:CDS | 35.0% |
| ! | TATTTTACGGATAAGTAGGC+AGG | + | chr1.4:23243289-23243308 | MS.gene88580:intron | 35.0% |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1.4:23242053-23242072 | MS.gene88580:CDS | 35.0% |
| !! | ATTTTTCAGATGTCGCCAAA+AGG | - | chr1.4:23244796-23244815 | None:intergenic | 35.0% |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1.4:23242969-23242988 | None:intergenic | 35.0% |
| !! | TTTTCATCACCGTGTTTCTA+GGG | + | chr1.4:23241634-23241653 | MS.gene88580:intron | 35.0% |
| !! | TTTTTCAGATGTCGCCAAAA+GGG | - | chr1.4:23244795-23244814 | None:intergenic | 35.0% |
| ACACAATTGTACAGCCTCTT+AGG | + | chr1.4:23242100-23242119 | MS.gene88580:CDS | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.4:23242805-23242824 | None:intergenic | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1.4:23242440-23242459 | MS.gene88580:CDS | 40.0% | |
| ATGAGGTCTTACCATGGAAA+AGG | - | chr1.4:23244098-23244117 | None:intergenic | 40.0% | |
| CACAATTGTACAGCCTCTTA+GGG | + | chr1.4:23242101-23242120 | MS.gene88580:CDS | 40.0% | |
| CAGGAACTGAAATTCTGCAT+GGG | - | chr1.4:23243579-23243598 | None:intergenic | 40.0% | |
| CATAACAATCCCTAAAGCAG+AGG | - | chr1.4:23244032-23244051 | None:intergenic | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1.4:23242449-23242468 | None:intergenic | 40.0% | |
| GAACACGCGAGATTTGATTA+TGG | - | chr1.4:23243466-23243485 | None:intergenic | 40.0% | |
| GAACTCGTGTACTTCAGATA+TGG | - | chr1.4:23241773-23241792 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1.4:23242389-23242408 | MS.gene88580:CDS | 40.0% | |
| GCAGAATAATAACTGGCATG+AGG | + | chr1.4:23244544-23244563 | MS.gene88580:intron | 40.0% | |
| TACTCTCTCTCTACATGTCT+TGG | + | chr1.4:23243236-23243255 | MS.gene88580:intron | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1.4:23242057-23242076 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1.4:23242403-23242422 | MS.gene88580:CDS | 40.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1.4:23241536-23241555 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+AGG | - | chr1.4:23242675-23242694 | None:intergenic | 40.0% | |
| ! | CTTTTCATCACCGTGTTTCT+AGG | + | chr1.4:23241633-23241652 | MS.gene88580:intron | 40.0% |
| ! | CTTTTGGTACTCATCACTGA+TGG | - | chr1.4:23244704-23244723 | None:intergenic | 40.0% |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1.4:23244084-23244103 | MS.gene88580:CDS | 40.0% |
| ! | TGCTGCCAAAAGTTTTCAAC+TGG | + | chr1.4:23244278-23244297 | MS.gene88580:CDS | 40.0% |
| ! | TTTTGCACTGCCTTGTAAAC+CGG | - | chr1.4:23243159-23243178 | None:intergenic | 40.0% |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1.4:23243146-23243165 | MS.gene88580:CDS | 40.0% |
| !! | ATTGGTGATTGGTTTCCACT+CGG | + | chr1.4:23243742-23243761 | MS.gene88580:CDS | 40.0% |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1.4:23243183-23243202 | None:intergenic | 45.0% | |
| ACTAAACGCAAAGGAGACTG+TGG | - | chr1.4:23242666-23242685 | None:intergenic | 45.0% | |
| AGAAGAACTGTTAGCTCGCT+AGG | + | chr1.4:23244578-23244597 | MS.gene88580:CDS | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1.4:23243121-23243140 | None:intergenic | 45.0% | |
| CTCCTTTGCGTTTAGTTGAC+AGG | + | chr1.4:23242670-23242689 | MS.gene88580:CDS | 45.0% | |
| GCAGGAACTGAAATTCTGCA+TGG | - | chr1.4:23243580-23243599 | None:intergenic | 45.0% | |
| GCTCGATAAGATGTGTCTTC+AGG | - | chr1.4:23243892-23243911 | None:intergenic | 45.0% | |
| ! | TCCTGCAGTATCTTCCCTTT+TGG | + | chr1.4:23244778-23244797 | MS.gene88580:CDS | 45.0% |
| !! | TTGGTGATTGGTTTCCACTC+GGG | + | chr1.4:23243743-23243762 | MS.gene88580:CDS | 45.0% |
| GACATGCAGCCTCTGCTTTA+GGG | + | chr1.4:23244020-23244039 | MS.gene88580:CDS | 50.0% | |
| GCAGGATTAGAAGCAGCGAT+TGG | - | chr1.4:23242039-23242058 | None:intergenic | 50.0% | |
| GCCAAAAGGGAAGATACTGC+AGG | - | chr1.4:23244782-23244801 | None:intergenic | 50.0% | |
| GCTCCCGAGGCTTCTAAATA+TGG | + | chr1.4:23241581-23241600 | MS.gene88580:CDS | 50.0% | |
| TACAAGGCAGTGCAAAAGCC+AGG | + | chr1.4:23243162-23243181 | MS.gene88580:CDS | 50.0% | |
| TCTGCAGAAAATTGCTCCCG+AGG | + | chr1.4:23241568-23241587 | MS.gene88580:CDS | 50.0% | |
| TGACATGCAGCCTCTGCTTT+AGG | + | chr1.4:23244019-23244038 | MS.gene88580:CDS | 50.0% | |
| TGCAGCGGCATAGGATCAAT+AGG | + | chr1.4:23243433-23243452 | MS.gene88580:intron | 50.0% | |
| !! | TGGTGATTGGTTTCCACTCG+GGG | + | chr1.4:23243744-23243763 | MS.gene88580:CDS | 50.0% |
| GATCCTATGCCGCTGCATAG+TGG | - | chr1.4:23243430-23243449 | None:intergenic | 55.0% | |
| GTACTTCCGCCACTATGCAG+CGG | + | chr1.4:23243418-23243437 | MS.gene88580:intron | 55.0% | |
| CCTATGCCGCTGCATAGTGG+CGG | - | chr1.4:23243427-23243446 | None:intergenic | 60.0% | |
| CCGCCACTATGCAGCGGCAT+AGG | + | chr1.4:23243424-23243443 | MS.gene88580:intron | 65.0% | |
| TCGCTAGCTGCAGCCCCGAG+TGG | - | chr1.4:23243760-23243779 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 23241497 | 23244823 | 23241497 | ID=MS.gene88580 |
| chr1.4 | mRNA | 23241497 | 23244823 | 23241497 | ID=MS.gene88580.t1;Parent=MS.gene88580 |
| chr1.4 | exon | 23241497 | 23241602 | 23241497 | ID=MS.gene88580.t1.exon1;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23241497 | 23241602 | 23241497 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23242016 | 23242172 | 23242016 | ID=MS.gene88580.t1.exon2;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23242016 | 23242172 | 23242016 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23242265 | 23242484 | 23242265 | ID=MS.gene88580.t1.exon3;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23242265 | 23242484 | 23242265 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23242648 | 23242701 | 23242648 | ID=MS.gene88580.t1.exon4;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23242648 | 23242701 | 23242648 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23242790 | 23242869 | 23242790 | ID=MS.gene88580.t1.exon5;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23242790 | 23242869 | 23242790 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23242957 | 23243234 | 23242957 | ID=MS.gene88580.t1.exon6;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23242957 | 23243234 | 23242957 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23243710 | 23244105 | 23243710 | ID=MS.gene88580.t1.exon7;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23243710 | 23244105 | 23243710 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23244202 | 23244377 | 23244202 | ID=MS.gene88580.t1.exon8;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23244202 | 23244377 | 23244202 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| chr1.4 | exon | 23244548 | 23244823 | 23244548 | ID=MS.gene88580.t1.exon9;Parent=MS.gene88580.t1 |
| chr1.4 | CDS | 23244548 | 23244823 | 23244548 | ID=cds.MS.gene88580.t1;Parent=MS.gene88580.t1 |
| Gene Sequence |
| Protein sequence |
