AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88842.t1 MTR_3g045700 69.333 75 23 0 203 277 276 350 2.70e-29 114
MS.gene88842.t1 MTR_1g109550 47.059 136 60 4 15 143 12 142 9.57e-27 102
MS.gene88842.t1 MTR_7g083950 68.056 72 23 0 206 277 361 432 2.69e-25 104
MS.gene88842.t1 MTR_7g083950 44.167 120 43 6 101 209 16 122 4.82e-14 72.0
MS.gene88842.t1 MTR_4g133470 42.771 166 70 6 17 165 87 244 3.98e-25 100
MS.gene88842.t1 MTR_4g133470 40.000 115 59 2 63 167 49 163 1.10e-17 80.5
MS.gene88842.t1 MTR_1g109340 48.092 131 43 4 90 215 2 112 5.15e-25 102
MS.gene88842.t1 MTR_1g109340 60.526 76 30 0 201 276 279 354 2.30e-24 100
MS.gene88842.t1 MTR_3g006185 41.573 178 78 6 12 168 2 174 6.13e-25 98.2
MS.gene88842.t1 MTR_1g109520 59.091 88 27 2 198 276 89 176 8.47e-25 97.8
MS.gene88842.t1 MTR_4g133300 41.975 162 77 4 17 165 87 244 9.51e-25 99.8
MS.gene88842.t1 MTR_4g133300 40.000 115 59 2 63 167 49 163 1.10e-18 83.6
MS.gene88842.t1 MTR_3g006125 41.341 179 78 7 12 168 83 256 1.66e-22 94.0
MS.gene88842.t1 MTR_1g105955 42.636 129 52 4 55 161 35 163 2.38e-22 91.7
MS.gene88842.t1 MTR_1g105955 45.205 73 35 1 99 166 17 89 1.04e-12 65.5
MS.gene88842.t1 MTR_1g104960 37.500 168 85 4 18 169 12 175 7.15e-22 90.1
MS.gene88842.t1 MTR_3g006150 47.899 119 46 4 60 162 42 160 1.09e-20 86.7
MS.gene88842.t1 MTR_1g100280 53.165 79 35 1 201 277 259 337 1.93e-20 89.7
MS.gene88842.t1 MTR_6g091830 44.915 118 50 3 101 204 11 127 4.28e-20 89.7
MS.gene88842.t1 MTR_6g091830 47.500 80 33 2 207 277 376 455 5.56e-15 74.7
MS.gene88842.t1 MTR_6g092140 44.915 118 50 3 101 204 11 127 4.49e-20 89.7
MS.gene88842.t1 MTR_6g092140 47.500 80 33 2 207 277 376 455 3.08e-15 75.5
MS.gene88842.t1 MTR_3g006065 48.361 122 47 4 63 168 45 166 7.26e-20 85.1
MS.gene88842.t1 MTR_3g006105 39.444 180 82 7 12 169 2 176 1.96e-19 84.0
MS.gene88842.t1 MTR_4g133320 58.108 74 24 2 205 274 235 305 9.90e-17 79.0
MS.gene88842.t1 MTR_6g091850 46.250 80 34 2 207 277 22 101 3.55e-16 72.8
MS.gene88842.t1 MTR_1g105960 51.351 74 31 1 99 167 2 75 4.36e-16 72.8
MS.gene88842.t1 MTR_1g105960 35.849 106 49 2 23 128 5 91 5.62e-12 61.6
MS.gene88842.t1 MTR_1g104980 32.353 170 98 4 23 183 3 164 6.72e-16 73.9
MS.gene88842.t1 MTR_3g006180 52.703 74 32 1 206 276 265 338 8.00e-16 76.6
MS.gene88842.t1 MTR_3g006120 50.588 85 37 2 198 277 268 352 9.47e-16 76.6
MS.gene88842.t1 MTR_4g133490 54.054 74 33 1 205 277 275 348 1.02e-15 76.3
MS.gene88842.t1 MTR_1g100260 41.414 99 49 2 1 92 1 97 1.59e-15 71.6
MS.gene88842.t1 MTR_6g088340 47.500 80 33 2 207 277 354 433 1.60e-15 76.3
MS.gene88842.t1 MTR_5g036670 32.903 155 84 3 18 156 42 192 1.69e-15 77.0
MS.gene88842.t1 MTR_5g036670 51.351 74 31 1 94 162 39 112 6.42e-15 75.1
MS.gene88842.t1 MTR_3g006010 50.000 74 34 1 207 277 396 469 3.47e-15 75.5
MS.gene88842.t1 MTR_3g006010 35.862 145 59 5 92 204 4 146 6.84e-14 71.6
MS.gene88842.t1 MTR_1g104940 42.553 94 46 3 89 174 5 98 4.34e-15 70.5
MS.gene88842.t1 MTR_3g006100 48.780 82 37 2 198 274 268 349 4.57e-15 74.7
MS.gene88842.t1 MTR_1g093310 51.316 76 36 1 90 165 1 75 9.53e-15 68.2
MS.gene88842.t1 MTR_6g011110 43.529 85 36 2 204 277 194 277 1.15e-14 72.8
MS.gene88842.t1 MTR_1g105010 45.205 73 35 1 94 161 12 84 2.64e-14 68.2
MS.gene88842.t1 MTR_8g062700 48.000 75 34 1 94 163 38 112 6.07e-14 72.4
MS.gene88842.t1 MTR_8g062700 33.766 154 82 4 18 155 41 190 6.30e-14 72.0
MS.gene88842.t1 MTR_8g062700 48.000 75 34 1 94 163 38 112 6.13e-14 72.4
MS.gene88842.t1 MTR_8g062700 33.766 154 82 4 18 155 41 190 6.48e-14 72.0
MS.gene88842.t1 MTR_7g070100 50.602 83 33 3 202 277 269 350 1.16e-13 70.5
MS.gene88842.t1 MTR_7g013380 36.441 118 59 4 66 167 144 261 1.31e-13 69.7
MS.gene88842.t1 MTR_3g068220 47.500 80 33 2 204 274 275 354 2.28e-13 69.7
MS.gene88842.t1 MTR_6g008970 47.297 74 34 1 94 162 59 132 1.22e-12 68.2
MS.gene88842.t1 MTR_6g008970 31.169 154 86 3 18 155 62 211 3.55e-12 67.0
MS.gene88842.t1 MTR_3g006140 45.122 82 38 3 198 273 290 370 1.94e-12 67.0
MS.gene88842.t1 MTR_6g008995 45.946 74 35 1 94 162 33 106 8.63e-12 65.5
MS.gene88842.t1 MTR_6g008995 30.612 147 84 3 23 155 41 183 2.10e-11 64.3
MS.gene88842.t1 MTR_3g086480 47.826 69 32 2 204 269 186 253 8.64e-12 64.3
MS.gene88842.t1 MTR_1g104937 36.937 111 58 5 86 188 2 108 1.01e-11 60.8
MS.gene88842.t1 MTR_8g062350 44.595 74 36 1 94 162 10 83 3.75e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88842.t1 AT1G10450 36.250 160 83 5 10 155 76 230 2.90e-17 82.0
MS.gene88842.t1 AT1G10450 43.210 81 41 1 98 173 84 164 1.81e-11 64.7
MS.gene88842.t1 AT1G10450 36.250 160 83 5 10 155 25 179 3.91e-17 81.6
MS.gene88842.t1 AT1G10450 43.210 81 41 1 98 173 33 113 1.78e-11 64.7
MS.gene88842.t1 AT1G10450 36.250 160 83 5 10 155 25 179 3.91e-17 81.6
MS.gene88842.t1 AT1G10450 43.210 81 41 1 98 173 33 113 1.78e-11 64.7
MS.gene88842.t1 AT1G23810 31.176 170 88 4 10 154 5 170 1.63e-16 77.4
MS.gene88842.t1 AT1G24190 47.872 94 42 2 94 182 10 101 6.67e-16 78.2
MS.gene88842.t1 AT1G24190 32.468 154 84 4 18 155 13 162 6.92e-14 72.0
MS.gene88842.t1 AT1G24190 47.872 94 42 2 94 182 10 101 7.05e-16 78.2
MS.gene88842.t1 AT1G24190 32.468 154 84 4 18 155 13 162 6.92e-14 72.0
MS.gene88842.t1 AT1G24190 47.872 94 42 2 94 182 10 101 7.26e-16 78.2
MS.gene88842.t1 AT1G24190 32.468 154 84 4 18 155 13 162 7.06e-14 72.0
MS.gene88842.t1 AT3G01320 44.186 86 43 1 88 168 47 132 1.20e-14 74.3
MS.gene88842.t1 AT3G01320 30.719 153 87 3 18 155 56 204 5.26e-12 66.6
MS.gene88842.t1 AT3G01320 44.186 86 43 1 88 168 47 132 1.24e-14 74.3
MS.gene88842.t1 AT3G01320 30.719 153 87 3 18 155 56 204 5.67e-12 66.2
MS.gene88842.t1 AT1G70060 46.067 89 43 1 94 177 10 98 3.03e-14 73.2
MS.gene88842.t1 AT1G70060 46.067 89 43 1 94 177 10 98 3.03e-14 73.2
MS.gene88842.t1 AT1G24230 31.013 158 93 5 18 167 13 162 1.81e-13 68.9
MS.gene88842.t1 AT5G15025 46.667 75 35 1 93 162 42 116 1.86e-13 66.2
MS.gene88842.t1 AT5G15020 33.553 152 83 4 18 155 51 198 6.48e-13 69.3
MS.gene88842.t1 AT5G15020 46.753 77 36 1 91 162 45 121 7.17e-13 68.9
MS.gene88842.t1 AT5G15020 33.553 152 83 4 18 155 51 198 7.36e-13 68.9
MS.gene88842.t1 AT5G15020 46.753 77 36 1 91 162 45 121 7.71e-13 68.9
MS.gene88842.t1 AT1G27260 30.058 173 93 4 23 171 7 175 1.26e-12 66.2
MS.gene88842.t1 AT1G59890 46.667 75 33 2 98 167 45 117 1.36e-11 65.1
MS.gene88842.t1 AT1G59890 46.667 75 33 2 98 167 45 117 1.44e-11 65.1
MS.gene88842.t1 AT1G59890 46.667 75 33 2 98 167 45 117 1.45e-11 65.1
MS.gene88842.t1 AT1G59890 46.667 75 33 2 98 167 45 117 1.49e-11 65.1
MS.gene88842.t1 AT1G70030 43.243 74 37 1 94 162 7 80 2.00e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCGAAATCTAGTATTT+TGG 0.174602 1.1:-69919543 None:intergenic
CATCAAATCACACTTTCTTT+AGG 0.218768 1.1:+69918532 MS.gene88842:CDS
ACAACATGTTCCGTGTATTC+AGG 0.254219 1.1:+69920364 MS.gene88842:CDS
ATCAAATCACACTTTCTTTA+GGG 0.254430 1.1:+69918533 MS.gene88842:CDS
GTTGAACCACAAAATTAAAT+TGG 0.276783 1.1:-69918701 None:intergenic
CATAGGTATAAAGGTGAAAA+AGG 0.287802 1.1:+69919466 MS.gene88842:intron
CAAAATTTGATAGGAGTAAC+TGG 0.302149 1.1:+69920272 MS.gene88842:intron
TTTGATCCTTGAAATTGTTT+AGG 0.307479 1.1:-69918639 None:intergenic
TAGATCATCGCGAACTCTAT+AGG 0.330837 1.1:-69918308 None:intergenic
AGAGTGAAGGAGCTGCTTAA+AGG 0.369945 1.1:+69918673 MS.gene88842:CDS
GAATCTCCTAAACAATTTCA+AGG 0.370888 1.1:+69918633 MS.gene88842:CDS
GGGCATACAGATTTAATGTT+GGG 0.407816 1.1:+69918484 MS.gene88842:CDS
AAGAGAGCGGTGAACTTCCT+TGG 0.412247 1.1:+69919501 MS.gene88842:CDS
CTCTCATATCCCCACATGAC+CGG 0.418746 1.1:-69920310 None:intergenic
GCGAACTCTATAGGGCTTGT+TGG 0.426428 1.1:-69918299 None:intergenic
AGATCATCGCGAACTCTATA+GGG 0.427017 1.1:-69918307 None:intergenic
GAGTGAAGGAGCTGCTTAAA+GGG 0.452409 1.1:+69918674 MS.gene88842:CDS
AAGTATCGTTTCATGATAAG+AGG 0.455819 1.1:+69918590 MS.gene88842:CDS
AGTGTGATTTGATGTTCCTT+TGG 0.456196 1.1:-69918733 None:intergenic
ATTTACTTTCTTAAGATACA+TGG 0.457924 1.1:-69918332 None:intergenic
ACTAACTGACCGGTGGTGTC+AGG 0.464251 1.1:-69918766 None:intergenic
CAACATGTTCCGTGTATTCA+GGG 0.465231 1.1:+69920365 MS.gene88842:CDS
CCGGTGGTGTCAGGTTGAAA+TGG 0.476405 1.1:-69918757 None:intergenic
AGAGAGCGGTGAACTTCCTT+GGG 0.481057 1.1:+69919502 MS.gene88842:CDS
TCTTCACTCTTTCTTTGAAG+AGG 0.486448 1.1:-69918450 None:intergenic
AGTGTGATTTGATGTTCCTT+TGG 0.486633 1.1:-69918523 None:intergenic
TGATTTGATGTTCCTTTGGC+AGG 0.495215 1.1:-69918729 None:intergenic
ATTGTGATTCATAGGTATAA+AGG 0.496061 1.1:+69919457 MS.gene88842:intron
AGAGTGAAGATCTTGTTTGA+AGG 0.516121 1.1:+69918463 MS.gene88842:CDS
GAGTGAAGATCTTGTTTGAA+GGG 0.525367 1.1:+69918464 MS.gene88842:CDS
ATCATGCTTCCGACTCCTCA+TGG 0.544689 1.1:+69920412 MS.gene88842:CDS
AGGGCATACAGATTTAATGT+TGG 0.545740 1.1:+69918483 MS.gene88842:CDS
TCATGGAGCAAGTTCTTCCA+TGG 0.550097 1.1:+69920429 MS.gene88842:CDS
CATTGAGCAACCCGGTCATG+TGG 0.554102 1.1:+69920299 MS.gene88842:CDS
CCATTTCAACCTGACACCAC+CGG 0.555149 1.1:+69918757 MS.gene88842:CDS
TCTCATATCCCCACATGACC+GGG 0.557723 1.1:-69920309 None:intergenic
GAAAATAAATGATTACTCAT+CGG 0.566497 1.1:-69918268 None:intergenic
CAAGTTCTTCCATGGTCGAA+TGG 0.570891 1.1:+69920437 MS.gene88842:CDS
AGTATCGTTTCATGATAAGA+GGG 0.573814 1.1:+69918591 MS.gene88842:CDS
GTGAAGAAGGTAGAAGAGAG+CGG 0.583803 1.1:+69919488 MS.gene88842:CDS
AAGTGCTGTGGCAAGAGTGA+AGG 0.583838 1.1:+69918660 MS.gene88842:CDS
GAACTTGCTCCATGAGGAGT+CGG 0.587574 1.1:-69920421 None:intergenic
ATTCAACATCTTGCTGCCAA+AGG 0.592473 1.1:+69918507 MS.gene88842:CDS
GTTAGCATCCCCTGAATACA+CGG 0.598460 1.1:-69920374 None:intergenic
ATTGAGCAACCCGGTCATGT+GGG 0.606596 1.1:+69920300 MS.gene88842:CDS
ATGATATCAAGCACATCCCA+AGG 0.608076 1.1:-69919518 None:intergenic
CTGGTATGCATTGAGCAACC+CGG 0.611285 1.1:+69920291 MS.gene88842:CDS
AGATGCATCAGCGTTTCTTG+AGG 0.623515 1.1:+69918561 MS.gene88842:CDS
TTGAGCAACCCGGTCATGTG+GGG 0.627009 1.1:+69920301 MS.gene88842:CDS
GTTCAACTACTTCCTGCCAA+AGG 0.648751 1.1:+69918717 MS.gene88842:CDS
AACATGTTCCGTGTATTCAG+GGG 0.651389 1.1:+69920366 MS.gene88842:CDS
TCTAAAACACCATTCGACCA+TGG 0.653117 1.1:-69920446 None:intergenic
TTTCAAGGATCAAAGTGCTG+TGG 0.665575 1.1:+69918648 MS.gene88842:CDS
ATGGAAGAACTTGCTCCATG+AGG 0.689817 1.1:-69920427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTAAAAAATTTATTGTA+GGG + chr1.1:69919006-69919025 MS.gene88842:intron 10.0%
!! ATTTATTAATGACAAAAATA+AGG + chr1.1:69920170-69920189 MS.gene88842:intron 10.0%
!! TAATCTAAAAAATTTATTGT+AGG + chr1.1:69919005-69919024 MS.gene88842:intron 10.0%
!! AATATATCGAACAAATATAA+TGG - chr1.1:69918923-69918942 None:intergenic 15.0%
!! AATATTTAATGCTTTCAATT+AGG + chr1.1:69919137-69919156 MS.gene88842:intron 15.0%
!! ATCTAAAAAATTTATTGTAG+GGG + chr1.1:69919007-69919026 MS.gene88842:intron 15.0%
!! GATTGATTAACATAAATAAA+CGG - chr1.1:69919805-69919824 None:intergenic 15.0%
!!! AATTGAAAGCATTAAATATT+AGG - chr1.1:69919137-69919156 None:intergenic 15.0%
!!! TTTTTGTTTCAAAATTTGAT+AGG + chr1.1:69920263-69920282 MS.gene88842:intron 15.0%
!! AAAAATAAGGAATATCTACA+AGG + chr1.1:69920183-69920202 MS.gene88842:intron 20.0%
!! ATTTACTTTCTTAAGATACA+TGG - chr1.1:69918335-69918354 None:intergenic 20.0%
!!! ATATTTGTTGTATTTTATGC+TGG + chr1.1:69919291-69919310 MS.gene88842:intron 20.0%
! AAATTTCCTTATGGGAAAAT+GGG + chr1.1:69919317-69919336 MS.gene88842:intron 25.0%
! AATTTCTTGGAGAAATTTCT+TGG + chr1.1:69919613-69919632 MS.gene88842:intron 25.0%
! ACCTTCTTTATTCTTGTAAA+TGG - chr1.1:69919827-69919846 None:intergenic 25.0%
! ATATCGAACAAATATAATGG+TGG - chr1.1:69918920-69918939 None:intergenic 25.0%
! ATCAAATCACACTTTCTTTA+GGG + chr1.1:69918533-69918552 MS.gene88842:CDS 25.0%
! ATTGTGATTCATAGGTATAA+AGG + chr1.1:69919457-69919476 MS.gene88842:intron 25.0%
! GAAAAGGAATTAAAGACATA+GGG - chr1.1:69919072-69919091 None:intergenic 25.0%
! GTTGAACCACAAAATTAAAT+TGG - chr1.1:69918704-69918723 None:intergenic 25.0%
! TAAATTTCCTTATGGGAAAA+TGG + chr1.1:69919316-69919335 MS.gene88842:intron 25.0%
! TAAGAATAGTTAACTTCAGA+AGG - chr1.1:69919863-69919882 None:intergenic 25.0%
! TCCATTTACAAGAATAAAGA+AGG + chr1.1:69919823-69919842 MS.gene88842:intron 25.0%
! TGAAAAGGAATTAAAGACAT+AGG - chr1.1:69919073-69919092 None:intergenic 25.0%
! TTAGGATGTTAATATATGTG+AGG + chr1.1:69919155-69919174 MS.gene88842:intron 25.0%
! TTTGATCCTTGAAATTGTTT+AGG - chr1.1:69918642-69918661 None:intergenic 25.0%
!! AAAGCATTAAATATTAGGCA+TGG - chr1.1:69919132-69919151 None:intergenic 25.0%
!! AACAAATTAGTCTCTAAACT+AGG - chr1.1:69918985-69919004 None:intergenic 25.0%
!! ATCTATTGTTTTCTATACGT+TGG + chr1.1:69919190-69919209 MS.gene88842:intron 25.0%
!! CCTTTTCATTTTCTTTTGTT+GGG + chr1.1:69919085-69919104 MS.gene88842:intron 25.0%
!! CTTTTCATTTTCTTTTGTTG+GGG + chr1.1:69919086-69919105 MS.gene88842:intron 25.0%
!! GGGTTTTTCATAAAATTTCT+TGG + chr1.1:69919600-69919619 MS.gene88842:intron 25.0%
!! TCCTTTTCATTTTCTTTTGT+TGG + chr1.1:69919084-69919103 MS.gene88842:intron 25.0%
AATAGTTAACTTCAGAAGGA+AGG - chr1.1:69919859-69919878 None:intergenic 30.0%
AATTTCCTTATGGGAAAATG+GGG + chr1.1:69919318-69919337 MS.gene88842:intron 30.0%
AGTATCGTTTCATGATAAGA+GGG + chr1.1:69918591-69918610 MS.gene88842:CDS 30.0%
ATAGTTAACTTCAGAAGGAA+GGG - chr1.1:69919858-69919877 None:intergenic 30.0%
ATCATAGATTACTAACTGAC+CGG - chr1.1:69918779-69918798 None:intergenic 30.0%
CAAAATTTGATAGGAGTAAC+TGG + chr1.1:69920272-69920291 MS.gene88842:intron 30.0%
CATAGGTATAAAGGTGAAAA+AGG + chr1.1:69919466-69919485 MS.gene88842:intron 30.0%
CATCAAATCACACTTTCTTT+AGG + chr1.1:69918532-69918551 MS.gene88842:CDS 30.0%
CCCAACAAAAGAAAATGAAA+AGG - chr1.1:69919088-69919107 None:intergenic 30.0%
GAATCTCCTAAACAATTTCA+AGG + chr1.1:69918633-69918652 MS.gene88842:CDS 30.0%
GATGATATCACAGAAAAATG+AGG - chr1.1:69919364-69919383 None:intergenic 30.0%
TAAAAGTTGTTCATTACAGC+CGG - chr1.1:69920143-69920162 None:intergenic 30.0%
TGACCAAAAAGTTTATCGTT+AGG + chr1.1:69919706-69919725 MS.gene88842:intron 30.0%
TTCGAAATTTGAAGAAGTAG+TGG - chr1.1:69919650-69919669 None:intergenic 30.0%
TTGGGTTACTTATTTGACAA+TGG + chr1.1:69919988-69920007 MS.gene88842:intron 30.0%
TTTGTCAAACTGGAAACTTT+GGG + chr1.1:69920226-69920245 MS.gene88842:intron 30.0%
! AAGTATCGTTTCATGATAAG+AGG + chr1.1:69918590-69918609 MS.gene88842:CDS 30.0%
! CTGTAATGAACAACTTTTAG+TGG + chr1.1:69920144-69920163 MS.gene88842:intron 30.0%
! GTCATCGAAATCTAGTATTT+TGG - chr1.1:69919546-69919565 None:intergenic 30.0%
! TCTCCTAACGATAAACTTTT+TGG - chr1.1:69919712-69919731 None:intergenic 30.0%
! TTTTAGACATCTACGATATG+AGG + chr1.1:69920462-69920481 MS.gene88842:CDS 30.0%
! TTTTGTCAAACTGGAAACTT+TGG + chr1.1:69920225-69920244 MS.gene88842:intron 30.0%
!! AACAATGAGTTTTGTCAAAC+TGG + chr1.1:69920216-69920235 MS.gene88842:intron 30.0%
!! AGTTTACTTTCCCATTTTTG+TGG - chr1.1:69919228-69919247 None:intergenic 30.0%
!! ATAAACTTTTTGGTCAGGTA+TGG - chr1.1:69919702-69919721 None:intergenic 30.0%
!! GGCATACCAATTTAATTTTG+TGG + chr1.1:69918695-69918714 MS.gene88842:CDS 30.0%
!! TAACGATAAACTTTTTGGTC+AGG - chr1.1:69919707-69919726 None:intergenic 30.0%
AAAAGTTGTTCATTACAGCC+GGG - chr1.1:69920142-69920161 None:intergenic 35.0%
AAAGGTGAAAAAGGTGAAGA+AGG + chr1.1:69919475-69919494 MS.gene88842:CDS 35.0%
ACACTGTCATTGTGATTCAT+AGG + chr1.1:69919449-69919468 MS.gene88842:intron 35.0%
ACTAACTACTCACATGAAGA+AGG + chr1.1:69919245-69919264 MS.gene88842:intron 35.0%
AGCATATGGTAGAAACATGA+GGG - chr1.1:69918867-69918886 None:intergenic 35.0%
AGGGCATACAGATTTAATGT+TGG + chr1.1:69918483-69918502 MS.gene88842:CDS 35.0%
AGTGTGATTTGATGTTCCTT+TGG - chr1.1:69918526-69918545 None:intergenic 35.0%
ATCACTAACAAAGCCAACAT+TGG + chr1.1:69920064-69920083 MS.gene88842:intron 35.0%
CAGAAGACGAAACATAAGTA+GGG - chr1.1:69919754-69919773 None:intergenic 35.0%
CTTTCCTAGATTGAGTCTAA+TGG + chr1.1:69918956-69918975 MS.gene88842:intron 35.0%
GGAATTAAAGACATAGGGAA+AGG - chr1.1:69919067-69919086 None:intergenic 35.0%
GGGCATACAGATTTAATGTT+GGG + chr1.1:69918484-69918503 MS.gene88842:CDS 35.0%
TCACTAACAAAGCCAACATT+GGG + chr1.1:69920065-69920084 MS.gene88842:intron 35.0%
TGAATCACAATGACAGTGTT+AGG - chr1.1:69919448-69919467 None:intergenic 35.0%
TGGCAACAAACCAAAAATCA+CGG - chr1.1:69918896-69918915 None:intergenic 35.0%
TTGAAGAAGTAGTGGTTCTT+GGG - chr1.1:69919642-69919661 None:intergenic 35.0%
TTTATTGTAGGGGAAATGCA+TGG + chr1.1:69919017-69919036 MS.gene88842:intron 35.0%
TTTGAAGAAGTAGTGGTTCT+TGG - chr1.1:69919643-69919662 None:intergenic 35.0%
! AGAGTGAAGATCTTGTTTGA+AGG + chr1.1:69918463-69918482 MS.gene88842:CDS 35.0%
! ATTTTCTTTTGTTGGGGAGT+GGG + chr1.1:69919092-69919111 MS.gene88842:intron 35.0%
! CGAACAAATATAATGGTGGA+TGG - chr1.1:69918916-69918935 None:intergenic 35.0%
! GAGTGAAGATCTTGTTTGAA+GGG + chr1.1:69918464-69918483 MS.gene88842:CDS 35.0%
! GCTGGTCTAAATTTCCTTAT+GGG + chr1.1:69919309-69919328 MS.gene88842:intron 35.0%
! TCTTCACTCTTTCTTTGAAG+AGG - chr1.1:69918453-69918472 None:intergenic 35.0%
! TGCTGGTCTAAATTTCCTTA+TGG + chr1.1:69919308-69919327 MS.gene88842:intron 35.0%
! TGCTTTTGACAAATGCTCTA+AGG + chr1.1:69919904-69919923 MS.gene88842:intron 35.0%
!! ATGCTCTAAGGAATTTGTCT+TGG + chr1.1:69919916-69919935 MS.gene88842:intron 35.0%
AACATGTTCCGTGTATTCAG+GGG + chr1.1:69920366-69920385 MS.gene88842:CDS 40.0%
AATCACGGCATTACAGCATA+TGG - chr1.1:69918881-69918900 None:intergenic 40.0%
ACAACATGTTCCGTGTATTC+AGG + chr1.1:69920364-69920383 MS.gene88842:CDS 40.0%
ACGAAACATAAGTAGGGTAG+AGG - chr1.1:69919748-69919767 None:intergenic 40.0%
ACGATCCATGACCACAAAAA+TGG + chr1.1:69919214-69919233 MS.gene88842:intron 40.0%
ACTTATGTTTCGTCTTCTGG+AGG + chr1.1:69919755-69919774 MS.gene88842:intron 40.0%
AGATCATCGCGAACTCTATA+GGG - chr1.1:69918310-69918329 None:intergenic 40.0%
ATAGATTACTAACTGACCGG+TGG - chr1.1:69918776-69918795 None:intergenic 40.0%
ATCAATCTCGAAACTCTGGT+TGG + chr1.1:69919969-69919988 MS.gene88842:intron 40.0%
ATGATATCAAGCACATCCCA+AGG - chr1.1:69919521-69919540 None:intergenic 40.0%
ATTCAACATCTTGCTGCCAA+AGG + chr1.1:69918507-69918526 MS.gene88842:CDS 40.0%
CAACATGTTCCGTGTATTCA+GGG + chr1.1:69920365-69920384 MS.gene88842:CDS 40.0%
CACTAACAAAGCCAACATTG+GGG + chr1.1:69920066-69920085 MS.gene88842:intron 40.0%
CAGCATATGGTAGAAACATG+AGG - chr1.1:69918868-69918887 None:intergenic 40.0%
CCAGAAGACGAAACATAAGT+AGG - chr1.1:69919755-69919774 None:intergenic 40.0%
CCTACTTATGTTTCGTCTTC+TGG + chr1.1:69919752-69919771 MS.gene88842:intron 40.0%
CGATCCATGACCACAAAAAT+GGG + chr1.1:69919215-69919234 MS.gene88842:intron 40.0%
GACAATGGAAAATGCAGAGA+TGG + chr1.1:69920003-69920022 MS.gene88842:intron 40.0%
GCATTTGTCAAAAGCAAGCA+AGG - chr1.1:69919900-69919919 None:intergenic 40.0%
GTCTATCAATCTCGAAACTC+TGG + chr1.1:69919965-69919984 MS.gene88842:intron 40.0%
TAGATCATCGCGAACTCTAT+AGG - chr1.1:69918311-69918330 None:intergenic 40.0%
TAGTGTGTGCAAGAATTGGA+GGG + chr1.1:69919580-69919599 MS.gene88842:intron 40.0%
TCAATCTCGAAACTCTGGTT+GGG + chr1.1:69919970-69919989 MS.gene88842:intron 40.0%
TGATTTGATGTTCCTTTGGC+AGG - chr1.1:69918522-69918541 None:intergenic 40.0%
TTGCTAGTGTGTGCAAGAAT+TGG + chr1.1:69919576-69919595 MS.gene88842:intron 40.0%
! CATTTTCTTTTGTTGGGGAG+TGG + chr1.1:69919091-69919110 MS.gene88842:intron 40.0%
! CTCTAAGGAATTTGTCTTGG+TGG + chr1.1:69919919-69919938 MS.gene88842:intron 40.0%
! GATTACCCCATTTTCCCATA+AGG - chr1.1:69919326-69919345 None:intergenic 40.0%
! TCTAAAACACCATTCGACCA+TGG - chr1.1:69920449-69920468 None:intergenic 40.0%
! TGCTGTAATGCCGTGATTTT+TGG + chr1.1:69918883-69918902 MS.gene88842:intron 40.0%
! TTTTCTTTTGTTGGGGAGTG+GGG + chr1.1:69919093-69919112 MS.gene88842:intron 40.0%
!! AGAGATGGTTGTTGACTTTG+TGG + chr1.1:69920018-69920037 MS.gene88842:intron 40.0%
!! CTTTCCCATTTTTGTGGTCA+TGG - chr1.1:69919222-69919241 None:intergenic 40.0%
!! TTTCAAGGATCAAAGTGCTG+TGG + chr1.1:69918648-69918667 MS.gene88842:CDS 40.0%
AGAGTGAAGGAGCTGCTTAA+AGG + chr1.1:69918673-69918692 MS.gene88842:CDS 45.0%
AGATGCATCAGCGTTTCTTG+AGG + chr1.1:69918561-69918580 MS.gene88842:CDS 45.0%
CAAGTTCTTCCATGGTCGAA+TGG + chr1.1:69920437-69920456 MS.gene88842:CDS 45.0%
CTAGTGTGTGCAAGAATTGG+AGG + chr1.1:69919579-69919598 MS.gene88842:intron 45.0%
CTCAAGCTGACTATTACTCC+CGG + chr1.1:69920121-69920140 MS.gene88842:intron 45.0%
GACGCCATTAGACTCAATCT+AGG - chr1.1:69918963-69918982 None:intergenic 45.0%
GAGTGAAGGAGCTGCTTAAA+GGG + chr1.1:69918674-69918693 MS.gene88842:CDS 45.0%
GTGAAGAAGGTAGAAGAGAG+CGG + chr1.1:69919488-69919507 MS.gene88842:CDS 45.0%
GTTAGCATCCCCTGAATACA+CGG - chr1.1:69920377-69920396 None:intergenic 45.0%
GTTCAACTACTTCCTGCCAA+AGG + chr1.1:69918717-69918736 MS.gene88842:CDS 45.0%
TAGGGAAAGGTCAAGTAGTG+AGG - chr1.1:69919054-69919073 None:intergenic 45.0%
TCATGGAGCAAGTTCTTCCA+TGG + chr1.1:69920429-69920448 MS.gene88842:CDS 45.0%
! ATGGAAGAACTTGCTCCATG+AGG - chr1.1:69920430-69920449 None:intergenic 45.0%
AAGAGAGCGGTGAACTTCCT+TGG + chr1.1:69919501-69919520 MS.gene88842:CDS 50.0%
AGAGAGCGGTGAACTTCCTT+GGG + chr1.1:69919502-69919521 MS.gene88842:CDS 50.0%
ATCATGCTTCCGACTCCTCA+TGG + chr1.1:69920412-69920431 MS.gene88842:CDS 50.0%
ATTGAGCAACCCGGTCATGT+GGG + chr1.1:69920300-69920319 MS.gene88842:CDS 50.0%
CAAGCTGAGTACCCCAATGT+TGG - chr1.1:69920080-69920099 None:intergenic 50.0%
CCATTTCAACCTGACACCAC+CGG + chr1.1:69918757-69918776 MS.gene88842:CDS 50.0%
CTCTCATATCCCCACATGAC+CGG - chr1.1:69920313-69920332 None:intergenic 50.0%
CTGGTATGCATTGAGCAACC+CGG + chr1.1:69920291-69920310 MS.gene88842:CDS 50.0%
GCGAACTCTATAGGGCTTGT+TGG - chr1.1:69918302-69918321 None:intergenic 50.0%
TCTCATATCCCCACATGACC+GGG - chr1.1:69920312-69920331 None:intergenic 50.0%
! AAGTGCTGTGGCAAGAGTGA+AGG + chr1.1:69918660-69918679 MS.gene88842:CDS 50.0%
! GAACTTGCTCCATGAGGAGT+CGG - chr1.1:69920424-69920443 None:intergenic 50.0%
ACTAACTGACCGGTGGTGTC+AGG - chr1.1:69918769-69918788 None:intergenic 55.0%
CATTGAGCAACCCGGTCATG+TGG + chr1.1:69920299-69920318 MS.gene88842:CDS 55.0%
TTGAGCAACCCGGTCATGTG+GGG + chr1.1:69920301-69920320 MS.gene88842:CDS 55.0%
!! CCGGTGGTGTCAGGTTGAAA+TGG - chr1.1:69918760-69918779 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 69918271 69920507 69918271 ID=MS.gene88842
chr1.1 mRNA 69918271 69920507 69918271 ID=MS.gene88842.t1;Parent=MS.gene88842
chr1.1 exon 69918271 69918778 69918271 ID=MS.gene88842.t1.exon1;Parent=MS.gene88842.t1
chr1.1 CDS 69918271 69918778 69918271 ID=cds.MS.gene88842.t1;Parent=MS.gene88842.t1
chr1.1 exon 69919471 69919573 69919471 ID=MS.gene88842.t1.exon2;Parent=MS.gene88842.t1
chr1.1 CDS 69919471 69919573 69919471 ID=cds.MS.gene88842.t1;Parent=MS.gene88842.t1
chr1.1 exon 69920285 69920507 69920285 ID=MS.gene88842.t1.exon3;Parent=MS.gene88842.t1
chr1.1 CDS 69920285 69920507 69920285 ID=cds.MS.gene88842.t1;Parent=MS.gene88842.t1
Gene Sequence

>MS.gene88842

ATGAGTAATCATTTATTTTCTGATCTATCCAACAAGCCCTATAGAGTTCGCGATGATCTATCCATGTATCTTAAGAAAGTAAATGTTGCGTTTCAATATGACAGAATAAAGAATGATCAGTTTAACGAACTTCGATATGAAGTAGTAAGTCATAAATATGATCATGATGAGTTTTTAAACCTCTTCAAAGAAAGAGTGAAGATCTTGTTTGAAGGGCATACAGATTTAATGTTGGGATTCAACATCTTGCTGCCAAAGGAACATCAAATCACACTTTCTTTAGGGTCTAAAGATGCATCAGCGTTTCTTGAGGCTGTAAAAGTATCGTTTCATGATAAGAGGGAAACTTATAATGAGTTTTTGAATCTCCTAAACAATTTCAAGGATCAAAGTGCTGTGGCAAGAGTGAAGGAGCTGCTTAAAGGGCATACCAATTTAATTTTGTGGTTCAACTACTTCCTGCCAAAGGAACATCAAATCACACTTCCATTTCAACCTGACACCACCGGTCAGTTAGTAATCTATGATTATTCATTGCACTTCTCATATGTTGATACTTTTATGCAGTTTTTTTTTTTTTTTACTATATATATCCCTCATGTTTCTACCATATGCTGTAATGCCGTGATTTTTGGTTTGTTGCCATCCACCATTATATTTGTTCGATATATTTAAATTGTTCAATCTTTCCTAGATTGAGTCTAATGGCGTCCTAGTTTAGAGACTAATTTGTTTAATCTAAAAAATTTATTGTAGGGGAAATGCATGGAAATGATTTTTCCTCACTACTTGACCTTTCCCTATGTCTTTAATTCCTTTTCATTTTCTTTTGTTGGGGAGTGGGGTTCAAATAAAATGCCATGCCTAATATTTAATGCTTTCAATTAGGATGTTAATATATGTGAGGATGAAAATGAATATCTATTGTTTTCTATACGTTGGCACGATCCATGACCACAAAAATGGGAAAGTAAACTAACTACTCACATGAAGAAGGAAAAAAAAAAAAAAAGATCACACATATTTGTTGTATTTTATGCTGGTCTAAATTTCCTTATGGGAAAATGGGGTAATCAATATTTGTTTATCTCCTCATTTTTCTGTGATATCATCAGATTAACGATAAAATATCTTAACTTTTATAAATTAAAAAAAATAACATGTTTAGAAATCACCTAACACTGTCATTGTGATTCATAGGTATAAAGGTGAAAAAGGTGAAGAAGGTAGAAGAGAGCGGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAATACTAGATTTCGATGACTTTTTTCAGTTTGCTAGTGTGTGCAAGAATTGGAGGGTTTTTCATAAAATTTCTTGGAGAAATTTCTTGGCATCCCAAGAACCACTACTTCTTCAAATTTCGAATCAAGTTAAGAAATCATATTTCTTTATTACCATACCTGACCAAAAAGTTTATCGTTAGGAGATGATGAAGTACTTCCTCTACCCTACTTATGTTTCGTCTTCTGGAGGATATTTTATCATGACAAAACACAACCGTTTATTTATGTTAATCAATCCATTTACAAGAATAAAGAAGGTAATCAATACCCTTCCTTCTGAAGTTAACTATTCTTATTTAACTGATCGTGCCTTGCTTGCTTTTGACAAATGCTCTAAGGAATTTGTCTTGGTGGTTTTATGTGAAAATCGATCGCATGTCTATCAATCTCGAAACTCTGGTTGGGTTACTTATTTGACAATGGAAAATGCAGAGATGGTTGTTGACTTTGTGGTTTTTCATAATATAATATATGTTATCACTAACAAAGCCAACATTGGGGTACTCAGCTTGAATTCTGCAAATATTAAATTTCTCAAGCTGACTATTACTCCCGGCTGTAATGAACAACTTTTAGTGGTTGATTTATTAATGACAAAAATAAGGAATATCTACAAGGTAGACTTCTCAACAATGAGTTTTGTCAAACTGGAAACTTTGGGCGATACTGCATTATTTTTTGTTTCAAAATTTGATAGGAGTAACTGGTATGCATTGAGCAACCCGGTCATGTGGGGATATGAGAGCAACTCTGTGTATGTCATCGATCTTTTCTCTACAACATGTTCCGTGTATTCAGGGGATGCTAACGAGTTGCAAAAATGCATCATGCTTCCGACTCCTCATGGAGCAAGTTCTTCCATGGTCGAATGGTGTTTTAGACATCTACGATATGAGGTAGATTATTCTCAAGTTGAGTAA
Protein sequence

>MS.gene88842.t1

MSNHLFSDLSNKPYRVRDDLSMYLKKVNVAFQYDRIKNDQFNELRYEVVSHKYDHDEFLNLFKERVKILFEGHTDLMLGFNILLPKEHQITLSLGSKDASAFLEAVKVSFHDKRETYNEFLNLLNNFKDQSAVARVKELLKGHTNLILWFNYFLPKEHQITLPFQPDTTGIKVKKVKKVEESGELPWDVLDIISKILDFDDFFQSNWYALSNPVMWGYESNSVYVIDLFSTTCSVYSGDANELQKCIMLPTPHGASSSMVEWCFRHLRYEVDYSQVE