Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88817.t1 | XP_013468809.1 | 92.7 | 192 | 13 | 1 | 48 | 239 | 1 | 191 | 5.00E-95 | 357.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88817.t1 | Q9M9S0 | 49.5 | 198 | 88 | 5 | 50 | 235 | 84 | 281 | 5.8e-44 | 179.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88817.t1 | G7L6E4 | 92.7 | 192 | 13 | 1 | 48 | 239 | 1 | 191 | 3.6e-95 | 357.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene88817.t1 | TF | zf-HD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88817.t1 | MTR_1g077020 | 92.708 | 192 | 13 | 1 | 48 | 239 | 1 | 191 | 4.32e-131 | 368 |
MS.gene88817.t1 | MTR_4g134580 | 41.772 | 237 | 83 | 5 | 55 | 236 | 112 | 348 | 5.63e-57 | 185 |
MS.gene88817.t1 | MTR_5g032600 | 46.535 | 202 | 81 | 6 | 54 | 234 | 76 | 271 | 9.29e-53 | 172 |
MS.gene88817.t1 | MTR_3g100650 | 46.231 | 199 | 88 | 4 | 53 | 234 | 77 | 273 | 3.22e-52 | 170 |
MS.gene88817.t1 | MTR_7g010300 | 41.414 | 198 | 100 | 3 | 53 | 234 | 85 | 282 | 7.64e-47 | 158 |
MS.gene88817.t1 | MTR_5g020510 | 41.176 | 204 | 92 | 5 | 56 | 236 | 99 | 297 | 1.06e-46 | 157 |
MS.gene88817.t1 | MTR_5g065440 | 41.784 | 213 | 91 | 4 | 54 | 234 | 56 | 267 | 3.47e-46 | 155 |
MS.gene88817.t1 | MTR_8g069080 | 39.000 | 200 | 102 | 5 | 55 | 234 | 68 | 267 | 1.20e-41 | 143 |
MS.gene88817.t1 | MTR_2g076780 | 38.916 | 203 | 97 | 6 | 56 | 234 | 37 | 236 | 2.95e-41 | 141 |
MS.gene88817.t1 | MTR_6g012280 | 39.462 | 223 | 62 | 7 | 56 | 234 | 91 | 284 | 3.32e-39 | 138 |
MS.gene88817.t1 | MTR_6g073013 | 36.517 | 178 | 74 | 6 | 56 | 230 | 19 | 160 | 2.30e-33 | 119 |
MS.gene88817.t1 | MTR_8g467340 | 63.492 | 63 | 23 | 0 | 172 | 234 | 271 | 333 | 1.27e-21 | 92.4 |
MS.gene88817.t1 | MTR_8g467340 | 64.407 | 59 | 19 | 1 | 52 | 108 | 60 | 118 | 8.34e-19 | 84.7 |
MS.gene88817.t1 | MTR_3g039810 | 62.264 | 53 | 20 | 0 | 54 | 106 | 18 | 70 | 1.74e-18 | 77.8 |
MS.gene88817.t1 | MTR_8g069380 | 52.381 | 63 | 30 | 0 | 172 | 234 | 52 | 114 | 1.25e-16 | 73.6 |
MS.gene88817.t1 | MTR_6g012220 | 60.000 | 55 | 18 | 1 | 50 | 104 | 15 | 65 | 1.41e-16 | 72.4 |
MS.gene88817.t1 | MTR_8g442330 | 30.137 | 146 | 81 | 3 | 65 | 209 | 14 | 139 | 3.95e-16 | 73.2 |
MS.gene88817.t1 | MTR_8g051480 | 53.226 | 62 | 28 | 1 | 173 | 234 | 68 | 128 | 1.07e-14 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88817.t1 | AT2G02540 | 47.867 | 211 | 79 | 4 | 49 | 234 | 80 | 284 | 6.41e-59 | 189 |
MS.gene88817.t1 | AT2G02540 | 47.867 | 211 | 79 | 4 | 49 | 234 | 80 | 284 | 6.41e-59 | 189 |
MS.gene88817.t1 | AT1G14440 | 49.495 | 198 | 88 | 5 | 50 | 235 | 84 | 281 | 1.99e-57 | 185 |
MS.gene88817.t1 | AT1G14440 | 49.495 | 198 | 88 | 5 | 50 | 235 | 84 | 281 | 1.99e-57 | 185 |
MS.gene88817.t1 | AT4G24660 | 44.737 | 190 | 79 | 3 | 54 | 234 | 47 | 219 | 3.37e-52 | 169 |
MS.gene88817.t1 | AT4G24660 | 44.920 | 187 | 77 | 3 | 54 | 231 | 47 | 216 | 4.16e-51 | 166 |
MS.gene88817.t1 | AT5G65410 | 43.386 | 189 | 87 | 2 | 55 | 233 | 74 | 252 | 4.15e-48 | 160 |
MS.gene88817.t1 | AT1G69600 | 45.178 | 197 | 85 | 7 | 48 | 228 | 23 | 212 | 5.23e-48 | 159 |
MS.gene88817.t1 | AT2G18350 | 41.935 | 186 | 102 | 2 | 54 | 236 | 80 | 262 | 2.05e-46 | 155 |
MS.gene88817.t1 | AT5G60480 | 42.180 | 211 | 103 | 8 | 26 | 228 | 4 | 203 | 4.77e-46 | 153 |
MS.gene88817.t1 | AT5G15210 | 43.158 | 190 | 95 | 5 | 49 | 228 | 49 | 235 | 2.14e-42 | 145 |
MS.gene88817.t1 | AT3G50890 | 41.919 | 198 | 96 | 5 | 54 | 239 | 58 | 248 | 5.77e-42 | 143 |
MS.gene88817.t1 | AT3G28920 | 40.930 | 215 | 77 | 5 | 54 | 231 | 50 | 251 | 6.17e-40 | 140 |
MS.gene88817.t1 | AT5G42780 | 38.947 | 190 | 107 | 6 | 43 | 229 | 53 | 236 | 3.40e-28 | 107 |
MS.gene88817.t1 | AT1G75240 | 69.643 | 56 | 17 | 0 | 51 | 106 | 71 | 126 | 4.11e-24 | 98.2 |
MS.gene88817.t1 | AT1G75240 | 59.677 | 62 | 25 | 0 | 172 | 233 | 240 | 301 | 4.68e-20 | 87.4 |
MS.gene88817.t1 | AT5G39760 | 57.576 | 66 | 28 | 0 | 172 | 237 | 200 | 265 | 7.06e-21 | 89.7 |
MS.gene88817.t1 | AT1G74660 | 66.038 | 53 | 18 | 0 | 54 | 106 | 37 | 89 | 1.40e-20 | 83.6 |
MS.gene88817.t1 | AT1G74660 | 66.038 | 53 | 18 | 0 | 54 | 106 | 37 | 89 | 1.90e-20 | 83.6 |
MS.gene88817.t1 | AT3G28917 | 58.462 | 65 | 23 | 2 | 54 | 114 | 31 | 95 | 1.43e-19 | 80.9 |
MS.gene88817.t1 | AT1G14687 | 28.889 | 180 | 105 | 6 | 56 | 231 | 7 | 167 | 6.43e-19 | 81.3 |
MS.gene88817.t1 | AT1G18835 | 66.038 | 53 | 15 | 1 | 54 | 106 | 24 | 73 | 9.27e-18 | 75.9 |
Find 30 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACATTAATGCACCCTTCT+TGG | 0.256074 | 1.2:+63521550 | MS.gene88817:CDS |
TTATGATAAAGATTGTATTA+AGG | 0.325403 | 1.2:+63521628 | MS.gene88817:CDS |
GATGTTGAGCTTTGCAGAAA+AGG | 0.345023 | 1.2:+63521727 | MS.gene88817:CDS |
AGTGCTATTTACAAAGTGTT+AGG | 0.370320 | 1.2:+63519848 | MS.gene88817:CDS |
GCTTGTAGAAAGATTTCTCT+TGG | 0.457726 | 1.2:-63521864 | None:intergenic |
AAGAACCATGCAGCTACAAT+TGG | 0.462343 | 1.2:+63521350 | MS.gene88817:CDS |
GACTCCATTTCTGTAAAAGA+AGG | 0.464161 | 1.2:-63521275 | None:intergenic |
TATTATGCATCCACACTTTG+AGG | 0.473414 | 1.2:-63521826 | None:intergenic |
ATTGGTGGCAATGCAATTGA+TGG | 0.483673 | 1.2:+63521368 | MS.gene88817:CDS |
TTATCTCCTAACAACAAAAG+TGG | 0.483711 | 1.2:+63521578 | MS.gene88817:CDS |
AGGAGATAAATGAGCCAAGA+AGG | 0.501984 | 1.2:-63521564 | None:intergenic |
TAAAGATTGTATTAAGGATG+TGG | 0.506741 | 1.2:+63521634 | MS.gene88817:CDS |
GGTGCATTAATGTTATGATC+AGG | 0.507932 | 1.2:-63521542 | None:intergenic |
TAAGTTCAGTAAAGAACAGA+AGG | 0.524622 | 1.2:+63521700 | MS.gene88817:CDS |
AACCATGCAGCTACAATTGG+TGG | 0.533193 | 1.2:+63521353 | MS.gene88817:CDS |
TTAATGTTATGATCAGGAAT+CGG | 0.552299 | 1.2:-63521536 | None:intergenic |
AGAGCAGCATAATGTTGAGA+AGG | 0.566633 | 1.2:-63521509 | None:intergenic |
TGCCACCAATTGTAGCTGCA+TGG | 0.577086 | 1.2:-63521355 | None:intergenic |
AAAATATGATAATTAAGAAG+AGG | 0.580153 | 1.2:+63521669 | MS.gene88817:CDS |
TCATAATAAGACTGATCAGA+AGG | 0.589777 | 1.2:-63521611 | None:intergenic |
GGCAATGCAATTGATGGATG+TGG | 0.602522 | 1.2:+63521374 | MS.gene88817:CDS |
TTGCAGAAAAGGCAGAGTGG+AGG | 0.609267 | 1.2:+63521738 | MS.gene88817:CDS |
TTACTGCTAACAGTGTCATA+CGG | 0.614297 | 1.2:+63519887 | MS.gene88817:CDS |
AGAGAAGAATCCTCAAAGTG+TGG | 0.619701 | 1.2:+63521816 | MS.gene88817:CDS |
GAGCAGCATAATGTTGAGAA+GGG | 0.623819 | 1.2:-63521508 | None:intergenic |
GGAGATAAATGAGCCAAGAA+GGG | 0.630466 | 1.2:-63521563 | None:intergenic |
TCAGAAGCTAGATGAATCTG+TGG | 0.653987 | 1.2:+63521763 | MS.gene88817:CDS |
GCTTTGCAGAAAAGGCAGAG+TGG | 0.664958 | 1.2:+63521735 | MS.gene88817:CDS |
ATCATCATTTAGCAGCACAA+AGG | 0.667058 | 1.2:+63519912 | MS.gene88817:CDS |
TGTGGTGAGTTCATGCCAAG+TGG | 0.691258 | 1.2:+63521392 | MS.gene88817:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACATTAATCTAATATAAA+TGG | - | chr1.2:63520036-63520055 | None:intergenic | 10.0% |
!!! | GTTTAGAATAAATTAATAAA+AGG | - | chr1.2:63520864-63520883 | None:intergenic | 10.0% |
!!! | TATTTTGAAAGATATTTTAT+AGG | - | chr1.2:63520107-63520126 | None:intergenic | 10.0% |
!! | AAAATATGATAATTAAGAAG+AGG | + | chr1.2:63521669-63521688 | MS.gene88817:CDS | 15.0% |
!! | ATAAATCATAGTATTTGTTT+AGG | + | chr1.2:63519970-63519989 | MS.gene88817:intron | 15.0% |
!! | TTATGATAAAGATTGTATTA+AGG | + | chr1.2:63521628-63521647 | MS.gene88817:CDS | 15.0% |
!!! | CTTCTTAATTATCATATTTT+CGG | - | chr1.2:63521669-63521688 | None:intergenic | 15.0% |
!! | AATCTAATATAAATGGACAT+GGG | - | chr1.2:63520029-63520048 | None:intergenic | 20.0% |
!! | ATCTTTCAAAATAACAAGTT+TGG | + | chr1.2:63520114-63520133 | MS.gene88817:intron | 20.0% |
!! | ATTCGATATTATACAGTAAT+GGG | + | chr1.2:63520054-63520073 | MS.gene88817:intron | 20.0% |
!! | GTAAACCAAATAAAAAGAAA+AGG | - | chr1.2:63520632-63520651 | None:intergenic | 20.0% |
!! | GTTCTTATCTTATTATTGTT+TGG | + | chr1.2:63520834-63520853 | MS.gene88817:intron | 20.0% |
!! | TAATCTAATATAAATGGACA+TGG | - | chr1.2:63520030-63520049 | None:intergenic | 20.0% |
!! | TATATACTATACAATTCCAT+AGG | + | chr1.2:63521097-63521116 | MS.gene88817:intron | 20.0% |
!! | TATTCGATATTATACAGTAA+TGG | + | chr1.2:63520053-63520072 | MS.gene88817:intron | 20.0% |
!! | TCATCTCTATATATAATAGA+AGG | + | chr1.2:63521197-63521216 | MS.gene88817:intron | 20.0% |
!! | TCTATTATATATAGAGATGA+TGG | - | chr1.2:63521197-63521216 | None:intergenic | 20.0% |
!! | TTAATGAGGAAATGAAAATT+TGG | - | chr1.2:63521172-63521191 | None:intergenic | 20.0% |
!!! | ACTAAACTGTATTATACTTT+TGG | + | chr1.2:63520650-63520669 | MS.gene88817:intron | 20.0% |
!!! | TTTGAAAGATATTTTATAGG+AGG | - | chr1.2:63520104-63520123 | None:intergenic | 20.0% |
! | AAGCTGACAAAGAATATTTA+TGG | - | chr1.2:63520808-63520827 | None:intergenic | 25.0% |
! | AATTGATTGATTAGGAGTAA+AGG | + | chr1.2:63519999-63520018 | MS.gene88817:intron | 25.0% |
! | AGTTCAAAACTAAAACGATA+CGG | - | chr1.2:63520398-63520417 | None:intergenic | 25.0% |
! | ATGAATAATCTCTAGACATA+TGG | + | chr1.2:63520448-63520467 | MS.gene88817:intron | 25.0% |
! | ATTGATTGATTAGGAGTAAA+GGG | + | chr1.2:63520000-63520019 | MS.gene88817:intron | 25.0% |
! | TAAACTCTAAGCTTGAATAA+TGG | + | chr1.2:63520287-63520306 | MS.gene88817:intron | 25.0% |
! | TAAAGATTGTATTAAGGATG+TGG | + | chr1.2:63521634-63521653 | MS.gene88817:CDS | 25.0% |
! | TAGAGATTATTCATTGTTGT+TGG | - | chr1.2:63520442-63520461 | None:intergenic | 25.0% |
! | TATGCCTCATAGTTTATTAT+CGG | + | chr1.2:63520185-63520204 | MS.gene88817:intron | 25.0% |
! | TTAATGTTATGATCAGGAAT+CGG | - | chr1.2:63521539-63521558 | None:intergenic | 25.0% |
! | TTCGATATTATACAGTAATG+GGG | + | chr1.2:63520055-63520074 | MS.gene88817:intron | 25.0% |
!! | ACTCTATAATTTCTTTTCTG+TGG | - | chr1.2:63521475-63521494 | None:intergenic | 25.0% |
!!! | TATCGTTTTAGTTTTGAACT+GGG | + | chr1.2:63520398-63520417 | MS.gene88817:intron | 25.0% |
AATAAAAAGAAAAGGCAACC+CGG | - | chr1.2:63520624-63520643 | None:intergenic | 30.0% | |
CTTACCGATAATAAACTATG+AGG | - | chr1.2:63520192-63520211 | None:intergenic | 30.0% | |
GGAACACAAATTGATTGATT+AGG | + | chr1.2:63519991-63520010 | MS.gene88817:intron | 30.0% | |
TAAGTTCAGTAAAGAACAGA+AGG | + | chr1.2:63521700-63521719 | MS.gene88817:CDS | 30.0% | |
TCATAATAAGACTGATCAGA+AGG | - | chr1.2:63521614-63521633 | None:intergenic | 30.0% | |
TGAGGAAATGAAAATTTGGA+TGG | - | chr1.2:63521168-63521187 | None:intergenic | 30.0% | |
TTATCTCCTAACAACAAAAG+TGG | + | chr1.2:63521578-63521597 | MS.gene88817:CDS | 30.0% | |
! | AGATTATTCATTGTTGTTGG+CGG | - | chr1.2:63520439-63520458 | None:intergenic | 30.0% |
! | CTTATGAAAAGATGTCCTTT+TGG | + | chr1.2:63520143-63520162 | MS.gene88817:intron | 30.0% |
! | GGTTGCCTTTTCTTTTTATT+TGG | + | chr1.2:63520624-63520643 | MS.gene88817:intron | 30.0% |
! | TCTAAGCTTGAATAATGGAA+AGG | + | chr1.2:63520292-63520311 | MS.gene88817:intron | 30.0% |
! | TGAACCTTCTTTTACAGAAA+TGG | + | chr1.2:63521271-63521290 | MS.gene88817:CDS | 30.0% |
!! | AGTGCTATTTACAAAGTGTT+AGG | + | chr1.2:63519848-63519867 | MS.gene88817:CDS | 30.0% |
!! | TAGAGATGATGGAATTAATG+AGG | - | chr1.2:63521186-63521205 | None:intergenic | 30.0% |
!!! | ATCGTTTTAGTTTTGAACTG+GGG | + | chr1.2:63520399-63520418 | MS.gene88817:intron | 30.0% |
!!! | GTATCGTTTTAGTTTTGAAC+TGG | + | chr1.2:63520397-63520416 | MS.gene88817:intron | 30.0% |
!!! | GTATTATACTTTTGGAACGT+TGG | + | chr1.2:63520658-63520677 | MS.gene88817:intron | 30.0% |
ACAGTTGTAGAATGTCCAAA+AGG | - | chr1.2:63520161-63520180 | None:intergenic | 35.0% | |
ACATTACTTTGAGTCTTGAG+AGG | - | chr1.2:63520732-63520751 | None:intergenic | 35.0% | |
ATCATCATTTAGCAGCACAA+AGG | + | chr1.2:63519912-63519931 | MS.gene88817:CDS | 35.0% | |
ATGTCATTGTACAGTGTGTA+TGG | - | chr1.2:63521067-63521086 | None:intergenic | 35.0% | |
CTCATTGCAAAGCAACATAT+TGG | + | chr1.2:63520753-63520772 | MS.gene88817:intron | 35.0% | |
GACTCCATTTCTGTAAAAGA+AGG | - | chr1.2:63521278-63521297 | None:intergenic | 35.0% | |
GCTTGTAGAAAGATTTCTCT+TGG | - | chr1.2:63521867-63521886 | None:intergenic | 35.0% | |
GGTGCATTAATGTTATGATC+AGG | - | chr1.2:63521545-63521564 | None:intergenic | 35.0% | |
TAACATTAATGCACCCTTCT+TGG | + | chr1.2:63521550-63521569 | MS.gene88817:CDS | 35.0% | |
TATTATGCATCCACACTTTG+AGG | - | chr1.2:63521829-63521848 | None:intergenic | 35.0% | |
TTACTGCTAACAGTGTCATA+CGG | + | chr1.2:63519887-63519906 | MS.gene88817:CDS | 35.0% | |
! | ACGGCCTTTTGTGTAAAAAA+CGG | + | chr1.2:63520526-63520545 | MS.gene88817:intron | 35.0% |
! | CTATGTGTAAAAGTGTACGA+GGG | - | chr1.2:63521022-63521041 | None:intergenic | 35.0% |
! | TCTATGTGTAAAAGTGTACG+AGG | - | chr1.2:63521023-63521042 | None:intergenic | 35.0% |
!! | CAGAAGTTTTGTCAAGAGAT+TGG | + | chr1.2:63521788-63521807 | MS.gene88817:CDS | 35.0% |
!!! | GTTGATCCACTTTTGTTGTT+AGG | - | chr1.2:63521587-63521606 | None:intergenic | 35.0% |
AAGAACCATGCAGCTACAAT+TGG | + | chr1.2:63521350-63521369 | MS.gene88817:CDS | 40.0% | |
ACTTTGAGTCTTGAGAGGTT+TGG | - | chr1.2:63520727-63520746 | None:intergenic | 40.0% | |
AGAGAAGAATCCTCAAAGTG+TGG | + | chr1.2:63521816-63521835 | MS.gene88817:CDS | 40.0% | |
AGAGCAGCATAATGTTGAGA+AGG | - | chr1.2:63521512-63521531 | None:intergenic | 40.0% | |
AGGAGATAAATGAGCCAAGA+AGG | - | chr1.2:63521567-63521586 | None:intergenic | 40.0% | |
GAGCAGCATAATGTTGAGAA+GGG | - | chr1.2:63521511-63521530 | None:intergenic | 40.0% | |
GATGTTGAGCTTTGCAGAAA+AGG | + | chr1.2:63521727-63521746 | MS.gene88817:CDS | 40.0% | |
GGAGATAAATGAGCCAAGAA+GGG | - | chr1.2:63521566-63521585 | None:intergenic | 40.0% | |
GTTGTTGTCATGTGACTGAA+AGG | + | chr1.2:63520482-63520501 | MS.gene88817:intron | 40.0% | |
TCAGAAGCTAGATGAATCTG+TGG | + | chr1.2:63521763-63521782 | MS.gene88817:CDS | 40.0% | |
TGGTATACCAATGAGGAGTA+GGG | + | chr1.2:63520678-63520697 | MS.gene88817:intron | 40.0% | |
TTGGTATACCAATGAGGAGT+AGG | + | chr1.2:63520677-63520696 | MS.gene88817:intron | 40.0% | |
TTTGCAAGTGAAGCAACCTA+TGG | - | chr1.2:63521116-63521135 | None:intergenic | 40.0% | |
! | AGTGTGTCATGTTTTCCACT+TGG | - | chr1.2:63521410-63521429 | None:intergenic | 40.0% |
! | ATTGGTGGCAATGCAATTGA+TGG | + | chr1.2:63521368-63521387 | MS.gene88817:CDS | 40.0% |
! | CGGCCTTTTGTGTAAAAAAC+GGG | + | chr1.2:63520527-63520546 | MS.gene88817:intron | 40.0% |
! | CTTTTCTGTGGAAGTTTCTG+TGG | - | chr1.2:63521463-63521482 | None:intergenic | 40.0% |
! | GCCTTTTGTGTAAAAAACGG+GGG | + | chr1.2:63520529-63520548 | MS.gene88817:intron | 40.0% |
! | GGACAGTCTTTTCTTCTAAG+TGG | + | chr1.2:63520774-63520793 | MS.gene88817:intron | 40.0% |
! | GGCCTTTTGTGTAAAAAACG+GGG | + | chr1.2:63520528-63520547 | MS.gene88817:intron | 40.0% |
!! | TTACACAAAAGGCCGTTTTC+AGG | - | chr1.2:63520522-63520541 | None:intergenic | 40.0% |
!!! | TCCCCCGTTTTTTACACAAA+AGG | - | chr1.2:63520533-63520552 | None:intergenic | 40.0% |
AACCATGCAGCTACAATTGG+TGG | + | chr1.2:63521353-63521372 | MS.gene88817:CDS | 45.0% | |
ACGGGTTCAAGTCCTGAAAA+CGG | + | chr1.2:63520507-63520526 | MS.gene88817:intron | 45.0% | |
AGATCGTTCGAGCGAAGAAA+GGG | + | chr1.2:63520217-63520236 | MS.gene88817:intron | 45.0% | |
AGGGACAACCACCAAATCTA+GGG | + | chr1.2:63520697-63520716 | MS.gene88817:intron | 45.0% | |
CGTACGACTCACCAAATGAT+AGG | + | chr1.2:63520559-63520578 | MS.gene88817:intron | 45.0% | |
GGAACGTTGGTATACCAATG+AGG | + | chr1.2:63520671-63520690 | MS.gene88817:intron | 45.0% | |
GTCATGTGACTGAAAGGTCA+CGG | + | chr1.2:63520488-63520507 | MS.gene88817:intron | 45.0% | |
TAGGGACAACCACCAAATCT+AGG | + | chr1.2:63520696-63520715 | MS.gene88817:intron | 45.0% | |
TCATGTGACTGAAAGGTCAC+GGG | + | chr1.2:63520489-63520508 | MS.gene88817:intron | 45.0% | |
! | GGCAATGCAATTGATGGATG+TGG | + | chr1.2:63521374-63521393 | MS.gene88817:CDS | 45.0% |
!! | CGAGAAGGTGTCCTATCATT+TGG | - | chr1.2:63520573-63520592 | None:intergenic | 45.0% |
AAGTGTACGAGGGAGATGAG+AGG | - | chr1.2:63521012-63521031 | None:intergenic | 50.0% | |
CAGATCGTTCGAGCGAAGAA+AGG | + | chr1.2:63520216-63520235 | MS.gene88817:intron | 50.0% | |
CCTTCTCGAAACTGCGTATG+CGG | + | chr1.2:63520585-63520604 | MS.gene88817:intron | 50.0% | |
CTTCTCGAAACTGCGTATGC+GGG | + | chr1.2:63520586-63520605 | MS.gene88817:intron | 50.0% | |
GATCGTTCGAGCGAAGAAAG+GGG | + | chr1.2:63520218-63520237 | MS.gene88817:intron | 50.0% | |
GCTTTGCAGAAAAGGCAGAG+TGG | + | chr1.2:63521735-63521754 | MS.gene88817:CDS | 50.0% | |
GGTTTGGACTGCCCTAGATT+TGG | - | chr1.2:63520711-63520730 | None:intergenic | 50.0% | |
GTCAGAGTCGTAGGCACAAT+AGG | + | chr1.2:63520332-63520351 | MS.gene88817:intron | 50.0% | |
TCCTCTATGGTCAGAGTCGT+AGG | + | chr1.2:63520323-63520342 | MS.gene88817:intron | 50.0% | |
TGCCACCAATTGTAGCTGCA+TGG | - | chr1.2:63521358-63521377 | None:intergenic | 50.0% | |
TGGTTGTCCCTACTCCTCAT+TGG | - | chr1.2:63520688-63520707 | None:intergenic | 50.0% | |
TGTGGTGAGTTCATGCCAAG+TGG | + | chr1.2:63521392-63521411 | MS.gene88817:CDS | 50.0% | |
TTGCAGAAAAGGCAGAGTGG+AGG | + | chr1.2:63521738-63521757 | MS.gene88817:CDS | 50.0% | |
TTGGACTGCCCTAGATTTGG+TGG | - | chr1.2:63520708-63520727 | None:intergenic | 50.0% | |
! | ATGCGGGAGCTTTAATGCAC+CGG | + | chr1.2:63520602-63520621 | MS.gene88817:intron | 50.0% |
CCGCATACGCAGTTTCGAGA+AGG | - | chr1.2:63520588-63520607 | None:intergenic | 55.0% | |
GCCTACGACTCTGACCATAG+AGG | - | chr1.2:63520327-63520346 | None:intergenic | 55.0% | |
! | TGCGGGAGCTTTAATGCACC+GGG | + | chr1.2:63520603-63520622 | MS.gene88817:intron | 55.0% |
!! | AAAGGCGCTGCAGTCCTCTA+TGG | + | chr1.2:63520310-63520329 | MS.gene88817:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 63519845 | 63521889 | 63519845 | ID=MS.gene88817 |
chr1.2 | mRNA | 63519845 | 63521889 | 63519845 | ID=MS.gene88817.t1;Parent=MS.gene88817 |
chr1.2 | exon | 63519845 | 63519933 | 63519845 | ID=MS.gene88817.t1.exon1;Parent=MS.gene88817.t1 |
chr1.2 | CDS | 63519845 | 63519933 | 63519845 | ID=cds.MS.gene88817.t1;Parent=MS.gene88817.t1 |
chr1.2 | exon | 63521259 | 63521889 | 63521259 | ID=MS.gene88817.t1.exon2;Parent=MS.gene88817.t1 |
chr1.2 | CDS | 63521259 | 63521889 | 63521259 | ID=cds.MS.gene88817.t1;Parent=MS.gene88817.t1 |
Gene Sequence |
Protein sequence |